Multiple sequence alignment - TraesCS3D01G001800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G001800 chr3D 100.000 3590 0 0 1 3590 852468 856057 0.000000e+00 6630.0
1 TraesCS3D01G001800 chr3D 85.512 635 56 6 68 691 838606 839215 6.540000e-177 630.0
2 TraesCS3D01G001800 chr3D 77.324 441 87 12 1060 1492 37432297 37431862 7.700000e-62 248.0
3 TraesCS3D01G001800 chr3D 79.902 204 37 4 1060 1261 37670527 37670326 2.890000e-31 147.0
4 TraesCS3D01G001800 chr3A 95.210 2046 75 10 1548 3590 8700773 8698748 0.000000e+00 3214.0
5 TraesCS3D01G001800 chr3A 83.267 1506 222 15 442 1917 8739706 8738201 0.000000e+00 1358.0
6 TraesCS3D01G001800 chr3A 85.650 669 68 11 442 1100 8706643 8705993 0.000000e+00 678.0
7 TraesCS3D01G001800 chr3A 90.674 386 36 0 1089 1474 8701151 8700766 6.870000e-142 514.0
8 TraesCS3D01G001800 chr3A 80.578 623 113 7 2087 2705 8738046 8737428 1.170000e-129 473.0
9 TraesCS3D01G001800 chr3A 76.923 221 38 9 1052 1261 47387658 47387876 2.930000e-21 113.0
10 TraesCS3D01G001800 chr3B 73.040 523 117 19 1061 1562 59535446 59534927 2.870000e-36 163.0
11 TraesCS3D01G001800 chr3B 77.982 218 36 9 1053 1261 59646485 59646271 3.760000e-25 126.0
12 TraesCS3D01G001800 chr3B 77.670 206 35 9 1060 1261 60142300 60142102 8.140000e-22 115.0
13 TraesCS3D01G001800 chr6D 91.304 69 6 0 3425 3493 25656227 25656159 1.060000e-15 95.3
14 TraesCS3D01G001800 chr7B 88.732 71 8 0 3423 3493 161433776 161433846 1.780000e-13 87.9
15 TraesCS3D01G001800 chr5D 92.593 54 4 0 3440 3493 466559871 466559924 1.070000e-10 78.7
16 TraesCS3D01G001800 chr7D 84.722 72 11 0 1334 1405 41439923 41439852 4.970000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G001800 chr3D 852468 856057 3589 False 6630.0 6630 100.0000 1 3590 1 chr3D.!!$F2 3589
1 TraesCS3D01G001800 chr3D 838606 839215 609 False 630.0 630 85.5120 68 691 1 chr3D.!!$F1 623
2 TraesCS3D01G001800 chr3A 8698748 8701151 2403 True 1864.0 3214 92.9420 1089 3590 2 chr3A.!!$R2 2501
3 TraesCS3D01G001800 chr3A 8737428 8739706 2278 True 915.5 1358 81.9225 442 2705 2 chr3A.!!$R3 2263
4 TraesCS3D01G001800 chr3A 8705993 8706643 650 True 678.0 678 85.6500 442 1100 1 chr3A.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 869 0.035439 CTGGTCCGGCAATAGTTGGT 60.035 55.0 0.0 0.0 0.0 3.67 F
851 870 0.035820 TGGTCCGGCAATAGTTGGTC 60.036 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 2351 0.175760 CCCCAGACTGGTACGATGTG 59.824 60.0 20.24 2.11 35.17 3.21 R
2766 2828 0.249741 GCTGACTGGGTGTTGTACGT 60.250 55.0 0.00 0.00 0.00 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.919666 AATAGCGTGAATTGGTGTGC 57.080 45.000 0.00 0.00 0.00 4.57
32 33 2.113860 ATAGCGTGAATTGGTGTGCT 57.886 45.000 0.00 0.00 36.51 4.40
33 34 1.438651 TAGCGTGAATTGGTGTGCTC 58.561 50.000 0.00 0.00 34.08 4.26
34 35 1.210155 GCGTGAATTGGTGTGCTCC 59.790 57.895 0.00 0.00 0.00 4.70
35 36 1.875963 CGTGAATTGGTGTGCTCCC 59.124 57.895 0.00 0.00 0.00 4.30
36 37 0.888736 CGTGAATTGGTGTGCTCCCA 60.889 55.000 0.00 0.00 0.00 4.37
37 38 0.598065 GTGAATTGGTGTGCTCCCAC 59.402 55.000 0.00 0.00 42.40 4.61
45 46 1.985614 TGTGCTCCCACATGAGAGG 59.014 57.895 0.00 0.00 46.51 3.69
46 47 0.545071 TGTGCTCCCACATGAGAGGA 60.545 55.000 0.00 0.69 46.51 3.71
47 48 0.615331 GTGCTCCCACATGAGAGGAA 59.385 55.000 0.00 0.00 41.67 3.36
48 49 1.211457 GTGCTCCCACATGAGAGGAAT 59.789 52.381 0.00 0.00 41.67 3.01
49 50 1.918262 TGCTCCCACATGAGAGGAATT 59.082 47.619 0.00 0.00 34.11 2.17
50 51 3.114606 TGCTCCCACATGAGAGGAATTA 58.885 45.455 0.00 0.00 34.11 1.40
51 52 3.523157 TGCTCCCACATGAGAGGAATTAA 59.477 43.478 0.00 0.00 34.11 1.40
52 53 4.133078 GCTCCCACATGAGAGGAATTAAG 58.867 47.826 0.00 0.00 34.11 1.85
53 54 4.712476 CTCCCACATGAGAGGAATTAAGG 58.288 47.826 0.00 0.00 34.11 2.69
54 55 4.111577 TCCCACATGAGAGGAATTAAGGT 58.888 43.478 0.00 0.00 0.00 3.50
55 56 4.164221 TCCCACATGAGAGGAATTAAGGTC 59.836 45.833 0.00 0.00 0.00 3.85
56 57 4.122776 CCACATGAGAGGAATTAAGGTCG 58.877 47.826 0.00 0.00 0.00 4.79
57 58 4.122776 CACATGAGAGGAATTAAGGTCGG 58.877 47.826 0.00 0.00 0.00 4.79
58 59 4.030913 ACATGAGAGGAATTAAGGTCGGA 58.969 43.478 0.00 0.00 0.00 4.55
59 60 4.100189 ACATGAGAGGAATTAAGGTCGGAG 59.900 45.833 0.00 0.00 0.00 4.63
60 61 2.431057 TGAGAGGAATTAAGGTCGGAGC 59.569 50.000 0.00 0.00 0.00 4.70
61 62 1.763545 AGAGGAATTAAGGTCGGAGCC 59.236 52.381 3.13 0.00 0.00 4.70
62 63 1.763545 GAGGAATTAAGGTCGGAGCCT 59.236 52.381 3.13 0.00 41.41 4.58
63 64 1.486726 AGGAATTAAGGTCGGAGCCTG 59.513 52.381 3.13 0.00 39.17 4.85
64 65 1.209747 GGAATTAAGGTCGGAGCCTGT 59.790 52.381 3.13 0.00 39.17 4.00
65 66 2.280628 GAATTAAGGTCGGAGCCTGTG 58.719 52.381 3.13 0.00 39.17 3.66
66 67 0.541863 ATTAAGGTCGGAGCCTGTGG 59.458 55.000 3.13 0.00 39.17 4.17
70 71 4.394712 GTCGGAGCCTGTGGGTGG 62.395 72.222 0.00 0.00 31.55 4.61
79 80 0.392461 CCTGTGGGTGGGAATGTACG 60.392 60.000 0.00 0.00 0.00 3.67
93 94 5.220605 GGGAATGTACGAGTCAAGCAAATAC 60.221 44.000 0.00 0.00 0.00 1.89
95 96 6.408858 AATGTACGAGTCAAGCAAATACAG 57.591 37.500 0.00 0.00 0.00 2.74
98 99 5.576774 TGTACGAGTCAAGCAAATACAGATG 59.423 40.000 0.00 0.00 0.00 2.90
107 108 7.426456 GTCAAGCAAATACAGATGATTTACACG 59.574 37.037 0.00 0.00 0.00 4.49
109 110 5.353956 AGCAAATACAGATGATTTACACGCA 59.646 36.000 0.00 0.00 0.00 5.24
110 111 6.038603 AGCAAATACAGATGATTTACACGCAT 59.961 34.615 0.00 0.00 0.00 4.73
111 112 7.226523 AGCAAATACAGATGATTTACACGCATA 59.773 33.333 0.00 0.00 0.00 3.14
112 113 8.017373 GCAAATACAGATGATTTACACGCATAT 58.983 33.333 0.00 0.00 0.00 1.78
168 169 6.148948 CACTTGGATTCAACGATTAAAGCAA 58.851 36.000 0.00 0.00 0.00 3.91
172 173 4.970003 GGATTCAACGATTAAAGCAATCCG 59.030 41.667 0.00 0.00 40.07 4.18
187 188 2.855963 CAATCCGATTCAAACTGCATGC 59.144 45.455 11.82 11.82 0.00 4.06
197 198 2.110901 AACTGCATGCTTGGAGAGAG 57.889 50.000 24.79 7.56 43.52 3.20
215 216 7.179338 TGGAGAGAGAAGCTAGAAACTGTTTAT 59.821 37.037 5.64 5.66 0.00 1.40
252 253 4.277423 GGTTAATTGGTTATCCATGTCCGG 59.723 45.833 0.00 0.00 43.91 5.14
263 264 0.179111 CATGTCCGGCTCGTACATGT 60.179 55.000 19.89 2.69 43.45 3.21
264 265 0.535335 ATGTCCGGCTCGTACATGTT 59.465 50.000 2.30 0.00 32.74 2.71
278 279 5.301045 TCGTACATGTTAAGTGGCTAGCTAT 59.699 40.000 15.72 0.00 0.00 2.97
287 288 3.231818 AGTGGCTAGCTATTCACCGTAT 58.768 45.455 15.72 0.00 0.00 3.06
288 289 3.256136 AGTGGCTAGCTATTCACCGTATC 59.744 47.826 15.72 0.00 0.00 2.24
289 290 2.228103 TGGCTAGCTATTCACCGTATCG 59.772 50.000 15.72 0.00 0.00 2.92
305 310 2.100879 ATCGGATTGCTAGTCGGCCC 62.101 60.000 0.00 0.00 0.00 5.80
307 312 2.967615 GATTGCTAGTCGGCCCGC 60.968 66.667 0.00 0.00 0.00 6.13
317 322 1.755395 TCGGCCCGCTTAGCTTCTA 60.755 57.895 0.00 0.00 0.00 2.10
324 329 5.051153 GGCCCGCTTAGCTTCTATATAATC 58.949 45.833 1.76 0.00 0.00 1.75
329 334 6.703607 CCGCTTAGCTTCTATATAATCCCATG 59.296 42.308 1.76 0.00 0.00 3.66
330 335 7.268586 CGCTTAGCTTCTATATAATCCCATGT 58.731 38.462 1.76 0.00 0.00 3.21
331 336 8.414003 CGCTTAGCTTCTATATAATCCCATGTA 58.586 37.037 1.76 0.00 0.00 2.29
548 560 2.893398 GGCGTCCTTCATCCGAGT 59.107 61.111 0.00 0.00 0.00 4.18
549 561 1.218316 GGCGTCCTTCATCCGAGTT 59.782 57.895 0.00 0.00 0.00 3.01
570 582 1.662629 GAGCATGAGTTCCACATCGTG 59.337 52.381 0.00 0.00 35.88 4.35
580 592 1.896183 CACATCGTGGGCCACAACA 60.896 57.895 34.11 18.78 33.40 3.33
616 628 0.597637 CTACAGCGCCCACTATTCCG 60.598 60.000 2.29 0.00 0.00 4.30
677 689 3.175240 CGACTGCAGCTTCGACGG 61.175 66.667 18.98 0.00 37.43 4.79
700 712 2.662596 GGCACCTCACGTCCATCA 59.337 61.111 0.00 0.00 0.00 3.07
706 718 1.139734 CTCACGTCCATCACCCTCG 59.860 63.158 0.00 0.00 0.00 4.63
708 720 0.322726 TCACGTCCATCACCCTCGTA 60.323 55.000 0.00 0.00 33.49 3.43
732 744 1.226974 CACCGCCTACATCACCGAG 60.227 63.158 0.00 0.00 0.00 4.63
811 830 4.436998 CCGTGTGGGAGAGCGACC 62.437 72.222 0.00 0.00 38.47 4.79
843 862 2.047274 CACGTCTGGTCCGGCAAT 60.047 61.111 0.00 0.00 0.00 3.56
846 865 1.255667 ACGTCTGGTCCGGCAATAGT 61.256 55.000 0.00 0.00 0.00 2.12
850 869 0.035439 CTGGTCCGGCAATAGTTGGT 60.035 55.000 0.00 0.00 0.00 3.67
851 870 0.035820 TGGTCCGGCAATAGTTGGTC 60.036 55.000 0.00 0.00 0.00 4.02
858 877 0.727398 GCAATAGTTGGTCGCTGTCC 59.273 55.000 0.00 0.00 0.00 4.02
912 931 2.723746 GCATTTCGCGGCCATGAT 59.276 55.556 6.13 0.00 0.00 2.45
922 941 1.674057 GGCCATGATAGCCGCTACT 59.326 57.895 1.14 0.00 41.41 2.57
996 1018 1.008309 GGACTCTGCTATCGCCGAC 60.008 63.158 0.00 0.00 34.43 4.79
1012 1034 2.286833 GCCGACGATATGCAAAAGCTTA 59.713 45.455 0.00 0.00 0.00 3.09
1014 1036 4.457810 CCGACGATATGCAAAAGCTTATG 58.542 43.478 0.00 0.00 0.00 1.90
1017 1039 5.965334 CGACGATATGCAAAAGCTTATGTTT 59.035 36.000 0.00 0.00 0.00 2.83
1074 1096 2.660552 CTGCCGGACGTGACGTTT 60.661 61.111 13.44 0.00 41.37 3.60
1087 1109 4.336581 CGTTTGTCGTGGAGCAGA 57.663 55.556 0.00 0.00 34.52 4.26
1116 1138 2.501128 GCGCACAGGCTCATCCTA 59.499 61.111 0.30 0.00 45.52 2.94
1140 1162 4.953868 CGGTCACCGGTGTTCGCA 62.954 66.667 32.74 11.90 44.15 5.10
1152 1174 3.695606 TTCGCAGCCGAGCTCCTT 61.696 61.111 8.47 0.00 45.35 3.36
1267 1289 1.076024 AGCTGCCCATCAAAGGAAAGA 59.924 47.619 0.00 0.00 0.00 2.52
1269 1291 2.517959 CTGCCCATCAAAGGAAAGACA 58.482 47.619 0.00 0.00 0.00 3.41
1275 1297 5.564848 GCCCATCAAAGGAAAGACAACTAAC 60.565 44.000 0.00 0.00 0.00 2.34
1305 1342 1.687494 GCAAACAAAAACGTGCCGCA 61.687 50.000 0.00 0.00 0.00 5.69
1332 1369 1.002257 TGTGGACATGGCGCTTGAT 60.002 52.632 7.64 0.00 0.00 2.57
1344 1381 1.059994 GCTTGATCTGCTCGTTGCG 59.940 57.895 0.00 0.00 46.63 4.85
1371 1408 1.003331 CGCTACGACCTAGAGAAGCTG 60.003 57.143 0.00 0.00 0.00 4.24
1372 1409 1.335496 GCTACGACCTAGAGAAGCTGG 59.665 57.143 0.00 0.00 0.00 4.85
1407 1444 5.107683 CGAGAAGATATTGTCCGAAAGCATC 60.108 44.000 0.00 0.00 0.00 3.91
1425 1462 2.152699 CGACACCGCGTCTGTCATC 61.153 63.158 25.28 8.95 42.98 2.92
1428 1465 2.994995 ACCGCGTCTGTCATCCCA 60.995 61.111 4.92 0.00 0.00 4.37
1458 1495 2.125673 GTGCACGGCCGACATAGT 60.126 61.111 35.90 4.54 0.00 2.12
1467 1504 1.421410 GCCGACATAGTTGCCGTCAG 61.421 60.000 0.00 0.00 0.00 3.51
1470 1507 1.202256 CGACATAGTTGCCGTCAGCTA 60.202 52.381 0.00 0.00 44.23 3.32
1474 1511 2.124277 TAGTTGCCGTCAGCTAGAGA 57.876 50.000 0.00 0.00 44.23 3.10
1476 1513 0.458716 GTTGCCGTCAGCTAGAGACC 60.459 60.000 9.37 0.00 44.23 3.85
1500 1537 1.001974 TGCATTGAGTACTTGGCGTCT 59.998 47.619 0.00 0.00 0.00 4.18
1505 1542 1.281899 GAGTACTTGGCGTCTGATGC 58.718 55.000 13.40 13.40 0.00 3.91
1515 1552 0.713883 CGTCTGATGCCAACGTGTAC 59.286 55.000 0.00 0.00 0.00 2.90
1671 1720 2.813779 AACGGACTATGTCGACGTAC 57.186 50.000 13.48 3.85 31.55 3.67
1693 1742 3.680786 CGTCGGAGGTGGCTCACA 61.681 66.667 7.49 0.00 35.86 3.58
1854 1903 2.031068 CGTGTTCACCGAATTGTTGACA 59.969 45.455 0.00 0.00 0.00 3.58
1959 2008 4.156455 AGCTGAAGAAACCTTCAACTCA 57.844 40.909 8.89 0.00 46.48 3.41
1988 2037 3.768468 TTCTTGTGGGTTTTCGTGTTC 57.232 42.857 0.00 0.00 0.00 3.18
2230 2288 1.959899 GATTCACGCACACAGCCTCG 61.960 60.000 0.00 0.00 41.38 4.63
2293 2351 1.920835 ACCAACCAGGAGGAGGAGC 60.921 63.158 9.36 0.00 41.22 4.70
2304 2362 0.324368 AGGAGGAGCACATCGTACCA 60.324 55.000 0.00 0.00 0.00 3.25
2356 2414 0.924090 GGTGCTTCGCTTCATCTACG 59.076 55.000 0.00 0.00 0.00 3.51
2669 2731 6.253512 GCATGCACCAGCTAAATTTTAGTTAC 59.746 38.462 14.21 2.13 42.74 2.50
2720 2782 7.609918 GCTAAATGGATTTATTTTTGGGGTGTT 59.390 33.333 0.00 0.00 32.36 3.32
2721 2783 9.513906 CTAAATGGATTTATTTTTGGGGTGTTT 57.486 29.630 0.00 0.00 32.36 2.83
2722 2784 8.774546 AAATGGATTTATTTTTGGGGTGTTTT 57.225 26.923 0.00 0.00 0.00 2.43
2724 2786 7.573968 TGGATTTATTTTTGGGGTGTTTTTG 57.426 32.000 0.00 0.00 0.00 2.44
2725 2787 7.346471 TGGATTTATTTTTGGGGTGTTTTTGA 58.654 30.769 0.00 0.00 0.00 2.69
2726 2788 7.500559 TGGATTTATTTTTGGGGTGTTTTTGAG 59.499 33.333 0.00 0.00 0.00 3.02
2728 2790 3.636153 TTTTTGGGGTGTTTTTGAGGG 57.364 42.857 0.00 0.00 0.00 4.30
2729 2791 1.501582 TTTGGGGTGTTTTTGAGGGG 58.498 50.000 0.00 0.00 0.00 4.79
2730 2792 0.637195 TTGGGGTGTTTTTGAGGGGA 59.363 50.000 0.00 0.00 0.00 4.81
2731 2793 0.637195 TGGGGTGTTTTTGAGGGGAA 59.363 50.000 0.00 0.00 0.00 3.97
2733 2795 2.120312 GGGGTGTTTTTGAGGGGAAAA 58.880 47.619 0.00 0.00 0.00 2.29
2734 2796 2.506231 GGGGTGTTTTTGAGGGGAAAAA 59.494 45.455 0.00 0.00 33.42 1.94
2766 2828 2.146342 GTCAGCTAGAGCAAAACAGCA 58.854 47.619 4.01 0.00 45.16 4.41
2849 2912 5.008415 TGCTAGACAGTAAGGCGTATAAGTC 59.992 44.000 0.00 0.00 0.00 3.01
2853 2916 4.995124 ACAGTAAGGCGTATAAGTCTGTG 58.005 43.478 0.00 0.00 34.36 3.66
2865 2928 7.482113 GCGTATAAGTCTGTGTGCTATATACAG 59.518 40.741 0.00 0.00 46.45 2.74
2928 2992 2.247311 ATTGTTTTCGCATCGCAGAC 57.753 45.000 0.00 0.00 42.51 3.51
3027 3092 1.564348 CCCAGCCCAACTACCTATTGT 59.436 52.381 0.00 0.00 0.00 2.71
3099 3164 1.743252 GCCCTCTGCCAGTTCTTCG 60.743 63.158 0.00 0.00 0.00 3.79
3212 3277 5.869649 ACTATTCTTTTGGTTTTGTGCCT 57.130 34.783 0.00 0.00 0.00 4.75
3255 3320 4.090090 AGATCGTCTCTTCTTCCTTTCCA 58.910 43.478 0.00 0.00 0.00 3.53
3304 3369 9.301153 GAAATTATGTTATGCCTCGTTTTGATT 57.699 29.630 0.00 0.00 0.00 2.57
3309 3374 5.918011 TGTTATGCCTCGTTTTGATTCAAAC 59.082 36.000 11.30 6.51 32.79 2.93
3324 3389 6.507900 TGATTCAAACGGCTTACAAAATGAA 58.492 32.000 0.00 0.00 0.00 2.57
3352 3417 2.520260 GCTGGCTTGCCATAGGGG 60.520 66.667 15.21 4.21 40.85 4.79
3353 3418 3.060614 GCTGGCTTGCCATAGGGGA 62.061 63.158 15.21 0.00 40.01 4.81
3354 3419 1.150081 CTGGCTTGCCATAGGGGAG 59.850 63.158 15.21 0.00 40.01 4.30
3355 3420 1.619363 TGGCTTGCCATAGGGGAGT 60.619 57.895 10.65 0.00 40.01 3.85
3389 3454 4.704833 GCTCCTCACCTGGCGCAA 62.705 66.667 10.83 0.00 37.72 4.85
3405 3470 1.782028 GCAAAAAGCTCCACGACGGT 61.782 55.000 0.00 0.00 41.15 4.83
3407 3472 0.179067 AAAAAGCTCCACGACGGTCA 60.179 50.000 9.10 0.00 35.57 4.02
3410 3475 0.670546 AAGCTCCACGACGGTCATTG 60.671 55.000 9.10 4.47 35.57 2.82
3435 3500 0.674895 CGGCCACTTAGAAGCTGCTT 60.675 55.000 15.92 15.92 0.00 3.91
3436 3501 0.807496 GGCCACTTAGAAGCTGCTTG 59.193 55.000 21.25 7.78 0.00 4.01
3489 3554 7.194278 GGATGAAGATGAACATTGAGTCATTG 58.806 38.462 12.41 12.41 0.00 2.82
3525 3590 2.156891 CACGATCACACCTGTAAAACCG 59.843 50.000 0.00 0.00 0.00 4.44
3540 3605 3.411351 CCGACGCAAACCAGACCG 61.411 66.667 0.00 0.00 0.00 4.79
3542 3607 2.029964 GACGCAAACCAGACCGGA 59.970 61.111 9.46 0.00 38.63 5.14
3546 3611 1.234615 CGCAAACCAGACCGGACAAT 61.235 55.000 9.46 0.00 38.63 2.71
3585 3650 1.497991 TTGTTGAGACGGCGAAAGAG 58.502 50.000 16.62 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.987220 GCACACCAATTCACGCTATTTTT 59.013 39.130 0.00 0.00 0.00 1.94
10 11 3.255642 AGCACACCAATTCACGCTATTTT 59.744 39.130 0.00 0.00 0.00 1.82
11 12 2.819608 AGCACACCAATTCACGCTATTT 59.180 40.909 0.00 0.00 0.00 1.40
12 13 2.420022 GAGCACACCAATTCACGCTATT 59.580 45.455 0.00 0.00 0.00 1.73
13 14 2.009774 GAGCACACCAATTCACGCTAT 58.990 47.619 0.00 0.00 0.00 2.97
14 15 1.438651 GAGCACACCAATTCACGCTA 58.561 50.000 0.00 0.00 0.00 4.26
15 16 1.237285 GGAGCACACCAATTCACGCT 61.237 55.000 0.00 0.00 0.00 5.07
16 17 1.210155 GGAGCACACCAATTCACGC 59.790 57.895 0.00 0.00 0.00 5.34
17 18 0.888736 TGGGAGCACACCAATTCACG 60.889 55.000 0.00 0.00 34.44 4.35
18 19 0.598065 GTGGGAGCACACCAATTCAC 59.402 55.000 0.00 0.00 40.24 3.18
19 20 0.184692 TGTGGGAGCACACCAATTCA 59.815 50.000 0.00 0.00 40.24 2.57
20 21 1.203052 CATGTGGGAGCACACCAATTC 59.797 52.381 0.00 0.00 40.24 2.17
21 22 1.203038 TCATGTGGGAGCACACCAATT 60.203 47.619 0.00 0.00 40.24 2.32
22 23 0.405198 TCATGTGGGAGCACACCAAT 59.595 50.000 0.00 0.00 40.24 3.16
23 24 0.250858 CTCATGTGGGAGCACACCAA 60.251 55.000 0.00 0.00 40.24 3.67
24 25 1.126948 TCTCATGTGGGAGCACACCA 61.127 55.000 0.00 0.00 40.62 4.17
25 26 0.392193 CTCTCATGTGGGAGCACACC 60.392 60.000 0.00 0.00 40.62 4.16
26 27 0.392193 CCTCTCATGTGGGAGCACAC 60.392 60.000 4.32 0.00 41.68 3.82
27 28 0.545071 TCCTCTCATGTGGGAGCACA 60.545 55.000 4.32 0.00 39.62 4.57
28 29 0.615331 TTCCTCTCATGTGGGAGCAC 59.385 55.000 4.32 0.00 34.84 4.40
29 30 1.588239 ATTCCTCTCATGTGGGAGCA 58.412 50.000 4.32 0.00 34.84 4.26
30 31 2.725221 AATTCCTCTCATGTGGGAGC 57.275 50.000 4.32 0.00 34.84 4.70
31 32 4.164988 ACCTTAATTCCTCTCATGTGGGAG 59.835 45.833 2.83 2.83 36.21 4.30
32 33 4.111577 ACCTTAATTCCTCTCATGTGGGA 58.888 43.478 0.00 0.00 0.00 4.37
33 34 4.455606 GACCTTAATTCCTCTCATGTGGG 58.544 47.826 0.00 0.00 0.00 4.61
34 35 4.122776 CGACCTTAATTCCTCTCATGTGG 58.877 47.826 0.00 0.00 0.00 4.17
35 36 4.122776 CCGACCTTAATTCCTCTCATGTG 58.877 47.826 0.00 0.00 0.00 3.21
36 37 4.030913 TCCGACCTTAATTCCTCTCATGT 58.969 43.478 0.00 0.00 0.00 3.21
37 38 4.626042 CTCCGACCTTAATTCCTCTCATG 58.374 47.826 0.00 0.00 0.00 3.07
38 39 3.070302 GCTCCGACCTTAATTCCTCTCAT 59.930 47.826 0.00 0.00 0.00 2.90
39 40 2.431057 GCTCCGACCTTAATTCCTCTCA 59.569 50.000 0.00 0.00 0.00 3.27
40 41 2.224090 GGCTCCGACCTTAATTCCTCTC 60.224 54.545 0.00 0.00 0.00 3.20
41 42 1.763545 GGCTCCGACCTTAATTCCTCT 59.236 52.381 0.00 0.00 0.00 3.69
42 43 1.763545 AGGCTCCGACCTTAATTCCTC 59.236 52.381 0.00 0.00 36.28 3.71
43 44 1.486726 CAGGCTCCGACCTTAATTCCT 59.513 52.381 0.00 0.00 38.26 3.36
44 45 1.209747 ACAGGCTCCGACCTTAATTCC 59.790 52.381 0.00 0.00 38.26 3.01
45 46 2.280628 CACAGGCTCCGACCTTAATTC 58.719 52.381 0.00 0.00 38.26 2.17
46 47 1.065418 CCACAGGCTCCGACCTTAATT 60.065 52.381 0.00 0.00 38.26 1.40
47 48 0.541863 CCACAGGCTCCGACCTTAAT 59.458 55.000 0.00 0.00 38.26 1.40
48 49 1.550130 CCCACAGGCTCCGACCTTAA 61.550 60.000 0.00 0.00 38.26 1.85
49 50 1.987855 CCCACAGGCTCCGACCTTA 60.988 63.158 0.00 0.00 38.26 2.69
50 51 3.322466 CCCACAGGCTCCGACCTT 61.322 66.667 0.00 0.00 38.26 3.50
51 52 4.640690 ACCCACAGGCTCCGACCT 62.641 66.667 0.00 0.00 42.30 3.85
52 53 4.394712 CACCCACAGGCTCCGACC 62.395 72.222 0.00 0.00 36.11 4.79
53 54 4.394712 CCACCCACAGGCTCCGAC 62.395 72.222 0.00 0.00 36.11 4.79
56 57 2.616458 ATTCCCACCCACAGGCTCC 61.616 63.158 0.00 0.00 36.11 4.70
57 58 1.379044 CATTCCCACCCACAGGCTC 60.379 63.158 0.00 0.00 36.11 4.70
58 59 0.844661 TACATTCCCACCCACAGGCT 60.845 55.000 0.00 0.00 36.11 4.58
59 60 0.679960 GTACATTCCCACCCACAGGC 60.680 60.000 0.00 0.00 36.11 4.85
60 61 0.392461 CGTACATTCCCACCCACAGG 60.392 60.000 0.00 0.00 40.04 4.00
61 62 0.611200 TCGTACATTCCCACCCACAG 59.389 55.000 0.00 0.00 0.00 3.66
62 63 0.611200 CTCGTACATTCCCACCCACA 59.389 55.000 0.00 0.00 0.00 4.17
63 64 0.611714 ACTCGTACATTCCCACCCAC 59.388 55.000 0.00 0.00 0.00 4.61
64 65 0.899720 GACTCGTACATTCCCACCCA 59.100 55.000 0.00 0.00 0.00 4.51
65 66 0.899720 TGACTCGTACATTCCCACCC 59.100 55.000 0.00 0.00 0.00 4.61
66 67 2.618053 CTTGACTCGTACATTCCCACC 58.382 52.381 0.00 0.00 0.00 4.61
70 71 4.946784 ATTTGCTTGACTCGTACATTCC 57.053 40.909 0.00 0.00 0.00 3.01
79 80 8.668353 TGTAAATCATCTGTATTTGCTTGACTC 58.332 33.333 0.00 0.00 32.26 3.36
168 169 2.372264 AGCATGCAGTTTGAATCGGAT 58.628 42.857 21.98 0.00 0.00 4.18
172 173 3.192001 TCTCCAAGCATGCAGTTTGAATC 59.808 43.478 21.98 0.00 40.48 2.52
187 188 5.047377 ACAGTTTCTAGCTTCTCTCTCCAAG 60.047 44.000 0.00 0.00 0.00 3.61
237 238 0.600255 CGAGCCGGACATGGATAACC 60.600 60.000 5.05 0.00 0.00 2.85
238 239 0.104304 ACGAGCCGGACATGGATAAC 59.896 55.000 5.05 0.00 0.00 1.89
239 240 1.338973 GTACGAGCCGGACATGGATAA 59.661 52.381 5.05 0.00 40.85 1.75
240 241 0.956633 GTACGAGCCGGACATGGATA 59.043 55.000 5.05 0.00 40.85 2.59
241 242 1.040893 TGTACGAGCCGGACATGGAT 61.041 55.000 5.05 0.00 46.30 3.41
252 253 2.618053 AGCCACTTAACATGTACGAGC 58.382 47.619 0.00 0.00 0.00 5.03
263 264 3.449737 ACGGTGAATAGCTAGCCACTTAA 59.550 43.478 20.69 0.00 0.00 1.85
264 265 3.028850 ACGGTGAATAGCTAGCCACTTA 58.971 45.455 20.69 0.00 0.00 2.24
287 288 2.792947 GGGCCGACTAGCAATCCGA 61.793 63.158 0.00 0.00 0.00 4.55
288 289 2.280186 GGGCCGACTAGCAATCCG 60.280 66.667 0.00 0.00 0.00 4.18
289 290 2.280186 CGGGCCGACTAGCAATCC 60.280 66.667 24.41 0.00 0.00 3.01
290 291 2.925162 AAGCGGGCCGACTAGCAATC 62.925 60.000 33.44 8.38 0.00 2.67
294 299 2.027751 CTAAGCGGGCCGACTAGC 59.972 66.667 33.44 11.81 0.00 3.42
305 310 7.268586 ACATGGGATTATATAGAAGCTAAGCG 58.731 38.462 0.00 0.00 0.00 4.68
324 329 9.231297 CAAGGGAAATACTACATTATACATGGG 57.769 37.037 0.00 0.00 0.00 4.00
332 337 9.688091 TGCAATTACAAGGGAAATACTACATTA 57.312 29.630 0.00 0.00 0.00 1.90
333 338 8.588290 TGCAATTACAAGGGAAATACTACATT 57.412 30.769 0.00 0.00 0.00 2.71
334 339 8.052748 TCTGCAATTACAAGGGAAATACTACAT 58.947 33.333 0.00 0.00 0.00 2.29
335 340 7.398829 TCTGCAATTACAAGGGAAATACTACA 58.601 34.615 0.00 0.00 0.00 2.74
336 341 7.859325 TCTGCAATTACAAGGGAAATACTAC 57.141 36.000 0.00 0.00 0.00 2.73
337 342 8.871629 TTTCTGCAATTACAAGGGAAATACTA 57.128 30.769 0.00 0.00 0.00 1.82
338 343 7.669722 TCTTTCTGCAATTACAAGGGAAATACT 59.330 33.333 0.00 0.00 0.00 2.12
498 510 3.491652 GTCTCTTCTTGCGGCGCC 61.492 66.667 30.82 19.07 0.00 6.53
499 511 3.843240 CGTCTCTTCTTGCGGCGC 61.843 66.667 27.44 27.44 0.00 6.53
504 516 1.669115 TGCTGCCGTCTCTTCTTGC 60.669 57.895 0.00 0.00 0.00 4.01
541 553 2.419297 GGAACTCATGCTCAACTCGGAT 60.419 50.000 0.00 0.00 0.00 4.18
548 560 2.289631 ACGATGTGGAACTCATGCTCAA 60.290 45.455 0.00 0.00 43.02 3.02
549 561 1.276138 ACGATGTGGAACTCATGCTCA 59.724 47.619 0.00 0.00 43.02 4.26
598 610 1.324740 ACGGAATAGTGGGCGCTGTA 61.325 55.000 7.64 0.00 0.00 2.74
602 614 2.588034 GGACGGAATAGTGGGCGC 60.588 66.667 0.00 0.00 0.00 6.53
616 628 4.516195 GAAGGCGCCGGAGAGGAC 62.516 72.222 23.20 3.70 45.00 3.85
691 703 0.323178 AGTACGAGGGTGATGGACGT 60.323 55.000 0.00 0.00 40.23 4.34
693 705 0.179108 GCAGTACGAGGGTGATGGAC 60.179 60.000 0.00 0.00 0.00 4.02
696 708 0.817654 TGAGCAGTACGAGGGTGATG 59.182 55.000 0.00 0.00 0.00 3.07
700 712 2.341101 CGGTGAGCAGTACGAGGGT 61.341 63.158 0.00 0.00 0.00 4.34
744 756 4.355720 CTCAGGCTGGCCTTGGCA 62.356 66.667 15.73 0.40 45.70 4.92
811 830 0.034896 ACGTGGAAGGTGTAGGCTTG 59.965 55.000 0.00 0.00 31.22 4.01
843 862 4.201523 TGGGACAGCGACCAACTA 57.798 55.556 0.00 0.00 32.89 2.24
922 941 2.357034 GAGGCGGTCGTCTTGCAA 60.357 61.111 0.00 0.00 0.00 4.08
970 989 2.238521 GATAGCAGAGTCCTCCTCCTG 58.761 57.143 0.00 0.00 41.47 3.86
1012 1034 0.173708 GGCTCCGACGAGAGAAACAT 59.826 55.000 14.93 0.00 38.52 2.71
1014 1036 1.514443 CGGCTCCGACGAGAGAAAC 60.514 63.158 14.93 5.69 42.83 2.78
1017 1039 2.046604 TTCGGCTCCGACGAGAGA 60.047 61.111 10.93 0.00 46.39 3.10
1057 1079 2.660552 AAACGTCACGTCCGGCAG 60.661 61.111 1.67 0.00 39.99 4.85
1074 1096 2.596338 TCGGTCTGCTCCACGACA 60.596 61.111 0.00 0.00 31.88 4.35
1087 1109 4.148825 GTGCGCCTGGATCTCGGT 62.149 66.667 4.18 0.00 0.00 4.69
1140 1162 2.604686 TCACCAAGGAGCTCGGCT 60.605 61.111 7.83 0.00 43.88 5.52
1152 1174 2.457598 GTACCCTCTCTCATGTCACCA 58.542 52.381 0.00 0.00 0.00 4.17
1267 1289 1.328374 GCAACCACGTTCGTTAGTTGT 59.672 47.619 24.89 7.29 39.92 3.32
1269 1291 1.654317 TGCAACCACGTTCGTTAGTT 58.346 45.000 0.00 0.30 0.00 2.24
1275 1297 1.618861 TTTGTTTGCAACCACGTTCG 58.381 45.000 0.00 0.00 33.82 3.95
1305 1342 1.667830 CATGTCCACACGACGCCTT 60.668 57.895 0.00 0.00 45.23 4.35
1371 1408 1.817099 CTTCTCGCACATGAGCCCC 60.817 63.158 9.65 0.00 35.90 5.80
1372 1409 0.179062 ATCTTCTCGCACATGAGCCC 60.179 55.000 9.65 0.00 35.90 5.19
1412 1449 2.100631 GTTGGGATGACAGACGCGG 61.101 63.158 12.47 0.00 0.00 6.46
1413 1450 2.444624 CGTTGGGATGACAGACGCG 61.445 63.158 3.53 3.53 0.00 6.01
1428 1465 1.901464 GTGCACCCCCATCAACGTT 60.901 57.895 5.22 0.00 0.00 3.99
1439 1476 4.460683 TATGTCGGCCGTGCACCC 62.461 66.667 27.15 6.67 0.00 4.61
1452 1489 2.099921 CTCTAGCTGACGGCAACTATGT 59.900 50.000 9.39 0.00 44.79 2.29
1458 1495 0.612174 AGGTCTCTAGCTGACGGCAA 60.612 55.000 9.39 0.00 44.79 4.52
1467 1504 3.118811 ACTCAATGCAAGAGGTCTCTAGC 60.119 47.826 19.78 0.00 39.39 3.42
1470 1507 4.093011 AGTACTCAATGCAAGAGGTCTCT 58.907 43.478 19.78 11.08 42.75 3.10
1474 1511 3.679389 CCAAGTACTCAATGCAAGAGGT 58.321 45.455 19.78 10.46 37.43 3.85
1476 1513 2.094894 CGCCAAGTACTCAATGCAAGAG 59.905 50.000 15.63 15.63 39.04 2.85
1485 1522 1.404181 GCATCAGACGCCAAGTACTCA 60.404 52.381 0.00 0.00 0.00 3.41
1500 1537 2.030401 GGCGTACACGTTGGCATCA 61.030 57.895 3.44 0.00 42.22 3.07
1505 1542 0.165079 GACATTGGCGTACACGTTGG 59.835 55.000 3.44 0.00 42.22 3.77
1507 1544 1.529438 CTTGACATTGGCGTACACGTT 59.471 47.619 3.44 0.00 42.22 3.99
1510 1547 0.168128 GCCTTGACATTGGCGTACAC 59.832 55.000 4.54 0.00 39.71 2.90
1530 1567 2.452505 AGCTCCTTGTACTCCTCTGTC 58.547 52.381 0.00 0.00 0.00 3.51
1532 1569 4.142049 CCTTTAGCTCCTTGTACTCCTCTG 60.142 50.000 0.00 0.00 0.00 3.35
1533 1570 4.027437 CCTTTAGCTCCTTGTACTCCTCT 58.973 47.826 0.00 0.00 0.00 3.69
1671 1720 3.041940 GCCACCTCCGACGTGTTG 61.042 66.667 0.00 0.00 0.00 3.33
1693 1742 3.890147 GGGATCCTCAACTCGTGTATACT 59.110 47.826 12.58 0.00 0.00 2.12
1854 1903 1.115467 CACTAGCCGTTCCTGGATCT 58.885 55.000 0.00 0.00 0.00 2.75
1959 2008 3.884037 AACCCACAAGAATCACCTTCT 57.116 42.857 0.00 0.00 46.44 2.85
1988 2037 2.224233 ACATCATCTTCCTGGCTGATCG 60.224 50.000 0.00 0.00 0.00 3.69
2230 2288 2.813908 GGACCGTGTGGCGATGAC 60.814 66.667 0.00 0.00 44.77 3.06
2293 2351 0.175760 CCCCAGACTGGTACGATGTG 59.824 60.000 20.24 2.11 35.17 3.21
2304 2362 1.080498 TCAACCCTCATACCCCAGACT 59.920 52.381 0.00 0.00 0.00 3.24
2543 2601 1.070309 CGAGCTTCTTGCAGTTGTGAC 60.070 52.381 0.00 0.00 45.94 3.67
2669 2731 4.142556 ACCAAAAACAGTTGACCAGTTACG 60.143 41.667 0.00 0.00 0.00 3.18
2712 2774 0.637195 TTCCCCTCAAAAACACCCCA 59.363 50.000 0.00 0.00 0.00 4.96
2735 2797 3.744660 CTCTAGCTGACTGGGTGTTTTT 58.255 45.455 0.00 0.00 0.00 1.94
2736 2798 2.551071 GCTCTAGCTGACTGGGTGTTTT 60.551 50.000 0.00 0.00 38.21 2.43
2737 2799 1.002544 GCTCTAGCTGACTGGGTGTTT 59.997 52.381 0.00 0.00 38.21 2.83
2740 2802 0.610174 TTGCTCTAGCTGACTGGGTG 59.390 55.000 0.00 0.00 42.66 4.61
2741 2803 1.352083 TTTGCTCTAGCTGACTGGGT 58.648 50.000 0.00 0.00 42.66 4.51
2742 2804 2.079925 GTTTTGCTCTAGCTGACTGGG 58.920 52.381 0.00 0.00 42.66 4.45
2743 2805 2.740981 CTGTTTTGCTCTAGCTGACTGG 59.259 50.000 0.00 0.00 42.66 4.00
2744 2806 2.159234 GCTGTTTTGCTCTAGCTGACTG 59.841 50.000 0.00 4.94 42.66 3.51
2745 2807 2.224378 TGCTGTTTTGCTCTAGCTGACT 60.224 45.455 0.00 0.00 42.66 3.41
2746 2808 2.096019 GTGCTGTTTTGCTCTAGCTGAC 60.096 50.000 0.00 0.55 42.66 3.51
2747 2809 2.146342 GTGCTGTTTTGCTCTAGCTGA 58.854 47.619 0.00 0.00 42.66 4.26
2748 2810 1.136141 CGTGCTGTTTTGCTCTAGCTG 60.136 52.381 0.00 0.00 42.66 4.24
2749 2811 1.151668 CGTGCTGTTTTGCTCTAGCT 58.848 50.000 3.26 0.00 42.66 3.32
2750 2812 0.868406 ACGTGCTGTTTTGCTCTAGC 59.132 50.000 0.00 0.00 42.50 3.42
2751 2813 3.057019 TGTACGTGCTGTTTTGCTCTAG 58.943 45.455 4.97 0.00 0.00 2.43
2752 2814 3.100658 TGTACGTGCTGTTTTGCTCTA 57.899 42.857 4.97 0.00 0.00 2.43
2753 2815 1.948104 TGTACGTGCTGTTTTGCTCT 58.052 45.000 4.97 0.00 0.00 4.09
2766 2828 0.249741 GCTGACTGGGTGTTGTACGT 60.250 55.000 0.00 0.00 0.00 3.57
2910 2973 0.237235 GGTCTGCGATGCGAAAACAA 59.763 50.000 0.00 0.00 0.00 2.83
2917 2981 1.224069 CCTATTGGGTCTGCGATGCG 61.224 60.000 0.00 0.00 0.00 4.73
3007 3071 1.564348 ACAATAGGTAGTTGGGCTGGG 59.436 52.381 0.00 0.00 0.00 4.45
3010 3074 1.844497 GGGACAATAGGTAGTTGGGCT 59.156 52.381 0.00 0.00 0.00 5.19
3011 3075 1.562475 TGGGACAATAGGTAGTTGGGC 59.438 52.381 0.00 0.00 31.92 5.36
3015 3079 3.216230 AGGGTGGGACAATAGGTAGTT 57.784 47.619 0.00 0.00 44.16 2.24
3016 3080 2.963654 AGGGTGGGACAATAGGTAGT 57.036 50.000 0.00 0.00 44.16 2.73
3047 3112 1.880675 GATCTGGAGTCGCGGATCTAA 59.119 52.381 6.13 0.00 33.80 2.10
3099 3164 4.645588 ACTAGAGTACTGTATGAACCAGCC 59.354 45.833 0.00 0.00 33.09 4.85
3101 3166 8.678593 TGATACTAGAGTACTGTATGAACCAG 57.321 38.462 0.00 0.00 32.72 4.00
3148 3213 1.134946 GCTCACATCCCCCATTTTTCG 59.865 52.381 0.00 0.00 0.00 3.46
3219 3284 2.425312 GACGATCTCTGCAGAAGAAGGA 59.575 50.000 18.85 11.43 33.37 3.36
3304 3369 7.778470 ATTTTTCATTTTGTAAGCCGTTTGA 57.222 28.000 0.00 0.00 0.00 2.69
3351 3416 2.675772 ACGTCGAGGGACCACTCC 60.676 66.667 10.27 0.00 40.17 3.85
3352 3417 2.876219 GACGTCGAGGGACCACTC 59.124 66.667 10.27 0.00 40.17 3.51
3353 3418 3.054503 CGACGTCGAGGGACCACT 61.055 66.667 33.35 0.00 43.02 4.00
3354 3419 3.052082 TCGACGTCGAGGGACCAC 61.052 66.667 34.97 0.00 44.22 4.16
3389 3454 0.034896 ATGACCGTCGTGGAGCTTTT 59.965 50.000 3.47 0.00 42.00 2.27
3405 3470 0.981183 AAGTGGCCGGAGTACAATGA 59.019 50.000 5.05 0.00 0.00 2.57
3407 3472 2.463752 TCTAAGTGGCCGGAGTACAAT 58.536 47.619 5.05 0.00 0.00 2.71
3410 3475 1.471153 GCTTCTAAGTGGCCGGAGTAC 60.471 57.143 5.05 0.00 0.00 2.73
3435 3500 3.011144 TCTTCTTATGGGGCATTTCACCA 59.989 43.478 0.00 0.00 38.88 4.17
3436 3501 3.631250 TCTTCTTATGGGGCATTTCACC 58.369 45.455 0.00 0.00 0.00 4.02
3489 3554 2.034879 CGTGACTGGCCCATGTGTC 61.035 63.158 0.00 1.56 0.00 3.67
3525 3590 2.029964 TCCGGTCTGGTTTGCGTC 59.970 61.111 0.00 0.00 39.52 5.19
3540 3605 8.822652 AAATTGATTTCTTGTCTCAATTGTCC 57.177 30.769 5.13 0.00 44.59 4.02
3546 3611 9.650539 TCAACAAAAATTGATTTCTTGTCTCAA 57.349 25.926 12.75 0.00 33.62 3.02
3570 3635 2.970639 CCCTCTTTCGCCGTCTCA 59.029 61.111 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.