AutoCloner

Multiple sequence alignment - TraesCS3D01G003500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G003500	chr3D	100.000	2561	0	0	1	2561	1604022	1601462	0.000000e+00	4730.0
1	TraesCS3D01G003500	chr3D	92.758	718	30	5	1575	2290	1594393	1593696	0.000000e+00	1018.0
2	TraesCS3D01G003500	chr3D	84.461	399	48	11	2139	2525	476459303	476458907	5.170000e-102	381.0
3	TraesCS3D01G003500	chr3D	85.479	303	36	5	2214	2508	476467228	476466926	2.470000e-80	309.0
4	TraesCS3D01G003500	chr3D	84.314	153	16	6	2195	2340	266518953	266518802	2.660000e-30	143.0
5	TraesCS3D01G003500	chr1D	93.421	988	43	5	1575	2561	180830894	180831860	0.000000e+00	1445.0
6	TraesCS3D01G003500	chr3A	82.199	1073	122	38	1	1042	7433846	7432812	0.000000e+00	859.0
7	TraesCS3D01G003500	chr3A	95.038	524	26	0	1051	1574	7432768	7432245	0.000000e+00	824.0
8	TraesCS3D01G003500	chr3A	85.567	97	12	2	1	95	429671459	429671363	1.620000e-17	100.0
9	TraesCS3D01G003500	chr3A	75.135	185	33	13	518	700	429670894	429670721	9.830000e-10	75.0
10	TraesCS3D01G003500	chr7A	88.314	599	53	13	1576	2164	471802414	471801823	0.000000e+00	702.0
11	TraesCS3D01G003500	chr7A	87.570	539	57	7	1576	2106	602178741	602178205	1.300000e-172	616.0
12	TraesCS3D01G003500	chr7A	91.228	456	29	9	1575	2028	306466016	306465570	6.060000e-171	610.0
13	TraesCS3D01G003500	chr7A	88.435	294	32	2	2215	2508	263245633	263245924	1.130000e-93	353.0
14	TraesCS3D01G003500	chr3B	89.179	536	47	6	1052	1576	3629128	3628593	0.000000e+00	658.0
15	TraesCS3D01G003500	chr3B	89.179	536	47	6	1049	1573	5207215	5207750	0.000000e+00	658.0
16	TraesCS3D01G003500	chr3B	84.440	527	55	13	461	966	3629718	3629198	6.370000e-136	494.0
17	TraesCS3D01G003500	chr3B	84.400	500	50	14	514	992	5206693	5207185	1.390000e-127	466.0
18	TraesCS3D01G003500	chr3B	88.809	277	25	3	1	272	3630023	3629748	4.080000e-88	335.0
19	TraesCS3D01G003500	chr3B	89.130	276	20	6	1	269	5206363	5206635	4.080000e-88	335.0
20	TraesCS3D01G003500	chr3B	86.975	238	28	1	1336	1573	4638594	4638828	5.430000e-67	265.0
21	TraesCS3D01G003500	chr6A	88.337	523	52	8	1575	2090	255135850	255135330	1.010000e-173	619.0
22	TraesCS3D01G003500	chr5A	87.335	529	50	11	1573	2090	532570357	532570879	7.890000e-165	590.0
23	TraesCS3D01G003500	chr5A	86.157	549	59	9	1572	2107	532587377	532587921	6.140000e-161	577.0
24	TraesCS3D01G003500	chr7B	84.760	584	66	17	1572	2147	13134684	13135252	4.780000e-157	564.0
25	TraesCS3D01G003500	chr7B	96.552	58	2	0	2502	2559	127802763	127802820	2.100000e-16	97.1
26	TraesCS3D01G003500	chr5D	86.464	362	40	6	2168	2521	202891341	202891701	3.090000e-104	388.0
27	TraesCS3D01G003500	chr5D	86.029	136	16	3	2196	2328	227244810	227244945	2.660000e-30	143.0
28	TraesCS3D01G003500	chr5D	93.103	58	4	0	2502	2559	129136460	129136403	4.540000e-13	86.1
29	TraesCS3D01G003500	chr5D	97.727	44	1	0	2502	2545	36070598	36070641	2.730000e-10	76.8
30	TraesCS3D01G003500	chr2D	86.282	277	29	5	2253	2521	376578228	376577953	2.490000e-75	292.0
31	TraesCS3D01G003500	chr2D	85.870	276	30	5	2253	2521	376569570	376569297	4.170000e-73	285.0
32	TraesCS3D01G003500	chr2D	88.372	129	12	2	1	126	14102362	14102490	4.410000e-33	152.0
33	TraesCS3D01G003500	chr2D	86.822	129	15	2	1	127	14104293	14104421	2.660000e-30	143.0
34	TraesCS3D01G003500	chr4D	87.264	212	21	4	2322	2529	113199310	113199101	1.180000e-58	237.0
35	TraesCS3D01G003500	chr4D	89.773	88	7	2	25	111	69217611	69217697	7.490000e-21	111.0
36	TraesCS3D01G003500	chr4D	90.000	50	5	0	2168	2217	469127757	469127708	5.910000e-07	65.8
37	TraesCS3D01G003500	chr5B	74.606	634	111	32	2	617	381036669	381036068	1.530000e-57	233.0
38	TraesCS3D01G003500	chr1A	86.792	212	22	5	2322	2529	525242721	525242930	5.510000e-57	231.0
39	TraesCS3D01G003500	chr6B	87.912	91	8	2	7	94	142966296	142966206	1.250000e-18	104.0
40	TraesCS3D01G003500	chr4B	85.567	97	12	2	4	99	135074176	135074271	1.620000e-17	100.0
41	TraesCS3D01G003500	chr1B	84.615	104	11	3	18	117	198470717	198470615	5.830000e-17	99.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G003500	chr3D	1601462	1604022	2560	True	4730.000000	4730	100.000000	1	2561	1	chr3D.!!$R2	2560
1	TraesCS3D01G003500	chr3D	1593696	1594393	697	True	1018.000000	1018	92.758000	1575	2290	1	chr3D.!!$R1	715
2	TraesCS3D01G003500	chr1D	180830894	180831860	966	False	1445.000000	1445	93.421000	1575	2561	1	chr1D.!!$F1	986
3	TraesCS3D01G003500	chr3A	7432245	7433846	1601	True	841.500000	859	88.618500	1	1574	2	chr3A.!!$R1	1573
4	TraesCS3D01G003500	chr7A	471801823	471802414	591	True	702.000000	702	88.314000	1576	2164	1	chr7A.!!$R2	588
5	TraesCS3D01G003500	chr7A	602178205	602178741	536	True	616.000000	616	87.570000	1576	2106	1	chr7A.!!$R3	530
6	TraesCS3D01G003500	chr3B	3628593	3630023	1430	True	495.666667	658	87.476000	1	1576	3	chr3B.!!$R1	1575
7	TraesCS3D01G003500	chr3B	5206363	5207750	1387	False	486.333333	658	87.569667	1	1573	3	chr3B.!!$F2	1572
8	TraesCS3D01G003500	chr6A	255135330	255135850	520	True	619.000000	619	88.337000	1575	2090	1	chr6A.!!$R1	515
9	TraesCS3D01G003500	chr5A	532570357	532570879	522	False	590.000000	590	87.335000	1573	2090	1	chr5A.!!$F1	517
10	TraesCS3D01G003500	chr5A	532587377	532587921	544	False	577.000000	577	86.157000	1572	2107	1	chr5A.!!$F2	535
11	TraesCS3D01G003500	chr7B	13134684	13135252	568	False	564.000000	564	84.760000	1572	2147	1	chr7B.!!$F1	575
12	TraesCS3D01G003500	chr5B	381036068	381036669	601	True	233.000000	233	74.606000	2	617	1	chr5B.!!$R1	615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
563	626	0.106149	AGAACGTTCGCCAGGAAACT	59.894	50.0	21.87	0.0	46.44	2.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2386	2563	0.101399	AGACGGACAGCGATGATGAC	59.899	55.0	8.12	0.0	0.0	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
284	326	5.697633	GCCTATAATGAAAAATGCATGTGGG	59.302	40.000	0.00	0.00	0.00	4.61
291	333	5.435291	TGAAAAATGCATGTGGGAAGTTTT	58.565	33.333	0.00	0.05	0.00	2.43
293	335	3.405823	AATGCATGTGGGAAGTTTTGG	57.594	42.857	0.00	0.00	0.00	3.28
298	345	4.195416	GCATGTGGGAAGTTTTGGAAAAA	58.805	39.130	0.00	0.00	0.00	1.94
319	367	9.639601	GAAAAACCCCTCTAAAAATAGTGATTG	57.360	33.333	0.00	0.00	0.00	2.67
449	497	4.688021	GCAAATGTTCACAAAACCCTACA	58.312	39.130	0.00	0.00	0.00	2.74
453	501	5.964958	ATGTTCACAAAACCCTACATCAG	57.035	39.130	0.00	0.00	0.00	2.90
459	507	3.262420	CAAAACCCTACATCAGTCGAGG	58.738	50.000	0.00	0.00	0.00	4.63
487	549	2.811317	CGTGCGCAGGAGTTCCTC	60.811	66.667	25.09	1.02	46.65	3.71
508	570	1.014564	GTTTGAACTCCTCCTCGCGG	61.015	60.000	6.13	0.00	0.00	6.46
563	626	0.106149	AGAACGTTCGCCAGGAAACT	59.894	50.000	21.87	0.00	46.44	2.66
678	743	0.460109	TGGCCGATGTTCGTCAGATG	60.460	55.000	0.00	0.00	38.40	2.90
681	746	1.191944	CCGATGTTCGTCAGATGTCG	58.808	55.000	0.00	0.00	38.40	4.35
688	753	0.109458	TCGTCAGATGTCGTTTCCGG	60.109	55.000	0.00	0.00	33.95	5.14
691	756	2.409975	GTCAGATGTCGTTTCCGGAAA	58.590	47.619	25.67	25.67	33.95	3.13
692	757	2.412089	GTCAGATGTCGTTTCCGGAAAG	59.588	50.000	29.63	21.61	33.95	2.62
693	758	2.297880	TCAGATGTCGTTTCCGGAAAGA	59.702	45.455	29.63	23.34	33.95	2.52
695	760	3.496884	CAGATGTCGTTTCCGGAAAGAAA	59.503	43.478	29.63	21.86	33.40	2.52
696	761	4.154195	CAGATGTCGTTTCCGGAAAGAAAT	59.846	41.667	29.63	24.92	38.01	2.17
704	769	7.270579	GTCGTTTCCGGAAAGAAATAAAATCTG	59.729	37.037	29.63	10.12	38.01	2.90
730	820	1.314730	ATTTGGTCAAACCGTCGCTT	58.685	45.000	0.00	0.00	42.58	4.68
845	936	1.579932	ACGACTGTCGCGTCAATCT	59.420	52.632	28.27	5.00	45.12	2.40
871	962	2.349755	GCTGGCCGGGTCAAACTA	59.650	61.111	15.02	0.00	0.00	2.24
875	966	0.251916	TGGCCGGGTCAAACTATCTG	59.748	55.000	2.18	0.00	0.00	2.90
878	969	1.207329	GCCGGGTCAAACTATCTGACT	59.793	52.381	2.18	0.00	42.38	3.41
901	992	1.508088	CTGCACGGCCAAGGAATTC	59.492	57.895	2.24	0.00	0.00	2.17
911	1002	1.581934	CAAGGAATTCGAGCGCCATA	58.418	50.000	2.29	0.00	0.00	2.74
927	1023	2.420642	CCATATCCAGCCACGATTCTG	58.579	52.381	0.00	0.00	0.00	3.02
928	1024	2.224378	CCATATCCAGCCACGATTCTGT	60.224	50.000	0.00	0.00	0.00	3.41
945	1041	2.680352	TCCAGTCCAGTCTCCGGC	60.680	66.667	0.00	0.00	0.00	6.13
989	1097	3.839432	GCCGCGGCTACTCTCCTT	61.839	66.667	41.71	0.00	38.26	3.36
991	1099	2.413765	CGCGGCTACTCTCCTTCC	59.586	66.667	0.00	0.00	0.00	3.46
992	1100	2.122167	CGCGGCTACTCTCCTTCCT	61.122	63.158	0.00	0.00	0.00	3.36
995	1103	0.457851	CGGCTACTCTCCTTCCTGTG	59.542	60.000	0.00	0.00	0.00	3.66
999	1107	1.133407	CTACTCTCCTTCCTGTGCGTC	59.867	57.143	0.00	0.00	0.00	5.19
1000	1108	1.216710	CTCTCCTTCCTGTGCGTCC	59.783	63.158	0.00	0.00	0.00	4.79
1001	1109	2.125912	CTCCTTCCTGTGCGTCCG	60.126	66.667	0.00	0.00	0.00	4.79
1002	1110	2.915659	TCCTTCCTGTGCGTCCGT	60.916	61.111	0.00	0.00	0.00	4.69
1003	1111	2.738521	CCTTCCTGTGCGTCCGTG	60.739	66.667	0.00	0.00	0.00	4.94
1004	1112	3.414700	CTTCCTGTGCGTCCGTGC	61.415	66.667	0.00	0.00	0.00	5.34
1005	1113	3.865929	CTTCCTGTGCGTCCGTGCT	62.866	63.158	0.00	0.00	35.36	4.40
1023	1131	2.025510	TGCTCTCTCAGTGATCTCTCCA	60.026	50.000	0.00	0.00	0.00	3.86
1039	1147	0.034863	TCCATTCCCCGGCTTGTAAC	60.035	55.000	0.00	0.00	0.00	2.50
1043	1151	0.614812	TTCCCCGGCTTGTAACCTAC	59.385	55.000	0.00	0.00	0.00	3.18
1044	1152	0.252375	TCCCCGGCTTGTAACCTACT	60.252	55.000	0.00	0.00	0.00	2.57
1046	1154	0.177373	CCCGGCTTGTAACCTACTCC	59.823	60.000	0.00	0.00	0.00	3.85
1047	1155	1.192428	CCGGCTTGTAACCTACTCCT	58.808	55.000	0.00	0.00	0.00	3.69
1048	1156	1.553704	CCGGCTTGTAACCTACTCCTT	59.446	52.381	0.00	0.00	0.00	3.36
1049	1157	2.618053	CGGCTTGTAACCTACTCCTTG	58.382	52.381	0.00	0.00	0.00	3.61
1534	1686	1.968540	GCGGCAGTCAAGAAAGCCT	60.969	57.895	10.92	0.00	44.85	4.58
1564	1716	1.070134	TCCCCGCCGAGAATTAATCAG	59.930	52.381	0.00	0.00	0.00	2.90
1581	1733	2.621338	TCAGCATCTCGATTTGTGACC	58.379	47.619	0.00	0.00	0.00	4.02
1584	1736	1.407437	GCATCTCGATTTGTGACCCCT	60.407	52.381	0.00	0.00	0.00	4.79
1621	1773	5.945310	ACAGTAATCCCATGCTAATGATGT	58.055	37.500	0.00	0.00	35.67	3.06
1673	1825	5.746539	TCGCGTTAGTTTAAAAACCGATTT	58.253	33.333	5.77	0.00	39.71	2.17
2123	2299	1.898190	TACTTAGGCTGGCCTCCCCT	61.898	60.000	18.06	9.50	44.43	4.79
2157	2334	2.309504	CCCCTCCCACTTCTTCCCC	61.310	68.421	0.00	0.00	0.00	4.81
2278	2455	3.000819	CCCCTGCTACGGTGGACA	61.001	66.667	0.00	0.00	0.00	4.02
2356	2533	4.688419	GCGGTTCCGACGTCGTCA	62.688	66.667	33.49	18.88	37.74	4.35
2397	2574	2.413351	CCCGACGTCATCATCGCT	59.587	61.111	17.16	0.00	37.01	4.93
2449	2626	0.166814	GAATGCACAACGACAGGCTC	59.833	55.000	0.00	0.00	0.00	4.70

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
235	276	9.429600	GCAGCATAGAAATTTATTTGCATTTTC	57.570	29.630	23.82	9.05	0.00	2.29
260	301	5.697633	CCCACATGCATTTTTCATTATAGGC	59.302	40.000	0.00	0.00	0.00	3.93
269	310	5.277925	CCAAAACTTCCCACATGCATTTTTC	60.278	40.000	0.00	0.00	0.00	2.29
284	326	6.474140	TTAGAGGGGTTTTTCCAAAACTTC	57.526	37.500	10.98	7.48	38.11	3.01
291	333	7.299134	TCACTATTTTTAGAGGGGTTTTTCCA	58.701	34.615	0.00	0.00	38.11	3.53
293	335	9.639601	CAATCACTATTTTTAGAGGGGTTTTTC	57.360	33.333	0.00	0.00	0.00	2.29
298	345	7.238710	ACAACAATCACTATTTTTAGAGGGGT	58.761	34.615	0.00	0.00	0.00	4.95
416	464	1.336755	GAACATTTGCGACCCAACTGT	59.663	47.619	0.00	0.00	45.72	3.55
422	470	2.500509	TTTGTGAACATTTGCGACCC	57.499	45.000	0.00	0.00	0.00	4.46
449	497	1.457831	GTAGGGGCCCTCGACTGAT	60.458	63.158	32.78	4.84	34.61	2.90
482	544	3.318313	AGGAGGAGTTCAAACTGAGGAA	58.682	45.455	0.00	0.00	39.88	3.36
485	547	2.928731	GCGAGGAGGAGTTCAAACTGAG	60.929	54.545	0.00	0.00	39.88	3.35
487	549	1.433534	GCGAGGAGGAGTTCAAACTG	58.566	55.000	0.00	0.00	39.88	3.16
563	626	1.214367	GGAGTCGTTCGCTGTCAAAA	58.786	50.000	0.00	0.00	0.00	2.44
681	746	6.310467	GGCAGATTTTATTTCTTTCCGGAAAC	59.690	38.462	25.67	11.65	37.91	2.78
691	756	8.782339	CCAAATTCTTGGCAGATTTTATTTCT	57.218	30.769	3.72	0.00	45.67	2.52
730	820	2.621338	CAGCTAATCACCTTTGAGCGA	58.379	47.619	0.00	0.00	34.35	4.93
832	922	1.154093	GACGGAGATTGACGCGACA	60.154	57.895	15.93	11.23	0.00	4.35
835	926	3.607987	GCGACGGAGATTGACGCG	61.608	66.667	3.53	3.53	39.90	6.01
868	959	1.827969	GTGCAGGACCAGTCAGATAGT	59.172	52.381	0.00	0.00	0.00	2.12
869	960	1.202348	CGTGCAGGACCAGTCAGATAG	60.202	57.143	0.00	0.00	0.00	2.08
870	961	0.817654	CGTGCAGGACCAGTCAGATA	59.182	55.000	0.00	0.00	0.00	1.98
871	962	1.593787	CGTGCAGGACCAGTCAGAT	59.406	57.895	0.00	0.00	0.00	2.90
901	992	2.740055	GGCTGGATATGGCGCTCG	60.740	66.667	7.64	0.00	0.00	5.03
911	1002	0.179000	GGACAGAATCGTGGCTGGAT	59.821	55.000	0.00	0.00	36.47	3.41
927	1023	3.007973	GCCGGAGACTGGACTGGAC	62.008	68.421	5.05	0.00	34.76	4.02
928	1024	2.680352	GCCGGAGACTGGACTGGA	60.680	66.667	5.05	0.00	34.76	3.86
960	1056	1.954146	CCGCGGCTTATATGCACGT	60.954	57.895	14.67	0.00	33.99	4.49
982	1090	1.216710	GGACGCACAGGAAGGAGAG	59.783	63.158	0.00	0.00	0.00	3.20
989	1097	4.357947	GAGCACGGACGCACAGGA	62.358	66.667	0.00	0.00	0.00	3.86
991	1099	2.807045	GAGAGCACGGACGCACAG	60.807	66.667	0.00	0.00	0.00	3.66
992	1100	3.268965	GAGAGAGCACGGACGCACA	62.269	63.158	0.00	0.00	0.00	4.57
995	1103	2.202544	CTGAGAGAGCACGGACGC	60.203	66.667	0.00	0.00	0.00	5.19
999	1107	1.065401	GAGATCACTGAGAGAGCACGG	59.935	57.143	0.00	0.00	0.00	4.94
1000	1108	2.016318	AGAGATCACTGAGAGAGCACG	58.984	52.381	0.00	0.00	0.00	5.34
1001	1109	2.358898	GGAGAGATCACTGAGAGAGCAC	59.641	54.545	0.00	0.00	0.00	4.40
1002	1110	2.025510	TGGAGAGATCACTGAGAGAGCA	60.026	50.000	0.00	0.00	0.00	4.26
1003	1111	2.653726	TGGAGAGATCACTGAGAGAGC	58.346	52.381	0.00	0.00	0.00	4.09
1004	1112	4.279169	GGAATGGAGAGATCACTGAGAGAG	59.721	50.000	0.00	0.00	0.00	3.20
1005	1113	4.214310	GGAATGGAGAGATCACTGAGAGA	58.786	47.826	0.00	0.00	0.00	3.10
1023	1131	1.211212	GTAGGTTACAAGCCGGGGAAT	59.789	52.381	2.18	0.00	0.00	3.01
1039	1147	1.338136	ATGTCGCCCCAAGGAGTAGG	61.338	60.000	0.00	0.00	33.97	3.18
1043	1151	2.124570	CCATGTCGCCCCAAGGAG	60.125	66.667	0.00	0.00	33.47	3.69
1044	1152	4.424711	GCCATGTCGCCCCAAGGA	62.425	66.667	0.00	0.00	33.47	3.36
1046	1154	4.776322	TCGCCATGTCGCCCCAAG	62.776	66.667	0.00	0.00	0.00	3.61
1047	1155	4.776322	CTCGCCATGTCGCCCCAA	62.776	66.667	0.00	0.00	0.00	4.12
1263	1406	2.281761	AGGTGCTTCCGGTTGCTG	60.282	61.111	18.72	1.37	41.99	4.41
1516	1665	2.563427	GGCTTTCTTGACTGCCGC	59.437	61.111	0.00	0.00	35.79	6.53
1522	1674	1.377333	CGGGGGAGGCTTTCTTGAC	60.377	63.158	0.00	0.00	0.00	3.18
1547	1699	1.581934	TGCTGATTAATTCTCGGCGG	58.418	50.000	7.21	0.00	45.99	6.13
1564	1716	1.017387	GGGGTCACAAATCGAGATGC	58.983	55.000	0.00	0.00	0.00	3.91
1581	1733	7.824779	GGATTACTGTAGCTTAATTATCCAGGG	59.175	40.741	0.00	0.00	31.54	4.45
1584	1736	8.270137	TGGGATTACTGTAGCTTAATTATCCA	57.730	34.615	11.12	0.00	32.56	3.41
1621	1773	2.156917	ACAGTAATCGAGGTGACGTGA	58.843	47.619	0.00	0.00	34.70	4.35
2123	2299	3.390819	GAGGGGATTTAGGGTTAGGTGA	58.609	50.000	0.00	0.00	0.00	4.02
2157	2334	1.768077	GGGAGGGGGTGAGAGGATG	60.768	68.421	0.00	0.00	0.00	3.51
2203	2380	4.577246	CTAGGGCGACAGCGAGGC	62.577	72.222	0.00	0.00	46.35	4.70
2204	2381	4.577246	GCTAGGGCGACAGCGAGG	62.577	72.222	0.00	0.00	46.35	4.63
2205	2382	3.477224	GAGCTAGGGCGACAGCGAG	62.477	68.421	0.00	0.00	46.35	5.03
2206	2383	3.518998	GAGCTAGGGCGACAGCGA	61.519	66.667	0.00	0.00	46.35	4.93
2207	2384	4.577246	GGAGCTAGGGCGACAGCG	62.577	72.222	0.00	0.00	46.35	5.18
2208	2385	4.577246	CGGAGCTAGGGCGACAGC	62.577	72.222	0.00	0.00	44.37	4.40
2386	2563	0.101399	AGACGGACAGCGATGATGAC	59.899	55.000	8.12	0.00	0.00	3.06
2397	2574	1.681327	GGCCTGAGGTAGACGGACA	60.681	63.158	0.00	0.00	0.00	4.02
2449	2626	0.103937	GAGGGAAGAGGCTCACATCG	59.896	60.000	18.26	0.00	0.00	3.84

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.