Multiple sequence alignment - TraesCS3D01G004600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G004600 | chr3D | 100.000 | 2993 | 0 | 0 | 1 | 2993 | 1844326 | 1847318 | 0.000000e+00 | 5528.0 |
1 | TraesCS3D01G004600 | chr3D | 77.037 | 135 | 23 | 6 | 2817 | 2947 | 560945676 | 560945806 | 1.490000e-08 | 71.3 |
2 | TraesCS3D01G004600 | chr3A | 94.045 | 1377 | 51 | 15 | 866 | 2218 | 7201852 | 7200483 | 0.000000e+00 | 2060.0 |
3 | TraesCS3D01G004600 | chr3A | 87.148 | 887 | 80 | 18 | 4 | 867 | 7202889 | 7202014 | 0.000000e+00 | 976.0 |
4 | TraesCS3D01G004600 | chr3A | 92.934 | 467 | 19 | 11 | 2537 | 2993 | 7200490 | 7200028 | 0.000000e+00 | 667.0 |
5 | TraesCS3D01G004600 | chr3A | 92.027 | 301 | 12 | 1 | 2227 | 2515 | 325451196 | 325451496 | 2.150000e-111 | 412.0 |
6 | TraesCS3D01G004600 | chr3A | 92.000 | 300 | 12 | 1 | 2228 | 2515 | 167764265 | 167763966 | 7.720000e-111 | 411.0 |
7 | TraesCS3D01G004600 | chr3A | 91.262 | 309 | 15 | 1 | 2224 | 2520 | 316668044 | 316668352 | 7.720000e-111 | 411.0 |
8 | TraesCS3D01G004600 | chr3A | 91.749 | 303 | 12 | 2 | 2230 | 2519 | 25110155 | 25109853 | 2.780000e-110 | 409.0 |
9 | TraesCS3D01G004600 | chr3A | 91.749 | 303 | 12 | 2 | 2226 | 2515 | 444288563 | 444288261 | 2.780000e-110 | 409.0 |
10 | TraesCS3D01G004600 | chr3B | 92.632 | 1330 | 49 | 16 | 828 | 2127 | 4202045 | 4203355 | 0.000000e+00 | 1868.0 |
11 | TraesCS3D01G004600 | chr3B | 94.158 | 1027 | 33 | 9 | 829 | 1846 | 5058240 | 5059248 | 0.000000e+00 | 1539.0 |
12 | TraesCS3D01G004600 | chr3B | 91.962 | 846 | 52 | 8 | 1 | 833 | 5056322 | 5057164 | 0.000000e+00 | 1171.0 |
13 | TraesCS3D01G004600 | chr3B | 91.145 | 847 | 59 | 7 | 1 | 833 | 4200163 | 4201007 | 0.000000e+00 | 1134.0 |
14 | TraesCS3D01G004600 | chr3B | 74.038 | 208 | 34 | 12 | 2547 | 2752 | 40170761 | 40170950 | 1.930000e-07 | 67.6 |
15 | TraesCS3D01G004600 | chr5B | 91.883 | 308 | 12 | 2 | 2226 | 2520 | 26842390 | 26842083 | 4.610000e-113 | 418.0 |
16 | TraesCS3D01G004600 | chr5B | 80.319 | 188 | 33 | 4 | 2593 | 2777 | 288439959 | 288439773 | 4.020000e-29 | 139.0 |
17 | TraesCS3D01G004600 | chr5B | 83.333 | 102 | 14 | 2 | 2517 | 2616 | 696578329 | 696578229 | 1.140000e-14 | 91.6 |
18 | TraesCS3D01G004600 | chr1A | 92.000 | 300 | 12 | 1 | 2228 | 2515 | 315372740 | 315373039 | 7.720000e-111 | 411.0 |
19 | TraesCS3D01G004600 | chr1A | 91.333 | 300 | 14 | 1 | 2228 | 2515 | 231449848 | 231450147 | 1.670000e-107 | 399.0 |
20 | TraesCS3D01G004600 | chr7B | 91.749 | 303 | 12 | 2 | 2227 | 2516 | 643379904 | 643379602 | 2.780000e-110 | 409.0 |
21 | TraesCS3D01G004600 | chr7B | 84.974 | 193 | 23 | 6 | 2517 | 2708 | 91240425 | 91240238 | 1.100000e-44 | 191.0 |
22 | TraesCS3D01G004600 | chr2A | 91.694 | 301 | 13 | 1 | 2228 | 2516 | 673223895 | 673223595 | 9.990000e-110 | 407.0 |
23 | TraesCS3D01G004600 | chr4A | 91.667 | 300 | 13 | 1 | 2228 | 2515 | 43385222 | 43384923 | 3.590000e-109 | 405.0 |
24 | TraesCS3D01G004600 | chr7A | 91.919 | 297 | 11 | 2 | 2228 | 2512 | 568942043 | 568942338 | 1.290000e-108 | 403.0 |
25 | TraesCS3D01G004600 | chr7A | 83.077 | 130 | 21 | 1 | 2510 | 2638 | 562892725 | 562892854 | 1.890000e-22 | 117.0 |
26 | TraesCS3D01G004600 | chr5A | 91.176 | 306 | 13 | 3 | 2230 | 2521 | 13350179 | 13350484 | 1.290000e-108 | 403.0 |
27 | TraesCS3D01G004600 | chr5A | 90.879 | 307 | 14 | 3 | 2223 | 2516 | 574021151 | 574021456 | 1.670000e-107 | 399.0 |
28 | TraesCS3D01G004600 | chr5A | 78.261 | 299 | 54 | 10 | 2230 | 2519 | 672507999 | 672508295 | 6.590000e-42 | 182.0 |
29 | TraesCS3D01G004600 | chr4B | 91.216 | 296 | 14 | 1 | 2229 | 2512 | 626075421 | 626075716 | 2.800000e-105 | 392.0 |
30 | TraesCS3D01G004600 | chr4B | 80.795 | 151 | 26 | 3 | 2570 | 2720 | 588691893 | 588692040 | 6.780000e-22 | 115.0 |
31 | TraesCS3D01G004600 | chr6A | 87.255 | 306 | 27 | 1 | 2227 | 2520 | 610200901 | 610201206 | 3.700000e-89 | 339.0 |
32 | TraesCS3D01G004600 | chr6A | 87.097 | 93 | 11 | 1 | 2549 | 2640 | 462253446 | 462253354 | 1.470000e-18 | 104.0 |
33 | TraesCS3D01G004600 | chr1B | 83.162 | 291 | 40 | 5 | 2230 | 2513 | 480425185 | 480425473 | 1.060000e-64 | 257.0 |
34 | TraesCS3D01G004600 | chr6D | 82.927 | 123 | 17 | 3 | 2523 | 2645 | 451802534 | 451802652 | 1.130000e-19 | 108.0 |
35 | TraesCS3D01G004600 | chr6D | 84.956 | 113 | 7 | 5 | 2560 | 2671 | 417695785 | 417695888 | 4.080000e-19 | 106.0 |
36 | TraesCS3D01G004600 | chr2B | 85.294 | 102 | 13 | 2 | 2545 | 2645 | 153902850 | 153902750 | 1.470000e-18 | 104.0 |
37 | TraesCS3D01G004600 | chr2B | 77.311 | 119 | 23 | 4 | 2636 | 2752 | 330064346 | 330064230 | 1.930000e-07 | 67.6 |
38 | TraesCS3D01G004600 | chr4D | 79.167 | 120 | 19 | 6 | 2636 | 2752 | 12511675 | 12511559 | 8.900000e-11 | 78.7 |
39 | TraesCS3D01G004600 | chr4D | 74.641 | 209 | 31 | 14 | 2547 | 2752 | 298879856 | 298880045 | 4.140000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G004600 | chr3D | 1844326 | 1847318 | 2992 | False | 5528.000000 | 5528 | 100.000000 | 1 | 2993 | 1 | chr3D.!!$F1 | 2992 |
1 | TraesCS3D01G004600 | chr3A | 7200028 | 7202889 | 2861 | True | 1234.333333 | 2060 | 91.375667 | 4 | 2993 | 3 | chr3A.!!$R4 | 2989 |
2 | TraesCS3D01G004600 | chr3B | 4200163 | 4203355 | 3192 | False | 1501.000000 | 1868 | 91.888500 | 1 | 2127 | 2 | chr3B.!!$F2 | 2126 |
3 | TraesCS3D01G004600 | chr3B | 5056322 | 5059248 | 2926 | False | 1355.000000 | 1539 | 93.060000 | 1 | 1846 | 2 | chr3B.!!$F3 | 1845 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
20 | 21 | 0.035820 | TGGCCTTTTGCTACTACGGG | 60.036 | 55.0 | 3.32 | 0.0 | 40.92 | 5.28 | F |
1798 | 3085 | 0.247736 | CAAGTCCGTGCCTAGCTCTT | 59.752 | 55.0 | 0.00 | 0.0 | 0.00 | 2.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1893 | 3201 | 0.250234 | TCTTGTCCCCGATCAGCTTG | 59.750 | 55.0 | 0.0 | 0.0 | 0.0 | 4.01 | R |
2775 | 4094 | 0.179040 | TTCTTCCACAACCACCGTCC | 60.179 | 55.0 | 0.0 | 0.0 | 0.0 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 0.035820 | TGGCCTTTTGCTACTACGGG | 60.036 | 55.000 | 3.32 | 0.00 | 40.92 | 5.28 |
64 | 65 | 0.802222 | GCAGCGAGTCAAGCGATGTA | 60.802 | 55.000 | 0.00 | 0.00 | 45.81 | 2.29 |
141 | 142 | 4.503123 | CGGTAATTGCTACATCCATCTCCA | 60.503 | 45.833 | 0.00 | 0.00 | 31.45 | 3.86 |
259 | 261 | 6.373779 | AGATCGTTTTGCTACATTGAAACTG | 58.626 | 36.000 | 0.00 | 0.00 | 31.58 | 3.16 |
275 | 277 | 6.522625 | TGAAACTGTTTTGGAGATTGTTGA | 57.477 | 33.333 | 7.28 | 0.00 | 0.00 | 3.18 |
420 | 430 | 2.835701 | GATGGCGGCGACTGTGAGAA | 62.836 | 60.000 | 16.45 | 0.00 | 0.00 | 2.87 |
488 | 498 | 1.067084 | AGGCGTCAGAGATGCATCG | 59.933 | 57.895 | 20.67 | 9.81 | 45.37 | 3.84 |
503 | 513 | 3.426117 | ATCGATGGTGACCGCGGTC | 62.426 | 63.158 | 43.88 | 43.88 | 44.77 | 4.79 |
519 | 529 | 1.396653 | GGTCTGGGATTCATTGGCAG | 58.603 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
609 | 629 | 1.421646 | CACCTCTTGAGGGTTGGAAGT | 59.578 | 52.381 | 19.51 | 0.00 | 34.44 | 3.01 |
610 | 630 | 2.637872 | CACCTCTTGAGGGTTGGAAGTA | 59.362 | 50.000 | 19.51 | 0.00 | 34.44 | 2.24 |
660 | 680 | 2.430367 | GGCGTGTGGGTCTTTCCT | 59.570 | 61.111 | 0.00 | 0.00 | 36.25 | 3.36 |
700 | 720 | 3.157881 | AGTGAGGAAGAAGACGACATGA | 58.842 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
784 | 808 | 2.635443 | CGAAATTTGGGCTGGCGGT | 61.635 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
798 | 822 | 4.524318 | CGGTCCGGCGCCTAACAT | 62.524 | 66.667 | 26.68 | 0.00 | 0.00 | 2.71 |
930 | 2199 | 3.397482 | CAGGCCATACACTTGAGATAGC | 58.603 | 50.000 | 5.01 | 0.00 | 0.00 | 2.97 |
1785 | 3066 | 0.460459 | GCTCGGCCTACTTCAAGTCC | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1790 | 3071 | 1.019805 | GCCTACTTCAAGTCCGTGCC | 61.020 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1791 | 3072 | 0.608640 | CCTACTTCAAGTCCGTGCCT | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1798 | 3085 | 0.247736 | CAAGTCCGTGCCTAGCTCTT | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1893 | 3201 | 1.293179 | GTGATTTTGCAGGGTGGCC | 59.707 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2050 | 3364 | 2.025605 | TCATGCATGGCTTCCTTTCTCT | 60.026 | 45.455 | 25.97 | 0.00 | 0.00 | 3.10 |
2101 | 3415 | 4.201891 | GCAACCAGTCTTAGATCATGCAAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
2103 | 3417 | 3.776969 | ACCAGTCTTAGATCATGCAAGGA | 59.223 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2105 | 3419 | 4.383444 | CCAGTCTTAGATCATGCAAGGACA | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
2121 | 3435 | 2.158623 | AGGACATGCAAGAACAGTGGAA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2123 | 3437 | 3.366679 | GGACATGCAAGAACAGTGGAATG | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
2124 | 3438 | 3.225104 | ACATGCAAGAACAGTGGAATGT | 58.775 | 40.909 | 0.00 | 0.00 | 33.96 | 2.71 |
2126 | 3440 | 3.713858 | TGCAAGAACAGTGGAATGTTG | 57.286 | 42.857 | 0.00 | 0.00 | 43.32 | 3.33 |
2127 | 3441 | 2.223782 | TGCAAGAACAGTGGAATGTTGC | 60.224 | 45.455 | 15.92 | 15.92 | 43.32 | 4.17 |
2128 | 3442 | 2.223782 | GCAAGAACAGTGGAATGTTGCA | 60.224 | 45.455 | 17.13 | 0.00 | 43.32 | 4.08 |
2129 | 3443 | 7.960400 | ATGCAAGAACAGTGGAATGTTGCAC | 62.960 | 44.000 | 23.09 | 9.06 | 43.43 | 4.57 |
2137 | 3453 | 2.596346 | TGGAATGTTGCACATGGAGTT | 58.404 | 42.857 | 0.00 | 0.00 | 37.97 | 3.01 |
2148 | 3464 | 4.081752 | TGCACATGGAGTTGAGTTTTGTTT | 60.082 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
2151 | 3467 | 6.672836 | GCACATGGAGTTGAGTTTTGTTTTTG | 60.673 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
2152 | 3468 | 6.589523 | CACATGGAGTTGAGTTTTGTTTTTGA | 59.410 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
2153 | 3469 | 7.278424 | CACATGGAGTTGAGTTTTGTTTTTGAT | 59.722 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2156 | 3472 | 8.925161 | TGGAGTTGAGTTTTGTTTTTGATAAG | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
2188 | 3506 | 1.691434 | CTCCTGGCTTCTAGATCCACC | 59.309 | 57.143 | 9.48 | 2.83 | 0.00 | 4.61 |
2195 | 3513 | 2.615912 | GCTTCTAGATCCACCAATGCAC | 59.384 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2205 | 3523 | 2.421775 | CCACCAATGCACGCAACTATAA | 59.578 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
2217 | 3535 | 8.708742 | TGCACGCAACTATAATATTATTCTCAC | 58.291 | 33.333 | 13.09 | 1.42 | 0.00 | 3.51 |
2218 | 3536 | 8.708742 | GCACGCAACTATAATATTATTCTCACA | 58.291 | 33.333 | 13.09 | 0.00 | 0.00 | 3.58 |
2220 | 3538 | 9.758651 | ACGCAACTATAATATTATTCTCACACA | 57.241 | 29.630 | 13.09 | 0.00 | 0.00 | 3.72 |
2231 | 3549 | 9.950496 | ATATTATTCTCACACAATAGCCTAAGG | 57.050 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2244 | 3562 | 2.130272 | CCTAAGGCCTCCTTTGGTTC | 57.870 | 55.000 | 5.23 | 0.00 | 46.36 | 3.62 |
2245 | 3563 | 1.354368 | CCTAAGGCCTCCTTTGGTTCA | 59.646 | 52.381 | 5.23 | 0.00 | 46.36 | 3.18 |
2246 | 3564 | 2.024941 | CCTAAGGCCTCCTTTGGTTCAT | 60.025 | 50.000 | 5.23 | 0.00 | 46.36 | 2.57 |
2247 | 3565 | 3.202151 | CCTAAGGCCTCCTTTGGTTCATA | 59.798 | 47.826 | 5.23 | 0.00 | 46.36 | 2.15 |
2248 | 3566 | 3.372440 | AAGGCCTCCTTTGGTTCATAG | 57.628 | 47.619 | 5.23 | 0.00 | 41.69 | 2.23 |
2249 | 3567 | 1.566231 | AGGCCTCCTTTGGTTCATAGG | 59.434 | 52.381 | 0.00 | 0.00 | 34.61 | 2.57 |
2250 | 3568 | 1.564348 | GGCCTCCTTTGGTTCATAGGA | 59.436 | 52.381 | 0.00 | 6.86 | 38.81 | 2.94 |
2251 | 3569 | 2.175715 | GGCCTCCTTTGGTTCATAGGAT | 59.824 | 50.000 | 0.00 | 0.00 | 39.94 | 3.24 |
2252 | 3570 | 3.394606 | GGCCTCCTTTGGTTCATAGGATA | 59.605 | 47.826 | 0.00 | 0.00 | 39.94 | 2.59 |
2253 | 3571 | 4.505742 | GGCCTCCTTTGGTTCATAGGATAG | 60.506 | 50.000 | 0.00 | 4.66 | 39.94 | 2.08 |
2254 | 3572 | 4.348168 | GCCTCCTTTGGTTCATAGGATAGA | 59.652 | 45.833 | 7.38 | 0.00 | 39.94 | 1.98 |
2255 | 3573 | 5.163195 | GCCTCCTTTGGTTCATAGGATAGAA | 60.163 | 44.000 | 7.38 | 0.00 | 39.94 | 2.10 |
2256 | 3574 | 6.634955 | GCCTCCTTTGGTTCATAGGATAGAAA | 60.635 | 42.308 | 7.38 | 0.00 | 39.94 | 2.52 |
2257 | 3575 | 7.521669 | CCTCCTTTGGTTCATAGGATAGAAAT | 58.478 | 38.462 | 7.38 | 0.00 | 39.94 | 2.17 |
2258 | 3576 | 8.001292 | CCTCCTTTGGTTCATAGGATAGAAATT | 58.999 | 37.037 | 7.38 | 0.00 | 39.94 | 1.82 |
2259 | 3577 | 9.413734 | CTCCTTTGGTTCATAGGATAGAAATTT | 57.586 | 33.333 | 7.38 | 0.00 | 39.94 | 1.82 |
2260 | 3578 | 9.768215 | TCCTTTGGTTCATAGGATAGAAATTTT | 57.232 | 29.630 | 3.54 | 0.00 | 36.84 | 1.82 |
2294 | 3612 | 8.286191 | AGGAAAATCATAGGAAGTGAAATGAC | 57.714 | 34.615 | 0.00 | 0.00 | 31.56 | 3.06 |
2295 | 3613 | 7.890127 | AGGAAAATCATAGGAAGTGAAATGACA | 59.110 | 33.333 | 0.00 | 0.00 | 31.56 | 3.58 |
2296 | 3614 | 8.689972 | GGAAAATCATAGGAAGTGAAATGACAT | 58.310 | 33.333 | 0.00 | 0.00 | 31.56 | 3.06 |
2297 | 3615 | 9.512435 | GAAAATCATAGGAAGTGAAATGACATG | 57.488 | 33.333 | 0.00 | 0.00 | 31.56 | 3.21 |
2298 | 3616 | 6.630444 | ATCATAGGAAGTGAAATGACATGC | 57.370 | 37.500 | 0.00 | 0.00 | 31.56 | 4.06 |
2299 | 3617 | 5.499313 | TCATAGGAAGTGAAATGACATGCA | 58.501 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
2300 | 3618 | 6.124340 | TCATAGGAAGTGAAATGACATGCAT | 58.876 | 36.000 | 0.00 | 0.00 | 39.43 | 3.96 |
2301 | 3619 | 4.978083 | AGGAAGTGAAATGACATGCATC | 57.022 | 40.909 | 0.00 | 0.00 | 35.78 | 3.91 |
2302 | 3620 | 4.597004 | AGGAAGTGAAATGACATGCATCT | 58.403 | 39.130 | 0.00 | 0.00 | 35.78 | 2.90 |
2303 | 3621 | 4.639310 | AGGAAGTGAAATGACATGCATCTC | 59.361 | 41.667 | 0.00 | 0.00 | 35.78 | 2.75 |
2304 | 3622 | 4.397103 | GGAAGTGAAATGACATGCATCTCA | 59.603 | 41.667 | 7.13 | 7.13 | 35.78 | 3.27 |
2305 | 3623 | 5.106038 | GGAAGTGAAATGACATGCATCTCAA | 60.106 | 40.000 | 8.81 | 0.00 | 35.82 | 3.02 |
2306 | 3624 | 6.405508 | GGAAGTGAAATGACATGCATCTCAAT | 60.406 | 38.462 | 8.81 | 0.00 | 35.82 | 2.57 |
2307 | 3625 | 6.525578 | AGTGAAATGACATGCATCTCAATT | 57.474 | 33.333 | 8.81 | 6.85 | 35.82 | 2.32 |
2308 | 3626 | 6.561614 | AGTGAAATGACATGCATCTCAATTC | 58.438 | 36.000 | 19.97 | 19.97 | 35.82 | 2.17 |
2309 | 3627 | 5.747197 | GTGAAATGACATGCATCTCAATTCC | 59.253 | 40.000 | 22.40 | 13.88 | 35.82 | 3.01 |
2310 | 3628 | 4.563337 | AATGACATGCATCTCAATTCCG | 57.437 | 40.909 | 8.81 | 0.00 | 35.78 | 4.30 |
2311 | 3629 | 3.264998 | TGACATGCATCTCAATTCCGA | 57.735 | 42.857 | 1.73 | 0.00 | 0.00 | 4.55 |
2312 | 3630 | 3.812262 | TGACATGCATCTCAATTCCGAT | 58.188 | 40.909 | 1.73 | 0.00 | 0.00 | 4.18 |
2313 | 3631 | 3.562557 | TGACATGCATCTCAATTCCGATG | 59.437 | 43.478 | 1.73 | 8.47 | 39.91 | 3.84 |
2314 | 3632 | 3.548770 | ACATGCATCTCAATTCCGATGT | 58.451 | 40.909 | 0.00 | 0.00 | 39.30 | 3.06 |
2315 | 3633 | 3.562973 | ACATGCATCTCAATTCCGATGTC | 59.437 | 43.478 | 0.00 | 7.60 | 39.30 | 3.06 |
2316 | 3634 | 3.264998 | TGCATCTCAATTCCGATGTCA | 57.735 | 42.857 | 12.58 | 9.34 | 39.30 | 3.58 |
2317 | 3635 | 3.812262 | TGCATCTCAATTCCGATGTCAT | 58.188 | 40.909 | 12.58 | 0.00 | 39.30 | 3.06 |
2318 | 3636 | 4.201657 | TGCATCTCAATTCCGATGTCATT | 58.798 | 39.130 | 12.58 | 0.00 | 39.30 | 2.57 |
2319 | 3637 | 4.641541 | TGCATCTCAATTCCGATGTCATTT | 59.358 | 37.500 | 12.58 | 0.00 | 39.30 | 2.32 |
2320 | 3638 | 4.974275 | GCATCTCAATTCCGATGTCATTTG | 59.026 | 41.667 | 12.58 | 0.00 | 39.30 | 2.32 |
2321 | 3639 | 5.220912 | GCATCTCAATTCCGATGTCATTTGA | 60.221 | 40.000 | 12.58 | 0.00 | 39.30 | 2.69 |
2322 | 3640 | 6.514541 | GCATCTCAATTCCGATGTCATTTGAT | 60.515 | 38.462 | 12.58 | 0.00 | 39.30 | 2.57 |
2323 | 3641 | 6.367686 | TCTCAATTCCGATGTCATTTGATG | 57.632 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
2324 | 3642 | 4.923893 | TCAATTCCGATGTCATTTGATGC | 58.076 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2325 | 3643 | 4.398673 | TCAATTCCGATGTCATTTGATGCA | 59.601 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
2326 | 3644 | 5.068067 | TCAATTCCGATGTCATTTGATGCAT | 59.932 | 36.000 | 0.00 | 0.00 | 32.43 | 3.96 |
2327 | 3645 | 6.262720 | TCAATTCCGATGTCATTTGATGCATA | 59.737 | 34.615 | 0.00 | 0.00 | 30.80 | 3.14 |
2328 | 3646 | 5.678132 | TTCCGATGTCATTTGATGCATAG | 57.322 | 39.130 | 0.00 | 0.00 | 30.80 | 2.23 |
2329 | 3647 | 4.067192 | TCCGATGTCATTTGATGCATAGG | 58.933 | 43.478 | 0.00 | 13.10 | 38.99 | 2.57 |
2330 | 3648 | 4.067192 | CCGATGTCATTTGATGCATAGGA | 58.933 | 43.478 | 0.00 | 0.00 | 39.45 | 2.94 |
2331 | 3649 | 4.698780 | CCGATGTCATTTGATGCATAGGAT | 59.301 | 41.667 | 0.00 | 0.00 | 39.45 | 3.24 |
2332 | 3650 | 5.876460 | CCGATGTCATTTGATGCATAGGATA | 59.124 | 40.000 | 0.00 | 0.00 | 39.45 | 2.59 |
2333 | 3651 | 6.036844 | CCGATGTCATTTGATGCATAGGATAG | 59.963 | 42.308 | 0.00 | 0.00 | 39.45 | 2.08 |
2334 | 3652 | 6.815142 | CGATGTCATTTGATGCATAGGATAGA | 59.185 | 38.462 | 0.00 | 0.00 | 30.80 | 1.98 |
2335 | 3653 | 7.332678 | CGATGTCATTTGATGCATAGGATAGAA | 59.667 | 37.037 | 0.00 | 0.00 | 30.80 | 2.10 |
2336 | 3654 | 9.175312 | GATGTCATTTGATGCATAGGATAGAAT | 57.825 | 33.333 | 0.00 | 0.00 | 30.80 | 2.40 |
2337 | 3655 | 8.929260 | TGTCATTTGATGCATAGGATAGAATT | 57.071 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2338 | 3656 | 9.358406 | TGTCATTTGATGCATAGGATAGAATTT | 57.642 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2363 | 3681 | 8.635765 | TTTTTCATTGAGTCTAGGCTAATGTT | 57.364 | 30.769 | 18.08 | 0.00 | 32.22 | 2.71 |
2364 | 3682 | 8.635765 | TTTTCATTGAGTCTAGGCTAATGTTT | 57.364 | 30.769 | 18.08 | 0.00 | 32.22 | 2.83 |
2365 | 3683 | 8.635765 | TTTCATTGAGTCTAGGCTAATGTTTT | 57.364 | 30.769 | 18.08 | 0.00 | 32.22 | 2.43 |
2366 | 3684 | 8.635765 | TTCATTGAGTCTAGGCTAATGTTTTT | 57.364 | 30.769 | 18.08 | 0.00 | 32.22 | 1.94 |
2385 | 3703 | 4.379339 | TTTTTCCTCCAAAACGTGAAGG | 57.621 | 40.909 | 0.00 | 0.00 | 33.47 | 3.46 |
2386 | 3704 | 3.284793 | TTTCCTCCAAAACGTGAAGGA | 57.715 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
2387 | 3705 | 3.502123 | TTCCTCCAAAACGTGAAGGAT | 57.498 | 42.857 | 3.90 | 0.00 | 0.00 | 3.24 |
2388 | 3706 | 3.502123 | TCCTCCAAAACGTGAAGGATT | 57.498 | 42.857 | 3.90 | 0.00 | 0.00 | 3.01 |
2389 | 3707 | 3.146066 | TCCTCCAAAACGTGAAGGATTG | 58.854 | 45.455 | 3.90 | 0.40 | 0.00 | 2.67 |
2390 | 3708 | 3.146066 | CCTCCAAAACGTGAAGGATTGA | 58.854 | 45.455 | 3.90 | 0.00 | 0.00 | 2.57 |
2391 | 3709 | 3.758554 | CCTCCAAAACGTGAAGGATTGAT | 59.241 | 43.478 | 3.90 | 0.00 | 0.00 | 2.57 |
2392 | 3710 | 4.218417 | CCTCCAAAACGTGAAGGATTGATT | 59.782 | 41.667 | 3.90 | 0.00 | 0.00 | 2.57 |
2393 | 3711 | 5.371115 | TCCAAAACGTGAAGGATTGATTC | 57.629 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2394 | 3712 | 4.217550 | TCCAAAACGTGAAGGATTGATTCC | 59.782 | 41.667 | 0.00 | 0.00 | 45.85 | 3.01 |
2437 | 3755 | 7.290110 | GAATCCATTCCTATAAACCAAAGGG | 57.710 | 40.000 | 0.00 | 0.00 | 41.29 | 3.95 |
2438 | 3756 | 4.542697 | TCCATTCCTATAAACCAAAGGGC | 58.457 | 43.478 | 0.00 | 0.00 | 37.90 | 5.19 |
2439 | 3757 | 4.231890 | TCCATTCCTATAAACCAAAGGGCT | 59.768 | 41.667 | 0.00 | 0.00 | 37.90 | 5.19 |
2440 | 3758 | 4.962362 | CCATTCCTATAAACCAAAGGGCTT | 59.038 | 41.667 | 0.00 | 0.00 | 37.90 | 4.35 |
2441 | 3759 | 5.069119 | CCATTCCTATAAACCAAAGGGCTTC | 59.931 | 44.000 | 0.00 | 0.00 | 37.90 | 3.86 |
2442 | 3760 | 4.938575 | TCCTATAAACCAAAGGGCTTCA | 57.061 | 40.909 | 0.00 | 0.00 | 37.90 | 3.02 |
2443 | 3761 | 5.263872 | TCCTATAAACCAAAGGGCTTCAA | 57.736 | 39.130 | 0.00 | 0.00 | 37.90 | 2.69 |
2444 | 3762 | 5.646215 | TCCTATAAACCAAAGGGCTTCAAA | 58.354 | 37.500 | 0.00 | 0.00 | 37.90 | 2.69 |
2445 | 3763 | 5.714806 | TCCTATAAACCAAAGGGCTTCAAAG | 59.285 | 40.000 | 0.00 | 0.00 | 37.90 | 2.77 |
2446 | 3764 | 4.890158 | ATAAACCAAAGGGCTTCAAAGG | 57.110 | 40.909 | 0.00 | 0.00 | 37.90 | 3.11 |
2447 | 3765 | 2.470057 | AACCAAAGGGCTTCAAAGGA | 57.530 | 45.000 | 0.00 | 0.00 | 37.90 | 3.36 |
2448 | 3766 | 2.470057 | ACCAAAGGGCTTCAAAGGAA | 57.530 | 45.000 | 0.00 | 0.00 | 37.90 | 3.36 |
2449 | 3767 | 2.976440 | ACCAAAGGGCTTCAAAGGAAT | 58.024 | 42.857 | 0.00 | 0.00 | 37.90 | 3.01 |
2450 | 3768 | 3.317406 | ACCAAAGGGCTTCAAAGGAATT | 58.683 | 40.909 | 0.00 | 0.00 | 37.90 | 2.17 |
2451 | 3769 | 3.716353 | ACCAAAGGGCTTCAAAGGAATTT | 59.284 | 39.130 | 0.00 | 0.00 | 37.90 | 1.82 |
2452 | 3770 | 4.165950 | ACCAAAGGGCTTCAAAGGAATTTT | 59.834 | 37.500 | 0.00 | 0.00 | 37.90 | 1.82 |
2453 | 3771 | 5.132502 | CCAAAGGGCTTCAAAGGAATTTTT | 58.867 | 37.500 | 0.00 | 0.00 | 31.34 | 1.94 |
2454 | 3772 | 5.239306 | CCAAAGGGCTTCAAAGGAATTTTTC | 59.761 | 40.000 | 0.00 | 0.00 | 31.34 | 2.29 |
2455 | 3773 | 9.962289 | ACCAAAGGGCTTCAAAGGAATTTTTCC | 62.962 | 40.741 | 0.00 | 0.00 | 44.02 | 3.13 |
2470 | 3788 | 8.201554 | GGAATTTTTCCTTTGCAAATCCTATC | 57.798 | 34.615 | 13.23 | 4.40 | 46.57 | 2.08 |
2471 | 3789 | 7.280876 | GGAATTTTTCCTTTGCAAATCCTATCC | 59.719 | 37.037 | 13.23 | 9.41 | 46.57 | 2.59 |
2472 | 3790 | 6.933514 | TTTTTCCTTTGCAAATCCTATCCT | 57.066 | 33.333 | 13.23 | 0.00 | 0.00 | 3.24 |
2473 | 3791 | 8.608185 | ATTTTTCCTTTGCAAATCCTATCCTA | 57.392 | 30.769 | 13.23 | 0.00 | 0.00 | 2.94 |
2474 | 3792 | 8.608185 | TTTTTCCTTTGCAAATCCTATCCTAT | 57.392 | 30.769 | 13.23 | 0.00 | 0.00 | 2.57 |
2475 | 3793 | 9.707957 | TTTTTCCTTTGCAAATCCTATCCTATA | 57.292 | 29.630 | 13.23 | 0.00 | 0.00 | 1.31 |
2476 | 3794 | 8.924511 | TTTCCTTTGCAAATCCTATCCTATAG | 57.075 | 34.615 | 13.23 | 0.00 | 0.00 | 1.31 |
2477 | 3795 | 7.872061 | TCCTTTGCAAATCCTATCCTATAGA | 57.128 | 36.000 | 13.23 | 0.00 | 0.00 | 1.98 |
2478 | 3796 | 8.275187 | TCCTTTGCAAATCCTATCCTATAGAA | 57.725 | 34.615 | 13.23 | 0.00 | 0.00 | 2.10 |
2479 | 3797 | 8.894592 | TCCTTTGCAAATCCTATCCTATAGAAT | 58.105 | 33.333 | 13.23 | 0.00 | 0.00 | 2.40 |
2480 | 3798 | 9.525826 | CCTTTGCAAATCCTATCCTATAGAATT | 57.474 | 33.333 | 13.23 | 0.00 | 0.00 | 2.17 |
2482 | 3800 | 9.520515 | TTTGCAAATCCTATCCTATAGAATTCC | 57.479 | 33.333 | 8.05 | 0.00 | 0.00 | 3.01 |
2483 | 3801 | 8.454859 | TGCAAATCCTATCCTATAGAATTCCT | 57.545 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
2484 | 3802 | 9.560860 | TGCAAATCCTATCCTATAGAATTCCTA | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
2506 | 3824 | 9.250246 | TCCTATAAAATTCCTACAAACCAAAGG | 57.750 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
2507 | 3825 | 9.250246 | CCTATAAAATTCCTACAAACCAAAGGA | 57.750 | 33.333 | 0.00 | 0.00 | 37.64 | 3.36 |
2509 | 3827 | 6.419484 | AAAATTCCTACAAACCAAAGGAGG | 57.581 | 37.500 | 0.00 | 0.00 | 40.43 | 4.30 |
2510 | 3828 | 2.579410 | TCCTACAAACCAAAGGAGGC | 57.421 | 50.000 | 0.00 | 0.00 | 34.46 | 4.70 |
2511 | 3829 | 1.074889 | TCCTACAAACCAAAGGAGGCC | 59.925 | 52.381 | 0.00 | 0.00 | 34.46 | 5.19 |
2512 | 3830 | 1.075536 | CCTACAAACCAAAGGAGGCCT | 59.924 | 52.381 | 3.86 | 3.86 | 33.87 | 5.19 |
2513 | 3831 | 2.307686 | CCTACAAACCAAAGGAGGCCTA | 59.692 | 50.000 | 4.42 | 0.00 | 31.13 | 3.93 |
2514 | 3832 | 3.245122 | CCTACAAACCAAAGGAGGCCTAA | 60.245 | 47.826 | 4.42 | 0.00 | 31.13 | 2.69 |
2515 | 3833 | 2.876581 | ACAAACCAAAGGAGGCCTAAG | 58.123 | 47.619 | 4.42 | 0.00 | 31.13 | 2.18 |
2516 | 3834 | 2.177016 | ACAAACCAAAGGAGGCCTAAGT | 59.823 | 45.455 | 4.42 | 0.00 | 31.13 | 2.24 |
2517 | 3835 | 3.230976 | CAAACCAAAGGAGGCCTAAGTT | 58.769 | 45.455 | 4.42 | 0.00 | 31.13 | 2.66 |
2518 | 3836 | 3.612795 | AACCAAAGGAGGCCTAAGTTT | 57.387 | 42.857 | 4.42 | 2.47 | 31.13 | 2.66 |
2519 | 3837 | 3.612795 | ACCAAAGGAGGCCTAAGTTTT | 57.387 | 42.857 | 4.42 | 0.91 | 31.13 | 2.43 |
2520 | 3838 | 3.230976 | ACCAAAGGAGGCCTAAGTTTTG | 58.769 | 45.455 | 4.42 | 13.75 | 31.13 | 2.44 |
2521 | 3839 | 3.117284 | ACCAAAGGAGGCCTAAGTTTTGA | 60.117 | 43.478 | 22.45 | 0.00 | 31.13 | 2.69 |
2522 | 3840 | 3.895041 | CCAAAGGAGGCCTAAGTTTTGAA | 59.105 | 43.478 | 22.45 | 0.00 | 31.13 | 2.69 |
2523 | 3841 | 4.528206 | CCAAAGGAGGCCTAAGTTTTGAAT | 59.472 | 41.667 | 22.45 | 0.00 | 31.13 | 2.57 |
2524 | 3842 | 5.012046 | CCAAAGGAGGCCTAAGTTTTGAATT | 59.988 | 40.000 | 22.45 | 1.66 | 31.13 | 2.17 |
2525 | 3843 | 6.464322 | CCAAAGGAGGCCTAAGTTTTGAATTT | 60.464 | 38.462 | 22.45 | 5.70 | 31.13 | 1.82 |
2526 | 3844 | 5.728637 | AGGAGGCCTAAGTTTTGAATTTG | 57.271 | 39.130 | 4.42 | 0.00 | 28.47 | 2.32 |
2527 | 3845 | 4.528206 | AGGAGGCCTAAGTTTTGAATTTGG | 59.472 | 41.667 | 4.42 | 0.00 | 28.47 | 3.28 |
2528 | 3846 | 4.283467 | GGAGGCCTAAGTTTTGAATTTGGT | 59.717 | 41.667 | 4.42 | 0.00 | 0.00 | 3.67 |
2529 | 3847 | 5.221641 | GGAGGCCTAAGTTTTGAATTTGGTT | 60.222 | 40.000 | 4.42 | 0.00 | 0.00 | 3.67 |
2530 | 3848 | 5.853936 | AGGCCTAAGTTTTGAATTTGGTTC | 58.146 | 37.500 | 1.29 | 0.00 | 37.35 | 3.62 |
2531 | 3849 | 5.365314 | AGGCCTAAGTTTTGAATTTGGTTCA | 59.635 | 36.000 | 1.29 | 0.00 | 44.87 | 3.18 |
2532 | 3850 | 5.696270 | GGCCTAAGTTTTGAATTTGGTTCAG | 59.304 | 40.000 | 0.00 | 0.00 | 46.85 | 3.02 |
2533 | 3851 | 6.280643 | GCCTAAGTTTTGAATTTGGTTCAGT | 58.719 | 36.000 | 0.00 | 0.00 | 46.85 | 3.41 |
2534 | 3852 | 6.420903 | GCCTAAGTTTTGAATTTGGTTCAGTC | 59.579 | 38.462 | 0.00 | 0.00 | 46.85 | 3.51 |
2535 | 3853 | 7.488322 | CCTAAGTTTTGAATTTGGTTCAGTCA | 58.512 | 34.615 | 0.00 | 0.00 | 46.85 | 3.41 |
2536 | 3854 | 7.978975 | CCTAAGTTTTGAATTTGGTTCAGTCAA | 59.021 | 33.333 | 0.00 | 0.00 | 46.85 | 3.18 |
2537 | 3855 | 9.533253 | CTAAGTTTTGAATTTGGTTCAGTCAAT | 57.467 | 29.630 | 0.00 | 0.00 | 46.85 | 2.57 |
2538 | 3856 | 8.791327 | AAGTTTTGAATTTGGTTCAGTCAATT | 57.209 | 26.923 | 0.00 | 0.00 | 46.85 | 2.32 |
2539 | 3857 | 8.791327 | AGTTTTGAATTTGGTTCAGTCAATTT | 57.209 | 26.923 | 0.00 | 0.00 | 46.85 | 1.82 |
2540 | 3858 | 9.230122 | AGTTTTGAATTTGGTTCAGTCAATTTT | 57.770 | 25.926 | 0.00 | 0.00 | 46.85 | 1.82 |
2541 | 3859 | 9.489393 | GTTTTGAATTTGGTTCAGTCAATTTTC | 57.511 | 29.630 | 0.00 | 0.00 | 46.85 | 2.29 |
2542 | 3860 | 8.783833 | TTTGAATTTGGTTCAGTCAATTTTCA | 57.216 | 26.923 | 0.00 | 0.00 | 46.85 | 2.69 |
2583 | 3901 | 2.660064 | GGGGAGGAAGAAGCTCGCA | 61.660 | 63.158 | 0.00 | 0.00 | 32.66 | 5.10 |
2588 | 3906 | 2.105466 | GGAAGAAGCTCGCAGGCAG | 61.105 | 63.158 | 0.00 | 0.00 | 34.17 | 4.85 |
2677 | 3995 | 4.206943 | AAAAACCGGTCCCCGCCA | 62.207 | 61.111 | 8.04 | 0.00 | 46.86 | 5.69 |
2694 | 4012 | 0.842635 | CCAAGGCTAGAGGAATGGCT | 59.157 | 55.000 | 0.00 | 0.00 | 38.25 | 4.75 |
2738 | 4057 | 2.125225 | GGAGGTTGAGGGGAGGGT | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2746 | 4065 | 4.423209 | AGGGGAGGGTGAGGAGGC | 62.423 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
2829 | 4157 | 3.680196 | GCTGGAGGTAGATGAACAGGAAC | 60.680 | 52.174 | 0.00 | 0.00 | 0.00 | 3.62 |
2855 | 4183 | 4.287067 | TGTTCAGAGGTGGAAGAAAGCTAT | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 2.97 |
2856 | 4184 | 5.483937 | TGTTCAGAGGTGGAAGAAAGCTATA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 1.31 |
2857 | 4185 | 5.599999 | TCAGAGGTGGAAGAAAGCTATAC | 57.400 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
2858 | 4186 | 4.406003 | TCAGAGGTGGAAGAAAGCTATACC | 59.594 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
2859 | 4187 | 3.385111 | AGAGGTGGAAGAAAGCTATACCG | 59.615 | 47.826 | 0.00 | 0.00 | 30.94 | 4.02 |
2870 | 4198 | 0.508641 | GCTATACCGCGTTGCATCTG | 59.491 | 55.000 | 4.92 | 0.00 | 0.00 | 2.90 |
2943 | 4271 | 1.931345 | TACCCCTAGCCTCTCCCTTA | 58.069 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2951 | 4279 | 4.843516 | CCTAGCCTCTCCCTTATTCTCAAT | 59.156 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.340034 | TGGATGTACCAAATTGTCGTCC | 58.660 | 45.455 | 11.51 | 11.51 | 46.75 | 4.79 |
33 | 34 | 0.941463 | CTCGCTGCGGATGGATGTAC | 60.941 | 60.000 | 23.03 | 0.00 | 0.00 | 2.90 |
141 | 142 | 0.992072 | CGTTCGATTGTGACATCGCT | 59.008 | 50.000 | 10.92 | 0.00 | 39.86 | 4.93 |
164 | 165 | 4.718961 | GGTGATGGATGTAGCAATTACCT | 58.281 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
259 | 261 | 7.538303 | AAAACACATCAACAATCTCCAAAAC | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
420 | 430 | 1.792949 | GCAACATCTCTCGTGTCGTTT | 59.207 | 47.619 | 0.00 | 0.00 | 0.00 | 3.60 |
503 | 513 | 0.685131 | TGGCTGCCAATGAATCCCAG | 60.685 | 55.000 | 21.08 | 0.00 | 0.00 | 4.45 |
519 | 529 | 3.908081 | CCGGGATTGCAGCATGGC | 61.908 | 66.667 | 0.00 | 0.00 | 35.86 | 4.40 |
575 | 585 | 2.835895 | GGTGGTGTTTGCCCCGTT | 60.836 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
576 | 586 | 3.785122 | GAGGTGGTGTTTGCCCCGT | 62.785 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
637 | 657 | 4.344865 | GACCCACACGCCCACCAT | 62.345 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
700 | 720 | 6.725101 | ATTAGATCTGATCCTCTCTCTCCT | 57.275 | 41.667 | 13.83 | 0.00 | 0.00 | 3.69 |
784 | 808 | 2.822255 | GCAATGTTAGGCGCCGGA | 60.822 | 61.111 | 23.20 | 10.93 | 0.00 | 5.14 |
798 | 822 | 5.592688 | GCAATAGTATTTGTCTAAGGGGCAA | 59.407 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
912 | 2181 | 5.278169 | CCATTTGCTATCTCAAGTGTATGGC | 60.278 | 44.000 | 0.00 | 0.00 | 33.50 | 4.40 |
930 | 2199 | 3.385755 | GGATGAGGACCCAAATCCATTTG | 59.614 | 47.826 | 11.22 | 5.21 | 45.04 | 2.32 |
969 | 2241 | 4.530857 | GCGGGATGGAGTGGACGG | 62.531 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
970 | 2242 | 3.723235 | CTGCGGGATGGAGTGGACG | 62.723 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
971 | 2243 | 2.187946 | CTGCGGGATGGAGTGGAC | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1798 | 3085 | 0.313043 | GCTTGCAGCAAGAAAGAGCA | 59.687 | 50.000 | 34.93 | 0.00 | 43.42 | 4.26 |
1811 | 3098 | 4.039488 | AGAAGATTGGTGATTTTGCTTGCA | 59.961 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
1817 | 3105 | 5.710513 | TGGACAGAAGATTGGTGATTTTG | 57.289 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
1821 | 3109 | 4.916041 | TCTTGGACAGAAGATTGGTGAT | 57.084 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
1867 | 3175 | 3.055675 | ACCCTGCAAAATCACATCCATTG | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
1872 | 3180 | 1.404583 | GCCACCCTGCAAAATCACATC | 60.405 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
1893 | 3201 | 0.250234 | TCTTGTCCCCGATCAGCTTG | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1947 | 3255 | 6.499350 | AGTTGGTTACTAGGATCTTGGTGTAA | 59.501 | 38.462 | 3.97 | 0.94 | 34.56 | 2.41 |
1978 | 3286 | 4.890581 | CCACTACTACTACTGCTCAAGGAT | 59.109 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
2050 | 3364 | 4.884744 | TGGACGACAGGAAAGAATGAAAAA | 59.115 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
2101 | 3415 | 1.896220 | TCCACTGTTCTTGCATGTCC | 58.104 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2103 | 3417 | 3.225104 | ACATTCCACTGTTCTTGCATGT | 58.775 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
2105 | 3419 | 3.553508 | GCAACATTCCACTGTTCTTGCAT | 60.554 | 43.478 | 0.00 | 0.00 | 37.25 | 3.96 |
2107 | 3421 | 2.223782 | TGCAACATTCCACTGTTCTTGC | 60.224 | 45.455 | 0.00 | 0.00 | 37.25 | 4.01 |
2123 | 3437 | 3.715628 | AAACTCAACTCCATGTGCAAC | 57.284 | 42.857 | 0.00 | 0.00 | 37.35 | 4.17 |
2124 | 3438 | 3.446873 | ACAAAACTCAACTCCATGTGCAA | 59.553 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
2126 | 3440 | 3.715628 | ACAAAACTCAACTCCATGTGC | 57.284 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
2127 | 3441 | 6.589523 | TCAAAAACAAAACTCAACTCCATGTG | 59.410 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
2128 | 3442 | 6.696411 | TCAAAAACAAAACTCAACTCCATGT | 58.304 | 32.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2129 | 3443 | 7.775397 | ATCAAAAACAAAACTCAACTCCATG | 57.225 | 32.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2137 | 3453 | 8.073467 | ACCTTCCTTATCAAAAACAAAACTCA | 57.927 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
2172 | 3490 | 2.421952 | GCATTGGTGGATCTAGAAGCCA | 60.422 | 50.000 | 12.33 | 12.33 | 0.00 | 4.75 |
2205 | 3523 | 9.950496 | CCTTAGGCTATTGTGTGAGAATAATAT | 57.050 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2224 | 3542 | 0.039764 | AACCAAAGGAGGCCTTAGGC | 59.960 | 55.000 | 16.07 | 16.07 | 43.92 | 3.93 |
2225 | 3543 | 1.354368 | TGAACCAAAGGAGGCCTTAGG | 59.646 | 52.381 | 6.77 | 7.55 | 43.92 | 2.69 |
2226 | 3544 | 2.879103 | TGAACCAAAGGAGGCCTTAG | 57.121 | 50.000 | 6.77 | 0.00 | 43.92 | 2.18 |
2227 | 3545 | 3.202151 | CCTATGAACCAAAGGAGGCCTTA | 59.798 | 47.826 | 6.77 | 0.00 | 43.92 | 2.69 |
2229 | 3547 | 1.566231 | CCTATGAACCAAAGGAGGCCT | 59.434 | 52.381 | 3.86 | 3.86 | 33.87 | 5.19 |
2230 | 3548 | 1.564348 | TCCTATGAACCAAAGGAGGCC | 59.436 | 52.381 | 0.00 | 0.00 | 34.46 | 5.19 |
2231 | 3549 | 3.584733 | ATCCTATGAACCAAAGGAGGC | 57.415 | 47.619 | 0.00 | 0.00 | 42.53 | 4.70 |
2232 | 3550 | 6.500589 | TTCTATCCTATGAACCAAAGGAGG | 57.499 | 41.667 | 0.00 | 0.00 | 42.53 | 4.30 |
2233 | 3551 | 8.986929 | AATTTCTATCCTATGAACCAAAGGAG | 57.013 | 34.615 | 0.00 | 0.00 | 42.53 | 3.69 |
2234 | 3552 | 9.768215 | AAAATTTCTATCCTATGAACCAAAGGA | 57.232 | 29.630 | 0.00 | 0.00 | 43.38 | 3.36 |
2268 | 3586 | 9.396022 | GTCATTTCACTTCCTATGATTTTCCTA | 57.604 | 33.333 | 0.00 | 0.00 | 30.51 | 2.94 |
2269 | 3587 | 7.890127 | TGTCATTTCACTTCCTATGATTTTCCT | 59.110 | 33.333 | 0.00 | 0.00 | 30.51 | 3.36 |
2270 | 3588 | 8.055279 | TGTCATTTCACTTCCTATGATTTTCC | 57.945 | 34.615 | 0.00 | 0.00 | 30.51 | 3.13 |
2271 | 3589 | 9.512435 | CATGTCATTTCACTTCCTATGATTTTC | 57.488 | 33.333 | 0.00 | 0.00 | 30.51 | 2.29 |
2272 | 3590 | 7.977853 | GCATGTCATTTCACTTCCTATGATTTT | 59.022 | 33.333 | 0.00 | 0.00 | 30.51 | 1.82 |
2273 | 3591 | 7.123098 | TGCATGTCATTTCACTTCCTATGATTT | 59.877 | 33.333 | 0.00 | 0.00 | 30.51 | 2.17 |
2274 | 3592 | 6.604396 | TGCATGTCATTTCACTTCCTATGATT | 59.396 | 34.615 | 0.00 | 0.00 | 30.51 | 2.57 |
2275 | 3593 | 6.124340 | TGCATGTCATTTCACTTCCTATGAT | 58.876 | 36.000 | 0.00 | 0.00 | 30.51 | 2.45 |
2276 | 3594 | 5.499313 | TGCATGTCATTTCACTTCCTATGA | 58.501 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
2277 | 3595 | 5.823209 | TGCATGTCATTTCACTTCCTATG | 57.177 | 39.130 | 0.00 | 0.00 | 0.00 | 2.23 |
2278 | 3596 | 6.363065 | AGATGCATGTCATTTCACTTCCTAT | 58.637 | 36.000 | 2.46 | 0.00 | 35.05 | 2.57 |
2279 | 3597 | 5.748402 | AGATGCATGTCATTTCACTTCCTA | 58.252 | 37.500 | 2.46 | 0.00 | 35.05 | 2.94 |
2280 | 3598 | 4.597004 | AGATGCATGTCATTTCACTTCCT | 58.403 | 39.130 | 2.46 | 0.00 | 35.05 | 3.36 |
2281 | 3599 | 4.397103 | TGAGATGCATGTCATTTCACTTCC | 59.603 | 41.667 | 21.70 | 0.00 | 40.21 | 3.46 |
2282 | 3600 | 5.556355 | TGAGATGCATGTCATTTCACTTC | 57.444 | 39.130 | 21.70 | 0.00 | 40.21 | 3.01 |
2283 | 3601 | 5.970317 | TTGAGATGCATGTCATTTCACTT | 57.030 | 34.783 | 25.41 | 0.00 | 43.42 | 3.16 |
2284 | 3602 | 6.405508 | GGAATTGAGATGCATGTCATTTCACT | 60.406 | 38.462 | 36.46 | 19.63 | 43.42 | 3.41 |
2285 | 3603 | 5.747197 | GGAATTGAGATGCATGTCATTTCAC | 59.253 | 40.000 | 36.46 | 28.44 | 43.42 | 3.18 |
2286 | 3604 | 5.449451 | CGGAATTGAGATGCATGTCATTTCA | 60.449 | 40.000 | 36.46 | 22.91 | 42.45 | 2.69 |
2287 | 3605 | 4.974275 | CGGAATTGAGATGCATGTCATTTC | 59.026 | 41.667 | 32.69 | 32.69 | 38.57 | 2.17 |
2288 | 3606 | 4.641541 | TCGGAATTGAGATGCATGTCATTT | 59.358 | 37.500 | 25.41 | 25.37 | 35.05 | 2.32 |
2289 | 3607 | 4.201657 | TCGGAATTGAGATGCATGTCATT | 58.798 | 39.130 | 25.41 | 19.23 | 35.05 | 2.57 |
2290 | 3608 | 3.812262 | TCGGAATTGAGATGCATGTCAT | 58.188 | 40.909 | 25.41 | 13.07 | 38.32 | 3.06 |
2291 | 3609 | 3.264998 | TCGGAATTGAGATGCATGTCA | 57.735 | 42.857 | 21.70 | 21.70 | 0.00 | 3.58 |
2292 | 3610 | 3.562973 | ACATCGGAATTGAGATGCATGTC | 59.437 | 43.478 | 16.63 | 16.63 | 45.86 | 3.06 |
2293 | 3611 | 3.548770 | ACATCGGAATTGAGATGCATGT | 58.451 | 40.909 | 2.46 | 0.00 | 45.86 | 3.21 |
2294 | 3612 | 3.562557 | TGACATCGGAATTGAGATGCATG | 59.437 | 43.478 | 2.46 | 0.00 | 45.86 | 4.06 |
2295 | 3613 | 3.812262 | TGACATCGGAATTGAGATGCAT | 58.188 | 40.909 | 15.70 | 0.00 | 45.86 | 3.96 |
2296 | 3614 | 3.264998 | TGACATCGGAATTGAGATGCA | 57.735 | 42.857 | 15.70 | 12.64 | 45.86 | 3.96 |
2297 | 3615 | 4.825546 | AATGACATCGGAATTGAGATGC | 57.174 | 40.909 | 15.70 | 10.93 | 45.86 | 3.91 |
2298 | 3616 | 6.367686 | TCAAATGACATCGGAATTGAGATG | 57.632 | 37.500 | 14.69 | 14.69 | 46.95 | 2.90 |
2299 | 3617 | 6.514541 | GCATCAAATGACATCGGAATTGAGAT | 60.515 | 38.462 | 5.88 | 0.00 | 31.14 | 2.75 |
2300 | 3618 | 5.220912 | GCATCAAATGACATCGGAATTGAGA | 60.221 | 40.000 | 5.88 | 0.00 | 31.14 | 3.27 |
2301 | 3619 | 4.974275 | GCATCAAATGACATCGGAATTGAG | 59.026 | 41.667 | 5.88 | 1.27 | 31.14 | 3.02 |
2302 | 3620 | 4.398673 | TGCATCAAATGACATCGGAATTGA | 59.601 | 37.500 | 2.76 | 2.76 | 0.00 | 2.57 |
2303 | 3621 | 4.674475 | TGCATCAAATGACATCGGAATTG | 58.326 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2304 | 3622 | 4.987408 | TGCATCAAATGACATCGGAATT | 57.013 | 36.364 | 0.00 | 0.00 | 0.00 | 2.17 |
2305 | 3623 | 5.182570 | CCTATGCATCAAATGACATCGGAAT | 59.817 | 40.000 | 0.19 | 0.00 | 34.59 | 3.01 |
2306 | 3624 | 4.516321 | CCTATGCATCAAATGACATCGGAA | 59.484 | 41.667 | 0.19 | 0.00 | 34.59 | 4.30 |
2307 | 3625 | 4.067192 | CCTATGCATCAAATGACATCGGA | 58.933 | 43.478 | 0.19 | 0.00 | 34.59 | 4.55 |
2308 | 3626 | 4.067192 | TCCTATGCATCAAATGACATCGG | 58.933 | 43.478 | 0.19 | 1.24 | 34.30 | 4.18 |
2309 | 3627 | 5.874895 | ATCCTATGCATCAAATGACATCG | 57.125 | 39.130 | 0.19 | 0.00 | 32.25 | 3.84 |
2310 | 3628 | 8.557592 | TTCTATCCTATGCATCAAATGACATC | 57.442 | 34.615 | 0.19 | 0.00 | 32.25 | 3.06 |
2311 | 3629 | 9.529823 | AATTCTATCCTATGCATCAAATGACAT | 57.470 | 29.630 | 0.19 | 0.00 | 33.67 | 3.06 |
2312 | 3630 | 8.929260 | AATTCTATCCTATGCATCAAATGACA | 57.071 | 30.769 | 0.19 | 0.00 | 0.00 | 3.58 |
2338 | 3656 | 8.635765 | AACATTAGCCTAGACTCAATGAAAAA | 57.364 | 30.769 | 12.01 | 0.00 | 32.29 | 1.94 |
2339 | 3657 | 8.635765 | AAACATTAGCCTAGACTCAATGAAAA | 57.364 | 30.769 | 12.01 | 0.00 | 32.29 | 2.29 |
2340 | 3658 | 8.635765 | AAAACATTAGCCTAGACTCAATGAAA | 57.364 | 30.769 | 12.01 | 0.00 | 32.29 | 2.69 |
2341 | 3659 | 8.635765 | AAAAACATTAGCCTAGACTCAATGAA | 57.364 | 30.769 | 12.01 | 0.00 | 32.29 | 2.57 |
2370 | 3688 | 5.376854 | AATCAATCCTTCACGTTTTGGAG | 57.623 | 39.130 | 6.38 | 0.00 | 31.59 | 3.86 |
2371 | 3689 | 4.217550 | GGAATCAATCCTTCACGTTTTGGA | 59.782 | 41.667 | 3.13 | 3.13 | 45.56 | 3.53 |
2372 | 3690 | 4.485163 | GGAATCAATCCTTCACGTTTTGG | 58.515 | 43.478 | 0.00 | 0.00 | 45.56 | 3.28 |
2413 | 3731 | 6.239317 | GCCCTTTGGTTTATAGGAATGGATTC | 60.239 | 42.308 | 0.00 | 0.00 | 36.08 | 2.52 |
2414 | 3732 | 5.602561 | GCCCTTTGGTTTATAGGAATGGATT | 59.397 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2415 | 3733 | 5.103086 | AGCCCTTTGGTTTATAGGAATGGAT | 60.103 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2416 | 3734 | 4.231890 | AGCCCTTTGGTTTATAGGAATGGA | 59.768 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2417 | 3735 | 4.546674 | AGCCCTTTGGTTTATAGGAATGG | 58.453 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2418 | 3736 | 5.656416 | TGAAGCCCTTTGGTTTATAGGAATG | 59.344 | 40.000 | 0.00 | 0.00 | 34.87 | 2.67 |
2419 | 3737 | 5.837829 | TGAAGCCCTTTGGTTTATAGGAAT | 58.162 | 37.500 | 0.00 | 0.00 | 34.87 | 3.01 |
2420 | 3738 | 5.263872 | TGAAGCCCTTTGGTTTATAGGAA | 57.736 | 39.130 | 0.00 | 0.00 | 34.87 | 3.36 |
2421 | 3739 | 4.938575 | TGAAGCCCTTTGGTTTATAGGA | 57.061 | 40.909 | 0.00 | 0.00 | 34.87 | 2.94 |
2422 | 3740 | 5.105351 | CCTTTGAAGCCCTTTGGTTTATAGG | 60.105 | 44.000 | 0.00 | 0.00 | 34.87 | 2.57 |
2423 | 3741 | 5.714806 | TCCTTTGAAGCCCTTTGGTTTATAG | 59.285 | 40.000 | 0.00 | 0.00 | 34.87 | 1.31 |
2424 | 3742 | 5.646215 | TCCTTTGAAGCCCTTTGGTTTATA | 58.354 | 37.500 | 0.00 | 0.00 | 34.87 | 0.98 |
2425 | 3743 | 4.488770 | TCCTTTGAAGCCCTTTGGTTTAT | 58.511 | 39.130 | 0.00 | 0.00 | 34.87 | 1.40 |
2426 | 3744 | 3.917300 | TCCTTTGAAGCCCTTTGGTTTA | 58.083 | 40.909 | 0.00 | 0.00 | 34.87 | 2.01 |
2427 | 3745 | 2.758130 | TCCTTTGAAGCCCTTTGGTTT | 58.242 | 42.857 | 0.00 | 0.00 | 37.85 | 3.27 |
2428 | 3746 | 2.470057 | TCCTTTGAAGCCCTTTGGTT | 57.530 | 45.000 | 0.00 | 0.00 | 37.39 | 3.67 |
2429 | 3747 | 2.470057 | TTCCTTTGAAGCCCTTTGGT | 57.530 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2430 | 3748 | 4.356405 | AAATTCCTTTGAAGCCCTTTGG | 57.644 | 40.909 | 0.00 | 0.00 | 33.05 | 3.28 |
2431 | 3749 | 5.239306 | GGAAAAATTCCTTTGAAGCCCTTTG | 59.761 | 40.000 | 1.86 | 0.00 | 46.57 | 2.77 |
2432 | 3750 | 5.376625 | GGAAAAATTCCTTTGAAGCCCTTT | 58.623 | 37.500 | 1.86 | 0.00 | 46.57 | 3.11 |
2433 | 3751 | 4.973168 | GGAAAAATTCCTTTGAAGCCCTT | 58.027 | 39.130 | 1.86 | 0.00 | 46.57 | 3.95 |
2434 | 3752 | 4.623932 | GGAAAAATTCCTTTGAAGCCCT | 57.376 | 40.909 | 1.86 | 0.00 | 46.57 | 5.19 |
2446 | 3764 | 8.043113 | AGGATAGGATTTGCAAAGGAAAAATTC | 58.957 | 33.333 | 18.19 | 7.27 | 0.00 | 2.17 |
2447 | 3765 | 7.921304 | AGGATAGGATTTGCAAAGGAAAAATT | 58.079 | 30.769 | 18.19 | 0.00 | 0.00 | 1.82 |
2448 | 3766 | 7.500629 | AGGATAGGATTTGCAAAGGAAAAAT | 57.499 | 32.000 | 18.19 | 6.18 | 0.00 | 1.82 |
2449 | 3767 | 6.933514 | AGGATAGGATTTGCAAAGGAAAAA | 57.066 | 33.333 | 18.19 | 1.42 | 0.00 | 1.94 |
2450 | 3768 | 9.354673 | CTATAGGATAGGATTTGCAAAGGAAAA | 57.645 | 33.333 | 18.19 | 2.48 | 0.00 | 2.29 |
2451 | 3769 | 8.723365 | TCTATAGGATAGGATTTGCAAAGGAAA | 58.277 | 33.333 | 18.19 | 3.91 | 0.00 | 3.13 |
2452 | 3770 | 8.275187 | TCTATAGGATAGGATTTGCAAAGGAA | 57.725 | 34.615 | 18.19 | 3.55 | 0.00 | 3.36 |
2453 | 3771 | 7.872061 | TCTATAGGATAGGATTTGCAAAGGA | 57.128 | 36.000 | 18.19 | 2.96 | 0.00 | 3.36 |
2454 | 3772 | 9.525826 | AATTCTATAGGATAGGATTTGCAAAGG | 57.474 | 33.333 | 18.19 | 0.00 | 0.00 | 3.11 |
2456 | 3774 | 9.520515 | GGAATTCTATAGGATAGGATTTGCAAA | 57.479 | 33.333 | 15.44 | 15.44 | 0.00 | 3.68 |
2457 | 3775 | 8.894592 | AGGAATTCTATAGGATAGGATTTGCAA | 58.105 | 33.333 | 5.23 | 0.00 | 0.00 | 4.08 |
2458 | 3776 | 8.454859 | AGGAATTCTATAGGATAGGATTTGCA | 57.545 | 34.615 | 5.23 | 0.00 | 0.00 | 4.08 |
2480 | 3798 | 9.250246 | CCTTTGGTTTGTAGGAATTTTATAGGA | 57.750 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
2481 | 3799 | 9.250246 | TCCTTTGGTTTGTAGGAATTTTATAGG | 57.750 | 33.333 | 0.00 | 0.00 | 35.20 | 2.57 |
2483 | 3801 | 9.250246 | CCTCCTTTGGTTTGTAGGAATTTTATA | 57.750 | 33.333 | 0.00 | 0.00 | 37.61 | 0.98 |
2484 | 3802 | 7.310423 | GCCTCCTTTGGTTTGTAGGAATTTTAT | 60.310 | 37.037 | 0.00 | 0.00 | 37.61 | 1.40 |
2485 | 3803 | 6.014925 | GCCTCCTTTGGTTTGTAGGAATTTTA | 60.015 | 38.462 | 0.00 | 0.00 | 37.61 | 1.52 |
2486 | 3804 | 5.221641 | GCCTCCTTTGGTTTGTAGGAATTTT | 60.222 | 40.000 | 0.00 | 0.00 | 37.61 | 1.82 |
2487 | 3805 | 4.283467 | GCCTCCTTTGGTTTGTAGGAATTT | 59.717 | 41.667 | 0.00 | 0.00 | 37.61 | 1.82 |
2488 | 3806 | 3.832490 | GCCTCCTTTGGTTTGTAGGAATT | 59.168 | 43.478 | 0.00 | 0.00 | 37.61 | 2.17 |
2489 | 3807 | 3.431415 | GCCTCCTTTGGTTTGTAGGAAT | 58.569 | 45.455 | 0.00 | 0.00 | 37.61 | 3.01 |
2490 | 3808 | 2.490168 | GGCCTCCTTTGGTTTGTAGGAA | 60.490 | 50.000 | 0.00 | 0.00 | 37.61 | 3.36 |
2491 | 3809 | 1.074889 | GGCCTCCTTTGGTTTGTAGGA | 59.925 | 52.381 | 0.00 | 0.00 | 36.65 | 2.94 |
2492 | 3810 | 1.075536 | AGGCCTCCTTTGGTTTGTAGG | 59.924 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2493 | 3811 | 2.586648 | AGGCCTCCTTTGGTTTGTAG | 57.413 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2494 | 3812 | 3.396611 | ACTTAGGCCTCCTTTGGTTTGTA | 59.603 | 43.478 | 9.68 | 0.00 | 34.61 | 2.41 |
2495 | 3813 | 2.177016 | ACTTAGGCCTCCTTTGGTTTGT | 59.823 | 45.455 | 9.68 | 0.00 | 34.61 | 2.83 |
2496 | 3814 | 2.876581 | ACTTAGGCCTCCTTTGGTTTG | 58.123 | 47.619 | 9.68 | 0.00 | 34.61 | 2.93 |
2497 | 3815 | 3.612795 | AACTTAGGCCTCCTTTGGTTT | 57.387 | 42.857 | 9.68 | 0.00 | 34.61 | 3.27 |
2498 | 3816 | 3.612795 | AAACTTAGGCCTCCTTTGGTT | 57.387 | 42.857 | 9.68 | 3.79 | 34.61 | 3.67 |
2499 | 3817 | 3.117284 | TCAAAACTTAGGCCTCCTTTGGT | 60.117 | 43.478 | 9.68 | 0.00 | 34.61 | 3.67 |
2500 | 3818 | 3.496331 | TCAAAACTTAGGCCTCCTTTGG | 58.504 | 45.455 | 9.68 | 2.95 | 34.61 | 3.28 |
2501 | 3819 | 5.728637 | ATTCAAAACTTAGGCCTCCTTTG | 57.271 | 39.130 | 9.68 | 14.77 | 34.61 | 2.77 |
2502 | 3820 | 6.464322 | CCAAATTCAAAACTTAGGCCTCCTTT | 60.464 | 38.462 | 9.68 | 1.95 | 34.61 | 3.11 |
2503 | 3821 | 5.012046 | CCAAATTCAAAACTTAGGCCTCCTT | 59.988 | 40.000 | 9.68 | 0.00 | 34.61 | 3.36 |
2504 | 3822 | 4.528206 | CCAAATTCAAAACTTAGGCCTCCT | 59.472 | 41.667 | 9.68 | 0.00 | 37.71 | 3.69 |
2505 | 3823 | 4.283467 | ACCAAATTCAAAACTTAGGCCTCC | 59.717 | 41.667 | 9.68 | 0.00 | 0.00 | 4.30 |
2506 | 3824 | 5.468540 | ACCAAATTCAAAACTTAGGCCTC | 57.531 | 39.130 | 9.68 | 0.00 | 0.00 | 4.70 |
2507 | 3825 | 5.365314 | TGAACCAAATTCAAAACTTAGGCCT | 59.635 | 36.000 | 11.78 | 11.78 | 44.59 | 5.19 |
2508 | 3826 | 5.606505 | TGAACCAAATTCAAAACTTAGGCC | 58.393 | 37.500 | 0.00 | 0.00 | 44.59 | 5.19 |
2509 | 3827 | 6.280643 | ACTGAACCAAATTCAAAACTTAGGC | 58.719 | 36.000 | 0.00 | 0.00 | 46.80 | 3.93 |
2510 | 3828 | 7.488322 | TGACTGAACCAAATTCAAAACTTAGG | 58.512 | 34.615 | 0.00 | 0.00 | 46.80 | 2.69 |
2511 | 3829 | 8.925161 | TTGACTGAACCAAATTCAAAACTTAG | 57.075 | 30.769 | 0.00 | 0.00 | 46.80 | 2.18 |
2512 | 3830 | 9.883142 | AATTGACTGAACCAAATTCAAAACTTA | 57.117 | 25.926 | 0.00 | 0.00 | 46.80 | 2.24 |
2513 | 3831 | 8.791327 | AATTGACTGAACCAAATTCAAAACTT | 57.209 | 26.923 | 0.00 | 0.00 | 46.80 | 2.66 |
2514 | 3832 | 8.791327 | AAATTGACTGAACCAAATTCAAAACT | 57.209 | 26.923 | 0.00 | 0.00 | 46.80 | 2.66 |
2515 | 3833 | 9.489393 | GAAAATTGACTGAACCAAATTCAAAAC | 57.511 | 29.630 | 0.00 | 0.00 | 46.80 | 2.43 |
2516 | 3834 | 9.224267 | TGAAAATTGACTGAACCAAATTCAAAA | 57.776 | 25.926 | 0.00 | 0.00 | 46.80 | 2.44 |
2517 | 3835 | 8.663911 | GTGAAAATTGACTGAACCAAATTCAAA | 58.336 | 29.630 | 0.00 | 0.00 | 46.80 | 2.69 |
2518 | 3836 | 8.040132 | AGTGAAAATTGACTGAACCAAATTCAA | 58.960 | 29.630 | 0.00 | 0.00 | 46.80 | 2.69 |
2519 | 3837 | 7.555087 | AGTGAAAATTGACTGAACCAAATTCA | 58.445 | 30.769 | 0.00 | 0.00 | 45.39 | 2.57 |
2520 | 3838 | 9.185192 | CTAGTGAAAATTGACTGAACCAAATTC | 57.815 | 33.333 | 0.00 | 0.00 | 37.88 | 2.17 |
2521 | 3839 | 8.912988 | TCTAGTGAAAATTGACTGAACCAAATT | 58.087 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2522 | 3840 | 8.463930 | TCTAGTGAAAATTGACTGAACCAAAT | 57.536 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2523 | 3841 | 7.873719 | TCTAGTGAAAATTGACTGAACCAAA | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2524 | 3842 | 7.013274 | CCTTCTAGTGAAAATTGACTGAACCAA | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
2525 | 3843 | 6.486657 | CCTTCTAGTGAAAATTGACTGAACCA | 59.513 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
2526 | 3844 | 6.072452 | CCCTTCTAGTGAAAATTGACTGAACC | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 3.62 |
2527 | 3845 | 6.710744 | TCCCTTCTAGTGAAAATTGACTGAAC | 59.289 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2528 | 3846 | 6.837312 | TCCCTTCTAGTGAAAATTGACTGAA | 58.163 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2529 | 3847 | 6.270000 | TCTCCCTTCTAGTGAAAATTGACTGA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2530 | 3848 | 6.467677 | TCTCCCTTCTAGTGAAAATTGACTG | 58.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2531 | 3849 | 6.688073 | TCTCCCTTCTAGTGAAAATTGACT | 57.312 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2532 | 3850 | 7.228706 | TGTTTCTCCCTTCTAGTGAAAATTGAC | 59.771 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2533 | 3851 | 7.287061 | TGTTTCTCCCTTCTAGTGAAAATTGA | 58.713 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2534 | 3852 | 7.510549 | TGTTTCTCCCTTCTAGTGAAAATTG | 57.489 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2535 | 3853 | 6.207614 | GCTGTTTCTCCCTTCTAGTGAAAATT | 59.792 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
2536 | 3854 | 5.707764 | GCTGTTTCTCCCTTCTAGTGAAAAT | 59.292 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2537 | 3855 | 5.063880 | GCTGTTTCTCCCTTCTAGTGAAAA | 58.936 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
2538 | 3856 | 4.505039 | GGCTGTTTCTCCCTTCTAGTGAAA | 60.505 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
2539 | 3857 | 3.008049 | GGCTGTTTCTCCCTTCTAGTGAA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2540 | 3858 | 2.567615 | GGCTGTTTCTCCCTTCTAGTGA | 59.432 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2541 | 3859 | 2.675317 | CGGCTGTTTCTCCCTTCTAGTG | 60.675 | 54.545 | 0.00 | 0.00 | 0.00 | 2.74 |
2542 | 3860 | 1.550976 | CGGCTGTTTCTCCCTTCTAGT | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
2583 | 3901 | 1.386485 | ATGATGGGGTAGCCTGCCT | 60.386 | 57.895 | 11.48 | 0.00 | 0.00 | 4.75 |
2588 | 3906 | 4.407296 | CCTAAGATAGATGATGGGGTAGCC | 59.593 | 50.000 | 1.07 | 1.07 | 0.00 | 3.93 |
2636 | 3954 | 4.719616 | GCGAACTTGCACGACCGC | 62.720 | 66.667 | 14.92 | 14.92 | 35.91 | 5.68 |
2641 | 3959 | 3.777925 | CTCCGGCGAACTTGCACG | 61.778 | 66.667 | 9.30 | 0.00 | 36.28 | 5.34 |
2673 | 3991 | 0.533755 | CCATTCCTCTAGCCTTGGCG | 60.534 | 60.000 | 5.95 | 0.00 | 0.00 | 5.69 |
2677 | 3995 | 2.334023 | CCTAGCCATTCCTCTAGCCTT | 58.666 | 52.381 | 0.00 | 0.00 | 32.88 | 4.35 |
2738 | 4057 | 4.069232 | CGTTGCCTCGCCTCCTCA | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2775 | 4094 | 0.179040 | TTCTTCCACAACCACCGTCC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2777 | 4096 | 0.834612 | TCTTCTTCCACAACCACCGT | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
2829 | 4157 | 3.475566 | TTCTTCCACCTCTGAACAGTG | 57.524 | 47.619 | 1.73 | 0.00 | 0.00 | 3.66 |
2870 | 4198 | 1.204467 | TCATTTTTGGCCTTCGGATGC | 59.796 | 47.619 | 3.32 | 0.00 | 0.00 | 3.91 |
2943 | 4271 | 9.330063 | TCGCTTGACTTCAATAATATTGAGAAT | 57.670 | 29.630 | 14.44 | 5.80 | 35.02 | 2.40 |
2951 | 4279 | 6.345298 | TCATGGTCGCTTGACTTCAATAATA | 58.655 | 36.000 | 0.00 | 0.00 | 42.47 | 0.98 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.