Multiple sequence alignment - TraesCS3D01G005500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G005500 chr3D 100.000 5327 0 0 1 5327 2151436 2146110 0.000000e+00 9838.0
1 TraesCS3D01G005500 chr3D 94.318 176 8 2 2698 2873 397162719 397162546 8.790000e-68 268.0
2 TraesCS3D01G005500 chr3A 90.391 1967 104 41 732 2631 1919290 1921238 0.000000e+00 2507.0
3 TraesCS3D01G005500 chr3A 91.447 1064 47 20 2868 3906 1921385 1922429 0.000000e+00 1421.0
4 TraesCS3D01G005500 chr3A 95.687 371 12 3 3906 4276 1922489 1922855 1.280000e-165 593.0
5 TraesCS3D01G005500 chr3A 90.722 291 24 1 444 731 1918739 1919029 8.370000e-103 385.0
6 TraesCS3D01G005500 chr3A 91.603 262 21 1 182 442 1909434 1909695 1.410000e-95 361.0
7 TraesCS3D01G005500 chr3A 84.642 293 36 4 3044 3336 268525951 268526234 3.140000e-72 283.0
8 TraesCS3D01G005500 chr3A 91.018 167 14 1 1714 1880 253733482 253733647 1.930000e-54 224.0
9 TraesCS3D01G005500 chr3A 87.912 182 12 4 4431 4604 1923420 1923599 6.990000e-49 206.0
10 TraesCS3D01G005500 chr3A 88.514 148 14 3 4948 5095 1923905 1924049 5.480000e-40 176.0
11 TraesCS3D01G005500 chr3A 91.339 127 11 0 1754 1880 253757004 253757130 1.970000e-39 174.0
12 TraesCS3D01G005500 chr3A 88.372 129 10 2 4270 4393 1922951 1923079 3.320000e-32 150.0
13 TraesCS3D01G005500 chr3A 86.525 141 14 2 1504 1644 95843325 95843190 3.320000e-32 150.0
14 TraesCS3D01G005500 chr3A 100.000 51 0 0 5215 5265 1924273 1924323 1.580000e-15 95.3
15 TraesCS3D01G005500 chr3B 87.043 2215 159 65 603 2713 4332192 4330002 0.000000e+00 2383.0
16 TraesCS3D01G005500 chr3B 91.522 1439 69 29 2868 4276 4330007 4328592 0.000000e+00 1932.0
17 TraesCS3D01G005500 chr3B 90.857 525 46 1 1 525 4332724 4332202 0.000000e+00 702.0
18 TraesCS3D01G005500 chr3B 88.701 177 6 4 4493 4658 4328316 4328143 2.520000e-48 204.0
19 TraesCS3D01G005500 chr3B 92.086 139 8 2 4745 4880 4328097 4327959 5.440000e-45 193.0
20 TraesCS3D01G005500 chr3B 92.308 117 5 1 5215 5327 4327849 4327733 4.270000e-36 163.0
21 TraesCS3D01G005500 chr3B 88.000 125 12 3 5095 5218 372832377 372832255 1.550000e-30 145.0
22 TraesCS3D01G005500 chr3B 83.465 127 12 8 5097 5219 420304148 420304269 5.640000e-20 110.0
23 TraesCS3D01G005500 chr6D 80.222 632 70 27 2868 3470 160225242 160225847 1.770000e-114 424.0
24 TraesCS3D01G005500 chr6D 97.576 165 4 0 2709 2873 204160015 204160179 3.140000e-72 283.0
25 TraesCS3D01G005500 chr6D 90.909 121 8 2 5098 5218 464608109 464608226 5.520000e-35 159.0
26 TraesCS3D01G005500 chr6D 98.649 74 1 0 5096 5169 316625956 316625883 1.200000e-26 132.0
27 TraesCS3D01G005500 chr1A 84.507 426 49 7 3044 3469 218306547 218306139 6.420000e-109 405.0
28 TraesCS3D01G005500 chr1A 86.853 251 31 2 2454 2703 80620235 80619986 4.060000e-71 279.0
29 TraesCS3D01G005500 chr1A 97.531 162 4 0 2712 2873 254349076 254348915 1.460000e-70 278.0
30 TraesCS3D01G005500 chr1A 96.951 164 5 0 2714 2877 247339018 247338855 5.260000e-70 276.0
31 TraesCS3D01G005500 chr1A 86.861 137 13 2 1504 1640 80620369 80620238 1.200000e-31 148.0
32 TraesCS3D01G005500 chr1A 96.610 59 1 1 5165 5222 425236933 425236875 4.390000e-16 97.1
33 TraesCS3D01G005500 chr2A 79.495 634 69 28 908 1509 20809281 20809885 1.390000e-105 394.0
34 TraesCS3D01G005500 chr2A 79.362 470 47 25 2874 3309 4401182 4401635 8.730000e-73 285.0
35 TraesCS3D01G005500 chr2A 90.964 166 13 1 2054 2219 4400854 4401017 6.940000e-54 222.0
36 TraesCS3D01G005500 chr2A 85.246 122 14 3 5096 5213 716168843 716168722 7.250000e-24 122.0
37 TraesCS3D01G005500 chr2A 96.610 59 1 1 5165 5222 342544242 342544300 4.390000e-16 97.1
38 TraesCS3D01G005500 chr7A 83.447 441 54 9 3031 3470 330106023 330105601 5.000000e-105 392.0
39 TraesCS3D01G005500 chr7A 80.321 498 53 20 2868 3336 86491442 86491923 8.550000e-88 335.0
40 TraesCS3D01G005500 chr7A 86.973 261 32 2 2453 2713 49781982 49781724 5.220000e-75 292.0
41 TraesCS3D01G005500 chr7A 96.364 165 6 0 2712 2876 699913970 699913806 6.800000e-69 272.0
42 TraesCS3D01G005500 chr7D 82.201 427 56 14 3044 3470 346566882 346566476 3.050000e-92 350.0
43 TraesCS3D01G005500 chr5B 87.671 292 30 6 892 1180 670366538 670366250 8.550000e-88 335.0
44 TraesCS3D01G005500 chr5B 86.765 204 26 1 2500 2703 162826207 162826005 5.370000e-55 226.0
45 TraesCS3D01G005500 chr4D 79.960 499 52 19 2868 3336 13600134 13600614 1.850000e-84 324.0
46 TraesCS3D01G005500 chr4D 97.561 164 4 0 2710 2873 484111927 484111764 1.130000e-71 281.0
47 TraesCS3D01G005500 chr4D 86.275 204 27 1 2500 2703 16297302 16297100 2.500000e-53 220.0
48 TraesCS3D01G005500 chr4D 93.939 66 3 1 1383 1448 244327047 244326983 1.220000e-16 99.0
49 TraesCS3D01G005500 chr2B 85.294 306 35 6 3032 3336 738933290 738932994 1.860000e-79 307.0
50 TraesCS3D01G005500 chr2B 78.207 569 61 28 903 1448 31678209 31677681 6.700000e-79 305.0
51 TraesCS3D01G005500 chr2B 77.719 570 61 30 903 1448 31656948 31656421 6.750000e-74 289.0
52 TraesCS3D01G005500 chr6A 88.048 251 28 2 2454 2703 31918817 31919066 4.030000e-76 296.0
53 TraesCS3D01G005500 chr6A 93.548 155 10 0 1726 1880 517222330 517222176 1.150000e-56 231.0
54 TraesCS3D01G005500 chr6A 87.500 144 11 4 1499 1640 31918676 31918814 5.520000e-35 159.0
55 TraesCS3D01G005500 chr6A 85.484 124 16 2 5096 5218 594530574 594530696 1.560000e-25 128.0
56 TraesCS3D01G005500 chr2D 98.795 166 2 0 2712 2877 2261990 2261825 4.030000e-76 296.0
57 TraesCS3D01G005500 chr2D 89.157 166 16 1 2054 2219 571748616 571748779 6.990000e-49 206.0
58 TraesCS3D01G005500 chr2D 96.250 80 3 0 5090 5169 37535486 37535565 1.200000e-26 132.0
59 TraesCS3D01G005500 chr2D 93.548 62 2 2 5160 5220 588034140 588034200 2.040000e-14 91.6
60 TraesCS3D01G005500 chr2D 92.063 63 2 3 5157 5218 316269465 316269405 9.510000e-13 86.1
61 TraesCS3D01G005500 chrUn 77.856 569 62 28 903 1448 306110406 306110933 1.450000e-75 294.0
62 TraesCS3D01G005500 chrUn 77.984 486 62 27 3055 3534 35266065 35265619 4.090000e-66 263.0
63 TraesCS3D01G005500 chrUn 77.984 486 62 27 3055 3534 293413017 293413463 4.090000e-66 263.0
64 TraesCS3D01G005500 chrUn 96.610 59 1 1 5165 5222 459259748 459259690 4.390000e-16 97.1
65 TraesCS3D01G005500 chr5D 98.171 164 3 0 2711 2874 390353975 390354138 2.430000e-73 287.0
66 TraesCS3D01G005500 chr5D 86.400 250 33 1 2454 2703 227772049 227772297 6.800000e-69 272.0
67 TraesCS3D01G005500 chr5D 87.429 175 21 1 1269 1443 12872122 12871949 3.250000e-47 200.0
68 TraesCS3D01G005500 chr5D 88.276 145 10 4 1499 1641 227771908 227772047 3.300000e-37 167.0
69 TraesCS3D01G005500 chr5D 95.000 60 1 2 5160 5218 241265382 241265324 5.680000e-15 93.5
70 TraesCS3D01G005500 chr7B 93.923 181 9 2 2711 2891 689198879 689198701 6.800000e-69 272.0
71 TraesCS3D01G005500 chr7B 93.548 62 2 2 5165 5224 695952619 695952680 2.040000e-14 91.6
72 TraesCS3D01G005500 chr6B 86.400 250 32 2 2454 2703 22055505 22055258 6.800000e-69 272.0
73 TraesCS3D01G005500 chr6B 86.957 138 13 2 1507 1644 22055636 22055504 3.320000e-32 150.0
74 TraesCS3D01G005500 chr4A 88.235 221 23 3 2454 2674 602083816 602084033 1.470000e-65 261.0
75 TraesCS3D01G005500 chr4A 84.459 148 17 6 1499 1641 602083668 602083814 2.000000e-29 141.0
76 TraesCS3D01G005500 chr1D 94.194 155 9 0 1726 1880 169002807 169002653 2.480000e-58 237.0
77 TraesCS3D01G005500 chr1D 87.255 204 25 1 2500 2703 21732694 21732492 1.150000e-56 231.0
78 TraesCS3D01G005500 chr4B 85.417 144 14 4 1499 1640 584687386 584687524 5.560000e-30 143.0
79 TraesCS3D01G005500 chr4B 91.398 93 7 1 5078 5169 624748579 624748487 5.600000e-25 126.0
80 TraesCS3D01G005500 chr1B 96.000 75 3 0 5095 5169 402103406 402103332 7.250000e-24 122.0
81 TraesCS3D01G005500 chr1B 89.130 92 7 1 3380 3471 586872880 586872792 1.570000e-20 111.0
82 TraesCS3D01G005500 chr5A 92.188 64 2 3 5161 5222 673726922 673726860 2.640000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G005500 chr3D 2146110 2151436 5326 True 9838.0000 9838 100.000000 1 5327 1 chr3D.!!$R1 5326
1 TraesCS3D01G005500 chr3A 1918739 1924323 5584 False 691.6625 2507 91.630625 444 5265 8 chr3A.!!$F5 4821
2 TraesCS3D01G005500 chr3B 4327733 4332724 4991 True 929.5000 2383 90.419500 1 5327 6 chr3B.!!$R2 5326
3 TraesCS3D01G005500 chr6D 160225242 160225847 605 False 424.0000 424 80.222000 2868 3470 1 chr6D.!!$F1 602
4 TraesCS3D01G005500 chr2A 20809281 20809885 604 False 394.0000 394 79.495000 908 1509 1 chr2A.!!$F1 601
5 TraesCS3D01G005500 chr2A 4400854 4401635 781 False 253.5000 285 85.163000 2054 3309 2 chr2A.!!$F3 1255
6 TraesCS3D01G005500 chr2B 31677681 31678209 528 True 305.0000 305 78.207000 903 1448 1 chr2B.!!$R2 545
7 TraesCS3D01G005500 chr2B 31656421 31656948 527 True 289.0000 289 77.719000 903 1448 1 chr2B.!!$R1 545
8 TraesCS3D01G005500 chrUn 306110406 306110933 527 False 294.0000 294 77.856000 903 1448 1 chrUn.!!$F2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.419459 CCCTATCCTATGGCCTCCCT 59.581 60.0 3.32 0.0 0.00 4.20 F
906 1198 0.544697 GTCCCCGTCTCTCTCTCTCT 59.455 60.0 0.00 0.0 0.00 3.10 F
1895 2238 0.034186 TTGCCGGCATTTCTGATCCT 60.034 50.0 33.25 0.0 0.00 3.24 F
2175 2521 0.457851 CTTCTGGTAGAGGCAGACCG 59.542 60.0 0.00 0.0 42.76 4.79 F
3197 3721 0.460811 CGCTGATGCTGCTCAGGTAA 60.461 55.0 21.93 0.0 42.42 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 2001 0.036388 CTGGCTCCACCGAAAGCTAA 60.036 55.0 0.00 0.00 43.94 3.09 R
2007 2350 0.382158 TGTCTCGAGCTGCTATTCCG 59.618 55.0 7.81 1.54 0.00 4.30 R
3647 4176 0.106268 ACAACCTGCCAATGTCCACA 60.106 50.0 0.00 0.00 0.00 4.17 R
3649 4178 1.039068 CAACAACCTGCCAATGTCCA 58.961 50.0 0.00 0.00 0.00 4.02 R
4525 5533 0.108472 TTCATCTCCTCTGCTGCACG 60.108 55.0 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.825721 AGGCGGATCATATCATAAGGATTTTC 59.174 38.462 0.00 0.00 37.44 2.29
46 47 6.825721 GGCGGATCATATCATAAGGATTTTCT 59.174 38.462 0.00 0.00 37.44 2.52
54 55 9.624373 CATATCATAAGGATTTTCTCCCATAGG 57.376 37.037 0.00 0.00 46.27 2.57
90 91 8.865420 ATAGATATGTAGAGTCACCGTGTATT 57.135 34.615 0.00 0.00 0.00 1.89
91 92 6.971602 AGATATGTAGAGTCACCGTGTATTG 58.028 40.000 0.00 0.00 0.00 1.90
98 99 1.069500 GTCACCGTGTATTGCACCAAC 60.069 52.381 0.00 0.00 44.97 3.77
102 103 1.069296 CCGTGTATTGCACCAACACAG 60.069 52.381 19.66 13.84 44.97 3.66
108 109 2.026014 GCACCAACACAGCAACGG 59.974 61.111 0.00 0.00 0.00 4.44
131 132 6.292703 CGGCTAGGTATATACAAAGTGCAAAC 60.293 42.308 14.70 0.00 0.00 2.93
133 134 7.929785 GGCTAGGTATATACAAAGTGCAAACTA 59.070 37.037 14.70 2.50 0.00 2.24
135 136 9.811995 CTAGGTATATACAAAGTGCAAACTACA 57.188 33.333 14.70 0.00 0.00 2.74
137 138 9.681062 AGGTATATACAAAGTGCAAACTACAAT 57.319 29.630 14.70 0.00 0.00 2.71
138 139 9.716507 GGTATATACAAAGTGCAAACTACAATG 57.283 33.333 14.70 0.00 0.00 2.82
144 145 0.521291 TGCAAACTACAATGGCGAGC 59.479 50.000 0.00 0.00 0.00 5.03
168 169 4.202441 CTGCAACATCCTTAGCTATGGTT 58.798 43.478 21.63 13.09 0.00 3.67
177 178 3.364062 CTTAGCTATGGTTCTCGTCGTG 58.636 50.000 0.00 0.00 0.00 4.35
184 185 4.753877 TTCTCGTCGTGCTCGCCG 62.754 66.667 5.13 5.13 39.77 6.46
204 205 0.419459 CCCTATCCTATGGCCTCCCT 59.581 60.000 3.32 0.00 0.00 4.20
261 262 2.054799 TGCAAGAAGACCACTAACCCT 58.945 47.619 0.00 0.00 0.00 4.34
270 271 1.574428 CACTAACCCTGCGTTGTGC 59.426 57.895 0.00 0.00 46.70 4.57
288 289 1.592669 CGTGGCTATGCTAAGCGCT 60.593 57.895 2.64 2.64 43.74 5.92
336 337 3.190849 CATGACCTCGCCAGCGTG 61.191 66.667 12.32 9.56 40.74 5.34
356 357 1.865788 GCTCTGCAAATCGCCACCAA 61.866 55.000 0.00 0.00 41.33 3.67
375 376 2.668550 ACCGCCAAGAAGAACGCC 60.669 61.111 0.00 0.00 0.00 5.68
378 379 4.445545 GCCAAGAAGAACGCCGCG 62.446 66.667 12.14 12.14 0.00 6.46
379 380 2.736995 CCAAGAAGAACGCCGCGA 60.737 61.111 21.79 0.00 0.00 5.87
387 388 3.215606 GAACGCCGCGATCATCTGC 62.216 63.158 21.79 0.00 0.00 4.26
396 397 0.955178 CGATCATCTGCGACCTAGGT 59.045 55.000 16.26 16.26 0.00 3.08
465 466 2.577644 GCACATGTCATTGCCGCG 60.578 61.111 0.00 0.00 32.21 6.46
466 467 2.100797 CACATGTCATTGCCGCGG 59.899 61.111 24.05 24.05 0.00 6.46
548 549 4.796231 CGTGTCCGAGGCGAAGGG 62.796 72.222 0.00 0.00 35.63 3.95
639 640 3.774959 GACGATGGAGCGATGCGGT 62.775 63.158 0.00 0.00 41.33 5.68
667 668 3.781770 GACCTCATCGGCCTGCTCG 62.782 68.421 0.00 0.00 35.61 5.03
670 671 4.193334 TCATCGGCCTGCTCGTCG 62.193 66.667 0.00 0.00 0.00 5.12
700 701 7.926555 AGTGACCGATAATAAATCATTTCTCGT 59.073 33.333 0.00 0.00 32.71 4.18
851 1117 2.034999 GGCATTCCGTTGTCCCCA 59.965 61.111 0.00 0.00 0.00 4.96
852 1118 1.379843 GGCATTCCGTTGTCCCCAT 60.380 57.895 0.00 0.00 0.00 4.00
853 1119 0.970427 GGCATTCCGTTGTCCCCATT 60.970 55.000 0.00 0.00 0.00 3.16
855 1121 1.955208 GCATTCCGTTGTCCCCATTCT 60.955 52.381 0.00 0.00 0.00 2.40
856 1122 2.682563 GCATTCCGTTGTCCCCATTCTA 60.683 50.000 0.00 0.00 0.00 2.10
857 1123 3.616219 CATTCCGTTGTCCCCATTCTAA 58.384 45.455 0.00 0.00 0.00 2.10
858 1124 2.773993 TCCGTTGTCCCCATTCTAAC 57.226 50.000 0.00 0.00 0.00 2.34
861 1127 1.066716 CGTTGTCCCCATTCTAACCGA 60.067 52.381 0.00 0.00 0.00 4.69
862 1128 2.419574 CGTTGTCCCCATTCTAACCGAT 60.420 50.000 0.00 0.00 0.00 4.18
863 1129 3.203716 GTTGTCCCCATTCTAACCGATC 58.796 50.000 0.00 0.00 0.00 3.69
864 1130 2.473070 TGTCCCCATTCTAACCGATCA 58.527 47.619 0.00 0.00 0.00 2.92
865 1131 2.434336 TGTCCCCATTCTAACCGATCAG 59.566 50.000 0.00 0.00 0.00 2.90
866 1132 2.698797 GTCCCCATTCTAACCGATCAGA 59.301 50.000 0.00 0.00 0.00 3.27
899 1191 3.827898 CTGCCGTCCCCGTCTCTC 61.828 72.222 0.00 0.00 0.00 3.20
900 1192 4.361971 TGCCGTCCCCGTCTCTCT 62.362 66.667 0.00 0.00 0.00 3.10
903 1195 1.820481 CCGTCCCCGTCTCTCTCTC 60.820 68.421 0.00 0.00 0.00 3.20
904 1196 1.222387 CGTCCCCGTCTCTCTCTCT 59.778 63.158 0.00 0.00 0.00 3.10
905 1197 0.812412 CGTCCCCGTCTCTCTCTCTC 60.812 65.000 0.00 0.00 0.00 3.20
906 1198 0.544697 GTCCCCGTCTCTCTCTCTCT 59.455 60.000 0.00 0.00 0.00 3.10
1253 1586 2.088674 CTCCGCCCTCTTACATCCGG 62.089 65.000 0.00 0.00 37.21 5.14
1429 1762 2.803133 CGTCAACAAAGTCTGCTCCTCA 60.803 50.000 0.00 0.00 0.00 3.86
1452 1793 3.652869 GGGATGAAGGGTAATCCATCTCA 59.347 47.826 4.22 0.00 43.63 3.27
1453 1794 4.505742 GGGATGAAGGGTAATCCATCTCAC 60.506 50.000 4.22 0.00 43.63 3.51
1461 1802 3.243771 GGTAATCCATCTCACCACCTACG 60.244 52.174 0.00 0.00 0.00 3.51
1500 1843 3.111098 GTCACTGCTGCTCAAAAACTTG 58.889 45.455 0.00 0.00 0.00 3.16
1519 1862 1.109323 GTGTTGTTGGCCTGCTCCTT 61.109 55.000 3.32 0.00 0.00 3.36
1760 2103 2.322999 GATCGCGGTTTGGGCATGAC 62.323 60.000 6.13 0.00 0.00 3.06
1787 2130 1.043116 TCGACGGGATGCTCAAGGAT 61.043 55.000 0.00 0.00 0.00 3.24
1881 2224 4.785453 GGGAGGAGCAGGTTGCCG 62.785 72.222 0.00 0.00 46.52 5.69
1892 2235 0.323725 AGGTTGCCGGCATTTCTGAT 60.324 50.000 33.25 9.50 0.00 2.90
1894 2237 0.101219 GTTGCCGGCATTTCTGATCC 59.899 55.000 33.25 5.92 0.00 3.36
1895 2238 0.034186 TTGCCGGCATTTCTGATCCT 60.034 50.000 33.25 0.00 0.00 3.24
1897 2240 1.211703 TGCCGGCATTTCTGATCCTTA 59.788 47.619 29.03 0.00 0.00 2.69
1898 2241 2.158623 TGCCGGCATTTCTGATCCTTAT 60.159 45.455 29.03 0.00 0.00 1.73
1899 2242 2.485814 GCCGGCATTTCTGATCCTTATC 59.514 50.000 24.80 0.00 0.00 1.75
1902 2245 4.503817 CCGGCATTTCTGATCCTTATCTGA 60.504 45.833 0.00 0.00 38.05 3.27
1903 2246 5.059161 CGGCATTTCTGATCCTTATCTGAA 58.941 41.667 4.24 4.24 43.97 3.02
1904 2247 5.049818 CGGCATTTCTGATCCTTATCTGAAC 60.050 44.000 7.06 0.00 44.78 3.18
1906 2249 5.755375 GCATTTCTGATCCTTATCTGAACGA 59.245 40.000 7.06 0.00 44.78 3.85
1907 2250 6.258727 GCATTTCTGATCCTTATCTGAACGAA 59.741 38.462 7.06 0.00 44.78 3.85
1908 2251 7.625553 CATTTCTGATCCTTATCTGAACGAAC 58.374 38.462 7.06 0.00 44.78 3.95
1942 2285 4.271696 TGTACAGCTAGAACTGCACATT 57.728 40.909 0.00 0.00 38.67 2.71
1946 2289 4.499183 ACAGCTAGAACTGCACATTCTAC 58.501 43.478 10.39 8.50 41.60 2.59
1958 2301 5.109210 TGCACATTCTACTTATCTGAACGG 58.891 41.667 0.00 0.00 0.00 4.44
1974 2317 3.498397 TGAACGGACTTTGCTCTTTCATC 59.502 43.478 0.00 0.00 0.00 2.92
1989 2332 6.430962 TCTTTCATCTAGGATGCTTATGCT 57.569 37.500 0.00 0.00 40.48 3.79
2066 2409 2.676632 ATTGTTCCGGTATGTGCGTA 57.323 45.000 0.00 0.00 0.00 4.42
2076 2419 2.616842 GGTATGTGCGTAATTTGAGGGG 59.383 50.000 0.00 0.00 0.00 4.79
2098 2444 5.497474 GGCCCAAAACTCTTCTTCTGTATA 58.503 41.667 0.00 0.00 0.00 1.47
2175 2521 0.457851 CTTCTGGTAGAGGCAGACCG 59.542 60.000 0.00 0.00 42.76 4.79
2221 2571 2.644798 AGTCTTGCAAAGGTAGTCCCAT 59.355 45.455 0.00 0.00 46.24 4.00
2410 2785 5.860941 TCTTCTCCTTGGTGATCTATGTC 57.139 43.478 0.00 0.00 0.00 3.06
2445 2820 3.217626 AGTGAAGCTGAAGAAACTTGGG 58.782 45.455 0.00 0.00 0.00 4.12
2515 2890 9.525409 CTAGTATAAGGTTTGCTGTTTACGTAT 57.475 33.333 0.00 0.00 0.00 3.06
2534 2909 6.541086 ACGTATTCTGACTAGTCGTTTACTG 58.459 40.000 17.85 13.38 39.39 2.74
2544 2919 2.059541 GTCGTTTACTGTCTCTGTGGC 58.940 52.381 0.00 0.00 0.00 5.01
2556 2931 4.220821 TGTCTCTGTGGCTAGTTTCTTAGG 59.779 45.833 0.00 0.00 0.00 2.69
2587 2965 4.535526 TGCAGAGTAGTTAATGTGCAGA 57.464 40.909 7.24 0.00 43.85 4.26
2626 3004 6.856938 GCTATCACAATCTTGAATGAAGCATC 59.143 38.462 0.00 0.00 31.40 3.91
2674 3153 3.375610 GCTCTGTGATCGAAGTGTCTCTA 59.624 47.826 0.00 0.00 0.00 2.43
2675 3154 4.729458 GCTCTGTGATCGAAGTGTCTCTAC 60.729 50.000 0.00 0.00 0.00 2.59
2716 3199 8.099364 TGAACAATTTCATTCAGAACTACTCC 57.901 34.615 0.00 0.00 36.79 3.85
2717 3200 7.174946 TGAACAATTTCATTCAGAACTACTCCC 59.825 37.037 0.00 0.00 36.79 4.30
2718 3201 6.784031 ACAATTTCATTCAGAACTACTCCCT 58.216 36.000 0.00 0.00 35.56 4.20
2719 3202 6.881602 ACAATTTCATTCAGAACTACTCCCTC 59.118 38.462 0.00 0.00 35.56 4.30
2720 3203 5.422214 TTTCATTCAGAACTACTCCCTCC 57.578 43.478 0.00 0.00 35.56 4.30
2721 3204 3.024547 TCATTCAGAACTACTCCCTCCG 58.975 50.000 0.00 0.00 0.00 4.63
2722 3205 2.599408 TTCAGAACTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
2723 3206 2.599408 TCAGAACTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
2724 3207 2.444421 TCAGAACTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 36.81 3.95
2725 3208 1.477295 CAGAACTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 37.15 3.62
2726 3209 1.358445 AGAACTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 37.15 3.36
2727 3210 2.579860 AGAACTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 37.15 2.94
2728 3211 3.011032 AGAACTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 37.15 2.69
2729 3212 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2730 3213 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2731 3214 3.705072 ACTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
2732 3215 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2733 3216 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2734 3217 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2735 3218 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2736 3219 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2737 3220 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2738 3221 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2739 3222 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2740 3223 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2741 3224 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
2742 3225 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
2743 3226 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
2744 3227 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
2745 3228 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
2746 3229 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
2747 3230 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
2759 3242 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
2760 3243 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
2761 3244 8.035394 GTCTTTGTAGAGATTTCACTATGGACA 58.965 37.037 0.00 0.00 0.00 4.02
2762 3245 8.593679 TCTTTGTAGAGATTTCACTATGGACAA 58.406 33.333 0.00 0.00 0.00 3.18
2763 3246 8.547967 TTTGTAGAGATTTCACTATGGACAAC 57.452 34.615 0.00 0.00 0.00 3.32
2764 3247 7.239763 TGTAGAGATTTCACTATGGACAACA 57.760 36.000 0.00 0.00 0.00 3.33
2765 3248 7.851228 TGTAGAGATTTCACTATGGACAACAT 58.149 34.615 0.00 0.00 43.68 2.71
2766 3249 8.977412 TGTAGAGATTTCACTATGGACAACATA 58.023 33.333 0.00 0.00 41.03 2.29
2767 3250 9.250624 GTAGAGATTTCACTATGGACAACATAC 57.749 37.037 0.00 0.00 41.03 2.39
2768 3251 6.980978 AGAGATTTCACTATGGACAACATACG 59.019 38.462 0.00 0.00 41.03 3.06
2769 3252 6.049149 AGATTTCACTATGGACAACATACGG 58.951 40.000 0.00 0.00 41.03 4.02
2770 3253 5.408880 TTTCACTATGGACAACATACGGA 57.591 39.130 0.00 0.00 41.03 4.69
2771 3254 5.607939 TTCACTATGGACAACATACGGAT 57.392 39.130 0.00 0.00 41.03 4.18
2772 3255 4.944048 TCACTATGGACAACATACGGATG 58.056 43.478 5.94 5.94 41.03 3.51
2774 3257 5.595133 TCACTATGGACAACATACGGATGTA 59.405 40.000 15.10 0.00 45.93 2.29
2775 3258 6.266786 TCACTATGGACAACATACGGATGTAT 59.733 38.462 15.10 5.31 45.93 2.29
2776 3259 6.586463 CACTATGGACAACATACGGATGTATC 59.414 42.308 15.10 14.47 45.93 2.24
2777 3260 5.808366 ATGGACAACATACGGATGTATCT 57.192 39.130 15.10 0.00 45.93 1.98
2778 3261 6.911250 ATGGACAACATACGGATGTATCTA 57.089 37.500 15.10 13.10 45.93 1.98
2779 3262 6.327279 TGGACAACATACGGATGTATCTAG 57.673 41.667 15.10 4.73 45.93 2.43
2780 3263 6.066032 TGGACAACATACGGATGTATCTAGA 58.934 40.000 15.10 0.00 45.93 2.43
2781 3264 6.719829 TGGACAACATACGGATGTATCTAGAT 59.280 38.462 15.10 10.73 45.93 1.98
2782 3265 7.030165 GGACAACATACGGATGTATCTAGATG 58.970 42.308 15.10 9.24 45.93 2.90
2783 3266 6.390721 ACAACATACGGATGTATCTAGATGC 58.609 40.000 15.10 14.54 45.93 3.91
2784 3267 6.015434 ACAACATACGGATGTATCTAGATGCA 60.015 38.462 23.38 23.38 45.93 3.96
2785 3268 6.782082 ACATACGGATGTATCTAGATGCAT 57.218 37.500 29.54 29.54 44.77 3.96
2786 3269 7.175347 ACATACGGATGTATCTAGATGCATT 57.825 36.000 29.66 19.73 44.77 3.56
2787 3270 7.615403 ACATACGGATGTATCTAGATGCATTT 58.385 34.615 29.66 21.00 44.77 2.32
2788 3271 8.097038 ACATACGGATGTATCTAGATGCATTTT 58.903 33.333 29.66 20.74 44.77 1.82
2789 3272 9.586435 CATACGGATGTATCTAGATGCATTTTA 57.414 33.333 29.66 21.80 42.77 1.52
2790 3273 9.809096 ATACGGATGTATCTAGATGCATTTTAG 57.191 33.333 29.66 22.88 42.77 1.85
2791 3274 7.896811 ACGGATGTATCTAGATGCATTTTAGA 58.103 34.615 29.66 18.53 42.77 2.10
2792 3275 8.031864 ACGGATGTATCTAGATGCATTTTAGAG 58.968 37.037 29.66 20.36 42.77 2.43
2793 3276 8.031864 CGGATGTATCTAGATGCATTTTAGAGT 58.968 37.037 29.66 12.13 42.77 3.24
2814 3297 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
2815 3298 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
2816 3299 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
2817 3300 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2818 3301 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2819 3302 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2820 3303 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2821 3304 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2822 3305 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
2823 3306 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
2824 3307 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
2825 3308 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
2826 3309 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
2827 3310 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
2828 3311 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
2829 3312 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
2830 3313 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
2831 3314 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
2832 3315 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
2833 3316 2.956333 CTCCGTATGTGGTCCATAGTGA 59.044 50.000 0.00 0.00 36.71 3.41
2834 3317 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
2835 3318 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
2836 3319 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
2837 3320 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
2838 3321 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
2839 3322 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
2840 3323 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
2841 3324 5.344743 TGTGGTCCATAGTGAAATCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
2842 3325 4.162320 TGTGGTCCATAGTGAAATCTCTCC 59.838 45.833 0.00 0.00 0.00 3.71
2843 3326 4.162320 GTGGTCCATAGTGAAATCTCTCCA 59.838 45.833 0.00 0.00 0.00 3.86
2844 3327 4.782691 TGGTCCATAGTGAAATCTCTCCAA 59.217 41.667 0.00 0.00 0.00 3.53
2845 3328 5.250543 TGGTCCATAGTGAAATCTCTCCAAA 59.749 40.000 0.00 0.00 0.00 3.28
2846 3329 5.819901 GGTCCATAGTGAAATCTCTCCAAAG 59.180 44.000 0.00 0.00 0.00 2.77
2847 3330 6.352222 GGTCCATAGTGAAATCTCTCCAAAGA 60.352 42.308 0.00 0.00 0.00 2.52
2848 3331 6.536941 GTCCATAGTGAAATCTCTCCAAAGAC 59.463 42.308 0.00 0.00 0.00 3.01
2849 3332 6.441924 TCCATAGTGAAATCTCTCCAAAGACT 59.558 38.462 0.00 0.00 0.00 3.24
2850 3333 7.038017 TCCATAGTGAAATCTCTCCAAAGACTT 60.038 37.037 0.00 0.00 0.00 3.01
2851 3334 8.260818 CCATAGTGAAATCTCTCCAAAGACTTA 58.739 37.037 0.00 0.00 0.00 2.24
2852 3335 9.829507 CATAGTGAAATCTCTCCAAAGACTTAT 57.170 33.333 0.00 0.00 0.00 1.73
2863 3346 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
2864 3347 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2865 3348 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
2866 3349 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
2867 3350 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
2868 3351 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2869 3352 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
2870 3353 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
2918 3405 9.769093 ATTGTAGCTTTATTTTTACACGATCAC 57.231 29.630 0.00 0.00 0.00 3.06
2936 3430 5.445939 CGATCACACTACCTTTTGTATGCAC 60.446 44.000 0.00 0.00 0.00 4.57
2937 3431 4.968259 TCACACTACCTTTTGTATGCACT 58.032 39.130 0.00 0.00 0.00 4.40
2938 3432 6.104146 TCACACTACCTTTTGTATGCACTA 57.896 37.500 0.00 0.00 0.00 2.74
2969 3463 7.487829 CAGCTAAACTGTGTTGTTGTATTTGTT 59.512 33.333 0.00 0.00 41.86 2.83
2979 3473 9.349145 GTGTTGTTGTATTTGTTTTCAGTAGTT 57.651 29.630 0.00 0.00 0.00 2.24
3034 3546 9.342308 TGAATTTATGGCTTTCTCTATGGTTAG 57.658 33.333 0.00 0.00 0.00 2.34
3035 3547 7.751768 ATTTATGGCTTTCTCTATGGTTAGC 57.248 36.000 0.00 0.00 0.00 3.09
3037 3549 4.568072 TGGCTTTCTCTATGGTTAGCAA 57.432 40.909 0.00 0.00 0.00 3.91
3039 3551 4.943705 TGGCTTTCTCTATGGTTAGCAAAG 59.056 41.667 0.00 0.00 32.97 2.77
3040 3552 4.944317 GGCTTTCTCTATGGTTAGCAAAGT 59.056 41.667 0.00 0.00 32.70 2.66
3041 3553 5.163713 GGCTTTCTCTATGGTTAGCAAAGTG 60.164 44.000 0.00 0.00 32.70 3.16
3042 3554 5.163713 GCTTTCTCTATGGTTAGCAAAGTGG 60.164 44.000 0.00 0.00 32.70 4.00
3197 3721 0.460811 CGCTGATGCTGCTCAGGTAA 60.461 55.000 21.93 0.00 42.42 2.85
3234 3758 6.513806 TGTCATTAATCATTGTTGGTGAGG 57.486 37.500 0.00 0.00 0.00 3.86
3336 3860 2.682856 TGTCTCAAAACTGTGAACCTGC 59.317 45.455 0.00 0.00 0.00 4.85
3381 3905 8.458843 CCTTTCCTGTATGATTCGTGTTTATTT 58.541 33.333 0.00 0.00 0.00 1.40
3508 4032 6.003950 TGCTATCCCAAAGGCTATATCAAAC 58.996 40.000 0.00 0.00 0.00 2.93
3586 4110 7.773224 TCGGTATGTGAATGGTCTTTTCATATT 59.227 33.333 1.86 0.00 36.62 1.28
3587 4111 9.051679 CGGTATGTGAATGGTCTTTTCATATTA 57.948 33.333 1.86 0.00 36.62 0.98
3647 4176 7.069986 TGAGGGTGAGACTTAGCTATATTCTT 58.930 38.462 0.00 0.00 0.00 2.52
3648 4177 7.014711 TGAGGGTGAGACTTAGCTATATTCTTG 59.985 40.741 0.00 0.00 0.00 3.02
3649 4178 6.841755 AGGGTGAGACTTAGCTATATTCTTGT 59.158 38.462 0.00 0.00 0.00 3.16
3733 4265 8.750298 AGCTGCTAAACTTCAGTAAACTATCTA 58.250 33.333 0.00 0.00 33.09 1.98
4011 4604 9.036980 TCTCTCCTCTTAAGCTAAAACAATAGT 57.963 33.333 0.00 0.00 0.00 2.12
4083 4676 8.394971 TGGTATAGTTGCATCCAATTTCATAG 57.605 34.615 0.00 0.00 32.75 2.23
4158 4751 1.073548 GTTTGGGGTTGCCGGAGTA 59.926 57.895 5.05 0.00 0.00 2.59
4263 4856 6.365520 AAAGAAGTCTTGTGGTCTTTACCAT 58.634 36.000 0.00 0.00 45.88 3.55
4285 4981 2.857152 GCTGACGATCTGACTTGATGAC 59.143 50.000 0.00 0.00 0.00 3.06
4297 4993 1.063616 CTTGATGACGATGCAGGCAAG 59.936 52.381 0.00 0.00 30.05 4.01
4340 5040 2.159841 CGCTGTGATGTGAAGTTTACCG 60.160 50.000 0.00 0.00 0.00 4.02
4346 5046 2.605837 TGTGAAGTTTACCGTGAGCA 57.394 45.000 0.00 0.00 0.00 4.26
4348 5048 2.805671 TGTGAAGTTTACCGTGAGCATG 59.194 45.455 0.00 0.00 0.00 4.06
4384 5084 4.577283 GCTGAGGTGTAAAGGTTGTTGTAA 59.423 41.667 0.00 0.00 0.00 2.41
4395 5095 6.673154 AAGGTTGTTGTAAGTTGACTGTAC 57.327 37.500 0.00 0.00 0.00 2.90
4408 5133 2.628178 TGACTGTACCTTGTGTGAGGAG 59.372 50.000 0.00 0.00 39.25 3.69
4422 5147 2.766263 GTGAGGAGTGATCCATGGTGTA 59.234 50.000 12.58 0.00 0.00 2.90
4424 5149 4.040047 TGAGGAGTGATCCATGGTGTATT 58.960 43.478 12.58 0.00 0.00 1.89
4425 5150 5.070446 GTGAGGAGTGATCCATGGTGTATTA 59.930 44.000 12.58 0.00 0.00 0.98
4426 5151 5.305386 TGAGGAGTGATCCATGGTGTATTAG 59.695 44.000 12.58 0.00 0.00 1.73
4427 5152 4.594920 AGGAGTGATCCATGGTGTATTAGG 59.405 45.833 12.58 0.00 0.00 2.69
4428 5153 4.348168 GGAGTGATCCATGGTGTATTAGGT 59.652 45.833 12.58 0.00 0.00 3.08
4429 5154 5.511545 GGAGTGATCCATGGTGTATTAGGTC 60.512 48.000 12.58 0.00 0.00 3.85
4448 5451 2.156504 GTCGGAACATGATGCATCGATC 59.843 50.000 21.34 15.18 0.00 3.69
4525 5533 6.203145 TCAGCGACTAGATGTAGTAAGATGAC 59.797 42.308 16.58 0.00 39.78 3.06
4591 5605 9.672086 GTAAATGTTGTGAAGCAAATAACTGTA 57.328 29.630 0.00 0.00 39.03 2.74
4608 5622 5.422214 ACTGTATAACTGGGAGTTCCTTG 57.578 43.478 0.00 0.00 39.51 3.61
4609 5623 4.225267 ACTGTATAACTGGGAGTTCCTTGG 59.775 45.833 0.00 0.00 39.51 3.61
4613 5627 0.401395 ACTGGGAGTTCCTTGGTGGA 60.401 55.000 0.00 0.00 44.51 4.02
4614 5628 0.995024 CTGGGAGTTCCTTGGTGGAT 59.005 55.000 0.00 0.00 45.68 3.41
4626 5640 5.027460 TCCTTGGTGGATAGCTTTGTACTA 58.973 41.667 0.00 0.00 40.56 1.82
4658 5672 1.908619 GGATGGCTTTTGGTTCCCATT 59.091 47.619 0.00 0.00 38.15 3.16
4659 5673 2.355007 GGATGGCTTTTGGTTCCCATTG 60.355 50.000 0.00 0.00 38.15 2.82
4660 5674 1.799933 TGGCTTTTGGTTCCCATTGT 58.200 45.000 0.00 0.00 31.53 2.71
4661 5675 2.122768 TGGCTTTTGGTTCCCATTGTT 58.877 42.857 0.00 0.00 31.53 2.83
4662 5676 2.507471 TGGCTTTTGGTTCCCATTGTTT 59.493 40.909 0.00 0.00 31.53 2.83
4663 5677 2.877786 GGCTTTTGGTTCCCATTGTTTG 59.122 45.455 0.00 0.00 31.53 2.93
4664 5678 2.290367 GCTTTTGGTTCCCATTGTTTGC 59.710 45.455 0.00 0.00 31.53 3.68
4665 5679 2.629336 TTTGGTTCCCATTGTTTGCC 57.371 45.000 0.00 0.00 31.53 4.52
4666 5680 1.500474 TTGGTTCCCATTGTTTGCCA 58.500 45.000 0.00 0.00 31.53 4.92
4667 5681 0.755686 TGGTTCCCATTGTTTGCCAC 59.244 50.000 0.00 0.00 0.00 5.01
4669 5683 1.000843 GGTTCCCATTGTTTGCCACTC 59.999 52.381 0.00 0.00 0.00 3.51
4670 5684 1.000843 GTTCCCATTGTTTGCCACTCC 59.999 52.381 0.00 0.00 0.00 3.85
4671 5685 0.187117 TCCCATTGTTTGCCACTCCA 59.813 50.000 0.00 0.00 0.00 3.86
4672 5686 0.604578 CCCATTGTTTGCCACTCCAG 59.395 55.000 0.00 0.00 0.00 3.86
4673 5687 0.604578 CCATTGTTTGCCACTCCAGG 59.395 55.000 0.00 0.00 0.00 4.45
4674 5688 0.604578 CATTGTTTGCCACTCCAGGG 59.395 55.000 0.00 0.00 0.00 4.45
4675 5689 0.542702 ATTGTTTGCCACTCCAGGGG 60.543 55.000 0.00 0.00 0.00 4.79
4676 5690 1.650242 TTGTTTGCCACTCCAGGGGA 61.650 55.000 0.00 0.00 0.00 4.81
4685 5699 3.567902 CTCCAGGGGAGCCTAGATT 57.432 57.895 0.00 0.00 43.29 2.40
4686 5700 1.813102 CTCCAGGGGAGCCTAGATTT 58.187 55.000 0.00 0.00 43.29 2.17
4687 5701 2.977808 CTCCAGGGGAGCCTAGATTTA 58.022 52.381 0.00 0.00 43.29 1.40
4688 5702 2.635427 CTCCAGGGGAGCCTAGATTTAC 59.365 54.545 0.00 0.00 43.29 2.01
4693 5707 2.028020 GGGGAGCCTAGATTTACGGATG 60.028 54.545 0.00 0.00 0.00 3.51
4695 5709 3.056465 GGGAGCCTAGATTTACGGATGAG 60.056 52.174 0.00 0.00 0.00 2.90
4704 5718 3.410631 TTTACGGATGAGAACCAAGCA 57.589 42.857 0.00 0.00 0.00 3.91
4721 5743 4.323417 CAAGCAAGTATAGTTGGTGTGGA 58.677 43.478 22.29 0.00 38.16 4.02
4722 5744 4.844349 AGCAAGTATAGTTGGTGTGGAT 57.156 40.909 21.23 0.00 36.79 3.41
4723 5745 4.517285 AGCAAGTATAGTTGGTGTGGATG 58.483 43.478 21.23 0.00 36.79 3.51
4725 5747 5.104360 AGCAAGTATAGTTGGTGTGGATGAT 60.104 40.000 21.23 0.00 36.79 2.45
4726 5748 5.008019 GCAAGTATAGTTGGTGTGGATGATG 59.992 44.000 19.53 0.00 0.00 3.07
4728 5750 3.582998 ATAGTTGGTGTGGATGATGGG 57.417 47.619 0.00 0.00 0.00 4.00
4729 5751 1.371467 AGTTGGTGTGGATGATGGGA 58.629 50.000 0.00 0.00 0.00 4.37
4730 5752 1.283029 AGTTGGTGTGGATGATGGGAG 59.717 52.381 0.00 0.00 0.00 4.30
4731 5753 1.004745 GTTGGTGTGGATGATGGGAGT 59.995 52.381 0.00 0.00 0.00 3.85
4733 5755 2.118679 TGGTGTGGATGATGGGAGTAG 58.881 52.381 0.00 0.00 0.00 2.57
4735 5757 2.771943 GGTGTGGATGATGGGAGTAGAA 59.228 50.000 0.00 0.00 0.00 2.10
4736 5758 3.432326 GGTGTGGATGATGGGAGTAGAAC 60.432 52.174 0.00 0.00 0.00 3.01
4737 5759 2.771943 TGTGGATGATGGGAGTAGAACC 59.228 50.000 0.00 0.00 0.00 3.62
4738 5760 2.771943 GTGGATGATGGGAGTAGAACCA 59.228 50.000 0.00 0.00 41.76 3.67
4739 5761 3.199946 GTGGATGATGGGAGTAGAACCAA 59.800 47.826 0.00 0.00 40.73 3.67
4740 5762 3.455910 TGGATGATGGGAGTAGAACCAAG 59.544 47.826 0.00 0.00 40.73 3.61
4741 5763 3.471680 GATGATGGGAGTAGAACCAAGC 58.528 50.000 0.00 0.00 40.73 4.01
4742 5764 2.265367 TGATGGGAGTAGAACCAAGCA 58.735 47.619 0.00 0.00 40.73 3.91
4743 5765 2.642311 TGATGGGAGTAGAACCAAGCAA 59.358 45.455 0.00 0.00 40.73 3.91
4752 5774 4.962995 AGTAGAACCAAGCAAGCTAGGATA 59.037 41.667 0.00 0.00 0.00 2.59
4880 5905 1.009829 GATTAAGCCCAGACGTGCTG 58.990 55.000 0.00 0.00 44.49 4.41
4884 5909 4.687215 GCCCAGACGTGCTGAGCA 62.687 66.667 1.40 1.40 46.55 4.26
4888 5913 2.356793 AGACGTGCTGAGCAGTGC 60.357 61.111 7.71 7.13 40.08 4.40
4889 5914 2.662857 GACGTGCTGAGCAGTGCA 60.663 61.111 19.20 0.00 40.08 4.57
4890 5915 2.664185 ACGTGCTGAGCAGTGCAG 60.664 61.111 19.20 8.07 40.08 4.41
4891 5916 3.420606 CGTGCTGAGCAGTGCAGG 61.421 66.667 19.20 7.72 40.08 4.85
4892 5917 2.031616 GTGCTGAGCAGTGCAGGA 59.968 61.111 19.20 5.09 40.08 3.86
4893 5918 1.598962 GTGCTGAGCAGTGCAGGAA 60.599 57.895 19.20 0.00 40.08 3.36
4894 5919 1.148949 TGCTGAGCAGTGCAGGAAA 59.851 52.632 19.20 0.00 34.84 3.13
4895 5920 0.251033 TGCTGAGCAGTGCAGGAAAT 60.251 50.000 19.20 0.00 34.84 2.17
4896 5921 0.450983 GCTGAGCAGTGCAGGAAATC 59.549 55.000 19.20 5.31 34.00 2.17
4897 5922 1.093159 CTGAGCAGTGCAGGAAATCC 58.907 55.000 19.20 0.00 0.00 3.01
4898 5923 0.674581 TGAGCAGTGCAGGAAATCCG 60.675 55.000 19.20 0.00 42.08 4.18
4899 5924 1.372087 GAGCAGTGCAGGAAATCCGG 61.372 60.000 19.20 0.00 42.08 5.14
4900 5925 2.409870 GCAGTGCAGGAAATCCGGG 61.410 63.158 11.09 0.00 42.08 5.73
4901 5926 1.299648 CAGTGCAGGAAATCCGGGA 59.700 57.895 0.00 0.00 42.08 5.14
4902 5927 0.745845 CAGTGCAGGAAATCCGGGAG 60.746 60.000 0.00 0.00 42.08 4.30
4903 5928 1.201429 AGTGCAGGAAATCCGGGAGT 61.201 55.000 0.00 0.00 42.08 3.85
4904 5929 0.539986 GTGCAGGAAATCCGGGAGTA 59.460 55.000 0.00 0.00 42.08 2.59
4905 5930 1.065709 GTGCAGGAAATCCGGGAGTAA 60.066 52.381 0.00 0.00 42.08 2.24
4906 5931 1.631388 TGCAGGAAATCCGGGAGTAAA 59.369 47.619 0.00 0.00 42.08 2.01
4907 5932 2.040545 TGCAGGAAATCCGGGAGTAAAA 59.959 45.455 0.00 0.00 42.08 1.52
4908 5933 3.086282 GCAGGAAATCCGGGAGTAAAAA 58.914 45.455 0.00 0.00 42.08 1.94
4909 5934 3.128764 GCAGGAAATCCGGGAGTAAAAAG 59.871 47.826 0.00 0.00 42.08 2.27
4910 5935 4.332828 CAGGAAATCCGGGAGTAAAAAGT 58.667 43.478 0.00 0.00 42.08 2.66
4911 5936 4.765339 CAGGAAATCCGGGAGTAAAAAGTT 59.235 41.667 0.00 0.00 42.08 2.66
4912 5937 4.765339 AGGAAATCCGGGAGTAAAAAGTTG 59.235 41.667 0.00 0.00 42.08 3.16
4913 5938 4.082408 GGAAATCCGGGAGTAAAAAGTTGG 60.082 45.833 0.00 0.00 0.00 3.77
4914 5939 3.801307 ATCCGGGAGTAAAAAGTTGGT 57.199 42.857 0.00 0.00 0.00 3.67
4915 5940 3.581265 TCCGGGAGTAAAAAGTTGGTT 57.419 42.857 0.00 0.00 0.00 3.67
4944 5990 2.587194 CCGAGCGATCCTTGGCTG 60.587 66.667 0.00 0.00 38.28 4.85
4947 5993 2.124819 AGCGATCCTTGGCTGCTG 60.125 61.111 0.00 0.00 35.37 4.41
4950 5996 2.470362 CGATCCTTGGCTGCTGCTG 61.470 63.158 15.64 0.77 39.59 4.41
4964 6010 3.743521 TGCTGCTGCTTCTTCTTCTTTA 58.256 40.909 17.00 0.00 40.48 1.85
4965 6011 3.750130 TGCTGCTGCTTCTTCTTCTTTAG 59.250 43.478 17.00 0.00 40.48 1.85
4966 6012 3.999663 GCTGCTGCTTCTTCTTCTTTAGA 59.000 43.478 8.53 0.00 36.03 2.10
4967 6013 4.093261 GCTGCTGCTTCTTCTTCTTTAGAG 59.907 45.833 8.53 0.00 33.27 2.43
4968 6014 5.220710 TGCTGCTTCTTCTTCTTTAGAGT 57.779 39.130 0.00 0.00 33.51 3.24
4969 6015 5.615289 TGCTGCTTCTTCTTCTTTAGAGTT 58.385 37.500 0.00 0.00 33.51 3.01
4970 6016 6.058183 TGCTGCTTCTTCTTCTTTAGAGTTT 58.942 36.000 0.00 0.00 33.51 2.66
4971 6017 6.203723 TGCTGCTTCTTCTTCTTTAGAGTTTC 59.796 38.462 0.00 0.00 33.51 2.78
4975 6021 8.616076 TGCTTCTTCTTCTTTAGAGTTTCTTTG 58.384 33.333 0.00 0.00 33.51 2.77
4996 6042 9.191995 TCTTTGTTGTTGAAGAAAAGAAAAGAC 57.808 29.630 0.00 0.00 0.00 3.01
5036 6082 5.340803 GGTTTCCATTAAGCGAAATTCCTC 58.659 41.667 3.77 0.00 31.10 3.71
5040 6086 5.745227 TCCATTAAGCGAAATTCCTCTTCT 58.255 37.500 0.00 0.00 0.00 2.85
5095 6141 1.530655 CCCTTTCCCCACGTTGCTT 60.531 57.895 0.00 0.00 0.00 3.91
5096 6142 0.250989 CCCTTTCCCCACGTTGCTTA 60.251 55.000 0.00 0.00 0.00 3.09
5097 6143 1.165270 CCTTTCCCCACGTTGCTTAG 58.835 55.000 0.00 0.00 0.00 2.18
5099 6145 2.289819 CCTTTCCCCACGTTGCTTAGTA 60.290 50.000 0.00 0.00 0.00 1.82
5100 6146 2.460757 TTCCCCACGTTGCTTAGTAC 57.539 50.000 0.00 0.00 0.00 2.73
5103 6149 1.405121 CCCCACGTTGCTTAGTACTCC 60.405 57.143 0.00 0.00 0.00 3.85
5104 6150 1.405121 CCCACGTTGCTTAGTACTCCC 60.405 57.143 0.00 0.00 0.00 4.30
5105 6151 1.549170 CCACGTTGCTTAGTACTCCCT 59.451 52.381 0.00 0.00 0.00 4.20
5106 6152 2.416972 CCACGTTGCTTAGTACTCCCTC 60.417 54.545 0.00 0.00 0.00 4.30
5108 6154 2.492484 ACGTTGCTTAGTACTCCCTCTG 59.508 50.000 0.00 0.00 0.00 3.35
5109 6155 2.492484 CGTTGCTTAGTACTCCCTCTGT 59.508 50.000 0.00 0.00 0.00 3.41
5110 6156 3.693085 CGTTGCTTAGTACTCCCTCTGTA 59.307 47.826 0.00 0.00 0.00 2.74
5112 6158 5.336213 CGTTGCTTAGTACTCCCTCTGTAAA 60.336 44.000 0.00 0.00 0.00 2.01
5113 6159 5.656213 TGCTTAGTACTCCCTCTGTAAAC 57.344 43.478 0.00 0.00 0.00 2.01
5114 6160 5.331069 TGCTTAGTACTCCCTCTGTAAACT 58.669 41.667 0.00 0.00 0.00 2.66
5115 6161 6.487828 TGCTTAGTACTCCCTCTGTAAACTA 58.512 40.000 0.00 0.00 0.00 2.24
5116 6162 6.950041 TGCTTAGTACTCCCTCTGTAAACTAA 59.050 38.462 0.00 0.00 0.00 2.24
5117 6163 7.618512 TGCTTAGTACTCCCTCTGTAAACTAAT 59.381 37.037 0.00 0.00 0.00 1.73
5118 6164 9.129532 GCTTAGTACTCCCTCTGTAAACTAATA 57.870 37.037 0.00 0.00 0.00 0.98
5212 6258 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
5213 6259 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
5296 6446 3.580458 AGAGAGACTAAATGCACCACAGT 59.420 43.478 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.337865 GTTGCTGTGTTGGTGCAATACAC 61.338 47.826 16.22 16.22 46.25 2.90
90 91 2.769539 CCGTTGCTGTGTTGGTGCA 61.770 57.895 0.00 0.00 34.69 4.57
91 92 2.026014 CCGTTGCTGTGTTGGTGC 59.974 61.111 0.00 0.00 0.00 5.01
102 103 5.176958 CACTTTGTATATACCTAGCCGTTGC 59.823 44.000 10.38 0.00 37.95 4.17
108 109 7.787725 AGTTTGCACTTTGTATATACCTAGC 57.212 36.000 10.38 7.87 0.00 3.42
131 132 3.009140 CAGCGCTCGCCATTGTAG 58.991 61.111 7.13 0.00 43.17 2.74
135 136 4.107051 GTTGCAGCGCTCGCCATT 62.107 61.111 22.98 0.00 43.17 3.16
138 139 4.527157 GATGTTGCAGCGCTCGCC 62.527 66.667 22.98 12.78 43.17 5.54
144 145 1.939974 TAGCTAAGGATGTTGCAGCG 58.060 50.000 0.00 0.00 37.32 5.18
187 188 0.908198 GCAGGGAGGCCATAGGATAG 59.092 60.000 5.01 0.00 0.00 2.08
189 190 3.913107 GCAGGGAGGCCATAGGAT 58.087 61.111 5.01 0.00 0.00 3.24
288 289 3.565214 TGGCCGCTCTTTGGGTCA 61.565 61.111 0.00 0.00 35.08 4.02
315 316 2.580815 CTGGCGAGGTCATGCTCA 59.419 61.111 0.00 0.00 0.00 4.26
356 357 2.251642 GCGTTCTTCTTGGCGGTGT 61.252 57.895 0.00 0.00 0.00 4.16
378 379 1.000283 CCACCTAGGTCGCAGATGATC 60.000 57.143 12.84 0.00 40.67 2.92
379 380 1.043816 CCACCTAGGTCGCAGATGAT 58.956 55.000 12.84 0.00 40.67 2.45
465 466 1.810030 GTCGACCATGAGTTCGGCC 60.810 63.158 3.51 0.00 0.00 6.13
466 467 2.158959 CGTCGACCATGAGTTCGGC 61.159 63.158 10.58 8.20 0.00 5.54
520 521 0.109272 TCGGACACGATCTTCAGTGC 60.109 55.000 0.00 0.00 45.59 4.40
595 596 2.271821 CATGTCGGCCATGGGTGA 59.728 61.111 15.13 0.00 46.03 4.02
601 602 2.281070 GCGATCCATGTCGGCCAT 60.281 61.111 2.24 0.00 41.72 4.40
639 640 2.994995 ATGAGGTCACCGGCGACA 60.995 61.111 23.31 4.34 37.66 4.35
667 668 1.935933 ATTATCGGTCACTTGGCGAC 58.064 50.000 0.00 0.00 0.00 5.19
670 671 6.560253 ATGATTTATTATCGGTCACTTGGC 57.440 37.500 0.00 0.00 0.00 4.52
730 983 2.802247 GCCAGCATTTTGTTTTCTCCAC 59.198 45.455 0.00 0.00 0.00 4.02
731 984 2.699846 AGCCAGCATTTTGTTTTCTCCA 59.300 40.909 0.00 0.00 0.00 3.86
732 985 3.391506 AGCCAGCATTTTGTTTTCTCC 57.608 42.857 0.00 0.00 0.00 3.71
733 986 5.739752 AAAAGCCAGCATTTTGTTTTCTC 57.260 34.783 0.00 0.00 0.00 2.87
761 1025 5.237048 GCCCAGCATTTGTTTTATTCTCAA 58.763 37.500 0.00 0.00 0.00 3.02
762 1026 4.322650 GGCCCAGCATTTGTTTTATTCTCA 60.323 41.667 0.00 0.00 0.00 3.27
765 1029 3.934579 CTGGCCCAGCATTTGTTTTATTC 59.065 43.478 0.00 0.00 0.00 1.75
766 1030 3.327464 ACTGGCCCAGCATTTGTTTTATT 59.673 39.130 11.63 0.00 34.37 1.40
768 1032 2.298729 GACTGGCCCAGCATTTGTTTTA 59.701 45.455 11.63 0.00 34.37 1.52
773 1037 1.065199 TCTAGACTGGCCCAGCATTTG 60.065 52.381 11.63 0.00 34.37 2.32
775 1039 1.211457 CTTCTAGACTGGCCCAGCATT 59.789 52.381 11.63 0.00 34.37 3.56
849 1115 2.100916 ACGGTCTGATCGGTTAGAATGG 59.899 50.000 15.53 0.00 0.00 3.16
851 1117 2.361438 GGACGGTCTGATCGGTTAGAAT 59.639 50.000 15.53 0.00 0.00 2.40
852 1118 1.747355 GGACGGTCTGATCGGTTAGAA 59.253 52.381 15.53 0.00 0.00 2.10
853 1119 1.386533 GGACGGTCTGATCGGTTAGA 58.613 55.000 15.53 0.00 0.00 2.10
855 1121 0.033796 AGGGACGGTCTGATCGGTTA 60.034 55.000 15.53 0.00 0.00 2.85
856 1122 1.305046 AGGGACGGTCTGATCGGTT 60.305 57.895 15.53 0.00 0.00 4.44
857 1123 1.753463 GAGGGACGGTCTGATCGGT 60.753 63.158 15.53 0.07 0.00 4.69
858 1124 1.448922 GAGAGGGACGGTCTGATCGG 61.449 65.000 15.53 0.00 0.00 4.18
861 1127 2.122167 GCGAGAGGGACGGTCTGAT 61.122 63.158 8.23 0.00 0.00 2.90
862 1128 2.750637 GCGAGAGGGACGGTCTGA 60.751 66.667 8.23 0.00 0.00 3.27
863 1129 3.827898 GGCGAGAGGGACGGTCTG 61.828 72.222 8.23 0.00 0.00 3.51
899 1191 2.838736 CCGGAGAGAGAGAAGAGAGAG 58.161 57.143 0.00 0.00 0.00 3.20
900 1192 1.134220 GCCGGAGAGAGAGAAGAGAGA 60.134 57.143 5.05 0.00 0.00 3.10
903 1195 0.395036 TGGCCGGAGAGAGAGAAGAG 60.395 60.000 5.05 0.00 0.00 2.85
904 1196 0.039764 TTGGCCGGAGAGAGAGAAGA 59.960 55.000 5.05 0.00 0.00 2.87
905 1197 0.898320 TTTGGCCGGAGAGAGAGAAG 59.102 55.000 5.05 0.00 0.00 2.85
906 1198 1.482593 GATTTGGCCGGAGAGAGAGAA 59.517 52.381 5.05 0.00 0.00 2.87
951 1248 0.260523 GCTCCTACCCCTCTGTCTCT 59.739 60.000 0.00 0.00 0.00 3.10
1162 1472 2.168728 CGGGGGAGTAAGAAAGAAGAGG 59.831 54.545 0.00 0.00 0.00 3.69
1241 1574 5.359756 TGATCAATCAACCGGATGTAAGAG 58.640 41.667 9.46 0.00 36.02 2.85
1253 1586 1.596727 GAGAGCGCCTGATCAATCAAC 59.403 52.381 2.29 0.00 36.18 3.18
1429 1762 3.913163 GAGATGGATTACCCTTCATCCCT 59.087 47.826 0.00 0.00 40.54 4.20
1453 1794 2.218603 ACAAGCAACTTTCGTAGGTGG 58.781 47.619 7.31 0.00 42.15 4.61
1461 1802 4.098416 GTGACAACTGACAAGCAACTTTC 58.902 43.478 0.00 0.00 0.00 2.62
1500 1843 1.109323 AAGGAGCAGGCCAACAACAC 61.109 55.000 5.01 0.00 0.00 3.32
1519 1862 2.959372 GCAAGCATGACAGCTGCA 59.041 55.556 15.27 13.46 45.89 4.41
1540 1883 0.904865 TCCCCAGCTGAATCGACTGT 60.905 55.000 17.39 0.00 0.00 3.55
1655 1998 2.092323 GGCTCCACCGAAAGCTAAAAT 58.908 47.619 0.00 0.00 38.58 1.82
1658 2001 0.036388 CTGGCTCCACCGAAAGCTAA 60.036 55.000 0.00 0.00 43.94 3.09
1787 2130 1.886422 TATACACATCCCACAGCCCA 58.114 50.000 0.00 0.00 0.00 5.36
1791 2134 6.772233 TGGAAATCATTATACACATCCCACAG 59.228 38.462 0.00 0.00 0.00 3.66
1881 2224 5.049818 CGTTCAGATAAGGATCAGAAATGCC 60.050 44.000 0.00 0.00 38.77 4.40
1902 2245 7.136289 TGTACAAAAAGTCTGAAAGTTCGTT 57.864 32.000 0.00 0.00 33.76 3.85
1903 2246 6.674760 GCTGTACAAAAAGTCTGAAAGTTCGT 60.675 38.462 0.00 0.00 33.76 3.85
1904 2247 5.677178 GCTGTACAAAAAGTCTGAAAGTTCG 59.323 40.000 0.00 0.00 33.76 3.95
1906 2249 6.759497 AGCTGTACAAAAAGTCTGAAAGTT 57.241 33.333 0.00 0.00 33.76 2.66
1907 2250 7.272978 TCTAGCTGTACAAAAAGTCTGAAAGT 58.727 34.615 0.00 0.00 33.76 2.66
1908 2251 7.715265 TCTAGCTGTACAAAAAGTCTGAAAG 57.285 36.000 0.00 0.00 0.00 2.62
1942 2285 5.185249 AGCAAAGTCCGTTCAGATAAGTAGA 59.815 40.000 0.00 0.00 0.00 2.59
1946 2289 4.499183 AGAGCAAAGTCCGTTCAGATAAG 58.501 43.478 0.00 0.00 0.00 1.73
1958 2301 5.007528 GCATCCTAGATGAAAGAGCAAAGTC 59.992 44.000 8.74 0.00 0.00 3.01
1974 2317 3.323115 TCTGGACAGCATAAGCATCCTAG 59.677 47.826 12.71 9.24 44.44 3.02
1989 2332 0.671472 CGTGCTCATTGCTCTGGACA 60.671 55.000 0.00 0.00 43.37 4.02
2007 2350 0.382158 TGTCTCGAGCTGCTATTCCG 59.618 55.000 7.81 1.54 0.00 4.30
2066 2409 1.977854 GAGTTTTGGGCCCCTCAAATT 59.022 47.619 22.27 12.46 34.58 1.82
2076 2419 7.448748 TTTATACAGAAGAAGAGTTTTGGGC 57.551 36.000 0.00 0.00 0.00 5.36
2110 2456 9.762381 AATAGATGGTTGAAATTGGTACCTAAA 57.238 29.630 14.36 0.00 0.00 1.85
2128 2474 4.588899 TCAACCTGGTCAACAATAGATGG 58.411 43.478 0.00 0.00 0.00 3.51
2193 2539 4.530161 ACTACCTTTGCAAGACTCTCATCT 59.470 41.667 0.00 0.00 0.00 2.90
2304 2656 6.408035 TCCGCAATAGTAAAACTGAACCATA 58.592 36.000 0.00 0.00 0.00 2.74
2410 2785 2.881074 CTTCACTGGATCGTACTGTGG 58.119 52.381 11.34 0.00 38.05 4.17
2445 2820 2.735444 GCCATTCTTCTTAAAAGCCGGC 60.735 50.000 21.89 21.89 0.00 6.13
2510 2885 6.148480 ACAGTAAACGACTAGTCAGAATACGT 59.852 38.462 22.37 10.40 35.64 3.57
2515 2890 5.996513 AGAGACAGTAAACGACTAGTCAGAA 59.003 40.000 22.37 2.15 38.05 3.02
2534 2909 4.221041 ACCTAAGAAACTAGCCACAGAGAC 59.779 45.833 0.00 0.00 0.00 3.36
2556 2931 3.127425 ACTACTCTGCAAGGTTTCCAC 57.873 47.619 0.00 0.00 0.00 4.02
2587 2965 2.163815 GTGATAGCGTACTGGACAGTGT 59.836 50.000 14.86 0.00 42.52 3.55
2635 3013 6.152831 TCACAGAGCTCAAGTATTTACTAGCA 59.847 38.462 17.77 0.00 39.30 3.49
2643 3021 4.991153 TCGATCACAGAGCTCAAGTATT 57.009 40.909 17.77 4.86 0.00 1.89
2710 3193 3.705072 ACATTTAGGAACGGAGGGAGTAG 59.295 47.826 0.00 0.00 0.00 2.57
2711 3194 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
2712 3195 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
2713 3196 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2714 3197 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2715 3198 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2716 3199 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2717 3200 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
2718 3201 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
2719 3202 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
2720 3203 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
2721 3204 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
2733 3216 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
2734 3217 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
2735 3218 8.035394 TGTCCATAGTGAAATCTCTACAAAGAC 58.965 37.037 0.00 0.00 0.00 3.01
2736 3219 8.134202 TGTCCATAGTGAAATCTCTACAAAGA 57.866 34.615 0.00 0.00 0.00 2.52
2737 3220 8.660373 GTTGTCCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 0.00 2.77
2738 3221 8.154203 TGTTGTCCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 0.00 2.83
2739 3222 7.676004 TGTTGTCCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 0.00 2.41
2740 3223 7.239763 TGTTGTCCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 0.00 2.74
2741 3224 9.250624 GTATGTTGTCCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 36.71 2.59
2742 3225 8.135529 CGTATGTTGTCCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 36.71 2.43
2743 3226 6.980978 CGTATGTTGTCCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 36.71 3.10
2744 3227 6.201044 CCGTATGTTGTCCATAGTGAAATCTC 59.799 42.308 0.00 0.00 36.71 2.75
2745 3228 6.049149 CCGTATGTTGTCCATAGTGAAATCT 58.951 40.000 0.00 0.00 36.71 2.40
2746 3229 6.046593 TCCGTATGTTGTCCATAGTGAAATC 58.953 40.000 0.00 0.00 36.71 2.17
2747 3230 5.984725 TCCGTATGTTGTCCATAGTGAAAT 58.015 37.500 0.00 0.00 36.71 2.17
2748 3231 5.408880 TCCGTATGTTGTCCATAGTGAAA 57.591 39.130 0.00 0.00 36.71 2.69
2749 3232 5.105106 ACATCCGTATGTTGTCCATAGTGAA 60.105 40.000 0.00 0.00 44.07 3.18
2750 3233 4.404394 ACATCCGTATGTTGTCCATAGTGA 59.596 41.667 0.00 0.00 44.07 3.41
2751 3234 4.693283 ACATCCGTATGTTGTCCATAGTG 58.307 43.478 0.00 0.00 44.07 2.74
2752 3235 6.493802 AGATACATCCGTATGTTGTCCATAGT 59.506 38.462 0.00 0.00 44.07 2.12
2753 3236 6.925211 AGATACATCCGTATGTTGTCCATAG 58.075 40.000 0.00 0.00 44.07 2.23
2754 3237 6.911250 AGATACATCCGTATGTTGTCCATA 57.089 37.500 0.00 0.00 44.07 2.74
2755 3238 5.808366 AGATACATCCGTATGTTGTCCAT 57.192 39.130 0.00 0.00 44.07 3.41
2756 3239 6.066032 TCTAGATACATCCGTATGTTGTCCA 58.934 40.000 0.00 0.00 44.07 4.02
2757 3240 6.570672 TCTAGATACATCCGTATGTTGTCC 57.429 41.667 0.00 0.00 44.07 4.02
2758 3241 6.528423 GCATCTAGATACATCCGTATGTTGTC 59.472 42.308 4.54 0.00 44.07 3.18
2759 3242 6.015434 TGCATCTAGATACATCCGTATGTTGT 60.015 38.462 4.54 0.00 44.07 3.32
2760 3243 6.389906 TGCATCTAGATACATCCGTATGTTG 58.610 40.000 4.54 0.00 44.07 3.33
2761 3244 6.590234 TGCATCTAGATACATCCGTATGTT 57.410 37.500 4.54 0.00 44.07 2.71
2763 3246 8.484641 AAAATGCATCTAGATACATCCGTATG 57.515 34.615 17.09 0.00 38.48 2.39
2764 3247 9.809096 CTAAAATGCATCTAGATACATCCGTAT 57.191 33.333 17.09 0.85 41.16 3.06
2765 3248 9.020731 TCTAAAATGCATCTAGATACATCCGTA 57.979 33.333 17.09 9.71 0.00 4.02
2766 3249 7.896811 TCTAAAATGCATCTAGATACATCCGT 58.103 34.615 17.09 9.18 0.00 4.69
2767 3250 8.031864 ACTCTAAAATGCATCTAGATACATCCG 58.968 37.037 17.09 7.74 0.00 4.18
2788 3271 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
2789 3272 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
2790 3273 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
2791 3274 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
2792 3275 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
2793 3276 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
2794 3277 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
2795 3278 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2796 3279 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2797 3280 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2798 3281 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2799 3282 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
2800 3283 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
2801 3284 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
2802 3285 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
2803 3286 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
2804 3287 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
2805 3288 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
2806 3289 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
2807 3290 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
2808 3291 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
2809 3292 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
2810 3293 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
2811 3294 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
2812 3295 2.956333 TCACTATGGACCACATACGGAG 59.044 50.000 0.00 0.00 41.03 4.63
2813 3296 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
2814 3297 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
2815 3298 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
2816 3299 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
2817 3300 6.042093 GGAGAGATTTCACTATGGACCACATA 59.958 42.308 0.00 0.00 41.03 2.29
2818 3301 5.163258 GGAGAGATTTCACTATGGACCACAT 60.163 44.000 0.00 0.00 43.68 3.21
2819 3302 4.162320 GGAGAGATTTCACTATGGACCACA 59.838 45.833 0.00 0.00 0.00 4.17
2820 3303 4.162320 TGGAGAGATTTCACTATGGACCAC 59.838 45.833 0.00 0.00 0.00 4.16
2821 3304 4.361783 TGGAGAGATTTCACTATGGACCA 58.638 43.478 0.00 0.00 0.00 4.02
2822 3305 5.359194 TTGGAGAGATTTCACTATGGACC 57.641 43.478 0.00 0.00 0.00 4.46
2823 3306 6.536941 GTCTTTGGAGAGATTTCACTATGGAC 59.463 42.308 0.00 0.00 31.07 4.02
2824 3307 6.441924 AGTCTTTGGAGAGATTTCACTATGGA 59.558 38.462 0.00 0.00 31.07 3.41
2825 3308 6.648192 AGTCTTTGGAGAGATTTCACTATGG 58.352 40.000 0.00 0.00 31.07 2.74
2826 3309 9.829507 ATAAGTCTTTGGAGAGATTTCACTATG 57.170 33.333 0.00 0.00 31.07 2.23
2837 3320 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
2838 3321 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
2839 3322 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
2840 3323 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
2841 3324 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
2842 3325 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
2843 3326 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
2844 3327 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
2845 3328 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2846 3329 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2847 3330 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2848 3331 9.640963 CATACTTCCTCCGTTCCTAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
2849 3332 9.370930 TCATACTTCCTCCGTTCCTAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
2850 3333 8.945195 TCATACTTCCTCCGTTCCTAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
2851 3334 7.850935 TCATACTTCCTCCGTTCCTAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
2852 3335 7.850935 ATCATACTTCCTCCGTTCCTAAATA 57.149 36.000 0.00 0.00 0.00 1.40
2853 3336 6.749036 ATCATACTTCCTCCGTTCCTAAAT 57.251 37.500 0.00 0.00 0.00 1.40
2854 3337 6.837568 AGTATCATACTTCCTCCGTTCCTAAA 59.162 38.462 0.00 0.00 34.86 1.85
2855 3338 6.371278 AGTATCATACTTCCTCCGTTCCTAA 58.629 40.000 0.00 0.00 34.86 2.69
2856 3339 5.950023 AGTATCATACTTCCTCCGTTCCTA 58.050 41.667 0.00 0.00 34.86 2.94
2857 3340 4.805744 AGTATCATACTTCCTCCGTTCCT 58.194 43.478 0.00 0.00 34.86 3.36
2858 3341 5.532664 AAGTATCATACTTCCTCCGTTCC 57.467 43.478 4.03 0.00 45.38 3.62
2947 3441 9.692749 TGAAAACAAATACAACAACACAGTTTA 57.307 25.926 0.00 0.00 0.00 2.01
2999 3493 5.990120 AAGCCATAAATTCAAGCTTCAGT 57.010 34.783 0.00 0.00 39.50 3.41
3001 3495 6.435277 AGAGAAAGCCATAAATTCAAGCTTCA 59.565 34.615 0.00 0.00 42.69 3.02
3002 3496 6.861144 AGAGAAAGCCATAAATTCAAGCTTC 58.139 36.000 0.00 0.00 42.69 3.86
3003 3497 6.847421 AGAGAAAGCCATAAATTCAAGCTT 57.153 33.333 0.00 0.00 45.28 3.74
3008 3520 9.342308 CTAACCATAGAGAAAGCCATAAATTCA 57.658 33.333 0.00 0.00 0.00 2.57
3015 3527 4.778213 TGCTAACCATAGAGAAAGCCAT 57.222 40.909 0.00 0.00 0.00 4.40
3016 3528 4.568072 TTGCTAACCATAGAGAAAGCCA 57.432 40.909 0.00 0.00 0.00 4.75
3034 3546 4.142249 ACTTCCAAGTAAACACCACTTTGC 60.142 41.667 0.00 0.00 37.52 3.68
3035 3547 5.105917 ACACTTCCAAGTAAACACCACTTTG 60.106 40.000 0.00 0.00 37.08 2.77
3037 3549 4.595986 ACACTTCCAAGTAAACACCACTT 58.404 39.130 0.00 0.00 37.08 3.16
3039 3551 5.587443 AGTTACACTTCCAAGTAAACACCAC 59.413 40.000 14.59 0.00 37.08 4.16
3040 3552 5.587043 CAGTTACACTTCCAAGTAAACACCA 59.413 40.000 14.59 0.00 37.08 4.17
3041 3553 5.587443 ACAGTTACACTTCCAAGTAAACACC 59.413 40.000 14.59 0.00 37.08 4.16
3042 3554 6.673154 ACAGTTACACTTCCAAGTAAACAC 57.327 37.500 14.59 2.69 37.08 3.32
3197 3721 8.523915 TGATTAATGACAAGGCATGTAAGATT 57.476 30.769 0.00 0.00 44.12 2.40
3336 3860 5.822132 AAGGATCATTGGATGAGAGTAGG 57.178 43.478 0.00 0.00 43.53 3.18
3435 3959 1.807142 GTGCCTGAAGTTGTAAGGAGC 59.193 52.381 0.00 0.00 32.43 4.70
3508 4032 2.095461 TGTGAATCTCGGAGACCTGAG 58.905 52.381 10.41 0.00 45.18 3.35
3602 4128 4.763073 TCATGCTTCAGGTCTGATTAGTG 58.237 43.478 1.16 0.82 39.64 2.74
3603 4129 4.141756 CCTCATGCTTCAGGTCTGATTAGT 60.142 45.833 1.16 0.00 39.64 2.24
3604 4130 4.378774 CCTCATGCTTCAGGTCTGATTAG 58.621 47.826 1.16 0.00 39.64 1.73
3605 4131 3.135348 CCCTCATGCTTCAGGTCTGATTA 59.865 47.826 1.16 0.00 39.64 1.75
3606 4132 2.092538 CCCTCATGCTTCAGGTCTGATT 60.093 50.000 1.16 0.00 39.64 2.57
3607 4133 1.489649 CCCTCATGCTTCAGGTCTGAT 59.510 52.381 1.16 0.00 39.64 2.90
3608 4134 0.907486 CCCTCATGCTTCAGGTCTGA 59.093 55.000 0.00 0.00 37.91 3.27
3647 4176 0.106268 ACAACCTGCCAATGTCCACA 60.106 50.000 0.00 0.00 0.00 4.17
3648 4177 1.039856 AACAACCTGCCAATGTCCAC 58.960 50.000 0.00 0.00 0.00 4.02
3649 4178 1.039068 CAACAACCTGCCAATGTCCA 58.961 50.000 0.00 0.00 0.00 4.02
4032 4625 1.760192 GGGACAGCAGCAAGATCAAT 58.240 50.000 0.00 0.00 0.00 2.57
4083 4676 5.861787 AGCAAAAACACTACAAGTTCAACAC 59.138 36.000 0.00 0.00 0.00 3.32
4263 4856 2.493278 TCATCAAGTCAGATCGTCAGCA 59.507 45.455 0.00 0.00 0.00 4.41
4285 4981 2.402388 CGAAGCTTGCCTGCATCG 59.598 61.111 2.10 10.29 45.11 3.84
4314 5010 1.552337 ACTTCACATCACAGCGAGGAT 59.448 47.619 0.00 0.00 0.00 3.24
4340 5040 1.881973 TCTTCTTGCCAACATGCTCAC 59.118 47.619 0.00 0.00 0.00 3.51
4346 5046 2.434428 CTCAGCTCTTCTTGCCAACAT 58.566 47.619 0.00 0.00 0.00 2.71
4348 5048 1.163554 CCTCAGCTCTTCTTGCCAAC 58.836 55.000 0.00 0.00 0.00 3.77
4384 5084 3.181465 CCTCACACAAGGTACAGTCAACT 60.181 47.826 0.00 0.00 0.00 3.16
4395 5095 1.625315 TGGATCACTCCTCACACAAGG 59.375 52.381 0.00 0.00 42.59 3.61
4408 5133 4.307432 CGACCTAATACACCATGGATCAC 58.693 47.826 21.47 0.00 0.00 3.06
4422 5147 3.558931 TGCATCATGTTCCGACCTAAT 57.441 42.857 0.00 0.00 0.00 1.73
4424 5149 2.545742 CGATGCATCATGTTCCGACCTA 60.546 50.000 25.70 0.00 0.00 3.08
4425 5150 1.807755 CGATGCATCATGTTCCGACCT 60.808 52.381 25.70 0.00 0.00 3.85
4426 5151 0.583438 CGATGCATCATGTTCCGACC 59.417 55.000 25.70 0.00 0.00 4.79
4427 5152 1.570813 TCGATGCATCATGTTCCGAC 58.429 50.000 25.70 0.00 0.00 4.79
4428 5153 2.407090 GATCGATGCATCATGTTCCGA 58.593 47.619 25.70 16.05 0.00 4.55
4429 5154 1.125566 CGATCGATGCATCATGTTCCG 59.874 52.381 25.70 14.88 0.00 4.30
4448 5451 8.883731 ACCTTATTATCTTCACACTTTTCATCG 58.116 33.333 0.00 0.00 0.00 3.84
4453 5456 7.119262 CGGTCACCTTATTATCTTCACACTTTT 59.881 37.037 0.00 0.00 0.00 2.27
4457 5460 5.291128 CACGGTCACCTTATTATCTTCACAC 59.709 44.000 0.00 0.00 0.00 3.82
4498 5501 4.512198 TCTTACTACATCTAGTCGCTGAGC 59.488 45.833 0.00 0.00 34.79 4.26
4505 5508 6.137415 GCACGTCATCTTACTACATCTAGTC 58.863 44.000 0.00 0.00 34.79 2.59
4525 5533 0.108472 TTCATCTCCTCTGCTGCACG 60.108 55.000 0.00 0.00 0.00 5.34
4591 5605 2.308866 CCACCAAGGAACTCCCAGTTAT 59.691 50.000 0.00 0.00 38.80 1.89
4608 5622 6.956202 TCTACTAGTACAAAGCTATCCACC 57.044 41.667 0.00 0.00 0.00 4.61
4609 5623 8.077386 GTGATCTACTAGTACAAAGCTATCCAC 58.923 40.741 0.00 0.00 0.00 4.02
4613 5627 8.580720 CCATGTGATCTACTAGTACAAAGCTAT 58.419 37.037 0.00 0.00 0.00 2.97
4614 5628 7.778382 TCCATGTGATCTACTAGTACAAAGCTA 59.222 37.037 0.00 0.00 0.00 3.32
4626 5640 4.785346 AAAGCCATCCATGTGATCTACT 57.215 40.909 0.00 0.00 0.00 2.57
4658 5672 2.067932 CTCCCCTGGAGTGGCAAACA 62.068 60.000 0.00 0.00 44.25 2.83
4659 5673 1.303643 CTCCCCTGGAGTGGCAAAC 60.304 63.158 0.00 0.00 44.25 2.93
4660 5674 3.170362 CTCCCCTGGAGTGGCAAA 58.830 61.111 0.00 0.00 44.25 3.68
4669 5683 1.344763 CGTAAATCTAGGCTCCCCTGG 59.655 57.143 0.00 0.00 42.90 4.45
4670 5684 1.344763 CCGTAAATCTAGGCTCCCCTG 59.655 57.143 0.00 0.00 42.90 4.45
4671 5685 1.219724 TCCGTAAATCTAGGCTCCCCT 59.780 52.381 0.00 0.00 45.61 4.79
4672 5686 1.713297 TCCGTAAATCTAGGCTCCCC 58.287 55.000 0.00 0.00 0.00 4.81
4673 5687 2.897969 TCATCCGTAAATCTAGGCTCCC 59.102 50.000 0.00 0.00 0.00 4.30
4674 5688 3.827302 TCTCATCCGTAAATCTAGGCTCC 59.173 47.826 0.00 0.00 0.00 4.70
4675 5689 5.224135 GTTCTCATCCGTAAATCTAGGCTC 58.776 45.833 0.00 0.00 0.00 4.70
4676 5690 4.039366 GGTTCTCATCCGTAAATCTAGGCT 59.961 45.833 0.00 0.00 0.00 4.58
4677 5691 4.202223 TGGTTCTCATCCGTAAATCTAGGC 60.202 45.833 0.00 0.00 0.00 3.93
4678 5692 5.531122 TGGTTCTCATCCGTAAATCTAGG 57.469 43.478 0.00 0.00 0.00 3.02
4679 5693 5.463724 GCTTGGTTCTCATCCGTAAATCTAG 59.536 44.000 0.00 0.00 0.00 2.43
4680 5694 5.105106 TGCTTGGTTCTCATCCGTAAATCTA 60.105 40.000 0.00 0.00 0.00 1.98
4681 5695 4.192317 GCTTGGTTCTCATCCGTAAATCT 58.808 43.478 0.00 0.00 0.00 2.40
4684 5698 3.410631 TGCTTGGTTCTCATCCGTAAA 57.589 42.857 0.00 0.00 0.00 2.01
4685 5699 3.244422 ACTTGCTTGGTTCTCATCCGTAA 60.244 43.478 0.00 0.00 0.00 3.18
4686 5700 2.301870 ACTTGCTTGGTTCTCATCCGTA 59.698 45.455 0.00 0.00 0.00 4.02
4687 5701 1.072331 ACTTGCTTGGTTCTCATCCGT 59.928 47.619 0.00 0.00 0.00 4.69
4688 5702 1.813513 ACTTGCTTGGTTCTCATCCG 58.186 50.000 0.00 0.00 0.00 4.18
4693 5707 5.122396 CACCAACTATACTTGCTTGGTTCTC 59.878 44.000 0.32 0.00 43.15 2.87
4695 5709 4.760204 ACACCAACTATACTTGCTTGGTTC 59.240 41.667 0.32 0.00 43.15 3.62
4704 5718 5.397899 CCCATCATCCACACCAACTATACTT 60.398 44.000 0.00 0.00 0.00 2.24
4721 5743 2.846206 TGCTTGGTTCTACTCCCATCAT 59.154 45.455 0.00 0.00 0.00 2.45
4722 5744 2.265367 TGCTTGGTTCTACTCCCATCA 58.735 47.619 0.00 0.00 0.00 3.07
4723 5745 3.274288 CTTGCTTGGTTCTACTCCCATC 58.726 50.000 0.00 0.00 0.00 3.51
4725 5747 1.271379 GCTTGCTTGGTTCTACTCCCA 60.271 52.381 0.00 0.00 0.00 4.37
4726 5748 1.003696 AGCTTGCTTGGTTCTACTCCC 59.996 52.381 0.00 0.00 0.00 4.30
4728 5750 3.195825 TCCTAGCTTGCTTGGTTCTACTC 59.804 47.826 19.23 0.00 0.00 2.59
4729 5751 3.173965 TCCTAGCTTGCTTGGTTCTACT 58.826 45.455 19.23 0.00 0.00 2.57
4730 5752 3.611766 TCCTAGCTTGCTTGGTTCTAC 57.388 47.619 19.23 0.00 0.00 2.59
4731 5753 4.714802 TGTATCCTAGCTTGCTTGGTTCTA 59.285 41.667 19.23 9.56 0.00 2.10
4733 5755 3.873910 TGTATCCTAGCTTGCTTGGTTC 58.126 45.455 19.23 12.54 0.00 3.62
4735 5757 5.832539 ATATGTATCCTAGCTTGCTTGGT 57.167 39.130 19.23 11.31 0.00 3.67
4736 5758 6.820656 CCTAATATGTATCCTAGCTTGCTTGG 59.179 42.308 15.16 15.16 0.00 3.61
4737 5759 7.615403 TCCTAATATGTATCCTAGCTTGCTTG 58.385 38.462 0.00 0.00 0.00 4.01
4738 5760 7.798710 TCCTAATATGTATCCTAGCTTGCTT 57.201 36.000 0.00 0.00 0.00 3.91
4739 5761 7.986553 ATCCTAATATGTATCCTAGCTTGCT 57.013 36.000 0.00 0.00 0.00 3.91
4740 5762 8.919145 AGTATCCTAATATGTATCCTAGCTTGC 58.081 37.037 0.00 0.00 0.00 4.01
4742 5764 9.998752 ACAGTATCCTAATATGTATCCTAGCTT 57.001 33.333 0.00 0.00 0.00 3.74
4743 5765 9.635404 GACAGTATCCTAATATGTATCCTAGCT 57.365 37.037 0.00 0.00 0.00 3.32
4821 5845 8.275040 ACCTTCCTCTAGTGTTTGCATTTATAT 58.725 33.333 0.00 0.00 0.00 0.86
4840 5864 4.624913 TCCTTCATCATCTACACCTTCCT 58.375 43.478 0.00 0.00 0.00 3.36
4880 5905 1.372087 CCGGATTTCCTGCACTGCTC 61.372 60.000 0.00 0.00 0.00 4.26
4881 5906 1.377725 CCGGATTTCCTGCACTGCT 60.378 57.895 0.00 0.00 0.00 4.24
4882 5907 2.409870 CCCGGATTTCCTGCACTGC 61.410 63.158 0.73 0.00 0.00 4.40
4883 5908 0.745845 CTCCCGGATTTCCTGCACTG 60.746 60.000 0.73 0.00 0.00 3.66
4884 5909 1.201429 ACTCCCGGATTTCCTGCACT 61.201 55.000 0.73 0.00 0.00 4.40
4885 5910 0.539986 TACTCCCGGATTTCCTGCAC 59.460 55.000 0.73 0.00 0.00 4.57
4886 5911 1.281419 TTACTCCCGGATTTCCTGCA 58.719 50.000 0.73 0.00 0.00 4.41
4887 5912 2.413310 TTTACTCCCGGATTTCCTGC 57.587 50.000 0.73 0.00 0.00 4.85
4888 5913 4.332828 ACTTTTTACTCCCGGATTTCCTG 58.667 43.478 0.73 0.00 0.00 3.86
4889 5914 4.652679 ACTTTTTACTCCCGGATTTCCT 57.347 40.909 0.73 0.00 0.00 3.36
4890 5915 4.082408 CCAACTTTTTACTCCCGGATTTCC 60.082 45.833 0.73 0.00 0.00 3.13
4891 5916 4.521639 ACCAACTTTTTACTCCCGGATTTC 59.478 41.667 0.73 0.00 0.00 2.17
4892 5917 4.476297 ACCAACTTTTTACTCCCGGATTT 58.524 39.130 0.73 0.00 0.00 2.17
4893 5918 4.108501 ACCAACTTTTTACTCCCGGATT 57.891 40.909 0.73 0.00 0.00 3.01
4894 5919 3.801307 ACCAACTTTTTACTCCCGGAT 57.199 42.857 0.73 0.00 0.00 4.18
4895 5920 3.215975 CAACCAACTTTTTACTCCCGGA 58.784 45.455 0.73 0.00 0.00 5.14
4896 5921 2.287970 GCAACCAACTTTTTACTCCCGG 60.288 50.000 0.00 0.00 0.00 5.73
4897 5922 2.287970 GGCAACCAACTTTTTACTCCCG 60.288 50.000 0.00 0.00 0.00 5.14
4898 5923 2.696187 TGGCAACCAACTTTTTACTCCC 59.304 45.455 0.00 0.00 0.00 4.30
4899 5924 3.491964 GGTGGCAACCAACTTTTTACTCC 60.492 47.826 5.00 0.00 46.75 3.85
4900 5925 3.713288 GGTGGCAACCAACTTTTTACTC 58.287 45.455 5.00 0.00 46.75 2.59
4901 5926 3.812156 GGTGGCAACCAACTTTTTACT 57.188 42.857 5.00 0.00 46.75 2.24
4936 5982 2.989824 AAGCAGCAGCAGCCAAGG 60.990 61.111 6.10 0.00 45.49 3.61
4944 5990 3.999663 TCTAAAGAAGAAGAAGCAGCAGC 59.000 43.478 0.00 0.00 42.56 5.25
4947 5993 6.426633 AGAAACTCTAAAGAAGAAGAAGCAGC 59.573 38.462 0.00 0.00 32.46 5.25
4950 5996 8.616942 ACAAAGAAACTCTAAAGAAGAAGAAGC 58.383 33.333 0.00 0.00 32.46 3.86
4964 6010 8.576442 TCTTTTCTTCAACAACAAAGAAACTCT 58.424 29.630 9.19 0.00 45.98 3.24
4965 6011 8.742554 TCTTTTCTTCAACAACAAAGAAACTC 57.257 30.769 9.19 0.00 45.98 3.01
4966 6012 9.541143 TTTCTTTTCTTCAACAACAAAGAAACT 57.459 25.926 12.04 0.00 45.98 2.66
4969 6015 9.757227 TCTTTTCTTTTCTTCAACAACAAAGAA 57.243 25.926 0.00 0.00 40.18 2.52
4970 6016 9.191995 GTCTTTTCTTTTCTTCAACAACAAAGA 57.808 29.630 0.00 0.00 32.81 2.52
4971 6017 8.155923 CGTCTTTTCTTTTCTTCAACAACAAAG 58.844 33.333 0.00 0.00 0.00 2.77
4975 6021 5.515270 CCCGTCTTTTCTTTTCTTCAACAAC 59.485 40.000 0.00 0.00 0.00 3.32
4978 6024 4.042398 GCCCGTCTTTTCTTTTCTTCAAC 58.958 43.478 0.00 0.00 0.00 3.18
4987 6033 0.251209 GGGGAAGCCCGTCTTTTCTT 60.251 55.000 0.00 0.00 46.66 2.52
5008 6054 1.466950 TCGCTTAATGGAAACCGCAAG 59.533 47.619 0.00 0.00 0.00 4.01
5011 6057 2.622546 TTTCGCTTAATGGAAACCGC 57.377 45.000 0.00 0.00 0.00 5.68
5020 6066 7.454260 ACAAAGAAGAGGAATTTCGCTTAAT 57.546 32.000 2.31 0.00 0.00 1.40
5034 6080 7.919690 TGTGTATCACTCAAAACAAAGAAGAG 58.080 34.615 1.72 0.00 35.11 2.85
5036 6082 8.961092 CATTGTGTATCACTCAAAACAAAGAAG 58.039 33.333 1.72 0.00 35.57 2.85
5040 6086 5.982516 GCCATTGTGTATCACTCAAAACAAA 59.017 36.000 1.72 0.00 35.57 2.83
5099 6145 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
5100 6146 9.832445 TGCTTTTATATTAGTTTACAGAGGGAG 57.168 33.333 0.00 0.00 0.00 4.30
5186 6232 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
5187 6233 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
5190 6236 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
5191 6237 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5195 6241 9.950496 CTACTACTCCCTCCGTAAACTAATATA 57.050 37.037 0.00 0.00 0.00 0.86
5197 6243 7.147302 ACCTACTACTCCCTCCGTAAACTAATA 60.147 40.741 0.00 0.00 0.00 0.98
5198 6244 6.067350 CCTACTACTCCCTCCGTAAACTAAT 58.933 44.000 0.00 0.00 0.00 1.73
5199 6245 5.044846 ACCTACTACTCCCTCCGTAAACTAA 60.045 44.000 0.00 0.00 0.00 2.24
5202 6248 3.379688 CACCTACTACTCCCTCCGTAAAC 59.620 52.174 0.00 0.00 0.00 2.01
5204 6250 2.092212 CCACCTACTACTCCCTCCGTAA 60.092 54.545 0.00 0.00 0.00 3.18
5205 6251 1.492176 CCACCTACTACTCCCTCCGTA 59.508 57.143 0.00 0.00 0.00 4.02
5207 6253 0.258194 ACCACCTACTACTCCCTCCG 59.742 60.000 0.00 0.00 0.00 4.63
5208 6254 1.688627 CCACCACCTACTACTCCCTCC 60.689 61.905 0.00 0.00 0.00 4.30
5209 6255 1.688627 CCCACCACCTACTACTCCCTC 60.689 61.905 0.00 0.00 0.00 4.30
5210 6256 0.338814 CCCACCACCTACTACTCCCT 59.661 60.000 0.00 0.00 0.00 4.20
5211 6257 0.337428 TCCCACCACCTACTACTCCC 59.663 60.000 0.00 0.00 0.00 4.30
5212 6258 1.006878 ACTCCCACCACCTACTACTCC 59.993 57.143 0.00 0.00 0.00 3.85
5213 6259 2.528673 ACTCCCACCACCTACTACTC 57.471 55.000 0.00 0.00 0.00 2.59
5303 6453 1.924524 CACACGAATACACGATGGTCC 59.075 52.381 0.00 0.00 37.03 4.46
5304 6454 2.344441 CACACACGAATACACGATGGTC 59.656 50.000 0.00 0.00 37.03 4.02
5305 6455 2.288579 ACACACACGAATACACGATGGT 60.289 45.455 0.00 0.00 37.03 3.55
5306 6456 2.333926 ACACACACGAATACACGATGG 58.666 47.619 0.00 0.00 37.03 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.