Multiple sequence alignment - TraesCS3D01G003900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G003900 chr3D 100.000 5493 0 0 1 5493 1654945 1660437 0.000000e+00 10144.0
1 TraesCS3D01G003900 chr3D 91.034 145 11 2 5162 5305 1647733 1647876 1.560000e-45 195.0
2 TraesCS3D01G003900 chr3D 96.667 60 2 0 3977 4036 1708269 1708328 3.500000e-17 100.0
3 TraesCS3D01G003900 chr3B 93.580 2134 126 6 3178 5304 3805461 3807590 0.000000e+00 3171.0
4 TraesCS3D01G003900 chr3B 93.393 2134 130 6 3178 5304 4703941 4706070 0.000000e+00 3149.0
5 TraesCS3D01G003900 chr3B 87.893 1082 102 15 891 1950 3803287 3804361 0.000000e+00 1245.0
6 TraesCS3D01G003900 chr3B 87.627 1083 102 17 891 1950 4701766 4702839 0.000000e+00 1229.0
7 TraesCS3D01G003900 chr3B 94.388 196 6 2 290 485 4694342 4694532 4.160000e-76 296.0
8 TraesCS3D01G003900 chr3B 93.878 196 7 2 290 485 3795840 3796030 1.940000e-74 291.0
9 TraesCS3D01G003900 chr3B 98.413 63 1 0 491 553 3796096 3796158 1.620000e-20 111.0
10 TraesCS3D01G003900 chr3B 96.825 63 2 0 491 553 4694598 4694660 7.530000e-19 106.0
11 TraesCS3D01G003900 chr3B 93.651 63 4 0 206 268 3795030 3795092 1.630000e-15 95.3
12 TraesCS3D01G003900 chr3B 93.651 63 4 0 206 268 4693533 4693595 1.630000e-15 95.3
13 TraesCS3D01G003900 chr3B 94.872 39 2 0 2247 2285 121468150 121468112 1.650000e-05 62.1
14 TraesCS3D01G003900 chr3A 88.734 1935 201 10 3178 5103 7386099 7384173 0.000000e+00 2350.0
15 TraesCS3D01G003900 chr3A 93.033 1507 94 5 3225 4724 7312520 7311018 0.000000e+00 2191.0
16 TraesCS3D01G003900 chr3A 87.723 1067 109 16 895 1950 7389171 7388116 0.000000e+00 1225.0
17 TraesCS3D01G003900 chr3A 85.528 1071 115 23 977 2025 7315066 7314014 0.000000e+00 1083.0
18 TraesCS3D01G003900 chr3A 94.369 586 22 3 293 874 7390460 7389882 0.000000e+00 889.0
19 TraesCS3D01G003900 chr3A 85.436 872 66 25 2003 2863 7313421 7312600 0.000000e+00 850.0
20 TraesCS3D01G003900 chr3A 93.455 550 33 3 4757 5305 7311016 7310469 0.000000e+00 813.0
21 TraesCS3D01G003900 chr3A 87.781 311 13 3 3 290 7329235 7328927 1.900000e-89 340.0
22 TraesCS3D01G003900 chr3A 91.667 192 15 1 5113 5303 7363909 7363718 1.170000e-66 265.0
23 TraesCS3D01G003900 chr3A 83.628 226 26 10 386 601 7328875 7328651 9.330000e-48 202.0
24 TraesCS3D01G003900 chr3A 97.101 69 2 0 222 290 7390588 7390520 3.480000e-22 117.0
25 TraesCS3D01G003900 chr3A 96.774 31 1 0 2249 2279 462331629 462331659 1.000000e-02 52.8
26 TraesCS3D01G003900 chrUn 87.382 951 89 16 891 1818 426378185 426377243 0.000000e+00 1062.0
27 TraesCS3D01G003900 chr2B 81.272 849 134 13 1119 1950 755591413 755592253 0.000000e+00 664.0
28 TraesCS3D01G003900 chr2B 88.462 78 9 0 2380 2457 571514376 571514453 1.630000e-15 95.3
29 TraesCS3D01G003900 chr6D 80.649 894 120 27 1092 1951 606135 605261 1.290000e-180 643.0
30 TraesCS3D01G003900 chr6D 79.396 927 124 40 1073 1950 1488749 1489657 4.740000e-165 592.0
31 TraesCS3D01G003900 chr6D 78.715 249 35 10 2931 3166 413053812 413053569 3.430000e-32 150.0
32 TraesCS3D01G003900 chr6B 79.154 993 148 43 995 1950 2072176 2073146 2.790000e-177 632.0
33 TraesCS3D01G003900 chr6B 79.932 887 143 28 1092 1950 5790390 5791269 2.170000e-173 619.0
34 TraesCS3D01G003900 chr6B 79.820 887 144 28 1092 1950 5793808 5794687 1.010000e-171 614.0
35 TraesCS3D01G003900 chr6B 76.923 273 56 6 4674 4943 643635648 643635916 1.230000e-31 148.0
36 TraesCS3D01G003900 chr6B 78.218 101 17 3 2252 2352 717916202 717916297 5.940000e-05 60.2
37 TraesCS3D01G003900 chr6B 100.000 28 0 0 2252 2279 636591063 636591090 1.000000e-02 52.8
38 TraesCS3D01G003900 chr5D 83.137 255 33 5 614 868 333100402 333100646 1.990000e-54 224.0
39 TraesCS3D01G003900 chr5D 81.569 255 38 3 615 869 84221215 84221460 9.330000e-48 202.0
40 TraesCS3D01G003900 chr5D 92.063 63 5 0 2386 2448 167763398 167763336 7.580000e-14 89.8
41 TraesCS3D01G003900 chr5A 85.789 190 24 3 5306 5493 533346495 533346307 1.210000e-46 198.0
42 TraesCS3D01G003900 chr5A 80.078 256 39 10 614 868 434517959 434518203 4.370000e-41 180.0
43 TraesCS3D01G003900 chr5A 78.756 193 24 8 2987 3167 304303337 304303524 4.500000e-21 113.0
44 TraesCS3D01G003900 chr6A 84.409 186 26 3 5306 5489 543530255 543530071 4.370000e-41 180.0
45 TraesCS3D01G003900 chr6A 78.390 236 27 13 2954 3168 152890417 152890185 1.240000e-26 132.0
46 TraesCS3D01G003900 chr5B 83.684 190 28 3 5306 5493 653307418 653307606 5.660000e-40 176.0
47 TraesCS3D01G003900 chr5B 82.781 151 18 8 2400 2545 37405884 37405737 1.610000e-25 128.0
48 TraesCS3D01G003900 chr5B 75.000 272 53 7 2909 3168 594264338 594264070 1.620000e-20 111.0
49 TraesCS3D01G003900 chr2A 79.793 193 21 9 2987 3167 374071689 374071503 2.080000e-24 124.0
50 TraesCS3D01G003900 chr2A 85.882 85 9 3 2379 2460 421250505 421250421 2.730000e-13 87.9
51 TraesCS3D01G003900 chr2A 77.241 145 25 7 2408 2546 724421549 724421407 1.640000e-10 78.7
52 TraesCS3D01G003900 chr2D 79.381 194 21 10 2987 3167 532705971 532705784 9.670000e-23 119.0
53 TraesCS3D01G003900 chr2D 77.320 194 24 11 2987 3167 211374903 211375089 4.530000e-16 97.1
54 TraesCS3D01G003900 chr4A 78.756 193 24 8 2987 3167 202596154 202595967 4.500000e-21 113.0
55 TraesCS3D01G003900 chr4A 80.503 159 22 7 2394 2545 732072339 732072183 4.500000e-21 113.0
56 TraesCS3D01G003900 chr1D 78.571 168 24 12 2380 2539 240665902 240666065 3.500000e-17 100.0
57 TraesCS3D01G003900 chr1D 77.202 193 26 9 2987 3167 139682508 139682322 4.530000e-16 97.1
58 TraesCS3D01G003900 chr7D 74.340 265 53 10 2379 2634 42944827 42945085 1.260000e-16 99.0
59 TraesCS3D01G003900 chr7D 94.286 35 2 0 2380 2414 140861618 140861652 3.000000e-03 54.7
60 TraesCS3D01G003900 chr1A 97.143 35 1 0 2242 2276 59778736 59778770 5.940000e-05 60.2
61 TraesCS3D01G003900 chr7B 100.000 30 0 0 2247 2276 92319423 92319452 7.690000e-04 56.5
62 TraesCS3D01G003900 chr4B 100.000 28 0 0 2249 2276 22846393 22846420 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G003900 chr3D 1654945 1660437 5492 False 10144.00 10144 100.00000 1 5493 1 chr3D.!!$F2 5492
1 TraesCS3D01G003900 chr3B 3803287 3807590 4303 False 2208.00 3171 90.73650 891 5304 2 chr3B.!!$F2 4413
2 TraesCS3D01G003900 chr3B 4701766 4706070 4304 False 2189.00 3149 90.51000 891 5304 2 chr3B.!!$F4 4413
3 TraesCS3D01G003900 chr3A 7310469 7315066 4597 True 1234.25 2191 89.36300 977 5305 4 chr3A.!!$R2 4328
4 TraesCS3D01G003900 chr3A 7384173 7390588 6415 True 1145.25 2350 91.98175 222 5103 4 chr3A.!!$R4 4881
5 TraesCS3D01G003900 chr3A 7328651 7329235 584 True 271.00 340 85.70450 3 601 2 chr3A.!!$R3 598
6 TraesCS3D01G003900 chrUn 426377243 426378185 942 True 1062.00 1062 87.38200 891 1818 1 chrUn.!!$R1 927
7 TraesCS3D01G003900 chr2B 755591413 755592253 840 False 664.00 664 81.27200 1119 1950 1 chr2B.!!$F2 831
8 TraesCS3D01G003900 chr6D 605261 606135 874 True 643.00 643 80.64900 1092 1951 1 chr6D.!!$R1 859
9 TraesCS3D01G003900 chr6D 1488749 1489657 908 False 592.00 592 79.39600 1073 1950 1 chr6D.!!$F1 877
10 TraesCS3D01G003900 chr6B 2072176 2073146 970 False 632.00 632 79.15400 995 1950 1 chr6B.!!$F1 955
11 TraesCS3D01G003900 chr6B 5790390 5794687 4297 False 616.50 619 79.87600 1092 1950 2 chr6B.!!$F5 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 419 0.107017 CGTGGATGGATGCTTCCCTT 60.107 55.0 15.62 3.71 41.83 3.95 F
1887 6182 0.107654 GACCCGGCTACTTCTGCAAT 60.108 55.0 0.00 0.00 0.00 3.56 F
2926 9233 0.106519 AATCTAAGGCTGCCCGCAAT 60.107 50.0 16.57 1.52 41.67 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 6215 0.471617 ATCCTTGCTCCGGATCTTGG 59.528 55.0 3.57 7.72 36.56 3.61 R
3334 9659 0.165944 GGACAATCAGAACAACGCCG 59.834 55.0 0.00 0.00 0.00 6.46 R
4687 11012 1.110442 CGAGCTGATGAAGAGAGGGT 58.890 55.0 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 167 8.837389 CAGTTGATGATATTGATGTCTGATGTT 58.163 33.333 0.00 0.00 0.00 2.71
155 178 3.565516 TGTCTGATGTTTCTCGAGTTCG 58.434 45.455 13.13 0.00 41.45 3.95
161 184 1.269413 TGTTTCTCGAGTTCGTCCCAC 60.269 52.381 13.13 0.01 40.80 4.61
166 189 0.526211 TCGAGTTCGTCCCACATGAG 59.474 55.000 0.00 0.00 40.80 2.90
167 190 1.078759 CGAGTTCGTCCCACATGAGC 61.079 60.000 0.00 0.00 34.11 4.26
220 244 3.430473 GGGACATGTGGTTCCAACA 57.570 52.632 1.15 0.00 45.54 3.33
310 391 3.828451 CCACTTGTGACATTTCTCCCATT 59.172 43.478 1.89 0.00 0.00 3.16
311 392 4.321452 CCACTTGTGACATTTCTCCCATTG 60.321 45.833 1.89 0.00 0.00 2.82
317 398 0.457035 CATTTCTCCCATTGGCACCG 59.543 55.000 0.00 0.00 0.00 4.94
322 403 3.430862 CCCATTGGCACCGTCGTG 61.431 66.667 0.00 0.00 43.35 4.35
338 419 0.107017 CGTGGATGGATGCTTCCCTT 60.107 55.000 15.62 3.71 41.83 3.95
339 420 1.685148 GTGGATGGATGCTTCCCTTC 58.315 55.000 15.62 11.94 41.83 3.46
340 421 0.552848 TGGATGGATGCTTCCCTTCC 59.447 55.000 21.79 21.79 41.83 3.46
341 422 0.178978 GGATGGATGCTTCCCTTCCC 60.179 60.000 19.52 11.12 41.83 3.97
342 423 0.849417 GATGGATGCTTCCCTTCCCT 59.151 55.000 15.62 0.00 41.83 4.20
356 437 4.419921 CCCTGGCCCAACCGTACC 62.420 72.222 0.00 0.00 43.94 3.34
413 494 2.140792 ACACCCGGAAGCAGTCACT 61.141 57.895 0.73 0.00 0.00 3.41
414 495 1.374758 CACCCGGAAGCAGTCACTC 60.375 63.158 0.73 0.00 0.00 3.51
479 564 7.334921 ACACTGTCTTGTAGTAGTAGAGTCATC 59.665 40.741 0.00 0.00 0.00 2.92
502 592 5.305386 TCTGCTACCGTCTAGTATACCAGTA 59.695 44.000 0.00 0.00 0.00 2.74
519 609 3.806521 CCAGTAGCTTGCATCAGTATCAC 59.193 47.826 0.00 0.00 0.00 3.06
620 714 3.650139 TCACCGTTTACTTTGAGAGAGC 58.350 45.455 0.00 0.00 0.00 4.09
649 743 3.905678 CGGGAGGCTAGGTGCTCG 61.906 72.222 0.00 0.00 42.39 5.03
670 764 2.237526 CATGATACGAGATGACGCGAG 58.762 52.381 15.93 0.00 41.48 5.03
673 767 2.445354 ATACGAGATGACGCGAGCCG 62.445 60.000 15.93 9.72 41.48 5.52
713 807 6.567602 AAAGTTAGACCATAAGCTCCTGAT 57.432 37.500 0.00 0.00 0.00 2.90
857 951 2.165030 ACGTAACCTTCGGTATCACCTG 59.835 50.000 0.00 0.00 35.66 4.00
874 968 4.715297 TCACCTGATACTTTCTCCCCTTAC 59.285 45.833 0.00 0.00 0.00 2.34
875 969 4.038633 ACCTGATACTTTCTCCCCTTACC 58.961 47.826 0.00 0.00 0.00 2.85
897 1681 1.244816 TCTCACATCCAAGTCGTCGT 58.755 50.000 0.00 0.00 0.00 4.34
903 1687 0.526662 ATCCAAGTCGTCGTCTGGAC 59.473 55.000 12.65 0.00 42.48 4.02
1013 1806 2.033448 GTCCATGCCGTCCCACAA 59.967 61.111 0.00 0.00 0.00 3.33
1083 1885 2.684843 GCTTGGAGTTGGAGCAGCG 61.685 63.158 0.00 0.00 36.45 5.18
1261 2084 1.309499 CCGCAGGCCGTTTTATTCCA 61.309 55.000 0.00 0.00 46.14 3.53
1276 2099 1.829096 TCCAACGTGGAGGTCGTCA 60.829 57.895 0.00 0.00 42.67 4.35
1336 2159 1.269309 GCATCTCCACCTACTGCTACG 60.269 57.143 0.00 0.00 0.00 3.51
1440 2275 3.785859 ACGGTCATCGGCTGCCAT 61.786 61.111 20.29 8.57 44.45 4.40
1480 2351 4.456253 AGCGCGTCGACCAGTACG 62.456 66.667 10.58 7.53 41.92 3.67
1720 2591 3.792047 CGACGACCTACGCGACCA 61.792 66.667 15.93 0.00 46.94 4.02
1753 2630 3.452786 CCAGCTTCGCCGGAGAGA 61.453 66.667 5.05 0.00 0.00 3.10
1754 2631 2.790791 CCAGCTTCGCCGGAGAGAT 61.791 63.158 5.05 0.00 0.00 2.75
1887 6182 0.107654 GACCCGGCTACTTCTGCAAT 60.108 55.000 0.00 0.00 0.00 3.56
1901 6196 1.820519 CTGCAATTGCTCCAAAGGCTA 59.179 47.619 29.37 5.83 42.66 3.93
1902 6197 2.429610 CTGCAATTGCTCCAAAGGCTAT 59.570 45.455 29.37 0.00 42.66 2.97
1965 6267 6.200097 GCAAAGGTACCAACACAAAACAATAG 59.800 38.462 15.94 0.00 0.00 1.73
2011 6326 8.746922 TGCTGTTTCTCAATCAATTCATAAAC 57.253 30.769 0.00 0.00 0.00 2.01
2012 6327 7.814107 TGCTGTTTCTCAATCAATTCATAAACC 59.186 33.333 0.00 0.00 0.00 3.27
2014 6329 9.865321 CTGTTTCTCAATCAATTCATAAACCAT 57.135 29.630 0.00 0.00 0.00 3.55
2092 7023 2.297880 GCCCGGAAAGTTTATTGTGGTT 59.702 45.455 0.73 0.00 0.00 3.67
2101 7032 7.865889 GGAAAGTTTATTGTGGTTGTAAGAAGG 59.134 37.037 0.00 0.00 0.00 3.46
2104 7035 5.586155 TTATTGTGGTTGTAAGAAGGGGA 57.414 39.130 0.00 0.00 0.00 4.81
2147 8446 7.516198 AACAATAGAGCTTCACATTGTTTCT 57.484 32.000 16.63 3.47 44.87 2.52
2148 8447 8.621532 AACAATAGAGCTTCACATTGTTTCTA 57.378 30.769 16.63 0.07 44.87 2.10
2149 8448 8.798859 ACAATAGAGCTTCACATTGTTTCTAT 57.201 30.769 9.19 0.00 38.18 1.98
2150 8449 8.887717 ACAATAGAGCTTCACATTGTTTCTATC 58.112 33.333 9.19 0.00 38.18 2.08
2151 8450 8.886719 CAATAGAGCTTCACATTGTTTCTATCA 58.113 33.333 0.00 0.00 0.00 2.15
2152 8451 6.734104 AGAGCTTCACATTGTTTCTATCAC 57.266 37.500 0.00 0.00 0.00 3.06
2153 8452 6.471146 AGAGCTTCACATTGTTTCTATCACT 58.529 36.000 0.00 0.00 0.00 3.41
2154 8453 6.370994 AGAGCTTCACATTGTTTCTATCACTG 59.629 38.462 0.00 0.00 0.00 3.66
2158 8457 7.324616 GCTTCACATTGTTTCTATCACTGTTTC 59.675 37.037 0.00 0.00 0.00 2.78
2165 8465 8.506168 TTGTTTCTATCACTGTTTCTGTCTTT 57.494 30.769 0.00 0.00 0.00 2.52
2167 8467 8.956426 TGTTTCTATCACTGTTTCTGTCTTTTT 58.044 29.630 0.00 0.00 0.00 1.94
2235 8535 8.958119 TCTTATAGATACCTCGCAAATTGTTT 57.042 30.769 0.00 0.00 0.00 2.83
2236 8536 9.391006 TCTTATAGATACCTCGCAAATTGTTTT 57.609 29.630 0.00 0.00 0.00 2.43
2237 8537 9.438291 CTTATAGATACCTCGCAAATTGTTTTG 57.562 33.333 0.00 0.00 44.18 2.44
2238 8538 5.059404 AGATACCTCGCAAATTGTTTTGG 57.941 39.130 0.00 0.00 42.09 3.28
2239 8539 4.764823 AGATACCTCGCAAATTGTTTTGGA 59.235 37.500 0.00 0.00 42.09 3.53
2240 8540 3.810310 ACCTCGCAAATTGTTTTGGAA 57.190 38.095 0.00 0.00 42.09 3.53
2241 8541 4.335400 ACCTCGCAAATTGTTTTGGAAT 57.665 36.364 0.00 0.00 42.09 3.01
2242 8542 4.057432 ACCTCGCAAATTGTTTTGGAATG 58.943 39.130 0.00 0.00 42.09 2.67
2243 8543 3.120580 CCTCGCAAATTGTTTTGGAATGC 60.121 43.478 0.00 0.00 42.09 3.56
2244 8544 3.726607 TCGCAAATTGTTTTGGAATGCT 58.273 36.364 0.00 0.00 42.09 3.79
2245 8545 3.493877 TCGCAAATTGTTTTGGAATGCTG 59.506 39.130 0.00 0.00 42.09 4.41
2260 8560 6.084738 TGGAATGCTGTATAATACTCCCTCT 58.915 40.000 0.00 0.00 0.00 3.69
2266 8566 5.717178 GCTGTATAATACTCCCTCTGATCCA 59.283 44.000 0.00 0.00 0.00 3.41
2276 8576 4.526970 TCCCTCTGATCCAAAATAAGTGC 58.473 43.478 0.00 0.00 0.00 4.40
2278 8578 3.313526 CCTCTGATCCAAAATAAGTGCCG 59.686 47.826 0.00 0.00 0.00 5.69
2280 8580 1.400142 TGATCCAAAATAAGTGCCGCG 59.600 47.619 0.00 0.00 0.00 6.46
2284 8584 0.109319 CAAAATAAGTGCCGCGGCTT 60.109 50.000 45.79 35.22 42.51 4.35
2285 8585 0.109319 AAAATAAGTGCCGCGGCTTG 60.109 50.000 45.79 14.15 42.51 4.01
2288 8588 0.958382 ATAAGTGCCGCGGCTTGAAA 60.958 50.000 45.79 28.92 42.51 2.69
2289 8589 1.847890 TAAGTGCCGCGGCTTGAAAC 61.848 55.000 45.79 35.21 42.51 2.78
2290 8590 3.959975 GTGCCGCGGCTTGAAACA 61.960 61.111 45.79 25.39 42.51 2.83
2291 8591 3.212682 TGCCGCGGCTTGAAACAA 61.213 55.556 45.79 24.59 42.51 2.83
2292 8592 2.026879 GCCGCGGCTTGAAACAAA 59.973 55.556 41.71 0.00 38.26 2.83
2293 8593 1.590259 GCCGCGGCTTGAAACAAAA 60.590 52.632 41.71 0.00 38.26 2.44
2294 8594 0.943835 GCCGCGGCTTGAAACAAAAT 60.944 50.000 41.71 0.00 38.26 1.82
2304 8604 7.675170 GCGGCTTGAAACAAAATTAAAGTTGAA 60.675 33.333 8.12 0.00 0.00 2.69
2305 8605 7.634432 CGGCTTGAAACAAAATTAAAGTTGAAC 59.366 33.333 8.12 0.00 0.00 3.18
2358 8658 8.980481 TTTTTGGATCAGAGGGAGTATATTTC 57.020 34.615 0.00 0.00 0.00 2.17
2360 8660 7.690454 TTGGATCAGAGGGAGTATATTTCAA 57.310 36.000 0.00 0.00 0.00 2.69
2365 8665 7.308450 TCAGAGGGAGTATATTTCAATGAGG 57.692 40.000 0.00 0.00 0.00 3.86
2375 8675 8.960591 AGTATATTTCAATGAGGTTTGGTTCAG 58.039 33.333 0.00 0.00 0.00 3.02
2378 8678 4.163441 TCAATGAGGTTTGGTTCAGTGA 57.837 40.909 1.08 1.08 43.56 3.41
2384 8684 3.490348 AGGTTTGGTTCAGTGATTGGAG 58.510 45.455 0.00 0.00 0.00 3.86
2388 8688 5.278315 GGTTTGGTTCAGTGATTGGAGTAAC 60.278 44.000 0.00 0.00 0.00 2.50
2393 8693 7.402054 TGGTTCAGTGATTGGAGTAACAATAT 58.598 34.615 0.00 0.00 40.92 1.28
2394 8694 7.336679 TGGTTCAGTGATTGGAGTAACAATATG 59.663 37.037 0.00 0.00 40.92 1.78
2395 8695 7.552687 GGTTCAGTGATTGGAGTAACAATATGA 59.447 37.037 0.00 0.00 40.92 2.15
2396 8696 8.607459 GTTCAGTGATTGGAGTAACAATATGAG 58.393 37.037 0.00 0.00 40.92 2.90
2397 8697 8.078060 TCAGTGATTGGAGTAACAATATGAGA 57.922 34.615 0.00 0.00 40.92 3.27
2398 8698 8.539544 TCAGTGATTGGAGTAACAATATGAGAA 58.460 33.333 0.00 0.00 40.92 2.87
2399 8699 8.607459 CAGTGATTGGAGTAACAATATGAGAAC 58.393 37.037 0.00 0.00 40.92 3.01
2400 8700 8.543774 AGTGATTGGAGTAACAATATGAGAACT 58.456 33.333 0.00 0.00 40.92 3.01
2401 8701 9.817809 GTGATTGGAGTAACAATATGAGAACTA 57.182 33.333 0.00 0.00 40.92 2.24
2521 8823 4.389890 TGCATGTTGAAGTGAGCTTTTT 57.610 36.364 0.00 0.00 34.61 1.94
2558 8860 4.503123 GCATATTGGGGCCAATCTTTTACC 60.503 45.833 4.39 0.00 44.50 2.85
2599 8901 4.439700 GCTGAAGTGATATGCTTGCATGTT 60.440 41.667 17.26 5.60 0.00 2.71
2669 8976 9.962783 CTTTGATTCCCTGAAAATATGATCTTC 57.037 33.333 0.00 0.00 0.00 2.87
2692 8999 2.218759 GTGGCAGATATTAACGAGTGCG 59.781 50.000 0.00 0.00 44.79 5.34
2761 9068 1.702401 TGCCTGGTGGATTCAAGTGTA 59.298 47.619 0.00 0.00 34.57 2.90
2784 9091 0.614697 GCCCCAAGCATACCAAAGGT 60.615 55.000 0.00 0.00 42.97 3.50
2826 9133 1.604278 GAGAGAAACCACACACTTGGC 59.396 52.381 0.00 0.00 40.77 4.52
2852 9159 7.068226 CCTTGGAGAAAAATTCGGTATTGGTAT 59.932 37.037 0.00 0.00 34.02 2.73
2873 9180 4.063998 TGTCCACATCTCTGACATATGC 57.936 45.455 1.58 0.00 34.28 3.14
2877 9184 4.901250 TCCACATCTCTGACATATGCCTAA 59.099 41.667 1.58 0.00 0.00 2.69
2879 9186 5.642491 CCACATCTCTGACATATGCCTAATG 59.358 44.000 1.58 2.70 0.00 1.90
2915 9222 8.697846 TTTAACACGATGTCTACAATCTAAGG 57.302 34.615 0.00 0.00 0.00 2.69
2916 9223 4.683832 ACACGATGTCTACAATCTAAGGC 58.316 43.478 0.00 0.00 0.00 4.35
2917 9224 4.402793 ACACGATGTCTACAATCTAAGGCT 59.597 41.667 0.00 0.00 0.00 4.58
2918 9225 4.742167 CACGATGTCTACAATCTAAGGCTG 59.258 45.833 0.00 0.00 0.00 4.85
2919 9226 3.738282 CGATGTCTACAATCTAAGGCTGC 59.262 47.826 0.00 0.00 0.00 5.25
2920 9227 3.543680 TGTCTACAATCTAAGGCTGCC 57.456 47.619 11.65 11.65 0.00 4.85
2921 9228 2.170607 TGTCTACAATCTAAGGCTGCCC 59.829 50.000 16.57 0.00 0.00 5.36
2922 9229 1.412710 TCTACAATCTAAGGCTGCCCG 59.587 52.381 16.57 4.37 35.76 6.13
2923 9230 0.179056 TACAATCTAAGGCTGCCCGC 60.179 55.000 16.57 0.00 35.76 6.13
2924 9231 1.451927 CAATCTAAGGCTGCCCGCA 60.452 57.895 16.57 0.00 41.67 5.69
2925 9232 1.031571 CAATCTAAGGCTGCCCGCAA 61.032 55.000 16.57 0.00 41.67 4.85
2926 9233 0.106519 AATCTAAGGCTGCCCGCAAT 60.107 50.000 16.57 1.52 41.67 3.56
2927 9234 0.820891 ATCTAAGGCTGCCCGCAATG 60.821 55.000 16.57 0.22 41.67 2.82
2928 9235 2.440065 TAAGGCTGCCCGCAATGG 60.440 61.111 16.57 0.00 41.67 3.16
2937 9244 1.648720 CCCGCAATGGCAAGTATCG 59.351 57.895 0.00 0.00 41.24 2.92
2938 9245 1.095228 CCCGCAATGGCAAGTATCGT 61.095 55.000 0.00 0.00 41.24 3.73
2939 9246 1.577468 CCGCAATGGCAAGTATCGTA 58.423 50.000 0.00 0.00 41.24 3.43
2940 9247 2.143122 CCGCAATGGCAAGTATCGTAT 58.857 47.619 0.00 0.00 41.24 3.06
2941 9248 3.322369 CCGCAATGGCAAGTATCGTATA 58.678 45.455 0.00 0.00 41.24 1.47
2942 9249 3.743911 CCGCAATGGCAAGTATCGTATAA 59.256 43.478 0.00 0.00 41.24 0.98
2943 9250 4.391830 CCGCAATGGCAAGTATCGTATAAT 59.608 41.667 0.00 0.00 41.24 1.28
2944 9251 5.579119 CCGCAATGGCAAGTATCGTATAATA 59.421 40.000 0.00 0.00 41.24 0.98
2945 9252 6.091577 CCGCAATGGCAAGTATCGTATAATAA 59.908 38.462 0.00 0.00 41.24 1.40
2946 9253 7.201609 CCGCAATGGCAAGTATCGTATAATAAT 60.202 37.037 0.00 0.00 41.24 1.28
2947 9254 8.813282 CGCAATGGCAAGTATCGTATAATAATA 58.187 33.333 0.00 0.00 41.24 0.98
2990 9297 8.663025 AGAGTATGATATTGCTTTCATAATGCG 58.337 33.333 0.00 0.00 36.78 4.73
2991 9298 8.327941 AGTATGATATTGCTTTCATAATGCGT 57.672 30.769 0.00 0.00 36.78 5.24
2992 9299 9.435688 AGTATGATATTGCTTTCATAATGCGTA 57.564 29.630 0.00 0.00 36.78 4.42
2993 9300 9.694520 GTATGATATTGCTTTCATAATGCGTAG 57.305 33.333 0.00 0.00 36.78 3.51
2994 9301 7.728847 TGATATTGCTTTCATAATGCGTAGT 57.271 32.000 0.00 0.00 34.56 2.73
2995 9302 8.825667 TGATATTGCTTTCATAATGCGTAGTA 57.174 30.769 0.00 0.00 34.56 1.82
2996 9303 9.435688 TGATATTGCTTTCATAATGCGTAGTAT 57.564 29.630 0.00 0.00 34.56 2.12
2997 9304 9.907576 GATATTGCTTTCATAATGCGTAGTATC 57.092 33.333 0.00 0.00 34.56 2.24
2998 9305 7.728847 ATTGCTTTCATAATGCGTAGTATCA 57.271 32.000 0.00 0.00 34.56 2.15
2999 9306 7.728847 TTGCTTTCATAATGCGTAGTATCAT 57.271 32.000 0.00 0.00 34.56 2.45
3000 9307 8.825667 TTGCTTTCATAATGCGTAGTATCATA 57.174 30.769 0.00 0.00 34.56 2.15
3001 9308 8.825667 TGCTTTCATAATGCGTAGTATCATAA 57.174 30.769 0.00 0.00 34.56 1.90
3002 9309 8.925700 TGCTTTCATAATGCGTAGTATCATAAG 58.074 33.333 0.00 0.00 34.56 1.73
3003 9310 8.926710 GCTTTCATAATGCGTAGTATCATAAGT 58.073 33.333 0.00 0.00 28.26 2.24
3091 9398 9.690913 TCATGAGATGATACCAAATCTTTTCTT 57.309 29.630 0.00 0.00 33.26 2.52
3097 9404 9.495754 GATGATACCAAATCTTTTCTTTTCTCG 57.504 33.333 0.00 0.00 0.00 4.04
3098 9405 8.391075 TGATACCAAATCTTTTCTTTTCTCGT 57.609 30.769 0.00 0.00 0.00 4.18
3099 9406 8.846211 TGATACCAAATCTTTTCTTTTCTCGTT 58.154 29.630 0.00 0.00 0.00 3.85
3100 9407 9.678941 GATACCAAATCTTTTCTTTTCTCGTTT 57.321 29.630 0.00 0.00 0.00 3.60
3108 9415 8.850454 TCTTTTCTTTTCTCGTTTAATTGTGG 57.150 30.769 0.00 0.00 0.00 4.17
3109 9416 8.463607 TCTTTTCTTTTCTCGTTTAATTGTGGT 58.536 29.630 0.00 0.00 0.00 4.16
3110 9417 8.623310 TTTTCTTTTCTCGTTTAATTGTGGTC 57.377 30.769 0.00 0.00 0.00 4.02
3111 9418 6.928979 TCTTTTCTCGTTTAATTGTGGTCA 57.071 33.333 0.00 0.00 0.00 4.02
3112 9419 6.721321 TCTTTTCTCGTTTAATTGTGGTCAC 58.279 36.000 0.00 0.00 0.00 3.67
3113 9420 5.427036 TTTCTCGTTTAATTGTGGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
3114 9421 4.345859 TCTCGTTTAATTGTGGTCACCT 57.654 40.909 0.00 0.00 0.00 4.00
3115 9422 4.312443 TCTCGTTTAATTGTGGTCACCTC 58.688 43.478 0.00 0.00 0.00 3.85
3116 9423 4.062293 CTCGTTTAATTGTGGTCACCTCA 58.938 43.478 0.00 0.00 0.00 3.86
3117 9424 4.647611 TCGTTTAATTGTGGTCACCTCAT 58.352 39.130 0.00 0.00 0.00 2.90
3118 9425 5.795972 TCGTTTAATTGTGGTCACCTCATA 58.204 37.500 0.00 0.00 0.00 2.15
3119 9426 6.231951 TCGTTTAATTGTGGTCACCTCATAA 58.768 36.000 0.00 0.00 0.00 1.90
3120 9427 6.711194 TCGTTTAATTGTGGTCACCTCATAAA 59.289 34.615 0.00 0.38 0.00 1.40
3121 9428 7.228906 TCGTTTAATTGTGGTCACCTCATAAAA 59.771 33.333 0.00 0.00 0.00 1.52
3122 9429 7.863375 CGTTTAATTGTGGTCACCTCATAAAAA 59.137 33.333 0.00 0.00 0.00 1.94
3146 9453 9.520204 AAAATAACTAGTTTGCATGCATGATAC 57.480 29.630 30.64 21.28 0.00 2.24
3147 9454 5.505173 AACTAGTTTGCATGCATGATACC 57.495 39.130 30.64 12.74 0.00 2.73
3148 9455 3.561310 ACTAGTTTGCATGCATGATACCG 59.439 43.478 30.64 17.28 0.00 4.02
3149 9456 1.066002 AGTTTGCATGCATGATACCGC 59.934 47.619 30.64 14.03 0.00 5.68
3150 9457 1.066002 GTTTGCATGCATGATACCGCT 59.934 47.619 30.64 0.00 0.00 5.52
3151 9458 1.391577 TTGCATGCATGATACCGCTT 58.608 45.000 30.64 0.00 0.00 4.68
3152 9459 2.252976 TGCATGCATGATACCGCTTA 57.747 45.000 30.64 0.00 0.00 3.09
3153 9460 2.781923 TGCATGCATGATACCGCTTAT 58.218 42.857 30.64 0.00 0.00 1.73
3154 9461 2.485038 TGCATGCATGATACCGCTTATG 59.515 45.455 30.64 0.23 0.00 1.90
3155 9462 2.743664 GCATGCATGATACCGCTTATGA 59.256 45.455 30.64 0.00 0.00 2.15
3156 9463 3.189080 GCATGCATGATACCGCTTATGAA 59.811 43.478 30.64 0.00 0.00 2.57
3157 9464 4.320421 GCATGCATGATACCGCTTATGAAA 60.320 41.667 30.64 0.00 0.00 2.69
3158 9465 5.620654 GCATGCATGATACCGCTTATGAAAT 60.621 40.000 30.64 0.00 0.00 2.17
3159 9466 6.403527 GCATGCATGATACCGCTTATGAAATA 60.404 38.462 30.64 0.00 0.00 1.40
3160 9467 6.480524 TGCATGATACCGCTTATGAAATAC 57.519 37.500 0.00 0.00 0.00 1.89
3161 9468 6.230472 TGCATGATACCGCTTATGAAATACT 58.770 36.000 0.00 0.00 0.00 2.12
3162 9469 6.368791 TGCATGATACCGCTTATGAAATACTC 59.631 38.462 0.00 0.00 0.00 2.59
3163 9470 6.183360 GCATGATACCGCTTATGAAATACTCC 60.183 42.308 0.00 0.00 0.00 3.85
3164 9471 5.790593 TGATACCGCTTATGAAATACTCCC 58.209 41.667 0.00 0.00 0.00 4.30
3165 9472 5.305902 TGATACCGCTTATGAAATACTCCCA 59.694 40.000 0.00 0.00 0.00 4.37
3166 9473 4.706842 ACCGCTTATGAAATACTCCCAT 57.293 40.909 0.00 0.00 0.00 4.00
3167 9474 5.048846 ACCGCTTATGAAATACTCCCATT 57.951 39.130 0.00 0.00 0.00 3.16
3168 9475 4.821805 ACCGCTTATGAAATACTCCCATTG 59.178 41.667 0.00 0.00 0.00 2.82
3169 9476 4.320494 CCGCTTATGAAATACTCCCATTGC 60.320 45.833 0.00 0.00 0.00 3.56
3170 9477 4.275689 CGCTTATGAAATACTCCCATTGCA 59.724 41.667 0.00 0.00 0.00 4.08
3171 9478 5.561532 CGCTTATGAAATACTCCCATTGCAG 60.562 44.000 0.00 0.00 26.78 4.41
3172 9479 5.278660 GCTTATGAAATACTCCCATTGCAGG 60.279 44.000 0.00 0.00 26.78 4.85
3188 9495 2.965831 TGCAGGGAGCCTAAGTACATAG 59.034 50.000 0.00 0.00 44.83 2.23
3197 9504 9.032624 GGGAGCCTAAGTACATAGTATATCAAA 57.967 37.037 4.55 0.00 0.00 2.69
3249 9571 8.225603 TCTTAGTGCCAATTAATTCCATCTTC 57.774 34.615 0.00 0.00 0.00 2.87
3282 9606 1.421268 ACACATGTTCTCTTCTGCCCA 59.579 47.619 0.00 0.00 0.00 5.36
3297 9621 4.410099 TCTGCCCAAAATGAGAAATGACT 58.590 39.130 0.00 0.00 0.00 3.41
3300 9624 5.324409 TGCCCAAAATGAGAAATGACTACT 58.676 37.500 0.00 0.00 0.00 2.57
3301 9625 6.480763 TGCCCAAAATGAGAAATGACTACTA 58.519 36.000 0.00 0.00 0.00 1.82
3302 9626 6.945435 TGCCCAAAATGAGAAATGACTACTAA 59.055 34.615 0.00 0.00 0.00 2.24
3303 9627 7.615365 TGCCCAAAATGAGAAATGACTACTAAT 59.385 33.333 0.00 0.00 0.00 1.73
3313 9637 9.668497 GAGAAATGACTACTAATTAACCTTGGT 57.332 33.333 0.00 0.00 0.00 3.67
3334 9659 5.361285 TGGTATCTACTCTTCAGGAGCTTTC 59.639 44.000 0.00 0.00 45.48 2.62
3347 9672 1.938861 GCTTTCGGCGTTGTTCTGA 59.061 52.632 6.85 0.00 0.00 3.27
3351 9676 1.588674 TTCGGCGTTGTTCTGATTGT 58.411 45.000 6.85 0.00 0.00 2.71
3355 9680 2.695359 GGCGTTGTTCTGATTGTCCTA 58.305 47.619 0.00 0.00 0.00 2.94
3358 9683 3.368236 GCGTTGTTCTGATTGTCCTAGTC 59.632 47.826 0.00 0.00 0.00 2.59
3361 9686 4.193826 TGTTCTGATTGTCCTAGTCTGC 57.806 45.455 0.00 0.00 0.00 4.26
3412 9737 5.489792 AAAGGAGTATCAAGAGACAAGCA 57.510 39.130 0.00 0.00 36.25 3.91
3445 9770 8.753133 AGACAGAGTGATGAATACTATCAACAA 58.247 33.333 0.00 0.00 36.41 2.83
3455 9780 1.366111 CTATCAACAACACGGGGGCG 61.366 60.000 0.00 0.00 0.00 6.13
3502 9827 2.038557 AGAGCGTAACATTGGGTTCACT 59.961 45.455 0.00 0.00 40.96 3.41
3516 9841 2.275318 GTTCACTGTCTATGCCAGAGC 58.725 52.381 0.00 0.00 40.48 4.09
3539 9864 0.672401 GATCGAGGCGGGAACAAACA 60.672 55.000 0.00 0.00 0.00 2.83
3625 9950 2.022129 CGACGGCAAGGACACACTC 61.022 63.158 0.00 0.00 0.00 3.51
3646 9971 3.316588 TCGTGGCTGTAAAAAGATGCAAA 59.683 39.130 0.00 0.00 0.00 3.68
4129 10454 0.252103 TTCTGGAGCTCCTAACCGGT 60.252 55.000 32.28 0.00 36.82 5.28
4386 10711 2.088423 GTTGGTGTTGGAGTGTCACAA 58.912 47.619 5.62 0.00 34.27 3.33
4393 10718 1.199615 TGGAGTGTCACAACCTCACA 58.800 50.000 16.41 0.99 34.94 3.58
4429 10754 1.413445 AGCTCCATGTCATCTGAGAGC 59.587 52.381 11.44 12.04 45.50 4.09
4738 11071 5.244851 GGATGACCTGACTAGAGCATGAATA 59.755 44.000 0.00 0.00 0.00 1.75
4840 11173 8.515414 CCTACATCGATCTCATGTATAAAGACA 58.485 37.037 12.42 0.00 36.39 3.41
4843 11176 9.254133 ACATCGATCTCATGTATAAAGACAAAG 57.746 33.333 0.00 0.00 32.48 2.77
4862 11195 6.287525 ACAAAGAGAAAGCCTAGATATGAGC 58.712 40.000 0.00 0.00 0.00 4.26
4863 11196 5.482163 AAGAGAAAGCCTAGATATGAGCC 57.518 43.478 0.00 0.00 0.00 4.70
4965 11298 4.458989 ACTTGCACTATTTGGTGGTACATG 59.541 41.667 0.00 0.00 44.52 3.21
5001 11334 8.827177 TTGTCAACTACAATAAGTACTCCTTG 57.173 34.615 13.18 13.18 43.22 3.61
5026 11359 5.667466 GGACAGATTTACAAGGGACGATTA 58.333 41.667 0.00 0.00 0.00 1.75
5032 11365 9.289303 CAGATTTACAAGGGACGATTAAAAATG 57.711 33.333 0.00 0.00 0.00 2.32
5070 11403 5.998363 GGTTTGTCTCATATCCCCATAACTC 59.002 44.000 0.00 0.00 0.00 3.01
5175 11510 6.312918 GGATTAAGTATACACGCACCATATGG 59.687 42.308 20.68 20.68 42.17 2.74
5177 11512 4.521130 AGTATACACGCACCATATGGAG 57.479 45.455 28.77 21.32 38.94 3.86
5207 11542 5.707764 GGCTCAGATTTATGGGAAGGATAAC 59.292 44.000 0.00 0.00 0.00 1.89
5305 11641 6.183360 GCACAAATTGCCTACATGTTAATTGG 60.183 38.462 2.30 6.97 46.63 3.16
5306 11642 6.313411 CACAAATTGCCTACATGTTAATTGGG 59.687 38.462 2.30 5.98 0.00 4.12
5307 11643 5.612725 AATTGCCTACATGTTAATTGGGG 57.387 39.130 2.30 0.00 0.00 4.96
5308 11644 3.748645 TGCCTACATGTTAATTGGGGT 57.251 42.857 2.30 0.00 0.00 4.95
5309 11645 3.360867 TGCCTACATGTTAATTGGGGTG 58.639 45.455 2.30 0.00 0.00 4.61
5310 11646 3.245443 TGCCTACATGTTAATTGGGGTGT 60.245 43.478 2.30 0.00 0.00 4.16
5311 11647 3.130340 GCCTACATGTTAATTGGGGTGTG 59.870 47.826 2.30 0.00 0.00 3.82
5312 11648 4.340617 CCTACATGTTAATTGGGGTGTGT 58.659 43.478 2.30 0.00 0.00 3.72
5313 11649 4.770010 CCTACATGTTAATTGGGGTGTGTT 59.230 41.667 2.30 0.00 0.00 3.32
5314 11650 5.245075 CCTACATGTTAATTGGGGTGTGTTT 59.755 40.000 2.30 0.00 0.00 2.83
5315 11651 4.954875 ACATGTTAATTGGGGTGTGTTTG 58.045 39.130 0.00 0.00 0.00 2.93
5316 11652 4.202305 ACATGTTAATTGGGGTGTGTTTGG 60.202 41.667 0.00 0.00 0.00 3.28
5317 11653 3.643237 TGTTAATTGGGGTGTGTTTGGA 58.357 40.909 0.00 0.00 0.00 3.53
5318 11654 4.227197 TGTTAATTGGGGTGTGTTTGGAT 58.773 39.130 0.00 0.00 0.00 3.41
5319 11655 4.039730 TGTTAATTGGGGTGTGTTTGGATG 59.960 41.667 0.00 0.00 0.00 3.51
5320 11656 0.975887 ATTGGGGTGTGTTTGGATGC 59.024 50.000 0.00 0.00 0.00 3.91
5321 11657 0.105760 TTGGGGTGTGTTTGGATGCT 60.106 50.000 0.00 0.00 0.00 3.79
5322 11658 0.827089 TGGGGTGTGTTTGGATGCTG 60.827 55.000 0.00 0.00 0.00 4.41
5323 11659 1.290009 GGGTGTGTTTGGATGCTGC 59.710 57.895 0.00 0.00 0.00 5.25
5324 11660 1.290009 GGTGTGTTTGGATGCTGCC 59.710 57.895 0.00 0.00 0.00 4.85
5325 11661 1.290009 GTGTGTTTGGATGCTGCCC 59.710 57.895 0.00 0.00 0.00 5.36
5326 11662 1.152589 TGTGTTTGGATGCTGCCCA 60.153 52.632 0.00 0.00 0.00 5.36
5327 11663 0.758310 TGTGTTTGGATGCTGCCCAA 60.758 50.000 6.31 6.31 41.53 4.12
5328 11664 0.037975 GTGTTTGGATGCTGCCCAAG 60.038 55.000 9.74 0.00 43.72 3.61
5337 11673 3.837578 CTGCCCAAGCTAGCCATG 58.162 61.111 12.13 11.12 40.80 3.66
5338 11674 2.440796 TGCCCAAGCTAGCCATGC 60.441 61.111 12.13 10.02 40.80 4.06
5339 11675 3.222121 GCCCAAGCTAGCCATGCC 61.222 66.667 12.13 1.62 35.50 4.40
5340 11676 2.276409 CCCAAGCTAGCCATGCCA 59.724 61.111 12.13 0.00 0.00 4.92
5341 11677 1.380246 CCCAAGCTAGCCATGCCAA 60.380 57.895 12.13 0.00 0.00 4.52
5342 11678 1.669999 CCCAAGCTAGCCATGCCAAC 61.670 60.000 12.13 0.00 0.00 3.77
5343 11679 1.669999 CCAAGCTAGCCATGCCAACC 61.670 60.000 12.13 0.00 0.00 3.77
5344 11680 1.750399 AAGCTAGCCATGCCAACCG 60.750 57.895 12.13 0.00 0.00 4.44
5345 11681 2.438434 GCTAGCCATGCCAACCGT 60.438 61.111 2.29 0.00 0.00 4.83
5346 11682 2.764314 GCTAGCCATGCCAACCGTG 61.764 63.158 2.29 0.00 0.00 4.94
5359 11695 3.905678 CCGTGGGCGTGCCAAAAA 61.906 61.111 13.76 0.00 37.98 1.94
5384 11720 3.813596 CAGTATTCTGCCGCCCAC 58.186 61.111 0.00 0.00 34.79 4.61
5385 11721 1.078497 CAGTATTCTGCCGCCCACA 60.078 57.895 0.00 0.00 34.79 4.17
5386 11722 0.676466 CAGTATTCTGCCGCCCACAA 60.676 55.000 0.00 0.00 34.79 3.33
5387 11723 0.676782 AGTATTCTGCCGCCCACAAC 60.677 55.000 0.00 0.00 0.00 3.32
5388 11724 0.676782 GTATTCTGCCGCCCACAACT 60.677 55.000 0.00 0.00 0.00 3.16
5389 11725 0.037590 TATTCTGCCGCCCACAACTT 59.962 50.000 0.00 0.00 0.00 2.66
5390 11726 1.526575 ATTCTGCCGCCCACAACTTG 61.527 55.000 0.00 0.00 0.00 3.16
5391 11727 4.347453 CTGCCGCCCACAACTTGC 62.347 66.667 0.00 0.00 0.00 4.01
5397 11733 3.222855 CCCACAACTTGCCCGCAA 61.223 61.111 1.58 1.58 0.00 4.85
5415 11751 3.860672 GCAAGTTGGCGAAAAATTGAAC 58.139 40.909 12.85 0.00 37.31 3.18
5416 11752 3.555547 GCAAGTTGGCGAAAAATTGAACT 59.444 39.130 12.85 0.00 37.31 3.01
5417 11753 4.550639 GCAAGTTGGCGAAAAATTGAACTG 60.551 41.667 12.85 0.00 37.31 3.16
5418 11754 3.716601 AGTTGGCGAAAAATTGAACTGG 58.283 40.909 0.00 0.00 0.00 4.00
5419 11755 2.799978 GTTGGCGAAAAATTGAACTGGG 59.200 45.455 0.00 0.00 0.00 4.45
5420 11756 1.342819 TGGCGAAAAATTGAACTGGGG 59.657 47.619 0.00 0.00 0.00 4.96
5421 11757 1.616374 GGCGAAAAATTGAACTGGGGA 59.384 47.619 0.00 0.00 0.00 4.81
5422 11758 2.352715 GGCGAAAAATTGAACTGGGGAG 60.353 50.000 0.00 0.00 0.00 4.30
5423 11759 2.352715 GCGAAAAATTGAACTGGGGAGG 60.353 50.000 0.00 0.00 0.00 4.30
5424 11760 2.352715 CGAAAAATTGAACTGGGGAGGC 60.353 50.000 0.00 0.00 0.00 4.70
5425 11761 2.702270 AAAATTGAACTGGGGAGGCT 57.298 45.000 0.00 0.00 0.00 4.58
5426 11762 3.825908 AAAATTGAACTGGGGAGGCTA 57.174 42.857 0.00 0.00 0.00 3.93
5427 11763 3.825908 AAATTGAACTGGGGAGGCTAA 57.174 42.857 0.00 0.00 0.00 3.09
5428 11764 3.372440 AATTGAACTGGGGAGGCTAAG 57.628 47.619 0.00 0.00 0.00 2.18
5429 11765 0.991920 TTGAACTGGGGAGGCTAAGG 59.008 55.000 0.00 0.00 0.00 2.69
5430 11766 1.224870 GAACTGGGGAGGCTAAGGC 59.775 63.158 0.00 0.00 37.82 4.35
5431 11767 1.541368 AACTGGGGAGGCTAAGGCA 60.541 57.895 0.00 0.00 40.87 4.75
5432 11768 1.566298 AACTGGGGAGGCTAAGGCAG 61.566 60.000 0.00 0.00 40.87 4.85
5449 11785 3.376546 GCCAGGGCGAACCAATTT 58.623 55.556 0.00 0.00 43.89 1.82
5450 11786 2.573920 GCCAGGGCGAACCAATTTA 58.426 52.632 0.00 0.00 43.89 1.40
5451 11787 1.111277 GCCAGGGCGAACCAATTTAT 58.889 50.000 0.00 0.00 43.89 1.40
5452 11788 1.480545 GCCAGGGCGAACCAATTTATT 59.519 47.619 0.00 0.00 43.89 1.40
5453 11789 2.738321 GCCAGGGCGAACCAATTTATTG 60.738 50.000 0.00 0.00 43.89 1.90
5472 11808 3.071495 GTCATCAACCAAACACGCG 57.929 52.632 3.53 3.53 0.00 6.01
5473 11809 0.996727 GTCATCAACCAAACACGCGC 60.997 55.000 5.73 0.00 0.00 6.86
5474 11810 1.729131 CATCAACCAAACACGCGCC 60.729 57.895 5.73 0.00 0.00 6.53
5475 11811 2.914908 ATCAACCAAACACGCGCCC 61.915 57.895 5.73 0.00 0.00 6.13
5476 11812 3.893763 CAACCAAACACGCGCCCA 61.894 61.111 5.73 0.00 0.00 5.36
5477 11813 3.894947 AACCAAACACGCGCCCAC 61.895 61.111 5.73 0.00 0.00 4.61
5490 11826 4.308458 CCCACGCCTGGTCAACGA 62.308 66.667 0.86 0.00 35.46 3.85
5491 11827 3.041940 CCACGCCTGGTCAACGAC 61.042 66.667 0.00 0.00 32.03 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 152 5.728471 ACTCGAGAAACATCAGACATCAAT 58.272 37.500 21.68 0.00 0.00 2.57
130 153 5.139435 ACTCGAGAAACATCAGACATCAA 57.861 39.130 21.68 0.00 0.00 2.57
144 167 1.067846 CATGTGGGACGAACTCGAGAA 60.068 52.381 21.68 0.00 43.02 2.87
155 178 0.392193 CCAGTCTGCTCATGTGGGAC 60.392 60.000 0.00 0.00 0.00 4.46
161 184 2.082231 CCAGTTTCCAGTCTGCTCATG 58.918 52.381 0.00 0.00 0.00 3.07
166 189 1.802069 GTCTCCAGTTTCCAGTCTGC 58.198 55.000 0.00 0.00 0.00 4.26
167 190 1.337260 CCGTCTCCAGTTTCCAGTCTG 60.337 57.143 0.00 0.00 0.00 3.51
188 211 0.251877 TGTCCCCTCACCATCGTGTA 60.252 55.000 0.00 0.00 41.09 2.90
193 217 0.107017 CCACATGTCCCCTCACCATC 60.107 60.000 0.00 0.00 0.00 3.51
197 221 0.322546 GGAACCACATGTCCCCTCAC 60.323 60.000 0.00 0.00 0.00 3.51
201 225 0.178975 TGTTGGAACCACATGTCCCC 60.179 55.000 0.00 0.00 0.00 4.81
202 226 1.545582 CATGTTGGAACCACATGTCCC 59.454 52.381 18.75 0.00 37.17 4.46
290 314 3.828451 CCAATGGGAGAAATGTCACAAGT 59.172 43.478 0.00 0.00 32.25 3.16
310 391 4.386951 CCATCCACGACGGTGCCA 62.387 66.667 0.00 0.00 43.00 4.92
311 392 3.385749 ATCCATCCACGACGGTGCC 62.386 63.158 0.00 0.00 43.00 5.01
317 398 2.695314 GGAAGCATCCATCCACGAC 58.305 57.895 2.32 0.00 45.79 4.34
338 419 3.324108 GTACGGTTGGGCCAGGGA 61.324 66.667 6.23 0.00 36.97 4.20
339 420 4.419921 GGTACGGTTGGGCCAGGG 62.420 72.222 6.23 2.35 36.97 4.45
413 494 0.249120 CTGGCCATGGAAGTACGTGA 59.751 55.000 18.40 0.00 0.00 4.35
414 495 1.369091 GCTGGCCATGGAAGTACGTG 61.369 60.000 18.40 0.00 0.00 4.49
479 564 4.387598 ACTGGTATACTAGACGGTAGCAG 58.612 47.826 21.77 17.45 44.15 4.24
519 609 4.467769 ACATCAAGGCCTGAATATTCCAG 58.532 43.478 5.69 9.75 37.67 3.86
649 743 0.705094 CGCGTCATCTCGTATCATGC 59.295 55.000 0.00 0.00 0.00 4.06
670 764 1.750193 TGGATTTCAGATCCAACGGC 58.250 50.000 5.31 0.00 44.54 5.68
799 893 3.976793 TGATATTAGACGACGTGGGTC 57.023 47.619 4.58 5.38 39.89 4.46
857 951 6.156429 TGAGAAAGGTAAGGGGAGAAAGTATC 59.844 42.308 0.00 0.00 0.00 2.24
874 968 2.996621 GACGACTTGGATGTGAGAAAGG 59.003 50.000 0.00 0.00 0.00 3.11
875 969 2.663602 CGACGACTTGGATGTGAGAAAG 59.336 50.000 0.00 0.00 0.00 2.62
897 1681 6.844388 AGTATTATGTAATGACCCAGTCCAGA 59.156 38.462 0.00 0.00 0.00 3.86
932 1719 0.321671 TGCTCTGGGTACTGAGTTGC 59.678 55.000 0.00 8.24 42.66 4.17
991 1784 4.832608 GGACGGCATGGACGGGTC 62.833 72.222 0.00 0.00 39.02 4.46
1057 1859 2.670934 AACTCCAAGCAGCGCCAG 60.671 61.111 2.29 0.00 0.00 4.85
1259 2082 1.372997 CTGACGACCTCCACGTTGG 60.373 63.158 0.00 0.00 43.97 3.77
1261 2084 2.338984 GCTGACGACCTCCACGTT 59.661 61.111 0.00 0.00 43.97 3.99
1336 2159 4.324991 GTCCCGGGTGGTGGTGTC 62.325 72.222 22.86 0.00 34.77 3.67
1469 2340 2.683859 CCACTCGCGTACTGGTCGA 61.684 63.158 5.77 0.00 0.00 4.20
1720 2591 2.281692 GGTGTTAAACCCCGGCGT 60.282 61.111 6.01 0.00 44.02 5.68
1887 6182 2.726821 CCTTGATAGCCTTTGGAGCAA 58.273 47.619 0.00 0.00 0.00 3.91
1920 6215 0.471617 ATCCTTGCTCCGGATCTTGG 59.528 55.000 3.57 7.72 36.56 3.61
1988 6296 9.865321 ATGGTTTATGAATTGATTGAGAAACAG 57.135 29.630 12.86 0.00 37.01 3.16
2011 6326 9.923143 ACATGAATCATTGCATAGATTTTATGG 57.077 29.630 24.06 14.14 35.60 2.74
2073 7004 4.577834 ACAACCACAATAAACTTTCCGG 57.422 40.909 0.00 0.00 0.00 5.14
2092 7023 7.664318 GTGAAGAAATAGTTTCCCCTTCTTACA 59.336 37.037 0.00 0.00 40.54 2.41
2125 8424 8.886719 TGATAGAAACAATGTGAAGCTCTATTG 58.113 33.333 9.35 9.35 36.77 1.90
2137 8436 7.716998 AGACAGAAACAGTGATAGAAACAATGT 59.283 33.333 0.00 0.00 45.90 2.71
2139 8438 8.682936 AAGACAGAAACAGTGATAGAAACAAT 57.317 30.769 0.00 0.00 0.00 2.71
2222 8522 3.742369 AGCATTCCAAAACAATTTGCGAG 59.258 39.130 0.00 0.00 43.73 5.03
2235 8535 6.558775 AGAGGGAGTATTATACAGCATTCCAA 59.441 38.462 5.11 0.00 0.00 3.53
2236 8536 6.014242 CAGAGGGAGTATTATACAGCATTCCA 60.014 42.308 5.11 0.00 0.00 3.53
2237 8537 6.211584 TCAGAGGGAGTATTATACAGCATTCC 59.788 42.308 5.11 2.56 0.00 3.01
2238 8538 7.233389 TCAGAGGGAGTATTATACAGCATTC 57.767 40.000 5.11 0.00 0.00 2.67
2239 8539 7.093112 GGATCAGAGGGAGTATTATACAGCATT 60.093 40.741 5.11 0.00 0.00 3.56
2240 8540 6.382570 GGATCAGAGGGAGTATTATACAGCAT 59.617 42.308 5.11 0.00 0.00 3.79
2241 8541 5.717178 GGATCAGAGGGAGTATTATACAGCA 59.283 44.000 5.11 0.00 0.00 4.41
2242 8542 5.717178 TGGATCAGAGGGAGTATTATACAGC 59.283 44.000 5.11 0.00 0.00 4.40
2243 8543 7.782897 TTGGATCAGAGGGAGTATTATACAG 57.217 40.000 5.11 0.00 0.00 2.74
2244 8544 8.561536 TTTTGGATCAGAGGGAGTATTATACA 57.438 34.615 5.11 0.00 0.00 2.29
2254 8554 4.526970 GCACTTATTTTGGATCAGAGGGA 58.473 43.478 0.00 0.00 0.00 4.20
2255 8555 3.633986 GGCACTTATTTTGGATCAGAGGG 59.366 47.826 0.00 0.00 0.00 4.30
2260 8560 1.400142 CGCGGCACTTATTTTGGATCA 59.600 47.619 0.00 0.00 0.00 2.92
2276 8576 1.496934 AATTTTGTTTCAAGCCGCGG 58.503 45.000 24.05 24.05 0.00 6.46
2278 8578 5.651172 ACTTTAATTTTGTTTCAAGCCGC 57.349 34.783 0.00 0.00 0.00 6.53
2280 8580 8.664798 AGTTCAACTTTAATTTTGTTTCAAGCC 58.335 29.630 0.00 0.00 0.00 4.35
2304 8604 8.886719 GTGTCACAACTTTAAACTAAGGTTAGT 58.113 33.333 0.00 0.00 45.43 2.24
2305 8605 9.106070 AGTGTCACAACTTTAAACTAAGGTTAG 57.894 33.333 5.62 0.00 36.05 2.34
2336 8636 7.690454 TTGAAATATACTCCCTCTGATCCAA 57.310 36.000 0.00 0.00 0.00 3.53
2337 8637 7.513781 TCATTGAAATATACTCCCTCTGATCCA 59.486 37.037 0.00 0.00 0.00 3.41
2338 8638 7.911651 TCATTGAAATATACTCCCTCTGATCC 58.088 38.462 0.00 0.00 0.00 3.36
2339 8639 8.040132 CCTCATTGAAATATACTCCCTCTGATC 58.960 40.741 0.00 0.00 0.00 2.92
2340 8640 7.515514 ACCTCATTGAAATATACTCCCTCTGAT 59.484 37.037 0.00 0.00 0.00 2.90
2341 8641 6.846505 ACCTCATTGAAATATACTCCCTCTGA 59.153 38.462 0.00 0.00 0.00 3.27
2342 8642 7.072263 ACCTCATTGAAATATACTCCCTCTG 57.928 40.000 0.00 0.00 0.00 3.35
2343 8643 7.698163 AACCTCATTGAAATATACTCCCTCT 57.302 36.000 0.00 0.00 0.00 3.69
2358 8658 5.224888 CAATCACTGAACCAAACCTCATTG 58.775 41.667 0.00 0.00 0.00 2.82
2360 8660 3.828451 CCAATCACTGAACCAAACCTCAT 59.172 43.478 0.00 0.00 0.00 2.90
2365 8665 5.298276 TGTTACTCCAATCACTGAACCAAAC 59.702 40.000 0.00 0.00 0.00 2.93
2375 8675 8.723942 AGTTCTCATATTGTTACTCCAATCAC 57.276 34.615 0.00 0.00 36.48 3.06
2546 8848 9.734620 CAACATACATACATGGTAAAAGATTGG 57.265 33.333 0.00 0.00 0.00 3.16
2558 8860 5.427036 TCAGCATGCAACATACATACATG 57.573 39.130 21.98 4.36 40.80 3.21
2632 8939 8.511604 TTCAGGGAATCAAAGATCAAATACTC 57.488 34.615 0.00 0.00 0.00 2.59
2669 8976 2.794910 CACTCGTTAATATCTGCCACCG 59.205 50.000 0.00 0.00 0.00 4.94
2692 8999 0.817654 GGGTATTTTGCCAGGTCTGC 59.182 55.000 0.00 0.00 0.00 4.26
2826 9133 5.185056 ACCAATACCGAATTTTTCTCCAAGG 59.815 40.000 0.00 0.00 0.00 3.61
2852 9159 3.181462 GGCATATGTCAGAGATGTGGACA 60.181 47.826 1.45 0.00 44.73 4.02
2889 9196 9.146984 CCTTAGATTGTAGACATCGTGTTAAAA 57.853 33.333 0.00 0.00 0.00 1.52
2890 9197 7.277098 GCCTTAGATTGTAGACATCGTGTTAAA 59.723 37.037 0.00 0.00 0.00 1.52
2891 9198 6.755141 GCCTTAGATTGTAGACATCGTGTTAA 59.245 38.462 0.00 0.00 0.00 2.01
2892 9199 6.096423 AGCCTTAGATTGTAGACATCGTGTTA 59.904 38.462 0.00 0.00 0.00 2.41
2893 9200 5.105310 AGCCTTAGATTGTAGACATCGTGTT 60.105 40.000 0.00 0.00 0.00 3.32
2894 9201 4.402793 AGCCTTAGATTGTAGACATCGTGT 59.597 41.667 0.00 0.00 0.00 4.49
2895 9202 4.742167 CAGCCTTAGATTGTAGACATCGTG 59.258 45.833 0.00 0.00 0.00 4.35
2896 9203 4.737946 GCAGCCTTAGATTGTAGACATCGT 60.738 45.833 0.00 0.00 0.00 3.73
2897 9204 3.738282 GCAGCCTTAGATTGTAGACATCG 59.262 47.826 0.00 0.00 0.00 3.84
2898 9205 4.061596 GGCAGCCTTAGATTGTAGACATC 58.938 47.826 3.29 0.00 0.00 3.06
2899 9206 3.181450 GGGCAGCCTTAGATTGTAGACAT 60.181 47.826 12.43 0.00 0.00 3.06
2900 9207 2.170607 GGGCAGCCTTAGATTGTAGACA 59.829 50.000 12.43 0.00 0.00 3.41
2901 9208 2.803492 CGGGCAGCCTTAGATTGTAGAC 60.803 54.545 12.43 0.00 0.00 2.59
2902 9209 1.412710 CGGGCAGCCTTAGATTGTAGA 59.587 52.381 12.43 0.00 0.00 2.59
2903 9210 1.871080 CGGGCAGCCTTAGATTGTAG 58.129 55.000 12.43 0.00 0.00 2.74
2904 9211 0.179056 GCGGGCAGCCTTAGATTGTA 60.179 55.000 12.43 0.00 40.81 2.41
2905 9212 1.452108 GCGGGCAGCCTTAGATTGT 60.452 57.895 12.43 0.00 40.81 2.71
2906 9213 3.425422 GCGGGCAGCCTTAGATTG 58.575 61.111 12.43 0.00 40.81 2.67
2919 9226 1.095228 ACGATACTTGCCATTGCGGG 61.095 55.000 0.00 0.00 41.78 6.13
2920 9227 1.577468 TACGATACTTGCCATTGCGG 58.423 50.000 0.00 0.00 41.78 5.69
2921 9228 4.983215 TTATACGATACTTGCCATTGCG 57.017 40.909 0.00 0.00 41.78 4.85
2964 9271 8.663025 CGCATTATGAAAGCAATATCATACTCT 58.337 33.333 0.00 0.00 38.04 3.24
2965 9272 8.446273 ACGCATTATGAAAGCAATATCATACTC 58.554 33.333 0.00 0.00 38.04 2.59
2966 9273 8.327941 ACGCATTATGAAAGCAATATCATACT 57.672 30.769 0.00 0.00 38.04 2.12
2967 9274 9.694520 CTACGCATTATGAAAGCAATATCATAC 57.305 33.333 0.00 0.00 38.04 2.39
2968 9275 9.435688 ACTACGCATTATGAAAGCAATATCATA 57.564 29.630 0.00 0.00 37.46 2.15
2969 9276 8.327941 ACTACGCATTATGAAAGCAATATCAT 57.672 30.769 0.00 0.00 39.50 2.45
2970 9277 7.728847 ACTACGCATTATGAAAGCAATATCA 57.271 32.000 0.00 0.00 0.00 2.15
2971 9278 9.907576 GATACTACGCATTATGAAAGCAATATC 57.092 33.333 0.00 0.00 0.00 1.63
2972 9279 9.435688 TGATACTACGCATTATGAAAGCAATAT 57.564 29.630 0.00 0.00 0.00 1.28
2973 9280 8.825667 TGATACTACGCATTATGAAAGCAATA 57.174 30.769 0.00 0.00 0.00 1.90
2974 9281 7.728847 TGATACTACGCATTATGAAAGCAAT 57.271 32.000 0.00 0.00 0.00 3.56
2975 9282 7.728847 ATGATACTACGCATTATGAAAGCAA 57.271 32.000 0.00 0.00 0.00 3.91
2976 9283 8.825667 TTATGATACTACGCATTATGAAAGCA 57.174 30.769 0.00 0.00 0.00 3.91
2977 9284 8.926710 ACTTATGATACTACGCATTATGAAAGC 58.073 33.333 0.00 0.00 0.00 3.51
3065 9372 9.690913 AAGAAAAGATTTGGTATCATCTCATGA 57.309 29.630 0.00 0.00 44.55 3.07
3071 9378 9.495754 CGAGAAAAGAAAAGATTTGGTATCATC 57.504 33.333 0.00 0.00 0.00 2.92
3072 9379 9.014297 ACGAGAAAAGAAAAGATTTGGTATCAT 57.986 29.630 0.00 0.00 0.00 2.45
3073 9380 8.391075 ACGAGAAAAGAAAAGATTTGGTATCA 57.609 30.769 0.00 0.00 0.00 2.15
3074 9381 9.678941 AAACGAGAAAAGAAAAGATTTGGTATC 57.321 29.630 0.00 0.00 0.00 2.24
3082 9389 9.463443 CCACAATTAAACGAGAAAAGAAAAGAT 57.537 29.630 0.00 0.00 0.00 2.40
3083 9390 8.463607 ACCACAATTAAACGAGAAAAGAAAAGA 58.536 29.630 0.00 0.00 0.00 2.52
3084 9391 8.628882 ACCACAATTAAACGAGAAAAGAAAAG 57.371 30.769 0.00 0.00 0.00 2.27
3085 9392 8.244802 TGACCACAATTAAACGAGAAAAGAAAA 58.755 29.630 0.00 0.00 0.00 2.29
3086 9393 7.698970 GTGACCACAATTAAACGAGAAAAGAAA 59.301 33.333 0.00 0.00 0.00 2.52
3087 9394 7.190871 GTGACCACAATTAAACGAGAAAAGAA 58.809 34.615 0.00 0.00 0.00 2.52
3088 9395 6.238538 GGTGACCACAATTAAACGAGAAAAGA 60.239 38.462 0.00 0.00 0.00 2.52
3089 9396 5.912955 GGTGACCACAATTAAACGAGAAAAG 59.087 40.000 0.00 0.00 0.00 2.27
3090 9397 5.591067 AGGTGACCACAATTAAACGAGAAAA 59.409 36.000 3.63 0.00 0.00 2.29
3091 9398 5.127491 AGGTGACCACAATTAAACGAGAAA 58.873 37.500 3.63 0.00 0.00 2.52
3092 9399 4.710324 AGGTGACCACAATTAAACGAGAA 58.290 39.130 3.63 0.00 0.00 2.87
3093 9400 4.202274 TGAGGTGACCACAATTAAACGAGA 60.202 41.667 3.63 0.00 0.00 4.04
3094 9401 4.062293 TGAGGTGACCACAATTAAACGAG 58.938 43.478 3.63 0.00 0.00 4.18
3095 9402 4.074627 TGAGGTGACCACAATTAAACGA 57.925 40.909 3.63 0.00 0.00 3.85
3096 9403 6.489127 TTATGAGGTGACCACAATTAAACG 57.511 37.500 5.71 0.00 0.00 3.60
3120 9427 9.520204 GTATCATGCATGCAAACTAGTTATTTT 57.480 29.630 26.68 0.00 0.00 1.82
3121 9428 8.137437 GGTATCATGCATGCAAACTAGTTATTT 58.863 33.333 26.68 0.00 0.00 1.40
3122 9429 7.520453 CGGTATCATGCATGCAAACTAGTTATT 60.520 37.037 26.68 0.00 0.00 1.40
3123 9430 6.073058 CGGTATCATGCATGCAAACTAGTTAT 60.073 38.462 26.68 6.55 0.00 1.89
3124 9431 5.236263 CGGTATCATGCATGCAAACTAGTTA 59.764 40.000 26.68 8.88 0.00 2.24
3125 9432 4.035558 CGGTATCATGCATGCAAACTAGTT 59.964 41.667 26.68 1.12 0.00 2.24
3126 9433 3.561310 CGGTATCATGCATGCAAACTAGT 59.439 43.478 26.68 3.45 0.00 2.57
3127 9434 3.607775 GCGGTATCATGCATGCAAACTAG 60.608 47.826 26.68 17.14 0.00 2.57
3128 9435 2.290367 GCGGTATCATGCATGCAAACTA 59.710 45.455 26.68 12.98 0.00 2.24
3129 9436 1.066002 GCGGTATCATGCATGCAAACT 59.934 47.619 26.68 14.03 0.00 2.66
3130 9437 1.066002 AGCGGTATCATGCATGCAAAC 59.934 47.619 26.68 18.96 0.00 2.93
3131 9438 1.391577 AGCGGTATCATGCATGCAAA 58.608 45.000 26.68 16.55 0.00 3.68
3132 9439 1.391577 AAGCGGTATCATGCATGCAA 58.608 45.000 26.68 9.94 0.00 4.08
3133 9440 2.252976 TAAGCGGTATCATGCATGCA 57.747 45.000 25.04 25.04 0.00 3.96
3134 9441 2.743664 TCATAAGCGGTATCATGCATGC 59.256 45.455 22.25 11.82 0.00 4.06
3135 9442 5.361135 TTTCATAAGCGGTATCATGCATG 57.639 39.130 21.07 21.07 0.00 4.06
3136 9443 6.881065 AGTATTTCATAAGCGGTATCATGCAT 59.119 34.615 0.00 0.00 0.00 3.96
3137 9444 6.230472 AGTATTTCATAAGCGGTATCATGCA 58.770 36.000 0.00 0.00 0.00 3.96
3138 9445 6.183360 GGAGTATTTCATAAGCGGTATCATGC 60.183 42.308 0.00 0.00 0.00 4.06
3139 9446 6.313905 GGGAGTATTTCATAAGCGGTATCATG 59.686 42.308 0.00 0.00 0.00 3.07
3140 9447 6.013725 TGGGAGTATTTCATAAGCGGTATCAT 60.014 38.462 0.00 0.00 0.00 2.45
3141 9448 5.305902 TGGGAGTATTTCATAAGCGGTATCA 59.694 40.000 0.00 0.00 0.00 2.15
3142 9449 5.790593 TGGGAGTATTTCATAAGCGGTATC 58.209 41.667 0.00 0.00 0.00 2.24
3143 9450 5.818678 TGGGAGTATTTCATAAGCGGTAT 57.181 39.130 0.00 0.00 0.00 2.73
3144 9451 5.818678 ATGGGAGTATTTCATAAGCGGTA 57.181 39.130 0.00 0.00 0.00 4.02
3145 9452 4.706842 ATGGGAGTATTTCATAAGCGGT 57.293 40.909 0.00 0.00 0.00 5.68
3146 9453 4.320494 GCAATGGGAGTATTTCATAAGCGG 60.320 45.833 0.00 0.00 0.00 5.52
3147 9454 4.275689 TGCAATGGGAGTATTTCATAAGCG 59.724 41.667 0.00 0.00 0.00 4.68
3148 9455 5.278660 CCTGCAATGGGAGTATTTCATAAGC 60.279 44.000 0.00 0.00 0.00 3.09
3149 9456 6.323203 CCTGCAATGGGAGTATTTCATAAG 57.677 41.667 0.00 0.00 0.00 1.73
3163 9470 0.257039 ACTTAGGCTCCCTGCAATGG 59.743 55.000 0.00 0.00 45.15 3.16
3164 9471 2.092968 TGTACTTAGGCTCCCTGCAATG 60.093 50.000 0.00 0.00 45.15 2.82
3165 9472 2.196595 TGTACTTAGGCTCCCTGCAAT 58.803 47.619 0.00 0.00 45.15 3.56
3166 9473 1.651737 TGTACTTAGGCTCCCTGCAA 58.348 50.000 0.00 0.00 45.15 4.08
3167 9474 1.879575 ATGTACTTAGGCTCCCTGCA 58.120 50.000 0.00 0.00 45.15 4.41
3168 9475 2.966516 ACTATGTACTTAGGCTCCCTGC 59.033 50.000 17.43 0.00 41.94 4.85
3169 9476 7.834681 TGATATACTATGTACTTAGGCTCCCTG 59.165 40.741 17.43 0.00 34.61 4.45
3170 9477 7.940878 TGATATACTATGTACTTAGGCTCCCT 58.059 38.462 17.43 1.50 37.71 4.20
3171 9478 8.591114 TTGATATACTATGTACTTAGGCTCCC 57.409 38.462 17.43 6.72 0.00 4.30
3205 9516 9.653287 CACTAAGATGAATTAAACACTGGTCTA 57.347 33.333 0.00 0.00 0.00 2.59
3209 9520 6.150976 TGGCACTAAGATGAATTAAACACTGG 59.849 38.462 0.00 0.00 0.00 4.00
3218 9529 8.980596 TGGAATTAATTGGCACTAAGATGAATT 58.019 29.630 5.17 0.00 0.00 2.17
3219 9530 8.537728 TGGAATTAATTGGCACTAAGATGAAT 57.462 30.769 5.17 0.00 0.00 2.57
3276 9600 4.796038 AGTCATTTCTCATTTTGGGCAG 57.204 40.909 0.00 0.00 0.00 4.85
3301 9625 8.487028 CCTGAAGAGTAGATACCAAGGTTAATT 58.513 37.037 0.00 0.00 0.00 1.40
3302 9626 7.844779 TCCTGAAGAGTAGATACCAAGGTTAAT 59.155 37.037 0.00 0.00 0.00 1.40
3303 9627 7.186972 TCCTGAAGAGTAGATACCAAGGTTAA 58.813 38.462 0.00 0.00 0.00 2.01
3313 9637 4.580995 CCGAAAGCTCCTGAAGAGTAGATA 59.419 45.833 0.00 0.00 45.21 1.98
3334 9659 0.165944 GGACAATCAGAACAACGCCG 59.834 55.000 0.00 0.00 0.00 6.46
3347 9672 4.148128 CAAGGATGCAGACTAGGACAAT 57.852 45.455 0.00 0.00 0.00 2.71
3361 9686 7.041167 TGACGGATAATTTCTATTGCAAGGATG 60.041 37.037 4.94 0.00 0.00 3.51
3412 9737 5.936187 ATTCATCACTCTGTCTGATCAGT 57.064 39.130 21.92 0.00 36.85 3.41
3445 9770 0.178970 ATAGTATCTCGCCCCCGTGT 60.179 55.000 0.00 0.00 35.54 4.49
3516 9841 4.207281 TTCCCGCCTCGATCGCTG 62.207 66.667 11.09 4.71 0.00 5.18
3579 9904 2.740826 CCGCCTTGTACACGGTGG 60.741 66.667 30.09 30.09 42.77 4.61
3625 9950 2.987413 TGCATCTTTTTACAGCCACG 57.013 45.000 0.00 0.00 0.00 4.94
3631 9956 5.009610 GTCCACCTCTTTGCATCTTTTTACA 59.990 40.000 0.00 0.00 0.00 2.41
3646 9971 1.680651 CCTGCTCTCGTCCACCTCT 60.681 63.158 0.00 0.00 0.00 3.69
3931 10256 1.299976 GAGAAGGATGTTGGCGGGT 59.700 57.895 0.00 0.00 0.00 5.28
4129 10454 1.156736 GCTTTGACAGCGGCTTCTTA 58.843 50.000 0.00 0.00 39.29 2.10
4372 10697 1.940613 GTGAGGTTGTGACACTCCAAC 59.059 52.381 17.79 9.93 40.12 3.77
4386 10711 3.703556 CTCCATATCTGTGACTGTGAGGT 59.296 47.826 0.00 0.00 0.00 3.85
4687 11012 1.110442 CGAGCTGATGAAGAGAGGGT 58.890 55.000 0.00 0.00 0.00 4.34
4755 11088 5.407407 GTCTTGAACTGGAGACCTATTGA 57.593 43.478 0.00 0.00 37.02 2.57
4840 11173 5.221823 GGGCTCATATCTAGGCTTTCTCTTT 60.222 44.000 0.00 0.00 39.38 2.52
4843 11176 3.367910 CGGGCTCATATCTAGGCTTTCTC 60.368 52.174 0.00 0.00 39.38 2.87
4862 11195 3.882888 ACAATATATGTTTCAGCACCGGG 59.117 43.478 6.32 0.00 40.06 5.73
4863 11196 4.816385 AGACAATATATGTTTCAGCACCGG 59.184 41.667 0.00 0.00 44.12 5.28
4914 11247 3.127425 TCACGCTCTAGCTAGCTCATA 57.873 47.619 23.26 6.97 40.49 2.15
4965 11298 5.689383 TGTAGTTGACAAAATTCTGGCTC 57.311 39.130 0.00 0.00 34.15 4.70
5001 11334 2.007608 GTCCCTTGTAAATCTGTCCGC 58.992 52.381 0.00 0.00 0.00 5.54
5070 11403 4.501571 CCCACCACCTCATTATTAGAGTCG 60.502 50.000 0.00 0.00 0.00 4.18
5150 11485 6.312918 CCATATGGTGCGTGTATACTTAATCC 59.687 42.308 14.09 2.79 0.00 3.01
5175 11510 4.125703 CCATAAATCTGAGCCACACTCTC 58.874 47.826 0.00 0.00 46.41 3.20
5177 11512 3.118261 TCCCATAAATCTGAGCCACACTC 60.118 47.826 0.00 0.00 46.45 3.51
5207 11542 3.433274 TCTTGCTTACATCGTCTTTGCTG 59.567 43.478 0.00 0.00 0.00 4.41
5305 11641 1.290009 GCAGCATCCAAACACACCC 59.710 57.895 0.00 0.00 0.00 4.61
5306 11642 1.290009 GGCAGCATCCAAACACACC 59.710 57.895 0.00 0.00 0.00 4.16
5307 11643 1.290009 GGGCAGCATCCAAACACAC 59.710 57.895 0.00 0.00 0.00 3.82
5308 11644 0.758310 TTGGGCAGCATCCAAACACA 60.758 50.000 0.83 0.00 40.88 3.72
5309 11645 0.037975 CTTGGGCAGCATCCAAACAC 60.038 55.000 4.83 0.00 42.91 3.32
5310 11646 2.353858 CTTGGGCAGCATCCAAACA 58.646 52.632 4.83 0.00 42.91 2.83
5320 11656 2.487532 GCATGGCTAGCTTGGGCAG 61.488 63.158 15.72 12.00 42.26 4.85
5321 11657 2.440796 GCATGGCTAGCTTGGGCA 60.441 61.111 15.72 15.58 43.10 5.36
5322 11658 3.222121 GGCATGGCTAGCTTGGGC 61.222 66.667 15.72 12.92 39.06 5.36
5323 11659 1.380246 TTGGCATGGCTAGCTTGGG 60.380 57.895 21.08 3.35 0.00 4.12
5324 11660 1.669999 GGTTGGCATGGCTAGCTTGG 61.670 60.000 22.00 5.21 0.00 3.61
5325 11661 1.811860 GGTTGGCATGGCTAGCTTG 59.188 57.895 22.00 13.62 0.00 4.01
5326 11662 1.750399 CGGTTGGCATGGCTAGCTT 60.750 57.895 25.09 0.00 0.00 3.74
5327 11663 2.124570 CGGTTGGCATGGCTAGCT 60.125 61.111 25.09 0.00 0.00 3.32
5328 11664 2.438434 ACGGTTGGCATGGCTAGC 60.438 61.111 21.08 20.49 0.00 3.42
5329 11665 2.114670 CCACGGTTGGCATGGCTAG 61.115 63.158 21.08 10.95 35.56 3.42
5330 11666 2.045438 CCACGGTTGGCATGGCTA 60.045 61.111 21.08 10.42 35.56 3.93
5342 11678 3.905678 TTTTTGGCACGCCCACGG 61.906 61.111 5.42 0.00 45.34 4.94
5367 11703 0.676466 TTGTGGGCGGCAGAATACTG 60.676 55.000 12.47 0.00 45.91 2.74
5368 11704 0.676782 GTTGTGGGCGGCAGAATACT 60.677 55.000 12.47 0.00 0.00 2.12
5369 11705 0.676782 AGTTGTGGGCGGCAGAATAC 60.677 55.000 12.47 1.73 0.00 1.89
5370 11706 0.037590 AAGTTGTGGGCGGCAGAATA 59.962 50.000 12.47 0.00 0.00 1.75
5371 11707 1.228552 AAGTTGTGGGCGGCAGAAT 60.229 52.632 12.47 0.00 0.00 2.40
5372 11708 2.192861 CAAGTTGTGGGCGGCAGAA 61.193 57.895 12.47 0.00 0.00 3.02
5373 11709 2.594303 CAAGTTGTGGGCGGCAGA 60.594 61.111 12.47 0.00 0.00 4.26
5374 11710 4.347453 GCAAGTTGTGGGCGGCAG 62.347 66.667 12.47 0.00 0.00 4.85
5380 11716 3.211564 CTTGCGGGCAAGTTGTGGG 62.212 63.158 22.03 0.00 45.91 4.61
5381 11717 2.336088 CTTGCGGGCAAGTTGTGG 59.664 61.111 22.03 0.00 45.91 4.17
5394 11730 3.555547 AGTTCAATTTTTCGCCAACTTGC 59.444 39.130 0.00 0.00 0.00 4.01
5395 11731 4.025813 CCAGTTCAATTTTTCGCCAACTTG 60.026 41.667 0.00 0.00 0.00 3.16
5396 11732 4.119136 CCAGTTCAATTTTTCGCCAACTT 58.881 39.130 0.00 0.00 0.00 2.66
5397 11733 3.492482 CCCAGTTCAATTTTTCGCCAACT 60.492 43.478 0.00 0.00 0.00 3.16
5398 11734 2.799978 CCCAGTTCAATTTTTCGCCAAC 59.200 45.455 0.00 0.00 0.00 3.77
5399 11735 2.224161 CCCCAGTTCAATTTTTCGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
5400 11736 1.342819 CCCCAGTTCAATTTTTCGCCA 59.657 47.619 0.00 0.00 0.00 5.69
5401 11737 1.616374 TCCCCAGTTCAATTTTTCGCC 59.384 47.619 0.00 0.00 0.00 5.54
5402 11738 2.352715 CCTCCCCAGTTCAATTTTTCGC 60.353 50.000 0.00 0.00 0.00 4.70
5403 11739 2.352715 GCCTCCCCAGTTCAATTTTTCG 60.353 50.000 0.00 0.00 0.00 3.46
5404 11740 2.899900 AGCCTCCCCAGTTCAATTTTTC 59.100 45.455 0.00 0.00 0.00 2.29
5405 11741 2.976440 AGCCTCCCCAGTTCAATTTTT 58.024 42.857 0.00 0.00 0.00 1.94
5406 11742 2.702270 AGCCTCCCCAGTTCAATTTT 57.298 45.000 0.00 0.00 0.00 1.82
5407 11743 3.564352 CCTTAGCCTCCCCAGTTCAATTT 60.564 47.826 0.00 0.00 0.00 1.82
5408 11744 2.024941 CCTTAGCCTCCCCAGTTCAATT 60.025 50.000 0.00 0.00 0.00 2.32
5409 11745 1.566231 CCTTAGCCTCCCCAGTTCAAT 59.434 52.381 0.00 0.00 0.00 2.57
5410 11746 0.991920 CCTTAGCCTCCCCAGTTCAA 59.008 55.000 0.00 0.00 0.00 2.69
5411 11747 1.562672 GCCTTAGCCTCCCCAGTTCA 61.563 60.000 0.00 0.00 0.00 3.18
5412 11748 1.224870 GCCTTAGCCTCCCCAGTTC 59.775 63.158 0.00 0.00 0.00 3.01
5413 11749 1.541368 TGCCTTAGCCTCCCCAGTT 60.541 57.895 0.00 0.00 38.69 3.16
5414 11750 1.997874 CTGCCTTAGCCTCCCCAGT 60.998 63.158 0.00 0.00 38.69 4.00
5415 11751 2.914289 CTGCCTTAGCCTCCCCAG 59.086 66.667 0.00 0.00 38.69 4.45
5424 11760 3.329542 TTCGCCCTGGCTGCCTTAG 62.330 63.158 21.03 9.70 39.32 2.18
5425 11761 3.326578 TTCGCCCTGGCTGCCTTA 61.327 61.111 21.03 0.00 39.32 2.69
5430 11766 1.535204 AAATTGGTTCGCCCTGGCTG 61.535 55.000 6.60 0.24 39.32 4.85
5431 11767 0.039035 TAAATTGGTTCGCCCTGGCT 59.961 50.000 6.60 0.00 39.32 4.75
5432 11768 1.111277 ATAAATTGGTTCGCCCTGGC 58.889 50.000 0.00 0.00 36.08 4.85
5433 11769 3.163630 CAATAAATTGGTTCGCCCTGG 57.836 47.619 0.00 0.00 36.08 4.45
5454 11790 0.996727 GCGCGTGTTTGGTTGATGAC 60.997 55.000 8.43 0.00 0.00 3.06
5455 11791 1.281353 GCGCGTGTTTGGTTGATGA 59.719 52.632 8.43 0.00 0.00 2.92
5456 11792 1.729131 GGCGCGTGTTTGGTTGATG 60.729 57.895 8.43 0.00 0.00 3.07
5457 11793 2.642700 GGCGCGTGTTTGGTTGAT 59.357 55.556 8.43 0.00 0.00 2.57
5458 11794 3.587933 GGGCGCGTGTTTGGTTGA 61.588 61.111 8.43 0.00 0.00 3.18
5459 11795 3.893763 TGGGCGCGTGTTTGGTTG 61.894 61.111 8.43 0.00 0.00 3.77
5460 11796 3.894947 GTGGGCGCGTGTTTGGTT 61.895 61.111 8.43 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.