Multiple sequence alignment - TraesCS3D01G002000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G002000 chr3D 100.000 4993 0 0 1 4993 930262 925270 0.000000e+00 9221.0
1 TraesCS3D01G002000 chr3D 92.920 113 7 1 4597 4708 687558 687670 4.000000e-36 163.0
2 TraesCS3D01G002000 chr3D 91.892 111 7 2 4622 4730 755661 755771 2.410000e-33 154.0
3 TraesCS3D01G002000 chr3A 94.349 4442 156 35 1 4359 8589473 8593902 0.000000e+00 6724.0
4 TraesCS3D01G002000 chr3A 86.382 492 40 17 4398 4879 8598467 8598941 3.450000e-141 512.0
5 TraesCS3D01G002000 chr3A 86.577 298 23 13 4421 4708 8901851 8901561 3.750000e-81 313.0
6 TraesCS3D01G002000 chr3A 95.312 192 9 0 4398 4589 8906563 8906372 6.280000e-79 305.0
7 TraesCS3D01G002000 chr3A 80.876 251 28 15 4599 4836 8594713 8594956 3.970000e-41 180.0
8 TraesCS3D01G002000 chr3A 85.906 149 18 3 4597 4742 8906178 8906030 6.690000e-34 156.0
9 TraesCS3D01G002000 chr3B 90.546 2528 129 50 1907 4359 5583649 5586141 0.000000e+00 3243.0
10 TraesCS3D01G002000 chr3B 95.699 1767 64 8 1 1761 5581516 5583276 0.000000e+00 2832.0
11 TraesCS3D01G002000 chr3B 88.649 370 31 7 4628 4993 5592821 5593183 1.650000e-119 440.0
12 TraesCS3D01G002000 chr3B 88.649 370 31 7 4628 4993 5738612 5738250 1.650000e-119 440.0
13 TraesCS3D01G002000 chr3B 91.304 115 8 2 4631 4744 5587344 5587457 6.690000e-34 156.0
14 TraesCS3D01G002000 chr7D 91.355 1793 120 26 731 2506 12901089 12902863 0.000000e+00 2420.0
15 TraesCS3D01G002000 chr7D 89.835 787 53 16 2798 3567 12903635 12904411 0.000000e+00 985.0
16 TraesCS3D01G002000 chr7D 84.151 713 62 25 3632 4297 12904568 12905276 1.170000e-180 643.0
17 TraesCS3D01G002000 chr7D 87.973 449 42 6 1 445 12899139 12899579 2.060000e-143 520.0
18 TraesCS3D01G002000 chr7D 90.336 238 22 1 2571 2807 12902993 12903230 1.350000e-80 311.0
19 TraesCS3D01G002000 chr7D 96.512 86 3 0 487 572 12899580 12899665 5.210000e-30 143.0
20 TraesCS3D01G002000 chr7B 92.164 1608 101 15 731 2328 366046611 366048203 0.000000e+00 2248.0
21 TraesCS3D01G002000 chr7B 89.427 1012 73 22 2571 3566 366051930 366052923 0.000000e+00 1245.0
22 TraesCS3D01G002000 chr7B 84.129 712 61 22 3632 4297 366053073 366053778 4.210000e-180 641.0
23 TraesCS3D01G002000 chr7B 86.878 442 47 7 1 439 366041672 366042105 7.520000e-133 484.0
24 TraesCS3D01G002000 chr7B 90.306 196 18 1 2311 2506 366051607 366051801 6.410000e-64 255.0
25 TraesCS3D01G002000 chr7B 91.228 114 10 0 2393 2506 397442798 397442685 6.690000e-34 156.0
26 TraesCS3D01G002000 chr7B 96.429 56 2 0 517 572 366042099 366042154 5.320000e-15 93.5
27 TraesCS3D01G002000 chr7A 91.390 1626 117 13 887 2506 409257553 409259161 0.000000e+00 2206.0
28 TraesCS3D01G002000 chr7A 92.101 595 33 8 2813 3394 409259616 409260209 0.000000e+00 826.0
29 TraesCS3D01G002000 chr7A 88.276 580 55 7 1 576 409255076 409255646 0.000000e+00 682.0
30 TraesCS3D01G002000 chr7A 84.410 712 60 22 3632 4297 409262977 409263683 0.000000e+00 652.0
31 TraesCS3D01G002000 chr7A 90.756 238 21 1 2571 2807 409259290 409259527 2.900000e-82 316.0
32 TraesCS3D01G002000 chr7A 91.477 176 10 3 731 901 409257134 409257309 2.320000e-58 237.0
33 TraesCS3D01G002000 chr6A 90.909 121 10 1 2393 2512 151464828 151464708 1.440000e-35 161.0
34 TraesCS3D01G002000 chr6A 89.600 125 11 2 2382 2506 38683646 38683524 1.860000e-34 158.0
35 TraesCS3D01G002000 chr2A 91.228 114 10 0 2393 2506 778157183 778157070 6.690000e-34 156.0
36 TraesCS3D01G002000 chr2B 91.589 107 7 2 4621 4726 753940041 753939936 4.030000e-31 147.0
37 TraesCS3D01G002000 chr2D 88.525 61 4 3 3570 3629 534431302 534431360 2.490000e-08 71.3
38 TraesCS3D01G002000 chrUn 92.857 42 2 1 2589 2630 71293172 71293132 5.400000e-05 60.2
39 TraesCS3D01G002000 chr1A 97.143 35 1 0 2594 2628 150893133 150893099 5.400000e-05 60.2
40 TraesCS3D01G002000 chr4A 90.244 41 3 1 2590 2630 376719578 376719539 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G002000 chr3D 925270 930262 4992 True 9221.000000 9221 100.000000 1 4993 1 chr3D.!!$R1 4992
1 TraesCS3D01G002000 chr3A 8589473 8598941 9468 False 2472.000000 6724 87.202333 1 4879 3 chr3A.!!$F1 4878
2 TraesCS3D01G002000 chr3A 8906030 8906563 533 True 230.500000 305 90.609000 4398 4742 2 chr3A.!!$R2 344
3 TraesCS3D01G002000 chr3B 5581516 5587457 5941 False 2077.000000 3243 92.516333 1 4744 3 chr3B.!!$F2 4743
4 TraesCS3D01G002000 chr7D 12899139 12905276 6137 False 837.000000 2420 90.027000 1 4297 6 chr7D.!!$F1 4296
5 TraesCS3D01G002000 chr7B 366046611 366053778 7167 False 1097.250000 2248 89.006500 731 4297 4 chr7B.!!$F2 3566
6 TraesCS3D01G002000 chr7A 409255076 409263683 8607 False 819.833333 2206 89.735000 1 4297 6 chr7A.!!$F1 4296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 2215 0.174162 GCCTGTGCCATTTCCATGAC 59.826 55.0 0.0 0.0 31.07 3.06 F
2208 4156 0.327924 TGAATGCGAATCCCAGGTGT 59.672 50.0 0.0 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 7950 5.545658 TTAAAGATCTCAATTGTGCGTCC 57.454 39.13 5.13 0.0 0.00 4.79 R
4074 12551 0.326618 ACCCTGCACCCTATACTGCT 60.327 55.00 0.00 0.0 34.29 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 3.706802 TGCTCTTGTCAAATTTGCGAA 57.293 38.095 13.54 7.31 0.00 4.70
424 436 2.857748 CAGCATGTTATGTGCAGCAATG 59.142 45.455 0.00 0.00 44.87 2.82
603 1806 5.667539 TGAAGTTGTAGGAAGGAGATCTG 57.332 43.478 0.00 0.00 0.00 2.90
808 2195 4.404394 TCCACTGTTGTTCTTACAGACAGA 59.596 41.667 18.46 1.41 44.52 3.41
828 2215 0.174162 GCCTGTGCCATTTCCATGAC 59.826 55.000 0.00 0.00 31.07 3.06
889 2279 4.444720 GGTGTTTCTCTCAGTTGTACTTCG 59.555 45.833 0.00 0.00 0.00 3.79
944 2595 9.341899 GCCATACTTACTTTATGTTTTTCTGTG 57.658 33.333 0.00 0.00 0.00 3.66
1099 2751 2.509548 AGCCAGCCATATGTTTCTACCA 59.490 45.455 1.24 0.00 0.00 3.25
1170 2822 1.144936 CCCTCCCTCTGTTCATCGC 59.855 63.158 0.00 0.00 0.00 4.58
1209 2861 0.948141 AAGAGCTGCTGCGTGAAGAC 60.948 55.000 7.01 0.00 45.42 3.01
1353 3005 3.054139 TGGTAATGCCAGCTGATTCTTCT 60.054 43.478 17.39 0.00 43.61 2.85
1508 3163 6.706270 TCCTCGAAAATCTTAATGATAGGCAC 59.294 38.462 0.00 0.00 34.45 5.01
2045 3993 4.941263 TGTGTTGCCTTGGAGTCATATAAC 59.059 41.667 0.00 0.00 0.00 1.89
2086 4034 5.924825 AGTGATCTCAAATTTGCTTTTCTGC 59.075 36.000 13.54 5.66 0.00 4.26
2208 4156 0.327924 TGAATGCGAATCCCAGGTGT 59.672 50.000 0.00 0.00 0.00 4.16
2256 4204 9.209175 TCTTGAGCTTTCTGATTTAGTTACTTC 57.791 33.333 0.00 0.00 0.00 3.01
2380 7753 1.337260 ACGTCACTGATGTTCTGCCTC 60.337 52.381 0.00 0.00 0.00 4.70
2444 7817 2.356535 GGCAGATCCAAACCATCTCAGT 60.357 50.000 0.00 0.00 34.01 3.41
2546 7950 7.429633 AGACTCAACACCATCTTATAGAATCG 58.570 38.462 0.00 0.00 0.00 3.34
2560 7964 2.002586 AGAATCGGACGCACAATTGAG 58.997 47.619 13.59 5.31 0.00 3.02
2592 8033 6.935741 TTACGCAAGAAATATGCCACTAAT 57.064 33.333 0.00 0.00 40.72 1.73
2759 8201 3.206150 CCACGAGGTATCCATCCTTTTG 58.794 50.000 0.00 0.00 35.20 2.44
2783 8228 9.569167 TTGTCGACTCTAGTACATCTTTATTTG 57.431 33.333 17.92 0.00 0.00 2.32
2862 8724 5.062308 CACGACTATGGTTTTGTCTAGCTTC 59.938 44.000 0.00 0.00 0.00 3.86
3000 8863 3.119849 GCTGGTGTAAAACTGCCTACATG 60.120 47.826 0.00 0.00 31.05 3.21
3151 9025 8.373220 TCTGATATATGACAGTGATTCATTGCT 58.627 33.333 8.90 0.00 35.31 3.91
3185 9059 4.236935 CGCTTTATTGTCCATTTTGCAGT 58.763 39.130 0.00 0.00 0.00 4.40
3205 9079 4.020543 AGTCTCTTCCTACCAAGCTAGTG 58.979 47.826 0.00 0.00 0.00 2.74
3316 9190 2.442126 ACATGGTGATGAGATGGAGCAT 59.558 45.455 0.00 0.00 33.36 3.79
3358 9232 7.092079 TGCATGTATGACTCATTTTTCCTTTG 58.908 34.615 0.00 0.00 0.00 2.77
3484 11809 6.016610 CCGGTCCAAAATATAAGGTGTATTGG 60.017 42.308 0.00 0.00 37.71 3.16
3525 11852 8.149647 TCAAAGCATTTCTATGTTTGACCAATT 58.850 29.630 0.00 0.00 35.03 2.32
3739 12180 1.568504 TGTAGGCGGTTCATCCTCTT 58.431 50.000 0.00 0.00 34.02 2.85
3746 12187 1.611673 CGGTTCATCCTCTTGCCAAGT 60.612 52.381 4.04 0.00 0.00 3.16
3782 12224 2.722629 CTGCGTTTCTTGCAATCAGTTG 59.277 45.455 0.00 0.00 42.70 3.16
3844 12294 2.780010 CCCAACTCTCCCCATGTTAGAT 59.220 50.000 0.00 0.00 0.00 1.98
3960 12431 2.159366 AGGCGTTCTCGTGTAGAAGATG 60.159 50.000 0.00 0.00 44.94 2.90
4011 12486 9.421806 CTGAATGATCAGTAGATATGAAAGGAC 57.578 37.037 0.09 0.00 46.60 3.85
4028 12503 1.399727 GGACCGTCATTTTCTTGCACG 60.400 52.381 0.00 0.00 0.00 5.34
4029 12504 1.263217 GACCGTCATTTTCTTGCACGT 59.737 47.619 0.00 0.00 0.00 4.49
4036 12512 5.623264 CGTCATTTTCTTGCACGTTGAATTA 59.377 36.000 0.00 0.00 0.00 1.40
4038 12514 7.273659 GTCATTTTCTTGCACGTTGAATTAAC 58.726 34.615 0.00 0.00 35.90 2.01
4045 12522 2.570169 CACGTTGAATTAACCAGCACG 58.430 47.619 0.00 0.00 35.84 5.34
4073 12550 8.379457 TGAATCTTTGAAGATCTCATATGCAG 57.621 34.615 6.70 0.00 44.67 4.41
4074 12551 8.208903 TGAATCTTTGAAGATCTCATATGCAGA 58.791 33.333 6.70 2.77 44.67 4.26
4075 12552 8.610248 AATCTTTGAAGATCTCATATGCAGAG 57.390 34.615 6.70 0.00 44.67 3.35
4076 12553 5.990386 TCTTTGAAGATCTCATATGCAGAGC 59.010 40.000 0.00 10.56 32.78 4.09
4077 12554 4.950205 TGAAGATCTCATATGCAGAGCA 57.050 40.909 17.07 0.00 44.86 4.26
4078 12555 4.884247 TGAAGATCTCATATGCAGAGCAG 58.116 43.478 17.07 2.88 43.65 4.24
4105 12602 2.627699 GGTGCAGGGTTGATGAAAGAAA 59.372 45.455 0.00 0.00 0.00 2.52
4155 12657 2.669569 GAAGTGCAGAGCGGGCAA 60.670 61.111 1.60 0.00 43.91 4.52
4164 12666 4.982701 AGCGGGCAAAGCAAGGCT 62.983 61.111 0.00 0.00 42.56 4.58
4323 16098 4.082190 GTCAGGATTGTAGACAGCTGTGTA 60.082 45.833 27.27 22.74 36.88 2.90
4324 16099 4.711846 TCAGGATTGTAGACAGCTGTGTAT 59.288 41.667 27.27 11.06 36.88 2.29
4325 16100 4.807834 CAGGATTGTAGACAGCTGTGTATG 59.192 45.833 27.27 14.37 36.88 2.39
4327 16102 4.383118 GGATTGTAGACAGCTGTGTATGGT 60.383 45.833 27.27 13.73 36.88 3.55
4328 16103 5.163447 GGATTGTAGACAGCTGTGTATGGTA 60.163 44.000 27.27 11.35 36.88 3.25
4332 16111 6.707290 TGTAGACAGCTGTGTATGGTAATTT 58.293 36.000 27.27 0.00 36.88 1.82
4392 16185 2.093658 ACGAGGAATGTTAAGGTGCGAT 60.094 45.455 0.00 0.00 0.00 4.58
4394 16187 4.116961 CGAGGAATGTTAAGGTGCGATTA 58.883 43.478 0.00 0.00 0.00 1.75
4395 16188 4.209288 CGAGGAATGTTAAGGTGCGATTAG 59.791 45.833 0.00 0.00 0.00 1.73
4396 16189 5.099042 AGGAATGTTAAGGTGCGATTAGT 57.901 39.130 0.00 0.00 0.00 2.24
4427 17475 6.542005 ACCCAAATTGGAAGTGTTTGAATTTC 59.458 34.615 14.62 0.00 40.96 2.17
4488 17536 3.961182 GCCTATTGCACATGTTCATCTG 58.039 45.455 0.00 0.00 40.77 2.90
4516 17564 2.688477 TCCTGGCCTTCACCAAAATTT 58.312 42.857 3.32 0.00 39.86 1.82
4586 17640 1.064952 TGCATGCATTGAGATGAAGCG 59.935 47.619 18.46 0.00 35.16 4.68
4589 17643 0.393402 TGCATTGAGATGAAGCGGCT 60.393 50.000 0.00 0.00 35.16 5.52
4614 18565 5.533528 TCATCCATAAGTAAACGGAGATCGA 59.466 40.000 0.00 0.00 42.43 3.59
4621 18572 5.046910 AGTAAACGGAGATCGAAACGTAA 57.953 39.130 7.33 0.00 42.43 3.18
4623 18574 4.635961 AAACGGAGATCGAAACGTAAAC 57.364 40.909 7.33 0.00 42.43 2.01
4624 18575 3.287312 ACGGAGATCGAAACGTAAACA 57.713 42.857 5.47 0.00 42.43 2.83
4626 18577 3.611113 ACGGAGATCGAAACGTAAACATG 59.389 43.478 5.47 0.00 42.43 3.21
4627 18578 3.855379 CGGAGATCGAAACGTAAACATGA 59.145 43.478 0.00 0.00 42.43 3.07
4744 18834 5.923733 TTATAATTCGGCCCATTGTTGTT 57.076 34.783 0.00 0.00 0.00 2.83
4745 18835 2.453983 AATTCGGCCCATTGTTGTTG 57.546 45.000 0.00 0.00 0.00 3.33
4747 18837 0.387202 TTCGGCCCATTGTTGTTGTG 59.613 50.000 0.00 0.00 0.00 3.33
4748 18838 0.753479 TCGGCCCATTGTTGTTGTGT 60.753 50.000 0.00 0.00 0.00 3.72
4750 18840 0.033366 GGCCCATTGTTGTTGTGTCC 59.967 55.000 0.00 0.00 0.00 4.02
4751 18841 0.749649 GCCCATTGTTGTTGTGTCCA 59.250 50.000 0.00 0.00 0.00 4.02
4752 18842 1.537990 GCCCATTGTTGTTGTGTCCAC 60.538 52.381 0.00 0.00 0.00 4.02
4753 18843 1.753649 CCCATTGTTGTTGTGTCCACA 59.246 47.619 0.00 0.00 39.98 4.17
4754 18844 2.364970 CCCATTGTTGTTGTGTCCACAT 59.635 45.455 0.20 0.00 41.52 3.21
4756 18846 2.575694 TTGTTGTTGTGTCCACATGC 57.424 45.000 0.20 0.00 41.52 4.06
4757 18847 1.467920 TGTTGTTGTGTCCACATGCA 58.532 45.000 0.20 0.00 41.52 3.96
4758 18848 1.404748 TGTTGTTGTGTCCACATGCAG 59.595 47.619 0.20 0.00 41.52 4.41
4759 18849 1.675483 GTTGTTGTGTCCACATGCAGA 59.325 47.619 0.20 0.00 41.52 4.26
4766 18856 3.005684 TGTGTCCACATGCAGAATTTTCC 59.994 43.478 0.00 0.00 36.21 3.13
4768 18858 3.640498 TGTCCACATGCAGAATTTTCCAA 59.360 39.130 0.00 0.00 0.00 3.53
4786 18876 1.135689 CAACCGGGCTTCGATTTTCTG 60.136 52.381 6.32 0.00 42.43 3.02
4803 18893 2.034221 GCTGGGCCCGTTTCTTCT 59.966 61.111 19.37 0.00 0.00 2.85
4804 18894 1.603739 GCTGGGCCCGTTTCTTCTT 60.604 57.895 19.37 0.00 0.00 2.52
4805 18895 1.587043 GCTGGGCCCGTTTCTTCTTC 61.587 60.000 19.37 0.00 0.00 2.87
4806 18896 0.036875 CTGGGCCCGTTTCTTCTTCT 59.963 55.000 19.37 0.00 0.00 2.85
4807 18897 0.476771 TGGGCCCGTTTCTTCTTCTT 59.523 50.000 19.37 0.00 0.00 2.52
4827 18917 2.249692 TTTTTAGTTGCTCGGCCCG 58.750 52.632 0.00 0.00 0.00 6.13
4839 18929 2.202566 CTCGGCCCGTTTCTTCTATTC 58.797 52.381 1.63 0.00 0.00 1.75
4840 18930 1.829222 TCGGCCCGTTTCTTCTATTCT 59.171 47.619 1.63 0.00 0.00 2.40
4850 18940 6.920758 CCGTTTCTTCTATTCTGGTCTATCAG 59.079 42.308 0.00 0.00 36.17 2.90
4890 18980 6.877611 TTTTTACTAGGCCAGTCTTCTTTG 57.122 37.500 5.01 0.00 38.80 2.77
4891 18981 5.562298 TTTACTAGGCCAGTCTTCTTTGT 57.438 39.130 5.01 0.00 38.80 2.83
4892 18982 5.562298 TTACTAGGCCAGTCTTCTTTGTT 57.438 39.130 5.01 0.00 38.80 2.83
4893 18983 6.675413 TTACTAGGCCAGTCTTCTTTGTTA 57.325 37.500 5.01 0.00 38.80 2.41
4894 18984 5.763876 ACTAGGCCAGTCTTCTTTGTTAT 57.236 39.130 5.01 0.00 28.33 1.89
4895 18985 6.869206 ACTAGGCCAGTCTTCTTTGTTATA 57.131 37.500 5.01 0.00 28.33 0.98
4896 18986 7.439108 ACTAGGCCAGTCTTCTTTGTTATAT 57.561 36.000 5.01 0.00 28.33 0.86
4897 18987 7.862675 ACTAGGCCAGTCTTCTTTGTTATATT 58.137 34.615 5.01 0.00 28.33 1.28
4898 18988 8.329502 ACTAGGCCAGTCTTCTTTGTTATATTT 58.670 33.333 5.01 0.00 28.33 1.40
4899 18989 7.631717 AGGCCAGTCTTCTTTGTTATATTTC 57.368 36.000 5.01 0.00 0.00 2.17
4900 18990 6.603599 AGGCCAGTCTTCTTTGTTATATTTCC 59.396 38.462 5.01 0.00 0.00 3.13
4901 18991 6.603599 GGCCAGTCTTCTTTGTTATATTTCCT 59.396 38.462 0.00 0.00 0.00 3.36
4902 18992 7.122799 GGCCAGTCTTCTTTGTTATATTTCCTT 59.877 37.037 0.00 0.00 0.00 3.36
4903 18993 8.523658 GCCAGTCTTCTTTGTTATATTTCCTTT 58.476 33.333 0.00 0.00 0.00 3.11
4936 19026 8.771920 AAACTTTTGAGAATTTCTTTCCGTTT 57.228 26.923 0.00 5.09 34.67 3.60
4937 19027 8.771920 AACTTTTGAGAATTTCTTTCCGTTTT 57.228 26.923 0.00 0.00 34.67 2.43
4938 19028 9.863845 AACTTTTGAGAATTTCTTTCCGTTTTA 57.136 25.926 0.00 0.00 34.67 1.52
4946 19036 9.783256 AGAATTTCTTTCCGTTTTATATTTCCG 57.217 29.630 0.00 0.00 34.67 4.30
4947 19037 9.563898 GAATTTCTTTCCGTTTTATATTTCCGT 57.436 29.630 0.00 0.00 0.00 4.69
4948 19038 9.917129 AATTTCTTTCCGTTTTATATTTCCGTT 57.083 25.926 0.00 0.00 0.00 4.44
4949 19039 8.953507 TTTCTTTCCGTTTTATATTTCCGTTC 57.046 30.769 0.00 0.00 0.00 3.95
4950 19040 7.670009 TCTTTCCGTTTTATATTTCCGTTCA 57.330 32.000 0.00 0.00 0.00 3.18
4951 19041 8.271312 TCTTTCCGTTTTATATTTCCGTTCAT 57.729 30.769 0.00 0.00 0.00 2.57
4952 19042 8.392612 TCTTTCCGTTTTATATTTCCGTTCATC 58.607 33.333 0.00 0.00 0.00 2.92
4953 19043 6.607735 TCCGTTTTATATTTCCGTTCATCC 57.392 37.500 0.00 0.00 0.00 3.51
4954 19044 6.114089 TCCGTTTTATATTTCCGTTCATCCA 58.886 36.000 0.00 0.00 0.00 3.41
4955 19045 6.598457 TCCGTTTTATATTTCCGTTCATCCAA 59.402 34.615 0.00 0.00 0.00 3.53
4956 19046 7.283580 TCCGTTTTATATTTCCGTTCATCCAAT 59.716 33.333 0.00 0.00 0.00 3.16
4957 19047 7.918562 CCGTTTTATATTTCCGTTCATCCAATT 59.081 33.333 0.00 0.00 0.00 2.32
4958 19048 9.296400 CGTTTTATATTTCCGTTCATCCAATTT 57.704 29.630 0.00 0.00 0.00 1.82
4960 19050 9.509855 TTTTATATTTCCGTTCATCCAATTTCG 57.490 29.630 0.00 0.00 0.00 3.46
4961 19051 6.693315 ATATTTCCGTTCATCCAATTTCGT 57.307 33.333 0.00 0.00 0.00 3.85
4962 19052 4.839668 TTTCCGTTCATCCAATTTCGTT 57.160 36.364 0.00 0.00 0.00 3.85
4963 19053 3.822594 TCCGTTCATCCAATTTCGTTG 57.177 42.857 0.00 0.00 37.57 4.10
4964 19054 3.142951 TCCGTTCATCCAATTTCGTTGT 58.857 40.909 0.00 0.00 36.01 3.32
4965 19055 3.566322 TCCGTTCATCCAATTTCGTTGTT 59.434 39.130 0.00 0.00 36.01 2.83
4966 19056 3.668191 CCGTTCATCCAATTTCGTTGTTG 59.332 43.478 0.00 0.00 36.01 3.33
4967 19057 3.119463 CGTTCATCCAATTTCGTTGTTGC 59.881 43.478 0.00 0.00 36.01 4.17
4968 19058 4.298332 GTTCATCCAATTTCGTTGTTGCT 58.702 39.130 0.00 0.00 36.01 3.91
4969 19059 4.582701 TCATCCAATTTCGTTGTTGCTT 57.417 36.364 0.00 0.00 36.01 3.91
4970 19060 4.545610 TCATCCAATTTCGTTGTTGCTTC 58.454 39.130 0.00 0.00 36.01 3.86
4971 19061 4.037327 TCATCCAATTTCGTTGTTGCTTCA 59.963 37.500 0.00 0.00 36.01 3.02
4972 19062 4.582701 TCCAATTTCGTTGTTGCTTCAT 57.417 36.364 0.00 0.00 36.01 2.57
4973 19063 4.942852 TCCAATTTCGTTGTTGCTTCATT 58.057 34.783 0.00 0.00 36.01 2.57
4974 19064 5.355596 TCCAATTTCGTTGTTGCTTCATTT 58.644 33.333 0.00 0.00 36.01 2.32
4975 19065 5.233902 TCCAATTTCGTTGTTGCTTCATTTG 59.766 36.000 0.00 0.00 36.01 2.32
4976 19066 5.006552 CCAATTTCGTTGTTGCTTCATTTGT 59.993 36.000 0.00 0.00 36.01 2.83
4977 19067 5.640218 ATTTCGTTGTTGCTTCATTTGTG 57.360 34.783 0.00 0.00 0.00 3.33
4978 19068 2.458951 TCGTTGTTGCTTCATTTGTGC 58.541 42.857 0.00 0.00 0.00 4.57
4979 19069 2.159324 TCGTTGTTGCTTCATTTGTGCA 60.159 40.909 0.00 0.00 34.69 4.57
4980 19070 2.034675 CGTTGTTGCTTCATTTGTGCAC 60.035 45.455 10.75 10.75 36.37 4.57
4981 19071 1.837648 TGTTGCTTCATTTGTGCACG 58.162 45.000 13.13 0.00 36.37 5.34
4982 19072 1.133982 TGTTGCTTCATTTGTGCACGT 59.866 42.857 13.13 0.00 36.37 4.49
4983 19073 2.356069 TGTTGCTTCATTTGTGCACGTA 59.644 40.909 13.13 2.38 36.37 3.57
4984 19074 2.967459 TGCTTCATTTGTGCACGTAG 57.033 45.000 13.13 2.14 0.00 3.51
4986 19076 2.616376 TGCTTCATTTGTGCACGTAGTT 59.384 40.909 13.13 0.00 41.61 2.24
4987 19077 3.066064 TGCTTCATTTGTGCACGTAGTTT 59.934 39.130 13.13 0.00 41.61 2.66
4988 19078 3.421888 GCTTCATTTGTGCACGTAGTTTG 59.578 43.478 13.13 4.20 41.61 2.93
4989 19079 3.617540 TCATTTGTGCACGTAGTTTGG 57.382 42.857 13.13 0.00 41.61 3.28
4990 19080 2.946329 TCATTTGTGCACGTAGTTTGGT 59.054 40.909 13.13 0.00 41.61 3.67
4991 19081 4.127907 TCATTTGTGCACGTAGTTTGGTA 58.872 39.130 13.13 0.00 41.61 3.25
4992 19082 4.212425 TCATTTGTGCACGTAGTTTGGTAG 59.788 41.667 13.13 0.00 41.61 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.202976 AGAGGCAGCCATTTCAACTGT 60.203 47.619 15.80 0.00 33.87 3.55
91 92 5.238432 TCACTGCACCAAACATAAGTAACAG 59.762 40.000 0.00 0.00 0.00 3.16
147 148 9.542462 TTGACAAGAGCAATGTAATAGGTATAC 57.458 33.333 0.00 0.00 0.00 1.47
154 155 7.273164 CGCAAATTTGACAAGAGCAATGTAATA 59.727 33.333 22.31 0.00 0.00 0.98
424 436 0.177373 ACGCGAAGAATACCCCTTCC 59.823 55.000 15.93 0.00 37.36 3.46
485 497 2.887152 CAAACTTAAACCTGAGCAGCCT 59.113 45.455 0.00 0.00 0.00 4.58
828 2215 8.922058 AATAAGAAAGCAGAGTATTGCAAATG 57.078 30.769 1.71 0.00 46.47 2.32
944 2595 6.296026 TGGTATATCTGTGAAAGGGCAATAC 58.704 40.000 0.00 0.00 0.00 1.89
1099 2751 6.941436 GGGATGCTAGAAAGAATCATCAGAAT 59.059 38.462 0.00 0.00 39.34 2.40
1170 2822 1.695597 ATCTTCTGGAGCCAGGGGG 60.696 63.158 16.06 7.19 43.75 5.40
1209 2861 1.263356 TAACAGGGGTGAGAACCTCG 58.737 55.000 0.00 0.00 34.80 4.63
1574 3231 6.875195 CACAGAAAAATAATGTCATTGGGCTT 59.125 34.615 8.39 0.00 0.00 4.35
2045 3993 6.125029 AGATCACTTAAATTCATCCACCAGG 58.875 40.000 0.00 0.00 0.00 4.45
2208 4156 6.866480 AGACAGAAGAAAAAGAAATGCAACA 58.134 32.000 0.00 0.00 0.00 3.33
2256 4204 8.435430 CCATATGAGCGTGTTAACATAACTATG 58.565 37.037 12.26 13.01 39.55 2.23
2380 7753 7.733773 TTGGTACAGATATGAGGGTATATGG 57.266 40.000 0.00 0.00 42.39 2.74
2444 7817 7.063934 ACTGCTAGATCTCATGATTTGATGA 57.936 36.000 0.00 0.00 32.72 2.92
2546 7950 5.545658 TTAAAGATCTCAATTGTGCGTCC 57.454 39.130 5.13 0.00 0.00 4.79
2560 7964 9.118236 GGCATATTTCTTGCGTAATTAAAGATC 57.882 33.333 0.13 0.00 41.07 2.75
2584 8025 6.700960 TGCAATGCACATTAATAATTAGTGGC 59.299 34.615 2.72 2.46 31.71 5.01
2759 8201 9.784680 TTCAAATAAAGATGTACTAGAGTCGAC 57.215 33.333 7.70 7.70 0.00 4.20
2862 8724 6.376299 TCATTTTCATCATCCAAGTCCTTGAG 59.624 38.462 8.59 0.00 42.93 3.02
3000 8863 3.498397 TGAATCACGAGACAAGAAAAGGC 59.502 43.478 0.00 0.00 0.00 4.35
3151 9025 5.446143 ACAATAAAGCGTCAACCAAATGA 57.554 34.783 0.00 0.00 0.00 2.57
3185 9059 4.048970 ACACTAGCTTGGTAGGAAGAGA 57.951 45.455 10.93 0.00 0.00 3.10
3316 9190 1.213430 TGCATGCTGGATGATTCTCCA 59.787 47.619 20.33 0.00 43.09 3.86
3358 9232 3.923017 AACTTTCATGCCAGCAGTTAC 57.077 42.857 0.00 0.00 0.00 2.50
3398 9273 5.862323 ACGAAAATGCTGCGGTATATAGTAG 59.138 40.000 0.00 0.00 0.00 2.57
3504 11831 9.202273 TGTAAAATTGGTCAAACATAGAAATGC 57.798 29.630 0.00 0.00 36.50 3.56
3739 12180 6.691508 CAGTAGCTACATATATGACTTGGCA 58.308 40.000 25.28 0.00 0.00 4.92
3746 12187 7.215719 AGAAACGCAGTAGCTACATATATGA 57.784 36.000 25.28 2.59 45.00 2.15
3782 12224 1.478510 TCCCAAGAGCGAGAATGAGTC 59.521 52.381 0.00 0.00 0.00 3.36
3960 12431 3.065510 TCGTCTTCACTATACTGCTCTGC 59.934 47.826 0.00 0.00 0.00 4.26
3996 12467 7.711339 AGAAAATGACGGTCCTTTCATATCTAC 59.289 37.037 23.57 6.01 31.61 2.59
4005 12480 2.955660 TGCAAGAAAATGACGGTCCTTT 59.044 40.909 5.55 5.63 0.00 3.11
4011 12486 2.043411 CAACGTGCAAGAAAATGACGG 58.957 47.619 6.65 0.00 34.36 4.79
4028 12503 5.539582 TCATACGTGCTGGTTAATTCAAC 57.460 39.130 0.00 0.00 36.32 3.18
4029 12504 6.597672 AGATTCATACGTGCTGGTTAATTCAA 59.402 34.615 0.00 0.00 0.00 2.69
4036 12512 4.323417 TCAAAGATTCATACGTGCTGGTT 58.677 39.130 0.00 0.00 0.00 3.67
4038 12514 4.631377 TCTTCAAAGATTCATACGTGCTGG 59.369 41.667 0.00 0.00 0.00 4.85
4073 12550 0.394565 CCCTGCACCCTATACTGCTC 59.605 60.000 0.00 0.00 34.29 4.26
4074 12551 0.326618 ACCCTGCACCCTATACTGCT 60.327 55.000 0.00 0.00 34.29 4.24
4075 12552 0.546598 AACCCTGCACCCTATACTGC 59.453 55.000 0.00 0.00 0.00 4.40
4076 12553 1.837439 TCAACCCTGCACCCTATACTG 59.163 52.381 0.00 0.00 0.00 2.74
4077 12554 2.263895 TCAACCCTGCACCCTATACT 57.736 50.000 0.00 0.00 0.00 2.12
4078 12555 2.438021 TCATCAACCCTGCACCCTATAC 59.562 50.000 0.00 0.00 0.00 1.47
4130 12632 3.002791 CCGCTCTGCACTTCAAAATCTA 58.997 45.455 0.00 0.00 0.00 1.98
4164 12666 6.014840 CCAGTCTTAAGGTCCAGTTACACTAA 60.015 42.308 1.85 0.00 0.00 2.24
4202 12708 5.163258 ACAATGATGATGAGACCTTCTACCC 60.163 44.000 0.00 0.00 0.00 3.69
4240 12746 5.413309 AGAATCACTCCCAAAGACTACAG 57.587 43.478 0.00 0.00 0.00 2.74
4392 16185 5.659079 ACTTCCAATTTGGGTGAAACACTAA 59.341 36.000 15.37 0.00 44.23 2.24
4394 16187 4.030216 ACTTCCAATTTGGGTGAAACACT 58.970 39.130 15.37 0.00 44.23 3.55
4395 16188 4.119136 CACTTCCAATTTGGGTGAAACAC 58.881 43.478 15.37 0.00 44.11 3.32
4396 16189 3.772025 ACACTTCCAATTTGGGTGAAACA 59.228 39.130 23.49 0.25 39.98 2.83
4427 17475 8.406297 GGCCTCTAGTTCAAACCTATTTAAATG 58.594 37.037 11.05 0.00 0.00 2.32
4488 17536 1.609072 GTGAAGGCCAGGAAAGTGAAC 59.391 52.381 5.01 0.00 0.00 3.18
4536 17584 5.042593 CAGCTAGTTAGATGAAGCAGTCAG 58.957 45.833 0.00 0.00 41.99 3.51
4586 17640 4.448210 TCCGTTTACTTATGGATGAAGCC 58.552 43.478 0.00 0.00 0.00 4.35
4589 17643 6.040054 TCGATCTCCGTTTACTTATGGATGAA 59.960 38.462 0.00 0.00 39.75 2.57
4593 17647 5.840243 TTCGATCTCCGTTTACTTATGGA 57.160 39.130 0.00 0.00 39.75 3.41
4595 17649 5.514204 ACGTTTCGATCTCCGTTTACTTATG 59.486 40.000 0.00 0.00 39.75 1.90
4614 18565 6.147821 CCACTCTGATCTTCATGTTTACGTTT 59.852 38.462 0.00 0.00 0.00 3.60
4621 18572 2.625737 CGCCACTCTGATCTTCATGTT 58.374 47.619 0.00 0.00 0.00 2.71
4623 18574 0.935898 GCGCCACTCTGATCTTCATG 59.064 55.000 0.00 0.00 0.00 3.07
4624 18575 0.538584 TGCGCCACTCTGATCTTCAT 59.461 50.000 4.18 0.00 0.00 2.57
4626 18577 1.427592 GCTGCGCCACTCTGATCTTC 61.428 60.000 4.18 0.00 0.00 2.87
4627 18578 1.449246 GCTGCGCCACTCTGATCTT 60.449 57.895 4.18 0.00 0.00 2.40
4708 18796 5.287513 CCGAATTATAAAAGCAAACCCAACG 59.712 40.000 0.00 0.00 0.00 4.10
4719 18809 6.337356 ACAACAATGGGCCGAATTATAAAAG 58.663 36.000 0.00 0.00 0.00 2.27
4724 18814 3.513515 ACAACAACAATGGGCCGAATTAT 59.486 39.130 0.00 0.00 0.00 1.28
4727 18817 1.000731 CACAACAACAATGGGCCGAAT 59.999 47.619 0.00 0.00 0.00 3.34
4744 18834 3.005684 GGAAAATTCTGCATGTGGACACA 59.994 43.478 7.68 7.68 46.44 3.72
4745 18835 3.005684 TGGAAAATTCTGCATGTGGACAC 59.994 43.478 0.00 0.00 0.00 3.67
4747 18837 3.940209 TGGAAAATTCTGCATGTGGAC 57.060 42.857 0.00 0.00 0.00 4.02
4748 18838 3.006752 GGTTGGAAAATTCTGCATGTGGA 59.993 43.478 0.00 0.00 0.00 4.02
4750 18840 2.988493 CGGTTGGAAAATTCTGCATGTG 59.012 45.455 0.00 0.00 0.00 3.21
4751 18841 2.029110 CCGGTTGGAAAATTCTGCATGT 60.029 45.455 0.00 0.00 37.49 3.21
4752 18842 2.609350 CCGGTTGGAAAATTCTGCATG 58.391 47.619 0.00 0.00 37.49 4.06
4753 18843 1.550072 CCCGGTTGGAAAATTCTGCAT 59.450 47.619 0.00 0.00 37.49 3.96
4754 18844 0.965439 CCCGGTTGGAAAATTCTGCA 59.035 50.000 0.00 0.00 37.49 4.41
4756 18846 1.256812 AGCCCGGTTGGAAAATTCTG 58.743 50.000 0.00 0.00 37.49 3.02
4757 18847 1.893137 GAAGCCCGGTTGGAAAATTCT 59.107 47.619 0.00 0.00 37.49 2.40
4758 18848 1.402325 CGAAGCCCGGTTGGAAAATTC 60.402 52.381 0.00 0.00 37.49 2.17
4759 18849 0.601057 CGAAGCCCGGTTGGAAAATT 59.399 50.000 0.00 0.00 37.49 1.82
4766 18856 1.135689 CAGAAAATCGAAGCCCGGTTG 60.136 52.381 0.00 0.00 41.40 3.77
4768 18858 1.305930 GCAGAAAATCGAAGCCCGGT 61.306 55.000 0.00 0.00 39.14 5.28
4786 18876 1.587043 GAAGAAGAAACGGGCCCAGC 61.587 60.000 24.92 7.38 0.00 4.85
4822 18912 2.289565 CCAGAATAGAAGAAACGGGCC 58.710 52.381 0.00 0.00 0.00 5.80
4827 18917 8.012957 TCCTGATAGACCAGAATAGAAGAAAC 57.987 38.462 0.00 0.00 36.29 2.78
4839 18929 1.139853 GCCCAGTTCCTGATAGACCAG 59.860 57.143 0.00 0.00 32.44 4.00
4840 18930 1.204146 GCCCAGTTCCTGATAGACCA 58.796 55.000 0.00 0.00 32.44 4.02
4871 18961 6.869206 ATAACAAAGAAGACTGGCCTAGTA 57.131 37.500 3.32 0.00 40.53 1.82
4874 18964 7.773690 GGAAATATAACAAAGAAGACTGGCCTA 59.226 37.037 3.32 0.00 0.00 3.93
4910 19000 9.863845 AAACGGAAAGAAATTCTCAAAAGTTTA 57.136 25.926 0.00 0.00 38.18 2.01
4911 19001 8.771920 AAACGGAAAGAAATTCTCAAAAGTTT 57.228 26.923 0.00 3.82 38.18 2.66
4912 19002 8.771920 AAAACGGAAAGAAATTCTCAAAAGTT 57.228 26.923 0.00 0.00 38.18 2.66
4920 19010 9.783256 CGGAAATATAAAACGGAAAGAAATTCT 57.217 29.630 0.00 0.00 38.18 2.40
4921 19011 9.563898 ACGGAAATATAAAACGGAAAGAAATTC 57.436 29.630 0.00 0.00 37.31 2.17
4922 19012 9.917129 AACGGAAATATAAAACGGAAAGAAATT 57.083 25.926 0.00 0.00 0.00 1.82
4923 19013 9.563898 GAACGGAAATATAAAACGGAAAGAAAT 57.436 29.630 0.00 0.00 0.00 2.17
4924 19014 8.566260 TGAACGGAAATATAAAACGGAAAGAAA 58.434 29.630 0.00 0.00 0.00 2.52
4925 19015 8.097078 TGAACGGAAATATAAAACGGAAAGAA 57.903 30.769 0.00 0.00 0.00 2.52
4926 19016 7.670009 TGAACGGAAATATAAAACGGAAAGA 57.330 32.000 0.00 0.00 0.00 2.52
4927 19017 7.642586 GGATGAACGGAAATATAAAACGGAAAG 59.357 37.037 0.00 0.00 0.00 2.62
4928 19018 7.120873 TGGATGAACGGAAATATAAAACGGAAA 59.879 33.333 0.00 0.00 0.00 3.13
4929 19019 6.598457 TGGATGAACGGAAATATAAAACGGAA 59.402 34.615 0.00 0.00 0.00 4.30
4930 19020 6.114089 TGGATGAACGGAAATATAAAACGGA 58.886 36.000 0.00 0.00 0.00 4.69
4931 19021 6.366315 TGGATGAACGGAAATATAAAACGG 57.634 37.500 0.00 0.00 0.00 4.44
4932 19022 8.850454 AATTGGATGAACGGAAATATAAAACG 57.150 30.769 0.00 0.00 0.00 3.60
4934 19024 9.509855 CGAAATTGGATGAACGGAAATATAAAA 57.490 29.630 0.00 0.00 0.00 1.52
4935 19025 8.679100 ACGAAATTGGATGAACGGAAATATAAA 58.321 29.630 0.00 0.00 0.00 1.40
4936 19026 8.215926 ACGAAATTGGATGAACGGAAATATAA 57.784 30.769 0.00 0.00 0.00 0.98
4937 19027 7.795482 ACGAAATTGGATGAACGGAAATATA 57.205 32.000 0.00 0.00 0.00 0.86
4938 19028 6.693315 ACGAAATTGGATGAACGGAAATAT 57.307 33.333 0.00 0.00 0.00 1.28
4939 19029 6.072397 ACAACGAAATTGGATGAACGGAAATA 60.072 34.615 0.00 0.00 43.20 1.40
4940 19030 5.160641 CAACGAAATTGGATGAACGGAAAT 58.839 37.500 0.00 0.00 34.34 2.17
4941 19031 4.036971 ACAACGAAATTGGATGAACGGAAA 59.963 37.500 0.00 0.00 43.20 3.13
4942 19032 3.566322 ACAACGAAATTGGATGAACGGAA 59.434 39.130 0.00 0.00 43.20 4.30
4943 19033 3.142951 ACAACGAAATTGGATGAACGGA 58.857 40.909 0.00 0.00 43.20 4.69
4944 19034 3.552604 ACAACGAAATTGGATGAACGG 57.447 42.857 0.00 0.00 43.20 4.44
4945 19035 3.119463 GCAACAACGAAATTGGATGAACG 59.881 43.478 0.00 0.00 43.20 3.95
4946 19036 4.298332 AGCAACAACGAAATTGGATGAAC 58.702 39.130 0.00 0.00 43.20 3.18
4947 19037 4.582701 AGCAACAACGAAATTGGATGAA 57.417 36.364 0.00 0.00 43.20 2.57
4948 19038 4.037327 TGAAGCAACAACGAAATTGGATGA 59.963 37.500 0.00 0.00 43.20 2.92
4949 19039 4.297510 TGAAGCAACAACGAAATTGGATG 58.702 39.130 0.00 0.00 43.20 3.51
4950 19040 4.582701 TGAAGCAACAACGAAATTGGAT 57.417 36.364 0.00 0.00 43.20 3.41
4951 19041 4.582701 ATGAAGCAACAACGAAATTGGA 57.417 36.364 0.00 0.00 43.20 3.53
4952 19042 5.006552 ACAAATGAAGCAACAACGAAATTGG 59.993 36.000 0.00 0.00 43.20 3.16
4953 19043 5.897518 CACAAATGAAGCAACAACGAAATTG 59.102 36.000 0.00 0.00 44.60 2.32
4954 19044 5.502220 GCACAAATGAAGCAACAACGAAATT 60.502 36.000 0.00 0.00 0.00 1.82
4955 19045 4.025813 GCACAAATGAAGCAACAACGAAAT 60.026 37.500 0.00 0.00 0.00 2.17
4956 19046 3.305629 GCACAAATGAAGCAACAACGAAA 59.694 39.130 0.00 0.00 0.00 3.46
4957 19047 2.857152 GCACAAATGAAGCAACAACGAA 59.143 40.909 0.00 0.00 0.00 3.85
4958 19048 2.159324 TGCACAAATGAAGCAACAACGA 60.159 40.909 0.00 0.00 34.97 3.85
4959 19049 2.034675 GTGCACAAATGAAGCAACAACG 60.035 45.455 13.17 0.00 40.35 4.10
4960 19050 2.034675 CGTGCACAAATGAAGCAACAAC 60.035 45.455 18.64 0.00 40.35 3.32
4961 19051 2.191802 CGTGCACAAATGAAGCAACAA 58.808 42.857 18.64 0.00 40.35 2.83
4962 19052 1.133982 ACGTGCACAAATGAAGCAACA 59.866 42.857 18.64 0.00 40.35 3.33
4963 19053 1.838913 ACGTGCACAAATGAAGCAAC 58.161 45.000 18.64 0.00 40.35 4.17
4964 19054 2.616376 ACTACGTGCACAAATGAAGCAA 59.384 40.909 18.64 0.00 40.35 3.91
4965 19055 2.217750 ACTACGTGCACAAATGAAGCA 58.782 42.857 18.64 0.00 35.63 3.91
4966 19056 2.969443 ACTACGTGCACAAATGAAGC 57.031 45.000 18.64 0.00 0.00 3.86
4967 19057 3.974401 CCAAACTACGTGCACAAATGAAG 59.026 43.478 18.64 6.60 0.00 3.02
4968 19058 3.378742 ACCAAACTACGTGCACAAATGAA 59.621 39.130 18.64 0.00 0.00 2.57
4969 19059 2.946329 ACCAAACTACGTGCACAAATGA 59.054 40.909 18.64 0.00 0.00 2.57
4970 19060 3.347958 ACCAAACTACGTGCACAAATG 57.652 42.857 18.64 2.44 0.00 2.32
4971 19061 4.742438 CTACCAAACTACGTGCACAAAT 57.258 40.909 18.64 3.95 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.