Multiple sequence alignment - TraesCS3B01G612000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G612000 chr3B 100.000 3211 0 0 1 3211 829390763 829393973 0.000000e+00 5930.0
1 TraesCS3B01G612000 chr3B 78.171 678 144 4 1536 2211 64794626 64795301 2.290000e-116 429.0
2 TraesCS3B01G612000 chr3B 91.822 269 13 6 2423 2688 602900826 602901088 1.820000e-97 366.0
3 TraesCS3B01G612000 chr3D 91.950 2298 136 26 92 2364 611672536 611674809 0.000000e+00 3173.0
4 TraesCS3B01G612000 chr3D 93.548 62 4 0 2366 2427 611674776 611674837 3.410000e-15 93.5
5 TraesCS3B01G612000 chr3A 91.333 2123 139 28 263 2364 746461588 746463686 0.000000e+00 2859.0
6 TraesCS3B01G612000 chr3A 93.750 48 1 2 461 507 444286132 444286178 1.600000e-08 71.3
7 TraesCS3B01G612000 chr7B 93.988 682 41 0 1532 2213 454182546 454183227 0.000000e+00 1033.0
8 TraesCS3B01G612000 chr7B 85.618 591 54 14 851 1418 454181456 454182038 2.760000e-165 592.0
9 TraesCS3B01G612000 chr7B 84.545 220 29 3 2983 3200 677715655 677715439 2.510000e-51 213.0
10 TraesCS3B01G612000 chr7A 92.817 710 47 4 1532 2239 487480407 487481114 0.000000e+00 1026.0
11 TraesCS3B01G612000 chr7A 92.195 410 31 1 1010 1418 487479247 487479656 2.150000e-161 579.0
12 TraesCS3B01G612000 chr7A 89.831 59 4 2 564 622 657525395 657525451 1.240000e-09 75.0
13 TraesCS3B01G612000 chr7D 93.109 682 47 0 1532 2213 437203701 437204382 0.000000e+00 1000.0
14 TraesCS3B01G612000 chr7D 84.984 626 58 18 851 1449 437202606 437203222 1.270000e-168 603.0
15 TraesCS3B01G612000 chr6D 89.249 679 73 0 1536 2214 3345786 3345108 0.000000e+00 850.0
16 TraesCS3B01G612000 chr6D 79.613 672 92 22 752 1415 3347418 3346784 1.060000e-119 440.0
17 TraesCS3B01G612000 chr6D 95.473 243 7 1 2425 2667 459066519 459066281 5.020000e-103 385.0
18 TraesCS3B01G612000 chr6D 84.545 220 29 4 2983 3200 84299650 84299434 2.510000e-51 213.0
19 TraesCS3B01G612000 chr6B 88.584 692 76 2 1536 2227 6629203 6628515 0.000000e+00 837.0
20 TraesCS3B01G612000 chr6B 86.352 403 55 0 1013 1415 6630513 6630111 1.060000e-119 440.0
21 TraesCS3B01G612000 chr6B 92.720 261 12 4 2426 2685 180776477 180776731 1.410000e-98 370.0
22 TraesCS3B01G612000 chr6B 92.720 261 12 4 2426 2685 605248978 605249232 1.410000e-98 370.0
23 TraesCS3B01G612000 chr6B 92.720 261 11 5 2426 2685 605258495 605258748 1.410000e-98 370.0
24 TraesCS3B01G612000 chr6B 80.997 321 49 7 2669 2979 26012974 26012656 8.900000e-61 244.0
25 TraesCS3B01G612000 chr6B 81.470 313 42 11 2669 2970 26227679 26227986 3.200000e-60 243.0
26 TraesCS3B01G612000 chr6A 88.791 678 74 2 1536 2212 2178697 2178021 0.000000e+00 830.0
27 TraesCS3B01G612000 chr6A 80.182 661 90 21 760 1415 2180896 2180272 1.050000e-124 457.0
28 TraesCS3B01G612000 chr6A 86.854 213 21 6 2983 3191 410909886 410910095 6.930000e-57 231.0
29 TraesCS3B01G612000 chrUn 95.102 245 8 1 2425 2669 59805086 59805326 1.810000e-102 383.0
30 TraesCS3B01G612000 chrUn 86.036 222 27 4 2980 3199 28288841 28288622 5.360000e-58 235.0
31 TraesCS3B01G612000 chr2B 93.774 257 11 3 2426 2681 107221162 107221414 6.500000e-102 381.0
32 TraesCS3B01G612000 chr5B 92.720 261 12 4 2426 2685 334739028 334739282 1.410000e-98 370.0
33 TraesCS3B01G612000 chr5B 93.478 46 3 0 466 511 566119957 566119912 5.750000e-08 69.4
34 TraesCS3B01G612000 chr1D 87.500 328 31 5 1115 1433 460527044 460527370 1.410000e-98 370.0
35 TraesCS3B01G612000 chr1B 92.720 261 12 4 2426 2685 558151850 558151596 1.410000e-98 370.0
36 TraesCS3B01G612000 chr5D 82.069 290 40 7 2669 2948 114976359 114976646 1.490000e-58 237.0
37 TraesCS3B01G612000 chr5D 79.688 320 51 11 2672 2984 310256916 310256604 5.390000e-53 219.0
38 TraesCS3B01G612000 chr5D 78.261 322 56 9 2666 2979 310661617 310661302 9.090000e-46 195.0
39 TraesCS3B01G612000 chr5D 90.909 66 5 1 467 532 57842562 57842498 1.590000e-13 87.9
40 TraesCS3B01G612000 chr5D 93.333 60 3 1 473 532 448453651 448453593 1.590000e-13 87.9
41 TraesCS3B01G612000 chr1A 85.586 222 25 5 2983 3200 137923986 137924204 3.220000e-55 226.0
42 TraesCS3B01G612000 chr1A 84.234 222 28 5 2983 3200 115566920 115566702 3.250000e-50 209.0
43 TraesCS3B01G612000 chr2A 81.315 289 39 13 2672 2949 142184471 142184755 1.500000e-53 220.0
44 TraesCS3B01G612000 chr2A 85.922 206 24 3 2987 3191 570252205 570252004 6.980000e-52 215.0
45 TraesCS3B01G612000 chr2A 83.262 233 31 6 2980 3211 221202887 221203112 1.170000e-49 207.0
46 TraesCS3B01G612000 chr2A 84.615 78 10 2 467 543 632934429 632934505 3.430000e-10 76.8
47 TraesCS3B01G612000 chr5A 83.761 234 31 5 2981 3211 571792140 571792369 6.980000e-52 215.0
48 TraesCS3B01G612000 chr5A 93.333 45 3 0 467 511 335592824 335592868 2.070000e-07 67.6
49 TraesCS3B01G612000 chr2D 81.467 259 37 6 2672 2921 134414269 134414525 5.430000e-48 202.0
50 TraesCS3B01G612000 chr2D 89.091 55 6 0 485 539 636616562 636616508 5.750000e-08 69.4
51 TraesCS3B01G612000 chr4B 79.139 302 44 15 2672 2959 659597494 659597790 1.180000e-44 191.0
52 TraesCS3B01G612000 chr4A 79.710 276 41 11 2712 2980 273738401 273738668 5.470000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G612000 chr3B 829390763 829393973 3210 False 5930.00 5930 100.0000 1 3211 1 chr3B.!!$F3 3210
1 TraesCS3B01G612000 chr3B 64794626 64795301 675 False 429.00 429 78.1710 1536 2211 1 chr3B.!!$F1 675
2 TraesCS3B01G612000 chr3D 611672536 611674837 2301 False 1633.25 3173 92.7490 92 2427 2 chr3D.!!$F1 2335
3 TraesCS3B01G612000 chr3A 746461588 746463686 2098 False 2859.00 2859 91.3330 263 2364 1 chr3A.!!$F2 2101
4 TraesCS3B01G612000 chr7B 454181456 454183227 1771 False 812.50 1033 89.8030 851 2213 2 chr7B.!!$F1 1362
5 TraesCS3B01G612000 chr7A 487479247 487481114 1867 False 802.50 1026 92.5060 1010 2239 2 chr7A.!!$F2 1229
6 TraesCS3B01G612000 chr7D 437202606 437204382 1776 False 801.50 1000 89.0465 851 2213 2 chr7D.!!$F1 1362
7 TraesCS3B01G612000 chr6D 3345108 3347418 2310 True 645.00 850 84.4310 752 2214 2 chr6D.!!$R3 1462
8 TraesCS3B01G612000 chr6B 6628515 6630513 1998 True 638.50 837 87.4680 1013 2227 2 chr6B.!!$R2 1214
9 TraesCS3B01G612000 chr6A 2178021 2180896 2875 True 643.50 830 84.4865 760 2212 2 chr6A.!!$R1 1452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.034477 GGTGGTCCGACATCCCATTT 60.034 55.0 0.0 0.0 0.0 2.32 F
1005 1030 0.255318 AGAAGCAAGCAGAGATGGGG 59.745 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1228 1265 1.301087 CCACGTTGTACGAGGCCAA 60.301 57.895 5.01 0.0 44.58 4.52 R
2716 4616 0.179023 TGTGAGGTGACATGCTTGCA 60.179 50.000 0.00 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.892686 ACATAACCTAGTGTAGAGAACCTCC 59.107 44.000 0.00 0.00 0.00 4.30
25 26 4.399483 AACCTAGTGTAGAGAACCTCCA 57.601 45.455 0.00 0.00 0.00 3.86
26 27 3.699413 ACCTAGTGTAGAGAACCTCCAC 58.301 50.000 0.00 0.00 0.00 4.02
27 28 2.683867 CCTAGTGTAGAGAACCTCCACG 59.316 54.545 0.00 0.00 31.33 4.94
28 29 2.289592 AGTGTAGAGAACCTCCACGT 57.710 50.000 0.00 0.00 31.33 4.49
29 30 2.595238 AGTGTAGAGAACCTCCACGTT 58.405 47.619 0.00 0.00 31.33 3.99
30 31 2.296471 AGTGTAGAGAACCTCCACGTTG 59.704 50.000 0.00 0.00 31.33 4.10
31 32 1.616865 TGTAGAGAACCTCCACGTTGG 59.383 52.381 0.00 0.00 39.43 3.77
32 33 1.617357 GTAGAGAACCTCCACGTTGGT 59.383 52.381 0.00 0.00 39.03 3.67
33 34 0.393077 AGAGAACCTCCACGTTGGTG 59.607 55.000 5.55 3.01 43.99 4.17
41 42 2.107343 CACGTTGGTGGTCCGACA 59.893 61.111 0.00 0.00 45.88 4.35
42 43 1.301401 CACGTTGGTGGTCCGACAT 60.301 57.895 0.00 0.00 45.88 3.06
43 44 1.005394 ACGTTGGTGGTCCGACATC 60.005 57.895 0.00 0.00 45.88 3.06
44 45 1.740296 CGTTGGTGGTCCGACATCC 60.740 63.158 0.00 2.85 45.88 3.51
45 46 1.376812 GTTGGTGGTCCGACATCCC 60.377 63.158 0.00 0.00 45.14 3.85
46 47 1.843832 TTGGTGGTCCGACATCCCA 60.844 57.895 0.00 0.16 36.30 4.37
47 48 1.204786 TTGGTGGTCCGACATCCCAT 61.205 55.000 0.00 0.00 36.30 4.00
48 49 1.204786 TGGTGGTCCGACATCCCATT 61.205 55.000 0.00 0.00 36.30 3.16
49 50 0.034477 GGTGGTCCGACATCCCATTT 60.034 55.000 0.00 0.00 0.00 2.32
50 51 1.615919 GGTGGTCCGACATCCCATTTT 60.616 52.381 0.00 0.00 0.00 1.82
51 52 2.356330 GGTGGTCCGACATCCCATTTTA 60.356 50.000 0.00 0.00 0.00 1.52
52 53 2.943033 GTGGTCCGACATCCCATTTTAG 59.057 50.000 0.00 0.00 0.00 1.85
53 54 1.947456 GGTCCGACATCCCATTTTAGC 59.053 52.381 0.00 0.00 0.00 3.09
54 55 1.947456 GTCCGACATCCCATTTTAGCC 59.053 52.381 0.00 0.00 0.00 3.93
55 56 0.944386 CCGACATCCCATTTTAGCCG 59.056 55.000 0.00 0.00 0.00 5.52
56 57 1.663695 CGACATCCCATTTTAGCCGT 58.336 50.000 0.00 0.00 0.00 5.68
57 58 1.330521 CGACATCCCATTTTAGCCGTG 59.669 52.381 0.00 0.00 0.00 4.94
58 59 2.639065 GACATCCCATTTTAGCCGTGA 58.361 47.619 0.00 0.00 0.00 4.35
59 60 2.614057 GACATCCCATTTTAGCCGTGAG 59.386 50.000 0.00 0.00 0.00 3.51
60 61 1.334869 CATCCCATTTTAGCCGTGAGC 59.665 52.381 0.00 0.00 44.25 4.26
86 87 8.803201 GATTGATCGACATAATCTAGTGTTGA 57.197 34.615 4.17 4.17 41.57 3.18
87 88 8.809159 ATTGATCGACATAATCTAGTGTTGAG 57.191 34.615 7.12 0.00 40.89 3.02
88 89 7.568199 TGATCGACATAATCTAGTGTTGAGA 57.432 36.000 7.12 0.00 40.89 3.27
89 90 7.996385 TGATCGACATAATCTAGTGTTGAGAA 58.004 34.615 7.12 0.00 40.89 2.87
90 91 8.633561 TGATCGACATAATCTAGTGTTGAGAAT 58.366 33.333 7.12 0.00 40.89 2.40
91 92 9.123709 GATCGACATAATCTAGTGTTGAGAATC 57.876 37.037 7.12 0.00 40.89 2.52
92 93 8.226819 TCGACATAATCTAGTGTTGAGAATCT 57.773 34.615 0.00 0.00 34.62 2.40
93 94 8.346300 TCGACATAATCTAGTGTTGAGAATCTC 58.654 37.037 2.75 2.75 34.62 2.75
94 95 7.593273 CGACATAATCTAGTGTTGAGAATCTCC 59.407 40.741 7.91 0.00 34.92 3.71
95 96 8.311395 ACATAATCTAGTGTTGAGAATCTCCA 57.689 34.615 7.91 0.00 34.92 3.86
96 97 8.420222 ACATAATCTAGTGTTGAGAATCTCCAG 58.580 37.037 7.91 0.00 34.92 3.86
97 98 6.865834 AATCTAGTGTTGAGAATCTCCAGT 57.134 37.500 7.91 5.11 34.92 4.00
103 104 4.580580 GTGTTGAGAATCTCCAGTTTGGTT 59.419 41.667 7.91 0.00 39.03 3.67
107 108 1.546029 GAATCTCCAGTTTGGTTGGCC 59.454 52.381 0.00 0.00 39.03 5.36
110 111 3.989787 CCAGTTTGGTTGGCCGGC 61.990 66.667 21.18 21.18 37.67 6.13
121 122 4.109675 GGCCGGCCCAGTATGTGT 62.110 66.667 36.64 0.00 0.00 3.72
122 123 2.045340 GCCGGCCCAGTATGTGTT 60.045 61.111 18.11 0.00 0.00 3.32
127 128 0.322456 GGCCCAGTATGTGTTGAGCA 60.322 55.000 0.00 0.00 0.00 4.26
145 146 2.034317 ATGTGCGTCGCAATCAGCA 61.034 52.632 23.58 15.64 46.13 4.41
177 178 2.194201 TCCCTGGACGGACAAAAATC 57.806 50.000 0.00 0.00 33.16 2.17
184 185 2.742589 GGACGGACAAAAATCTGGAGAC 59.257 50.000 0.00 0.00 0.00 3.36
189 190 4.554723 CGGACAAAAATCTGGAGACACAAC 60.555 45.833 0.00 0.00 35.60 3.32
209 210 7.094075 ACACAACTTAGTACCATCTTGTATCGA 60.094 37.037 0.00 0.00 0.00 3.59
210 211 7.432545 CACAACTTAGTACCATCTTGTATCGAG 59.567 40.741 0.00 0.00 0.00 4.04
211 212 7.338703 ACAACTTAGTACCATCTTGTATCGAGA 59.661 37.037 0.00 0.00 0.00 4.04
212 213 7.876936 ACTTAGTACCATCTTGTATCGAGAA 57.123 36.000 0.00 0.00 0.00 2.87
213 214 8.289939 ACTTAGTACCATCTTGTATCGAGAAA 57.710 34.615 0.00 0.00 0.00 2.52
214 215 8.746530 ACTTAGTACCATCTTGTATCGAGAAAA 58.253 33.333 0.00 0.00 0.00 2.29
215 216 9.751542 CTTAGTACCATCTTGTATCGAGAAAAT 57.248 33.333 0.00 0.00 0.00 1.82
247 248 6.949352 ATAATATGGGTGAACTGCTCAAAG 57.051 37.500 0.00 0.00 35.22 2.77
251 252 3.149196 TGGGTGAACTGCTCAAAGAATC 58.851 45.455 0.00 0.00 35.22 2.52
278 280 5.236695 AGAAACGCAGACCTTTCTAGTTTTC 59.763 40.000 8.09 0.00 39.77 2.29
312 314 2.939261 GCCGACCTTGTTCTCCGGA 61.939 63.158 2.93 2.93 42.49 5.14
331 333 2.356695 GGACCCGGACGAAATTTATTGG 59.643 50.000 0.73 0.00 0.00 3.16
455 458 1.078143 AAATCTCACTGCGCCCTCC 60.078 57.895 4.18 0.00 0.00 4.30
481 484 7.328112 GTCGTCGTCAAAATGAATGTATCTAC 58.672 38.462 0.00 0.00 0.00 2.59
517 520 3.735237 AGATACATCCGTTTGAGCGAT 57.265 42.857 0.00 0.00 0.00 4.58
528 531 6.741109 TCCGTTTGAGCGATAACTAATATGA 58.259 36.000 0.00 0.00 0.00 2.15
544 547 9.830186 AACTAATATGAGATGGAGGTAGTACAT 57.170 33.333 2.06 0.00 0.00 2.29
552 555 9.159254 TGAGATGGAGGTAGTACATGATTATTT 57.841 33.333 0.00 0.00 0.00 1.40
556 559 9.920946 ATGGAGGTAGTACATGATTATTTTGTT 57.079 29.630 0.00 0.00 0.00 2.83
606 610 9.443283 GAAAAACATCCAATCTATTCATCTTCG 57.557 33.333 0.00 0.00 0.00 3.79
613 617 7.899973 TCCAATCTATTCATCTTCGATCATGA 58.100 34.615 0.00 0.00 0.00 3.07
657 661 7.335422 ACATGTTGTCCATCTTCACTTTATCTC 59.665 37.037 0.00 0.00 0.00 2.75
714 718 6.127810 TGCTATGTTTCTAGTACACCTACG 57.872 41.667 0.00 0.00 0.00 3.51
719 723 3.837213 TTCTAGTACACCTACGCACAC 57.163 47.619 0.00 0.00 0.00 3.82
724 728 2.038033 AGTACACCTACGCACACCATTT 59.962 45.455 0.00 0.00 0.00 2.32
725 729 1.234821 ACACCTACGCACACCATTTG 58.765 50.000 0.00 0.00 0.00 2.32
726 730 1.202710 ACACCTACGCACACCATTTGA 60.203 47.619 0.00 0.00 0.00 2.69
728 732 1.877443 ACCTACGCACACCATTTGAAC 59.123 47.619 0.00 0.00 0.00 3.18
729 733 1.876799 CCTACGCACACCATTTGAACA 59.123 47.619 0.00 0.00 0.00 3.18
778 786 6.079424 ACCACAACCACAACAATAATGTAC 57.921 37.500 0.00 0.00 39.40 2.90
891 906 3.891366 CCAGAAAGCCCCATATAACCAAG 59.109 47.826 0.00 0.00 0.00 3.61
892 907 4.386312 CCAGAAAGCCCCATATAACCAAGA 60.386 45.833 0.00 0.00 0.00 3.02
893 908 5.200483 CAGAAAGCCCCATATAACCAAGAA 58.800 41.667 0.00 0.00 0.00 2.52
894 909 5.656416 CAGAAAGCCCCATATAACCAAGAAA 59.344 40.000 0.00 0.00 0.00 2.52
1005 1030 0.255318 AGAAGCAAGCAGAGATGGGG 59.745 55.000 0.00 0.00 0.00 4.96
1155 1192 0.603975 GCAAGTTCTTGACTCCCGCT 60.604 55.000 15.52 0.00 37.72 5.52
1228 1265 1.664321 GGACCGTATGCTCCGTCTGT 61.664 60.000 0.00 0.00 0.00 3.41
1435 1483 6.301169 TCATCCCTCTTTCTTCTTCTTACC 57.699 41.667 0.00 0.00 0.00 2.85
1454 1502 2.291800 ACCTTGCCCATTTGCTCAGTAT 60.292 45.455 0.00 0.00 0.00 2.12
1455 1503 3.053693 ACCTTGCCCATTTGCTCAGTATA 60.054 43.478 0.00 0.00 0.00 1.47
1456 1504 4.147321 CCTTGCCCATTTGCTCAGTATAT 58.853 43.478 0.00 0.00 0.00 0.86
1457 1505 5.163099 ACCTTGCCCATTTGCTCAGTATATA 60.163 40.000 0.00 0.00 0.00 0.86
1497 3007 2.945008 GTGGCAAGCAGAGCACATATAA 59.055 45.455 0.00 0.00 0.00 0.98
1526 3422 2.006888 GTGTGGGTGAATCATACCGTG 58.993 52.381 3.19 0.00 39.14 4.94
1827 3723 0.834261 TGACCTTCCCCACGTCATCA 60.834 55.000 0.00 0.00 31.74 3.07
1828 3724 0.108138 GACCTTCCCCACGTCATCAG 60.108 60.000 0.00 0.00 0.00 2.90
1829 3725 0.836400 ACCTTCCCCACGTCATCAGT 60.836 55.000 0.00 0.00 0.00 3.41
2165 4061 1.741770 GTTCGCCGCCATGAAGACT 60.742 57.895 0.00 0.00 0.00 3.24
2228 4124 5.193663 AGTAGATGATCCATGACAACGAG 57.806 43.478 0.00 0.00 0.00 4.18
2229 4125 4.646945 AGTAGATGATCCATGACAACGAGT 59.353 41.667 0.00 0.00 0.00 4.18
2271 4171 4.153117 CACCTGCATGTGTACTTTCTCTTC 59.847 45.833 13.40 0.00 0.00 2.87
2282 4182 7.124471 GTGTACTTTCTCTTCGTTTTTCCTTC 58.876 38.462 0.00 0.00 0.00 3.46
2284 4184 6.753107 ACTTTCTCTTCGTTTTTCCTTCAA 57.247 33.333 0.00 0.00 0.00 2.69
2285 4185 7.153217 ACTTTCTCTTCGTTTTTCCTTCAAA 57.847 32.000 0.00 0.00 0.00 2.69
2286 4186 7.599171 ACTTTCTCTTCGTTTTTCCTTCAAAA 58.401 30.769 0.00 0.00 31.73 2.44
2287 4187 8.085909 ACTTTCTCTTCGTTTTTCCTTCAAAAA 58.914 29.630 0.00 0.00 40.93 1.94
2315 4215 9.784531 AATTTCACTCTCTGAGTCAATCTAAAA 57.215 29.630 4.32 0.00 41.37 1.52
2361 4261 9.832445 ATTGATTCGAAATGTACTACCATTAGT 57.168 29.630 0.00 0.00 41.69 2.24
2365 4265 8.931385 TTCGAAATGTACTACCATTAGTAACC 57.069 34.615 0.00 0.00 41.55 2.85
2366 4266 7.195646 TCGAAATGTACTACCATTAGTAACCG 58.804 38.462 0.00 0.00 41.55 4.44
2367 4267 6.974622 CGAAATGTACTACCATTAGTAACCGT 59.025 38.462 0.00 0.00 41.55 4.83
2368 4268 7.166473 CGAAATGTACTACCATTAGTAACCGTC 59.834 40.741 0.00 0.00 41.55 4.79
2369 4269 5.484173 TGTACTACCATTAGTAACCGTCG 57.516 43.478 0.00 0.00 41.55 5.12
2370 4270 4.335315 TGTACTACCATTAGTAACCGTCGG 59.665 45.833 10.48 10.48 41.55 4.79
2371 4271 3.356290 ACTACCATTAGTAACCGTCGGT 58.644 45.455 12.23 12.23 36.73 4.69
2373 4273 2.963432 ACCATTAGTAACCGTCGGTTG 58.037 47.619 34.54 19.97 46.35 3.77
2374 4274 2.562298 ACCATTAGTAACCGTCGGTTGA 59.438 45.455 34.54 19.27 46.35 3.18
2375 4275 3.196254 ACCATTAGTAACCGTCGGTTGAT 59.804 43.478 34.54 25.04 46.35 2.57
2376 4276 4.186159 CCATTAGTAACCGTCGGTTGATT 58.814 43.478 34.54 22.44 46.35 2.57
2377 4277 4.632688 CCATTAGTAACCGTCGGTTGATTT 59.367 41.667 34.54 20.32 46.35 2.17
2378 4278 5.446741 CCATTAGTAACCGTCGGTTGATTTG 60.447 44.000 34.54 23.74 46.35 2.32
2379 4279 3.389925 AGTAACCGTCGGTTGATTTGA 57.610 42.857 34.54 14.74 46.35 2.69
2380 4280 3.731089 AGTAACCGTCGGTTGATTTGAA 58.269 40.909 34.54 14.02 46.35 2.69
2381 4281 4.128643 AGTAACCGTCGGTTGATTTGAAA 58.871 39.130 34.54 13.30 46.35 2.69
2382 4282 4.758165 AGTAACCGTCGGTTGATTTGAAAT 59.242 37.500 34.54 13.21 46.35 2.17
2383 4283 3.552604 ACCGTCGGTTGATTTGAAATG 57.447 42.857 12.23 0.00 27.29 2.32
2384 4284 2.882137 ACCGTCGGTTGATTTGAAATGT 59.118 40.909 12.23 0.00 27.29 2.71
2385 4285 4.066490 ACCGTCGGTTGATTTGAAATGTA 58.934 39.130 12.23 0.00 27.29 2.29
2386 4286 4.083696 ACCGTCGGTTGATTTGAAATGTAC 60.084 41.667 12.23 0.00 27.29 2.90
2427 4327 5.682943 TTGCTCTTAATGGTTGTGTGTAC 57.317 39.130 0.00 0.00 0.00 2.90
2428 4328 4.968259 TGCTCTTAATGGTTGTGTGTACT 58.032 39.130 0.00 0.00 0.00 2.73
2429 4329 6.104146 TGCTCTTAATGGTTGTGTGTACTA 57.896 37.500 0.00 0.00 0.00 1.82
2430 4330 5.929992 TGCTCTTAATGGTTGTGTGTACTAC 59.070 40.000 0.00 0.00 32.75 2.73
2435 4335 2.358939 GGTTGTGTGTACTACCTCCG 57.641 55.000 4.23 0.00 45.52 4.63
2436 4336 1.615392 GGTTGTGTGTACTACCTCCGT 59.385 52.381 4.23 0.00 45.52 4.69
2437 4337 2.352127 GGTTGTGTGTACTACCTCCGTC 60.352 54.545 4.23 0.00 45.52 4.79
2438 4338 1.538047 TGTGTGTACTACCTCCGTCC 58.462 55.000 0.00 0.00 0.00 4.79
2439 4339 0.449388 GTGTGTACTACCTCCGTCCG 59.551 60.000 0.00 0.00 0.00 4.79
2440 4340 0.677731 TGTGTACTACCTCCGTCCGG 60.678 60.000 0.00 0.00 0.00 5.14
2441 4341 1.077501 TGTACTACCTCCGTCCGGG 60.078 63.158 0.00 0.00 35.59 5.73
2442 4342 1.077429 GTACTACCTCCGTCCGGGT 60.077 63.158 0.00 0.00 39.40 5.28
2443 4343 0.681243 GTACTACCTCCGTCCGGGTT 60.681 60.000 0.00 0.00 37.07 4.11
2444 4344 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
2445 4345 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
2446 4346 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
2447 4347 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
2448 4348 0.251073 ACCTCCGTCCGGGTTTATTG 59.749 55.000 0.00 0.00 37.00 1.90
2449 4349 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
2450 4350 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
2451 4351 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
2452 4352 0.745486 CCGTCCGGGTTTATTGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
2453 4353 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
2454 4354 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
2455 4355 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
2456 4356 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
2457 4357 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
2458 4358 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
2459 4359 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
2460 4360 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
2461 4361 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
2462 4362 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
2463 4363 5.427157 GGGTTTATTGGTCCCCATTGTATTT 59.573 40.000 0.00 0.00 37.09 1.40
2464 4364 6.069905 GGGTTTATTGGTCCCCATTGTATTTT 60.070 38.462 0.00 0.00 37.09 1.82
2465 4365 6.821160 GGTTTATTGGTCCCCATTGTATTTTG 59.179 38.462 0.00 0.00 31.53 2.44
2466 4366 7.390823 GTTTATTGGTCCCCATTGTATTTTGT 58.609 34.615 0.00 0.00 31.53 2.83
2467 4367 4.881019 TTGGTCCCCATTGTATTTTGTG 57.119 40.909 0.00 0.00 31.53 3.33
2468 4368 2.564947 TGGTCCCCATTGTATTTTGTGC 59.435 45.455 0.00 0.00 0.00 4.57
2469 4369 2.093711 GGTCCCCATTGTATTTTGTGCC 60.094 50.000 0.00 0.00 0.00 5.01
2470 4370 2.564947 GTCCCCATTGTATTTTGTGCCA 59.435 45.455 0.00 0.00 0.00 4.92
2471 4371 3.007398 GTCCCCATTGTATTTTGTGCCAA 59.993 43.478 0.00 0.00 0.00 4.52
2472 4372 3.648067 TCCCCATTGTATTTTGTGCCAAA 59.352 39.130 0.00 0.00 0.00 3.28
2473 4373 4.288105 TCCCCATTGTATTTTGTGCCAAAT 59.712 37.500 1.89 0.00 0.00 2.32
2474 4374 5.008980 CCCCATTGTATTTTGTGCCAAATT 58.991 37.500 1.89 2.10 0.00 1.82
2475 4375 5.476254 CCCCATTGTATTTTGTGCCAAATTT 59.524 36.000 1.89 0.00 0.00 1.82
2476 4376 6.015603 CCCCATTGTATTTTGTGCCAAATTTT 60.016 34.615 1.89 0.00 0.00 1.82
2477 4377 6.862090 CCCATTGTATTTTGTGCCAAATTTTG 59.138 34.615 1.99 1.99 0.00 2.44
2478 4378 7.255381 CCCATTGTATTTTGTGCCAAATTTTGA 60.255 33.333 10.72 0.00 0.00 2.69
2479 4379 7.590689 CCATTGTATTTTGTGCCAAATTTTGAC 59.409 33.333 10.72 0.00 0.00 3.18
2480 4380 6.610741 TGTATTTTGTGCCAAATTTTGACC 57.389 33.333 10.72 2.35 0.00 4.02
2481 4381 6.115446 TGTATTTTGTGCCAAATTTTGACCA 58.885 32.000 10.72 4.80 0.00 4.02
2482 4382 6.769822 TGTATTTTGTGCCAAATTTTGACCAT 59.230 30.769 10.72 0.00 0.00 3.55
2483 4383 7.933577 TGTATTTTGTGCCAAATTTTGACCATA 59.066 29.630 10.72 3.51 0.00 2.74
2484 4384 6.857777 TTTTGTGCCAAATTTTGACCATAG 57.142 33.333 10.72 0.00 0.00 2.23
2485 4385 5.798125 TTGTGCCAAATTTTGACCATAGA 57.202 34.783 10.72 0.00 0.00 1.98
2486 4386 5.999205 TGTGCCAAATTTTGACCATAGAT 57.001 34.783 10.72 0.00 0.00 1.98
2487 4387 6.357579 TGTGCCAAATTTTGACCATAGATT 57.642 33.333 10.72 0.00 0.00 2.40
2488 4388 6.164876 TGTGCCAAATTTTGACCATAGATTG 58.835 36.000 10.72 0.00 0.00 2.67
2489 4389 6.014755 TGTGCCAAATTTTGACCATAGATTGA 60.015 34.615 10.72 0.00 0.00 2.57
2490 4390 6.873076 GTGCCAAATTTTGACCATAGATTGAA 59.127 34.615 10.72 0.00 0.00 2.69
2491 4391 6.873076 TGCCAAATTTTGACCATAGATTGAAC 59.127 34.615 10.72 0.00 0.00 3.18
2492 4392 7.099120 GCCAAATTTTGACCATAGATTGAACT 58.901 34.615 10.72 0.00 0.00 3.01
2493 4393 8.250332 GCCAAATTTTGACCATAGATTGAACTA 58.750 33.333 10.72 0.00 0.00 2.24
2502 4402 9.295825 TGACCATAGATTGAACTAACAAAATGT 57.704 29.630 0.00 0.00 33.44 2.71
2507 4407 9.825972 ATAGATTGAACTAACAAAATGTTCACG 57.174 29.630 7.20 0.00 46.21 4.35
2508 4408 6.636850 AGATTGAACTAACAAAATGTTCACGC 59.363 34.615 7.20 3.68 46.21 5.34
2509 4409 5.236655 TGAACTAACAAAATGTTCACGCA 57.763 34.783 0.00 0.00 43.15 5.24
2510 4410 5.826586 TGAACTAACAAAATGTTCACGCAT 58.173 33.333 0.00 0.00 43.15 4.73
2511 4411 5.685068 TGAACTAACAAAATGTTCACGCATG 59.315 36.000 0.00 0.00 43.15 4.06
2512 4412 5.181690 ACTAACAAAATGTTCACGCATGT 57.818 34.783 0.00 0.00 40.22 3.21
2513 4413 5.212194 ACTAACAAAATGTTCACGCATGTC 58.788 37.500 0.00 0.00 40.22 3.06
2514 4414 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
2515 4415 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
2516 4416 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
2517 4417 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
2518 4418 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
2519 4419 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
2520 4420 1.064803 TGTTCACGCATGTCACCAAAC 59.935 47.619 0.00 0.00 0.00 2.93
2521 4421 1.064803 GTTCACGCATGTCACCAAACA 59.935 47.619 0.00 0.00 0.00 2.83
2522 4422 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
2523 4423 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
2524 4424 3.142174 TCACGCATGTCACCAAACATTA 58.858 40.909 0.00 0.00 37.78 1.90
2525 4425 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
2526 4426 4.938226 TCACGCATGTCACCAAACATTATA 59.062 37.500 0.00 0.00 37.78 0.98
2527 4427 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
2528 4428 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
2529 4429 6.751425 CACGCATGTCACCAAACATTATATTT 59.249 34.615 0.00 0.00 37.78 1.40
2530 4430 7.275341 CACGCATGTCACCAAACATTATATTTT 59.725 33.333 0.00 0.00 37.78 1.82
2531 4431 7.816995 ACGCATGTCACCAAACATTATATTTTT 59.183 29.630 0.00 0.00 37.78 1.94
2532 4432 8.109391 CGCATGTCACCAAACATTATATTTTTG 58.891 33.333 0.00 0.00 37.78 2.44
2533 4433 9.149225 GCATGTCACCAAACATTATATTTTTGA 57.851 29.630 0.00 0.00 37.78 2.69
2557 4457 9.527157 TGAAAACTATGTTCAAATAGGAATCCA 57.473 29.630 0.61 0.00 34.91 3.41
2593 4493 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
2594 4494 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
2595 4495 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
2596 4496 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
2597 4497 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
2598 4498 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
2599 4499 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
2636 4536 9.757227 TCAAAATTTGACACAAACTATAAAGGG 57.243 29.630 4.03 0.00 34.08 3.95
2637 4537 8.987890 CAAAATTTGACACAAACTATAAAGGGG 58.012 33.333 0.00 0.00 0.00 4.79
2638 4538 8.485578 AAATTTGACACAAACTATAAAGGGGA 57.514 30.769 0.00 0.00 0.00 4.81
2639 4539 6.887626 TTTGACACAAACTATAAAGGGGAC 57.112 37.500 0.00 0.00 0.00 4.46
2640 4540 4.571919 TGACACAAACTATAAAGGGGACG 58.428 43.478 0.00 0.00 0.00 4.79
2641 4541 3.937079 GACACAAACTATAAAGGGGACGG 59.063 47.826 0.00 0.00 0.00 4.79
2642 4542 3.583966 ACACAAACTATAAAGGGGACGGA 59.416 43.478 0.00 0.00 0.00 4.69
2643 4543 3.937079 CACAAACTATAAAGGGGACGGAC 59.063 47.826 0.00 0.00 0.00 4.79
2644 4544 3.054875 ACAAACTATAAAGGGGACGGACC 60.055 47.826 0.00 0.00 38.08 4.46
2645 4545 2.862850 ACTATAAAGGGGACGGACCT 57.137 50.000 0.00 0.00 40.96 3.85
2646 4546 3.979501 ACTATAAAGGGGACGGACCTA 57.020 47.619 0.00 0.00 37.35 3.08
2647 4547 4.482400 ACTATAAAGGGGACGGACCTAT 57.518 45.455 0.00 0.00 37.35 2.57
2648 4548 5.605540 ACTATAAAGGGGACGGACCTATA 57.394 43.478 0.00 0.00 37.35 1.31
2649 4549 5.969086 ACTATAAAGGGGACGGACCTATAA 58.031 41.667 0.00 0.00 37.35 0.98
2650 4550 6.384603 ACTATAAAGGGGACGGACCTATAAA 58.615 40.000 0.00 0.00 37.35 1.40
2651 4551 3.920231 AAAGGGGACGGACCTATAAAC 57.080 47.619 0.00 0.00 37.35 2.01
2652 4552 1.798626 AGGGGACGGACCTATAAACC 58.201 55.000 0.00 0.00 36.32 3.27
2653 4553 1.008693 AGGGGACGGACCTATAAACCA 59.991 52.381 0.00 0.00 36.32 3.67
2654 4554 1.415289 GGGGACGGACCTATAAACCAG 59.585 57.143 0.00 0.00 38.98 4.00
2655 4555 1.415289 GGGACGGACCTATAAACCAGG 59.585 57.143 0.00 0.00 39.25 4.45
2656 4556 2.391678 GGACGGACCTATAAACCAGGA 58.608 52.381 0.00 0.00 36.61 3.86
2657 4557 2.102084 GGACGGACCTATAAACCAGGAC 59.898 54.545 0.00 0.00 36.61 3.85
2658 4558 1.753073 ACGGACCTATAAACCAGGACG 59.247 52.381 0.00 2.59 40.39 4.79
2659 4559 1.068127 CGGACCTATAAACCAGGACGG 59.932 57.143 0.00 0.00 42.50 4.79
2660 4560 2.391678 GGACCTATAAACCAGGACGGA 58.608 52.381 0.00 0.00 38.63 4.69
2661 4561 2.364647 GGACCTATAAACCAGGACGGAG 59.635 54.545 0.00 0.00 38.63 4.63
2662 4562 3.294214 GACCTATAAACCAGGACGGAGA 58.706 50.000 0.00 0.00 38.63 3.71
2663 4563 3.896272 GACCTATAAACCAGGACGGAGAT 59.104 47.826 0.00 0.00 38.63 2.75
2664 4564 5.070823 ACCTATAAACCAGGACGGAGATA 57.929 43.478 0.00 0.00 38.63 1.98
2665 4565 5.078256 ACCTATAAACCAGGACGGAGATAG 58.922 45.833 0.00 0.00 38.63 2.08
2666 4566 5.078256 CCTATAAACCAGGACGGAGATAGT 58.922 45.833 0.00 0.00 38.63 2.12
2667 4567 6.183361 ACCTATAAACCAGGACGGAGATAGTA 60.183 42.308 0.00 0.00 38.63 1.82
2668 4568 6.150809 CCTATAAACCAGGACGGAGATAGTAC 59.849 46.154 0.00 0.00 38.63 2.73
2669 4569 2.361643 ACCAGGACGGAGATAGTACC 57.638 55.000 0.00 0.00 38.63 3.34
2670 4570 1.851653 ACCAGGACGGAGATAGTACCT 59.148 52.381 0.00 0.00 38.63 3.08
2671 4571 2.244252 ACCAGGACGGAGATAGTACCTT 59.756 50.000 0.00 0.00 38.63 3.50
2672 4572 3.461085 ACCAGGACGGAGATAGTACCTTA 59.539 47.826 0.00 0.00 38.63 2.69
2673 4573 4.106019 ACCAGGACGGAGATAGTACCTTAT 59.894 45.833 0.00 0.00 38.63 1.73
2674 4574 5.311649 ACCAGGACGGAGATAGTACCTTATA 59.688 44.000 0.00 0.00 38.63 0.98
2675 4575 6.011805 ACCAGGACGGAGATAGTACCTTATAT 60.012 42.308 0.00 0.00 38.63 0.86
2676 4576 7.183475 ACCAGGACGGAGATAGTACCTTATATA 59.817 40.741 0.00 0.00 38.63 0.86
2677 4577 7.498570 CCAGGACGGAGATAGTACCTTATATAC 59.501 44.444 0.00 0.00 36.56 1.47
2678 4578 7.498570 CAGGACGGAGATAGTACCTTATATACC 59.501 44.444 0.00 0.00 0.00 2.73
2679 4579 7.405565 AGGACGGAGATAGTACCTTATATACCT 59.594 40.741 0.00 0.00 0.00 3.08
2680 4580 8.709308 GGACGGAGATAGTACCTTATATACCTA 58.291 40.741 0.00 0.00 0.00 3.08
2718 4618 9.601217 CCTATTACCTTATGTATCCTAACATGC 57.399 37.037 0.00 0.00 40.29 4.06
2721 4621 8.902540 TTACCTTATGTATCCTAACATGCAAG 57.097 34.615 0.00 0.00 40.29 4.01
2722 4622 5.765182 ACCTTATGTATCCTAACATGCAAGC 59.235 40.000 0.00 0.00 40.29 4.01
2723 4623 5.764686 CCTTATGTATCCTAACATGCAAGCA 59.235 40.000 0.00 0.00 40.29 3.91
2724 4624 6.432162 CCTTATGTATCCTAACATGCAAGCAT 59.568 38.462 0.86 0.86 40.29 3.79
2733 4633 1.170442 CATGCAAGCATGTCACCTCA 58.830 50.000 23.25 0.00 46.20 3.86
2734 4634 1.135489 CATGCAAGCATGTCACCTCAC 60.135 52.381 23.25 0.00 46.20 3.51
2735 4635 0.179023 TGCAAGCATGTCACCTCACA 60.179 50.000 0.00 0.00 0.00 3.58
2736 4636 0.953727 GCAAGCATGTCACCTCACAA 59.046 50.000 0.00 0.00 0.00 3.33
2737 4637 1.542915 GCAAGCATGTCACCTCACAAT 59.457 47.619 0.00 0.00 0.00 2.71
2738 4638 2.029649 GCAAGCATGTCACCTCACAATT 60.030 45.455 0.00 0.00 0.00 2.32
2739 4639 3.191162 GCAAGCATGTCACCTCACAATTA 59.809 43.478 0.00 0.00 0.00 1.40
2740 4640 4.142315 GCAAGCATGTCACCTCACAATTAT 60.142 41.667 0.00 0.00 0.00 1.28
2741 4641 5.337554 CAAGCATGTCACCTCACAATTATG 58.662 41.667 0.00 0.00 0.00 1.90
2742 4642 4.847198 AGCATGTCACCTCACAATTATGA 58.153 39.130 0.00 0.00 0.00 2.15
2743 4643 4.880120 AGCATGTCACCTCACAATTATGAG 59.120 41.667 6.76 6.76 44.91 2.90
2744 4644 4.637534 GCATGTCACCTCACAATTATGAGT 59.362 41.667 12.58 0.00 43.99 3.41
2745 4645 5.448225 GCATGTCACCTCACAATTATGAGTG 60.448 44.000 12.58 10.49 43.99 3.51
2746 4646 5.482163 TGTCACCTCACAATTATGAGTGA 57.518 39.130 12.58 12.35 43.99 3.41
2755 4655 6.291377 TCACAATTATGAGTGAGATAAGGCC 58.709 40.000 0.00 0.00 39.65 5.19
2756 4656 5.471456 CACAATTATGAGTGAGATAAGGCCC 59.529 44.000 0.00 0.00 37.97 5.80
2757 4657 5.132648 ACAATTATGAGTGAGATAAGGCCCA 59.867 40.000 0.00 0.00 0.00 5.36
2758 4658 6.183361 ACAATTATGAGTGAGATAAGGCCCAT 60.183 38.462 0.00 0.00 0.00 4.00
2759 4659 5.489792 TTATGAGTGAGATAAGGCCCATC 57.510 43.478 0.00 2.40 0.00 3.51
2760 4660 2.050144 TGAGTGAGATAAGGCCCATCC 58.950 52.381 0.00 0.00 0.00 3.51
2762 4662 3.116746 TGAGTGAGATAAGGCCCATCCTA 60.117 47.826 0.00 0.00 46.94 2.94
2763 4663 3.904339 GAGTGAGATAAGGCCCATCCTAA 59.096 47.826 0.00 0.00 46.94 2.69
2764 4664 4.507342 AGTGAGATAAGGCCCATCCTAAT 58.493 43.478 0.00 0.00 46.94 1.73
2765 4665 4.288105 AGTGAGATAAGGCCCATCCTAATG 59.712 45.833 0.00 0.00 46.94 1.90
2766 4666 4.042187 GTGAGATAAGGCCCATCCTAATGT 59.958 45.833 0.00 0.00 46.94 2.71
2767 4667 4.042062 TGAGATAAGGCCCATCCTAATGTG 59.958 45.833 0.00 0.00 46.94 3.21
2768 4668 2.656947 TAAGGCCCATCCTAATGTGC 57.343 50.000 0.00 0.00 46.94 4.57
2769 4669 0.630673 AAGGCCCATCCTAATGTGCA 59.369 50.000 0.00 0.00 46.94 4.57
2770 4670 0.630673 AGGCCCATCCTAATGTGCAA 59.369 50.000 0.00 0.00 45.41 4.08
2771 4671 1.218704 AGGCCCATCCTAATGTGCAAT 59.781 47.619 0.00 0.00 45.41 3.56
2772 4672 1.615392 GGCCCATCCTAATGTGCAATC 59.385 52.381 0.00 0.00 37.94 2.67
2773 4673 2.309613 GCCCATCCTAATGTGCAATCA 58.690 47.619 0.00 0.00 36.41 2.57
2774 4674 2.895404 GCCCATCCTAATGTGCAATCAT 59.105 45.455 0.00 0.00 36.41 2.45
2775 4675 3.305813 GCCCATCCTAATGTGCAATCATG 60.306 47.826 0.00 0.00 36.41 3.07
2791 4691 6.168164 CAATCATGCATGGTAAAAACCAAC 57.832 37.500 25.97 0.00 43.83 3.77
2792 4692 5.743636 ATCATGCATGGTAAAAACCAACT 57.256 34.783 25.97 0.00 43.83 3.16
2793 4693 6.849085 ATCATGCATGGTAAAAACCAACTA 57.151 33.333 25.97 2.09 43.83 2.24
2794 4694 6.656632 TCATGCATGGTAAAAACCAACTAA 57.343 33.333 25.97 0.00 43.83 2.24
2795 4695 7.055667 TCATGCATGGTAAAAACCAACTAAA 57.944 32.000 25.97 0.00 43.83 1.85
2796 4696 6.926272 TCATGCATGGTAAAAACCAACTAAAC 59.074 34.615 25.97 0.00 43.83 2.01
2797 4697 5.602628 TGCATGGTAAAAACCAACTAAACC 58.397 37.500 0.64 0.00 43.83 3.27
2798 4698 5.128827 TGCATGGTAAAAACCAACTAAACCA 59.871 36.000 0.64 0.00 43.83 3.67
2799 4699 6.183361 TGCATGGTAAAAACCAACTAAACCAT 60.183 34.615 0.64 0.00 44.86 3.55
2800 4700 6.708502 GCATGGTAAAAACCAACTAAACCATT 59.291 34.615 0.64 0.00 42.15 3.16
2801 4701 7.095397 GCATGGTAAAAACCAACTAAACCATTC 60.095 37.037 0.64 0.00 42.15 2.67
2802 4702 7.419711 TGGTAAAAACCAACTAAACCATTCA 57.580 32.000 0.00 0.00 36.74 2.57
2803 4703 7.848128 TGGTAAAAACCAACTAAACCATTCAA 58.152 30.769 0.00 0.00 36.74 2.69
2804 4704 8.487028 TGGTAAAAACCAACTAAACCATTCAAT 58.513 29.630 0.00 0.00 36.74 2.57
2805 4705 8.984764 GGTAAAAACCAACTAAACCATTCAATC 58.015 33.333 0.00 0.00 0.00 2.67
2806 4706 9.535878 GTAAAAACCAACTAAACCATTCAATCA 57.464 29.630 0.00 0.00 0.00 2.57
2809 4709 9.705290 AAAACCAACTAAACCATTCAATCATAC 57.295 29.630 0.00 0.00 0.00 2.39
2810 4710 8.415950 AACCAACTAAACCATTCAATCATACA 57.584 30.769 0.00 0.00 0.00 2.29
2811 4711 8.593945 ACCAACTAAACCATTCAATCATACAT 57.406 30.769 0.00 0.00 0.00 2.29
2812 4712 8.469200 ACCAACTAAACCATTCAATCATACATG 58.531 33.333 0.00 0.00 0.00 3.21
2813 4713 7.922278 CCAACTAAACCATTCAATCATACATGG 59.078 37.037 0.00 0.00 41.85 3.66
2814 4714 8.685427 CAACTAAACCATTCAATCATACATGGA 58.315 33.333 4.04 0.00 38.88 3.41
2815 4715 8.455903 ACTAAACCATTCAATCATACATGGAG 57.544 34.615 4.04 0.00 38.88 3.86
2816 4716 8.274322 ACTAAACCATTCAATCATACATGGAGA 58.726 33.333 4.04 0.00 38.88 3.71
2817 4717 7.959658 AAACCATTCAATCATACATGGAGAA 57.040 32.000 4.04 0.00 38.88 2.87
2818 4718 7.959658 AACCATTCAATCATACATGGAGAAA 57.040 32.000 4.04 0.00 38.88 2.52
2819 4719 8.543293 AACCATTCAATCATACATGGAGAAAT 57.457 30.769 4.04 0.00 38.88 2.17
2820 4720 7.948357 ACCATTCAATCATACATGGAGAAATG 58.052 34.615 4.04 0.01 38.88 2.32
2821 4721 7.562454 ACCATTCAATCATACATGGAGAAATGT 59.438 33.333 4.04 0.00 43.21 2.71
2822 4722 8.418662 CCATTCAATCATACATGGAGAAATGTT 58.581 33.333 0.00 0.00 41.09 2.71
2823 4723 9.811995 CATTCAATCATACATGGAGAAATGTTT 57.188 29.630 0.00 0.00 41.09 2.83
2826 4726 9.859427 TCAATCATACATGGAGAAATGTTTTTC 57.141 29.630 0.00 0.00 41.09 2.29
2827 4727 9.642327 CAATCATACATGGAGAAATGTTTTTCA 57.358 29.630 0.00 0.00 43.09 2.69
2830 4730 9.859427 TCATACATGGAGAAATGTTTTTCATTC 57.141 29.630 0.00 0.00 44.85 2.67
2831 4731 9.642327 CATACATGGAGAAATGTTTTTCATTCA 57.358 29.630 0.00 0.00 44.85 2.57
2832 4732 9.865321 ATACATGGAGAAATGTTTTTCATTCAG 57.135 29.630 0.00 0.00 44.85 3.02
2833 4733 7.729116 ACATGGAGAAATGTTTTTCATTCAGT 58.271 30.769 0.00 0.00 44.85 3.41
2834 4734 8.206189 ACATGGAGAAATGTTTTTCATTCAGTT 58.794 29.630 0.00 0.00 44.85 3.16
2835 4735 9.695526 CATGGAGAAATGTTTTTCATTCAGTTA 57.304 29.630 1.74 0.00 44.85 2.24
2958 4858 8.641499 TTTTATCAACCAATTCTCACAACAAC 57.359 30.769 0.00 0.00 0.00 3.32
2959 4859 5.850557 ATCAACCAATTCTCACAACAACA 57.149 34.783 0.00 0.00 0.00 3.33
2960 4860 5.850557 TCAACCAATTCTCACAACAACAT 57.149 34.783 0.00 0.00 0.00 2.71
2961 4861 5.590145 TCAACCAATTCTCACAACAACATG 58.410 37.500 0.00 0.00 0.00 3.21
2962 4862 5.126869 TCAACCAATTCTCACAACAACATGT 59.873 36.000 0.00 0.00 0.00 3.21
2967 4867 1.691196 CTCACAACAACATGTGGGGT 58.309 50.000 4.95 0.00 46.00 4.95
2968 4868 2.857483 CTCACAACAACATGTGGGGTA 58.143 47.619 4.95 0.00 46.00 3.69
2969 4869 3.420893 CTCACAACAACATGTGGGGTAT 58.579 45.455 4.95 0.00 46.00 2.73
2970 4870 3.826157 CTCACAACAACATGTGGGGTATT 59.174 43.478 4.95 0.00 46.00 1.89
2971 4871 4.082787 CTCACAACAACATGTGGGGTATTC 60.083 45.833 4.95 0.00 46.00 1.75
2972 4872 3.826157 CACAACAACATGTGGGGTATTCT 59.174 43.478 4.95 0.00 45.47 2.40
2973 4873 5.007034 CACAACAACATGTGGGGTATTCTA 58.993 41.667 4.95 0.00 45.47 2.10
2974 4874 5.652014 CACAACAACATGTGGGGTATTCTAT 59.348 40.000 4.95 0.00 45.47 1.98
2975 4875 6.826231 CACAACAACATGTGGGGTATTCTATA 59.174 38.462 4.95 0.00 45.47 1.31
2976 4876 7.338196 CACAACAACATGTGGGGTATTCTATAA 59.662 37.037 4.95 0.00 45.47 0.98
2977 4877 8.058847 ACAACAACATGTGGGGTATTCTATAAT 58.941 33.333 4.95 0.00 30.82 1.28
2978 4878 8.912988 CAACAACATGTGGGGTATTCTATAATT 58.087 33.333 4.95 0.00 0.00 1.40
3008 4908 8.466617 ACTACTCCCTCTGTTACATAATGTAG 57.533 38.462 0.00 0.00 33.92 2.74
3009 4909 8.060075 ACTACTCCCTCTGTTACATAATGTAGT 58.940 37.037 0.00 0.00 33.92 2.73
3010 4910 7.113658 ACTCCCTCTGTTACATAATGTAGTG 57.886 40.000 0.00 0.00 33.92 2.74
3011 4911 5.914033 TCCCTCTGTTACATAATGTAGTGC 58.086 41.667 0.00 0.00 33.92 4.40
3012 4912 5.423931 TCCCTCTGTTACATAATGTAGTGCA 59.576 40.000 0.00 0.00 33.92 4.57
3013 4913 6.099701 TCCCTCTGTTACATAATGTAGTGCAT 59.900 38.462 0.00 0.00 40.03 3.96
3014 4914 7.289084 TCCCTCTGTTACATAATGTAGTGCATA 59.711 37.037 0.00 0.00 36.67 3.14
3015 4915 8.097038 CCCTCTGTTACATAATGTAGTGCATAT 58.903 37.037 0.00 0.00 36.67 1.78
3049 4949 7.820044 TTTTAAAAGTCAAACATCGCAAACT 57.180 28.000 0.00 0.00 0.00 2.66
3050 4950 7.820044 TTTAAAAGTCAAACATCGCAAACTT 57.180 28.000 0.00 0.00 0.00 2.66
3051 4951 7.820044 TTAAAAGTCAAACATCGCAAACTTT 57.180 28.000 0.00 0.00 38.27 2.66
3052 4952 5.701029 AAAGTCAAACATCGCAAACTTTG 57.299 34.783 0.00 0.00 36.06 2.77
3053 4953 4.630894 AGTCAAACATCGCAAACTTTGA 57.369 36.364 5.65 0.00 31.68 2.69
3054 4954 5.186996 AGTCAAACATCGCAAACTTTGAT 57.813 34.783 5.65 0.00 35.61 2.57
3055 4955 5.591099 AGTCAAACATCGCAAACTTTGATT 58.409 33.333 5.65 0.00 35.61 2.57
3056 4956 5.459762 AGTCAAACATCGCAAACTTTGATTG 59.540 36.000 5.65 2.27 35.61 2.67
3057 4957 5.458452 GTCAAACATCGCAAACTTTGATTGA 59.542 36.000 5.65 0.59 35.61 2.57
3058 4958 5.686841 TCAAACATCGCAAACTTTGATTGAG 59.313 36.000 5.65 0.00 29.66 3.02
3059 4959 4.836125 ACATCGCAAACTTTGATTGAGT 57.164 36.364 5.65 0.00 0.00 3.41
3060 4960 5.186996 ACATCGCAAACTTTGATTGAGTT 57.813 34.783 5.65 0.00 38.92 3.01
3061 4961 5.591099 ACATCGCAAACTTTGATTGAGTTT 58.409 33.333 5.65 0.00 45.49 2.66
3062 4962 6.734137 ACATCGCAAACTTTGATTGAGTTTA 58.266 32.000 5.65 0.00 43.44 2.01
3063 4963 7.370383 ACATCGCAAACTTTGATTGAGTTTAT 58.630 30.769 5.65 0.00 43.44 1.40
3064 4964 7.326789 ACATCGCAAACTTTGATTGAGTTTATG 59.673 33.333 5.65 5.91 43.44 1.90
3065 4965 6.148948 TCGCAAACTTTGATTGAGTTTATGG 58.851 36.000 5.65 0.00 43.44 2.74
3066 4966 6.016693 TCGCAAACTTTGATTGAGTTTATGGA 60.017 34.615 5.65 0.00 43.44 3.41
3067 4967 6.306356 CGCAAACTTTGATTGAGTTTATGGAG 59.694 38.462 5.65 0.00 43.44 3.86
3068 4968 7.370383 GCAAACTTTGATTGAGTTTATGGAGA 58.630 34.615 5.65 0.00 43.44 3.71
3069 4969 7.867403 GCAAACTTTGATTGAGTTTATGGAGAA 59.133 33.333 5.65 0.00 43.44 2.87
3070 4970 9.748708 CAAACTTTGATTGAGTTTATGGAGAAA 57.251 29.630 2.32 0.00 43.44 2.52
3113 5013 9.970395 TGCCAAACATTTATCATTAGATTCATC 57.030 29.630 0.00 0.00 35.67 2.92
3114 5014 9.970395 GCCAAACATTTATCATTAGATTCATCA 57.030 29.630 0.00 0.00 35.67 3.07
3191 5091 9.793259 TTCTCTATAAACTTGGTCAAAGATTGT 57.207 29.630 0.00 0.00 39.38 2.71
3199 5099 8.702163 AACTTGGTCAAAGATTGTAAAGTTTG 57.298 30.769 0.00 0.00 39.38 2.93
3200 5100 7.264947 ACTTGGTCAAAGATTGTAAAGTTTGG 58.735 34.615 0.00 0.00 39.38 3.28
3201 5101 5.596845 TGGTCAAAGATTGTAAAGTTTGGC 58.403 37.500 0.00 0.00 37.50 4.52
3202 5102 5.127845 TGGTCAAAGATTGTAAAGTTTGGCA 59.872 36.000 0.00 0.00 39.03 4.92
3203 5103 6.183360 TGGTCAAAGATTGTAAAGTTTGGCAT 60.183 34.615 0.00 0.00 39.03 4.40
3204 5104 6.705825 GGTCAAAGATTGTAAAGTTTGGCATT 59.294 34.615 0.00 0.00 39.03 3.56
3205 5105 7.226523 GGTCAAAGATTGTAAAGTTTGGCATTT 59.773 33.333 0.00 0.00 39.03 2.32
3206 5106 9.255304 GTCAAAGATTGTAAAGTTTGGCATTTA 57.745 29.630 0.00 0.00 37.89 1.40
3207 5107 9.823647 TCAAAGATTGTAAAGTTTGGCATTTAA 57.176 25.926 0.00 0.00 35.51 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.892119 TGGAGGTTCTCTACACTAGGTTATG 59.108 44.000 0.00 0.00 29.60 1.90
3 4 5.525454 TGGAGGTTCTCTACACTAGGTTA 57.475 43.478 0.00 0.00 29.60 2.85
11 12 1.616865 CCAACGTGGAGGTTCTCTACA 59.383 52.381 11.02 0.00 41.12 2.74
12 13 1.617357 ACCAACGTGGAGGTTCTCTAC 59.383 52.381 10.46 1.98 40.96 2.59
13 14 1.616865 CACCAACGTGGAGGTTCTCTA 59.383 52.381 10.46 0.00 40.96 2.43
14 15 0.393077 CACCAACGTGGAGGTTCTCT 59.607 55.000 10.46 0.00 40.96 3.10
15 16 2.914379 CACCAACGTGGAGGTTCTC 58.086 57.895 10.46 0.00 40.96 2.87
24 25 1.289109 GATGTCGGACCACCAACGTG 61.289 60.000 5.55 0.00 39.91 4.49
25 26 1.005394 GATGTCGGACCACCAACGT 60.005 57.895 5.55 0.00 35.59 3.99
26 27 1.740296 GGATGTCGGACCACCAACG 60.740 63.158 5.55 0.00 35.59 4.10
27 28 1.376812 GGGATGTCGGACCACCAAC 60.377 63.158 17.80 3.39 35.59 3.77
28 29 1.204786 ATGGGATGTCGGACCACCAA 61.205 55.000 16.09 9.19 37.05 3.67
29 30 1.204786 AATGGGATGTCGGACCACCA 61.205 55.000 17.80 16.43 37.05 4.17
30 31 0.034477 AAATGGGATGTCGGACCACC 60.034 55.000 5.55 8.70 37.05 4.61
31 32 1.834188 AAAATGGGATGTCGGACCAC 58.166 50.000 5.55 0.00 37.05 4.16
32 33 2.682563 GCTAAAATGGGATGTCGGACCA 60.683 50.000 5.55 0.00 38.88 4.02
33 34 1.947456 GCTAAAATGGGATGTCGGACC 59.053 52.381 5.55 0.00 0.00 4.46
34 35 1.947456 GGCTAAAATGGGATGTCGGAC 59.053 52.381 0.00 0.00 0.00 4.79
35 36 1.474320 CGGCTAAAATGGGATGTCGGA 60.474 52.381 0.00 0.00 0.00 4.55
36 37 0.944386 CGGCTAAAATGGGATGTCGG 59.056 55.000 0.00 0.00 0.00 4.79
37 38 1.330521 CACGGCTAAAATGGGATGTCG 59.669 52.381 0.00 0.00 0.00 4.35
38 39 2.614057 CTCACGGCTAAAATGGGATGTC 59.386 50.000 0.00 0.00 0.00 3.06
39 40 2.643551 CTCACGGCTAAAATGGGATGT 58.356 47.619 0.00 0.00 0.00 3.06
40 41 1.334869 GCTCACGGCTAAAATGGGATG 59.665 52.381 0.00 0.00 38.06 3.51
41 42 1.680338 GCTCACGGCTAAAATGGGAT 58.320 50.000 0.00 0.00 38.06 3.85
42 43 0.742990 CGCTCACGGCTAAAATGGGA 60.743 55.000 0.00 0.00 39.13 4.37
43 44 0.742990 TCGCTCACGGCTAAAATGGG 60.743 55.000 0.00 0.00 40.63 4.00
44 45 1.299541 ATCGCTCACGGCTAAAATGG 58.700 50.000 0.00 0.00 40.63 3.16
45 46 2.351418 TCAATCGCTCACGGCTAAAATG 59.649 45.455 0.00 0.00 40.63 2.32
46 47 2.627945 TCAATCGCTCACGGCTAAAAT 58.372 42.857 0.00 0.00 40.63 1.82
47 48 2.087501 TCAATCGCTCACGGCTAAAA 57.912 45.000 0.00 0.00 40.63 1.52
48 49 2.201732 GATCAATCGCTCACGGCTAAA 58.798 47.619 0.00 0.00 40.63 1.85
49 50 1.852942 GATCAATCGCTCACGGCTAA 58.147 50.000 0.00 0.00 40.63 3.09
50 51 0.317854 CGATCAATCGCTCACGGCTA 60.318 55.000 0.00 0.00 43.84 3.93
51 52 1.589993 CGATCAATCGCTCACGGCT 60.590 57.895 0.00 0.00 43.84 5.52
52 53 2.923854 CGATCAATCGCTCACGGC 59.076 61.111 0.00 0.00 43.84 5.68
61 62 8.803201 TCAACACTAGATTATGTCGATCAATC 57.197 34.615 0.00 7.96 0.00 2.67
62 63 8.633561 TCTCAACACTAGATTATGTCGATCAAT 58.366 33.333 0.00 0.00 0.00 2.57
63 64 7.996385 TCTCAACACTAGATTATGTCGATCAA 58.004 34.615 0.00 0.00 0.00 2.57
64 65 7.568199 TCTCAACACTAGATTATGTCGATCA 57.432 36.000 0.00 0.00 0.00 2.92
65 66 9.123709 GATTCTCAACACTAGATTATGTCGATC 57.876 37.037 0.00 0.00 0.00 3.69
66 67 8.855110 AGATTCTCAACACTAGATTATGTCGAT 58.145 33.333 0.00 0.00 0.00 3.59
67 68 8.226819 AGATTCTCAACACTAGATTATGTCGA 57.773 34.615 0.00 0.00 0.00 4.20
68 69 7.593273 GGAGATTCTCAACACTAGATTATGTCG 59.407 40.741 15.36 0.00 31.08 4.35
69 70 8.417106 TGGAGATTCTCAACACTAGATTATGTC 58.583 37.037 15.36 0.00 31.08 3.06
70 71 8.311395 TGGAGATTCTCAACACTAGATTATGT 57.689 34.615 15.36 0.00 31.08 2.29
71 72 8.420222 ACTGGAGATTCTCAACACTAGATTATG 58.580 37.037 15.36 0.00 31.08 1.90
72 73 8.546083 ACTGGAGATTCTCAACACTAGATTAT 57.454 34.615 15.36 0.00 31.08 1.28
73 74 7.962995 ACTGGAGATTCTCAACACTAGATTA 57.037 36.000 15.36 0.00 31.08 1.75
74 75 6.865834 ACTGGAGATTCTCAACACTAGATT 57.134 37.500 15.36 0.00 31.08 2.40
75 76 6.865834 AACTGGAGATTCTCAACACTAGAT 57.134 37.500 15.36 0.00 31.08 1.98
76 77 6.459066 CAAACTGGAGATTCTCAACACTAGA 58.541 40.000 15.36 0.00 31.08 2.43
77 78 5.641209 CCAAACTGGAGATTCTCAACACTAG 59.359 44.000 15.36 6.05 40.96 2.57
78 79 5.071788 ACCAAACTGGAGATTCTCAACACTA 59.928 40.000 15.36 0.00 40.96 2.74
79 80 4.141390 ACCAAACTGGAGATTCTCAACACT 60.141 41.667 15.36 0.00 40.96 3.55
80 81 4.137543 ACCAAACTGGAGATTCTCAACAC 58.862 43.478 15.36 0.00 40.96 3.32
81 82 4.437682 ACCAAACTGGAGATTCTCAACA 57.562 40.909 15.36 4.50 40.96 3.33
82 83 4.022849 CCAACCAAACTGGAGATTCTCAAC 60.023 45.833 15.36 0.00 40.96 3.18
83 84 4.144297 CCAACCAAACTGGAGATTCTCAA 58.856 43.478 15.36 3.18 40.96 3.02
84 85 3.754965 CCAACCAAACTGGAGATTCTCA 58.245 45.455 15.36 1.53 40.96 3.27
85 86 2.489722 GCCAACCAAACTGGAGATTCTC 59.510 50.000 5.03 5.03 40.96 2.87
86 87 2.519013 GCCAACCAAACTGGAGATTCT 58.481 47.619 0.00 0.00 40.96 2.40
87 88 1.546029 GGCCAACCAAACTGGAGATTC 59.454 52.381 0.00 0.00 40.96 2.52
88 89 1.632589 GGCCAACCAAACTGGAGATT 58.367 50.000 0.00 0.00 40.96 2.40
89 90 0.609131 CGGCCAACCAAACTGGAGAT 60.609 55.000 2.24 0.00 40.96 2.75
90 91 1.228124 CGGCCAACCAAACTGGAGA 60.228 57.895 2.24 0.00 40.96 3.71
91 92 2.268076 CCGGCCAACCAAACTGGAG 61.268 63.158 2.24 0.00 40.96 3.86
92 93 2.203422 CCGGCCAACCAAACTGGA 60.203 61.111 2.24 0.00 40.96 3.86
93 94 3.989787 GCCGGCCAACCAAACTGG 61.990 66.667 18.11 0.00 45.02 4.00
94 95 3.989787 GGCCGGCCAACCAAACTG 61.990 66.667 40.73 0.00 34.57 3.16
103 104 4.108299 CACATACTGGGCCGGCCA 62.108 66.667 44.46 29.19 37.98 5.36
107 108 1.369091 GCTCAACACATACTGGGCCG 61.369 60.000 0.00 0.00 32.59 6.13
110 111 2.421073 CACATGCTCAACACATACTGGG 59.579 50.000 0.00 0.00 0.00 4.45
121 122 1.576451 ATTGCGACGCACATGCTCAA 61.576 50.000 24.42 5.40 38.71 3.02
122 123 1.969809 GATTGCGACGCACATGCTCA 61.970 55.000 24.42 6.27 38.71 4.26
127 128 1.371337 ATGCTGATTGCGACGCACAT 61.371 50.000 24.42 18.75 46.63 3.21
133 134 4.498241 TCCTATATGATGCTGATTGCGAC 58.502 43.478 0.00 0.00 46.63 5.19
136 137 4.841422 ACCTCCTATATGATGCTGATTGC 58.159 43.478 0.00 0.00 43.25 3.56
138 139 4.472833 GGGACCTCCTATATGATGCTGATT 59.527 45.833 0.00 0.00 35.95 2.57
145 146 3.564571 CGTCCAGGGACCTCCTATATGAT 60.565 52.174 12.66 0.00 46.12 2.45
177 178 4.866508 TGGTACTAAGTTGTGTCTCCAG 57.133 45.455 0.00 0.00 0.00 3.86
184 185 7.255569 TCGATACAAGATGGTACTAAGTTGTG 58.744 38.462 15.60 4.26 30.97 3.33
189 190 9.751542 ATTTTCTCGATACAAGATGGTACTAAG 57.248 33.333 0.00 0.00 0.00 2.18
221 222 8.995027 TTTGAGCAGTTCACCCATATTATTAT 57.005 30.769 0.00 0.00 34.94 1.28
222 223 8.271458 TCTTTGAGCAGTTCACCCATATTATTA 58.729 33.333 0.00 0.00 34.94 0.98
225 226 6.061022 TCTTTGAGCAGTTCACCCATATTA 57.939 37.500 0.00 0.00 34.94 0.98
228 229 4.365514 TTCTTTGAGCAGTTCACCCATA 57.634 40.909 0.00 0.00 34.94 2.74
232 233 4.067896 TCTGATTCTTTGAGCAGTTCACC 58.932 43.478 0.00 0.00 34.94 4.02
247 248 2.966050 AGGTCTGCGTTTCTCTGATTC 58.034 47.619 0.00 0.00 0.00 2.52
312 314 2.291089 ACCCAATAAATTTCGTCCGGGT 60.291 45.455 0.00 9.68 40.89 5.28
437 440 1.078143 GGAGGGCGCAGTGAGATTT 60.078 57.895 10.83 0.00 0.00 2.17
438 441 2.586792 GGAGGGCGCAGTGAGATT 59.413 61.111 10.83 0.00 0.00 2.40
455 458 3.433709 ACATTCATTTTGACGACGACG 57.566 42.857 5.58 5.58 45.75 5.12
490 493 6.073385 CGCTCAAACGGATGTATCTAGTACTA 60.073 42.308 1.89 1.89 34.27 1.82
528 531 9.784531 CAAAATAATCATGTACTACCTCCATCT 57.215 33.333 0.00 0.00 0.00 2.90
613 617 9.127277 ACAACATGTGGTAAATACTTGTACTTT 57.873 29.630 3.32 0.00 35.98 2.66
657 661 5.006153 ACTGGTTGATGAATCATTGCATG 57.994 39.130 0.00 0.00 36.56 4.06
693 697 5.970023 GTGCGTAGGTGTACTAGAAACATAG 59.030 44.000 0.00 0.00 30.77 2.23
714 718 6.632434 GCTTTAATTTTGTTCAAATGGTGTGC 59.368 34.615 0.00 0.00 35.09 4.57
719 723 9.018716 GGTTTTGCTTTAATTTTGTTCAAATGG 57.981 29.630 0.00 0.00 35.09 3.16
724 728 9.660180 AAGTAGGTTTTGCTTTAATTTTGTTCA 57.340 25.926 0.00 0.00 0.00 3.18
778 786 0.249996 ACACCGGAAAGTTGTACCCG 60.250 55.000 9.46 0.00 41.47 5.28
891 906 2.045242 GGACGGGAAGGGGCTTTC 60.045 66.667 0.00 0.00 0.00 2.62
892 907 2.531942 AGGACGGGAAGGGGCTTT 60.532 61.111 0.00 0.00 0.00 3.51
893 908 3.009714 GAGGACGGGAAGGGGCTT 61.010 66.667 0.00 0.00 0.00 4.35
980 1003 3.437795 CTGCTTGCTTCTGCCCCG 61.438 66.667 0.00 0.00 38.71 5.73
982 1005 0.394080 ATCTCTGCTTGCTTCTGCCC 60.394 55.000 0.00 0.00 38.71 5.36
1107 1144 1.739049 CATCAGGGTCTCGAGGAGC 59.261 63.158 13.56 8.89 41.31 4.70
1155 1192 3.557903 GAGCTTGGCTGCCACCTCA 62.558 63.158 29.46 14.87 39.88 3.86
1228 1265 1.301087 CCACGTTGTACGAGGCCAA 60.301 57.895 5.01 0.00 44.58 4.52
1435 1483 6.000219 AGTATATACTGAGCAAATGGGCAAG 59.000 40.000 14.71 0.00 34.72 4.01
1454 1502 6.595326 CCACATCTTTTGCAACAGAGAGTATA 59.405 38.462 19.32 0.00 0.00 1.47
1455 1503 5.413833 CCACATCTTTTGCAACAGAGAGTAT 59.586 40.000 19.32 1.03 0.00 2.12
1456 1504 4.756642 CCACATCTTTTGCAACAGAGAGTA 59.243 41.667 19.32 0.00 0.00 2.59
1457 1505 3.567164 CCACATCTTTTGCAACAGAGAGT 59.433 43.478 19.32 16.58 0.00 3.24
1526 3422 6.038714 CCTTGAGATAGTACCTGAAAAATGGC 59.961 42.308 0.00 0.00 0.00 4.40
2021 3917 3.998672 GTCGCCTCCGGGTTCACA 61.999 66.667 0.00 0.00 34.56 3.58
2165 4061 2.164017 TGCGTTGGCGTAGATGTAAGTA 59.836 45.455 0.00 0.00 44.10 2.24
2228 4124 2.961741 TGGATGCATCAGAGAGGTAGAC 59.038 50.000 27.25 6.62 0.00 2.59
2229 4125 2.961741 GTGGATGCATCAGAGAGGTAGA 59.038 50.000 27.25 0.00 0.00 2.59
2231 4127 2.042464 GGTGGATGCATCAGAGAGGTA 58.958 52.381 27.25 1.21 0.00 3.08
2232 4128 0.835941 GGTGGATGCATCAGAGAGGT 59.164 55.000 27.25 0.00 0.00 3.85
2235 4131 0.179702 GCAGGTGGATGCATCAGAGA 59.820 55.000 27.25 5.98 45.77 3.10
2286 4186 8.688747 AGATTGACTCAGAGAGTGAAATTTTT 57.311 30.769 3.79 0.00 43.53 1.94
2287 4187 9.784531 TTAGATTGACTCAGAGAGTGAAATTTT 57.215 29.630 3.79 1.64 43.53 1.82
2288 4188 9.784531 TTTAGATTGACTCAGAGAGTGAAATTT 57.215 29.630 3.79 0.00 43.53 1.82
2289 4189 9.784531 TTTTAGATTGACTCAGAGAGTGAAATT 57.215 29.630 3.79 0.00 43.53 1.82
2290 4190 9.956640 ATTTTAGATTGACTCAGAGAGTGAAAT 57.043 29.630 3.79 4.67 43.53 2.17
2291 4191 9.429359 GATTTTAGATTGACTCAGAGAGTGAAA 57.571 33.333 3.79 0.00 43.53 2.69
2292 4192 8.811017 AGATTTTAGATTGACTCAGAGAGTGAA 58.189 33.333 3.79 2.84 43.53 3.18
2308 4208 8.380644 CGACGACACAAACATTAGATTTTAGAT 58.619 33.333 0.00 0.00 0.00 1.98
2315 4215 5.867174 TCAATCGACGACACAAACATTAGAT 59.133 36.000 0.00 0.00 0.00 1.98
2352 4252 3.761218 TCAACCGACGGTTACTAATGGTA 59.239 43.478 30.64 1.86 45.01 3.25
2353 4253 2.562298 TCAACCGACGGTTACTAATGGT 59.438 45.455 30.64 3.92 45.01 3.55
2354 4254 3.235157 TCAACCGACGGTTACTAATGG 57.765 47.619 30.64 16.97 45.01 3.16
2355 4255 5.349270 TCAAATCAACCGACGGTTACTAATG 59.651 40.000 30.64 23.13 45.01 1.90
2356 4256 5.481105 TCAAATCAACCGACGGTTACTAAT 58.519 37.500 30.64 18.28 45.01 1.73
2357 4257 4.880759 TCAAATCAACCGACGGTTACTAA 58.119 39.130 30.64 16.94 45.01 2.24
2358 4258 4.517952 TCAAATCAACCGACGGTTACTA 57.482 40.909 30.64 19.32 45.01 1.82
2359 4259 3.389925 TCAAATCAACCGACGGTTACT 57.610 42.857 30.64 18.15 45.01 2.24
2360 4260 4.471157 TTTCAAATCAACCGACGGTTAC 57.529 40.909 30.64 0.00 45.01 2.50
2361 4261 4.515944 ACATTTCAAATCAACCGACGGTTA 59.484 37.500 30.64 19.06 45.01 2.85
2363 4263 2.882137 ACATTTCAAATCAACCGACGGT 59.118 40.909 15.37 15.37 37.65 4.83
2364 4264 3.552604 ACATTTCAAATCAACCGACGG 57.447 42.857 13.61 13.61 0.00 4.79
2365 4265 5.277601 AGTACATTTCAAATCAACCGACG 57.722 39.130 0.00 0.00 0.00 5.12
2366 4266 6.148150 TGGTAGTACATTTCAAATCAACCGAC 59.852 38.462 2.06 0.00 0.00 4.79
2367 4267 6.231951 TGGTAGTACATTTCAAATCAACCGA 58.768 36.000 2.06 0.00 0.00 4.69
2368 4268 6.489127 TGGTAGTACATTTCAAATCAACCG 57.511 37.500 2.06 0.00 0.00 4.44
2427 4327 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
2428 4328 1.481772 CAATAAACCCGGACGGAGGTA 59.518 52.381 13.13 1.24 34.45 3.08
2429 4329 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
2430 4330 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
2431 4331 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
2432 4332 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
2433 4333 0.745486 GGACCAATAAACCCGGACGG 60.745 60.000 0.73 3.25 37.81 4.79
2434 4334 0.745486 GGGACCAATAAACCCGGACG 60.745 60.000 0.73 0.00 34.03 4.79
2435 4335 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
2448 4348 4.635666 TGGCACAAAATACAATGGGGACC 61.636 47.826 0.00 0.00 45.01 4.46
2449 4349 2.564947 TGGCACAAAATACAATGGGGAC 59.435 45.455 0.00 0.00 31.92 4.46
2450 4350 2.894731 TGGCACAAAATACAATGGGGA 58.105 42.857 0.00 0.00 31.92 4.81
2464 4364 5.999205 ATCTATGGTCAAAATTTGGCACA 57.001 34.783 12.62 8.10 36.88 4.57
2465 4365 6.397272 TCAATCTATGGTCAAAATTTGGCAC 58.603 36.000 12.62 1.03 36.88 5.01
2466 4366 6.602410 TCAATCTATGGTCAAAATTTGGCA 57.398 33.333 12.62 0.00 36.88 4.92
2467 4367 7.099120 AGTTCAATCTATGGTCAAAATTTGGC 58.901 34.615 5.83 3.52 33.62 4.52
2476 4376 9.295825 ACATTTTGTTAGTTCAATCTATGGTCA 57.704 29.630 0.00 0.00 0.00 4.02
2487 4387 5.236655 TGCGTGAACATTTTGTTAGTTCA 57.763 34.783 0.00 0.00 46.53 3.18
2488 4388 5.685511 ACATGCGTGAACATTTTGTTAGTTC 59.314 36.000 14.17 0.00 41.28 3.01
2489 4389 5.587289 ACATGCGTGAACATTTTGTTAGTT 58.413 33.333 14.17 0.00 41.28 2.24
2490 4390 5.181690 ACATGCGTGAACATTTTGTTAGT 57.818 34.783 14.17 0.00 41.28 2.24
2491 4391 5.115472 GTGACATGCGTGAACATTTTGTTAG 59.885 40.000 14.17 0.00 41.28 2.34
2492 4392 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
2493 4393 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
2494 4394 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
2495 4395 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
2496 4396 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
2497 4397 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
2498 4398 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
2499 4399 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
2500 4400 1.064803 GTTTGGTGACATGCGTGAACA 59.935 47.619 14.17 9.53 42.32 3.18
2501 4401 1.064803 TGTTTGGTGACATGCGTGAAC 59.935 47.619 14.17 10.22 42.32 3.18
2502 4402 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
2503 4403 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
2504 4404 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
2505 4405 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
2506 4406 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
2507 4407 9.149225 TCAAAAATATAATGTTTGGTGACATGC 57.851 29.630 0.00 0.00 40.03 4.06
2531 4431 9.527157 TGGATTCCTATTTGAACATAGTTTTCA 57.473 29.630 3.95 0.00 0.00 2.69
2567 4467 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
2568 4468 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
2569 4469 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
2570 4470 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
2571 4471 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
2572 4472 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
2573 4473 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
2610 4510 9.757227 CCCTTTATAGTTTGTGTCAAATTTTGA 57.243 29.630 7.74 7.74 37.33 2.69
2611 4511 8.987890 CCCCTTTATAGTTTGTGTCAAATTTTG 58.012 33.333 2.59 2.59 0.00 2.44
2612 4512 8.929487 TCCCCTTTATAGTTTGTGTCAAATTTT 58.071 29.630 0.00 0.00 0.00 1.82
2613 4513 8.364894 GTCCCCTTTATAGTTTGTGTCAAATTT 58.635 33.333 0.00 0.00 0.00 1.82
2614 4514 7.308951 CGTCCCCTTTATAGTTTGTGTCAAATT 60.309 37.037 0.00 0.00 0.00 1.82
2615 4515 6.150474 CGTCCCCTTTATAGTTTGTGTCAAAT 59.850 38.462 0.00 0.00 0.00 2.32
2616 4516 5.470777 CGTCCCCTTTATAGTTTGTGTCAAA 59.529 40.000 0.00 0.00 0.00 2.69
2617 4517 4.998672 CGTCCCCTTTATAGTTTGTGTCAA 59.001 41.667 0.00 0.00 0.00 3.18
2618 4518 4.563993 CCGTCCCCTTTATAGTTTGTGTCA 60.564 45.833 0.00 0.00 0.00 3.58
2619 4519 3.937079 CCGTCCCCTTTATAGTTTGTGTC 59.063 47.826 0.00 0.00 0.00 3.67
2620 4520 3.583966 TCCGTCCCCTTTATAGTTTGTGT 59.416 43.478 0.00 0.00 0.00 3.72
2621 4521 3.937079 GTCCGTCCCCTTTATAGTTTGTG 59.063 47.826 0.00 0.00 0.00 3.33
2622 4522 3.054875 GGTCCGTCCCCTTTATAGTTTGT 60.055 47.826 0.00 0.00 0.00 2.83
2623 4523 3.199289 AGGTCCGTCCCCTTTATAGTTTG 59.801 47.826 0.00 0.00 36.75 2.93
2624 4524 3.457836 AGGTCCGTCCCCTTTATAGTTT 58.542 45.455 0.00 0.00 36.75 2.66
2625 4525 3.126323 AGGTCCGTCCCCTTTATAGTT 57.874 47.619 0.00 0.00 36.75 2.24
2626 4526 2.862850 AGGTCCGTCCCCTTTATAGT 57.137 50.000 0.00 0.00 36.75 2.12
2627 4527 6.295518 GGTTTATAGGTCCGTCCCCTTTATAG 60.296 46.154 0.00 0.00 36.75 1.31
2628 4528 5.543790 GGTTTATAGGTCCGTCCCCTTTATA 59.456 44.000 0.00 0.00 36.75 0.98
2629 4529 4.349048 GGTTTATAGGTCCGTCCCCTTTAT 59.651 45.833 0.00 0.00 36.75 1.40
2630 4530 3.711190 GGTTTATAGGTCCGTCCCCTTTA 59.289 47.826 0.00 0.00 36.75 1.85
2631 4531 2.507058 GGTTTATAGGTCCGTCCCCTTT 59.493 50.000 0.00 0.00 36.75 3.11
2632 4532 2.121948 GGTTTATAGGTCCGTCCCCTT 58.878 52.381 0.00 0.00 36.75 3.95
2633 4533 1.008693 TGGTTTATAGGTCCGTCCCCT 59.991 52.381 0.00 0.00 36.75 4.79
2634 4534 1.415289 CTGGTTTATAGGTCCGTCCCC 59.585 57.143 0.00 0.00 36.75 4.81
2635 4535 1.415289 CCTGGTTTATAGGTCCGTCCC 59.585 57.143 0.00 0.00 36.75 4.46
2636 4536 2.102084 GTCCTGGTTTATAGGTCCGTCC 59.898 54.545 0.00 0.00 36.67 4.79
2637 4537 2.223665 CGTCCTGGTTTATAGGTCCGTC 60.224 54.545 0.00 0.00 36.67 4.79
2638 4538 1.753073 CGTCCTGGTTTATAGGTCCGT 59.247 52.381 0.00 0.00 36.67 4.69
2639 4539 1.068127 CCGTCCTGGTTTATAGGTCCG 59.932 57.143 0.00 0.00 36.67 4.79
2640 4540 2.364647 CTCCGTCCTGGTTTATAGGTCC 59.635 54.545 0.00 0.00 39.52 4.46
2641 4541 3.294214 TCTCCGTCCTGGTTTATAGGTC 58.706 50.000 0.00 0.00 39.52 3.85
2642 4542 3.393426 TCTCCGTCCTGGTTTATAGGT 57.607 47.619 0.00 0.00 39.52 3.08
2643 4543 5.078256 ACTATCTCCGTCCTGGTTTATAGG 58.922 45.833 0.00 0.00 39.52 2.57
2644 4544 6.150809 GGTACTATCTCCGTCCTGGTTTATAG 59.849 46.154 0.00 0.00 39.52 1.31
2645 4545 6.006449 GGTACTATCTCCGTCCTGGTTTATA 58.994 44.000 0.00 0.00 39.52 0.98
2646 4546 4.831710 GGTACTATCTCCGTCCTGGTTTAT 59.168 45.833 0.00 0.00 39.52 1.40
2647 4547 4.079558 AGGTACTATCTCCGTCCTGGTTTA 60.080 45.833 0.00 0.00 36.02 2.01
2648 4548 3.029570 GGTACTATCTCCGTCCTGGTTT 58.970 50.000 0.00 0.00 39.52 3.27
2649 4549 2.244252 AGGTACTATCTCCGTCCTGGTT 59.756 50.000 0.00 0.00 36.02 3.67
2650 4550 1.851653 AGGTACTATCTCCGTCCTGGT 59.148 52.381 0.00 0.00 36.02 4.00
2651 4551 2.660670 AGGTACTATCTCCGTCCTGG 57.339 55.000 0.00 0.00 36.02 4.45
2652 4552 7.498570 GGTATATAAGGTACTATCTCCGTCCTG 59.501 44.444 0.00 0.00 38.49 3.86
2653 4553 7.405565 AGGTATATAAGGTACTATCTCCGTCCT 59.594 40.741 0.00 0.00 38.49 3.85
2654 4554 7.572814 AGGTATATAAGGTACTATCTCCGTCC 58.427 42.308 0.00 0.00 38.49 4.79
2692 4592 9.601217 GCATGTTAGGATACATAAGGTAATAGG 57.399 37.037 0.00 0.00 36.64 2.57
2695 4595 9.507329 CTTGCATGTTAGGATACATAAGGTAAT 57.493 33.333 0.00 0.00 36.64 1.89
2696 4596 7.444183 GCTTGCATGTTAGGATACATAAGGTAA 59.556 37.037 1.14 0.00 36.64 2.85
2697 4597 6.934645 GCTTGCATGTTAGGATACATAAGGTA 59.065 38.462 1.14 0.00 36.64 3.08
2698 4598 5.765182 GCTTGCATGTTAGGATACATAAGGT 59.235 40.000 1.14 0.00 36.64 3.50
2699 4599 5.764686 TGCTTGCATGTTAGGATACATAAGG 59.235 40.000 1.14 0.00 36.64 2.69
2700 4600 6.866010 TGCTTGCATGTTAGGATACATAAG 57.134 37.500 1.14 0.00 36.64 1.73
2701 4601 6.772233 ACATGCTTGCATGTTAGGATACATAA 59.228 34.615 28.83 0.00 42.56 1.90
2702 4602 6.298361 ACATGCTTGCATGTTAGGATACATA 58.702 36.000 28.83 0.00 42.56 2.29
2703 4603 5.135383 ACATGCTTGCATGTTAGGATACAT 58.865 37.500 28.83 8.39 42.56 2.29
2704 4604 4.525996 ACATGCTTGCATGTTAGGATACA 58.474 39.130 28.83 0.00 42.56 2.29
2705 4605 4.576053 TGACATGCTTGCATGTTAGGATAC 59.424 41.667 32.76 21.73 44.88 2.24
2706 4606 4.576053 GTGACATGCTTGCATGTTAGGATA 59.424 41.667 32.76 17.24 44.88 2.59
2707 4607 3.379372 GTGACATGCTTGCATGTTAGGAT 59.621 43.478 32.76 15.80 44.88 3.24
2708 4608 2.749076 GTGACATGCTTGCATGTTAGGA 59.251 45.455 32.76 18.95 44.88 2.94
2709 4609 2.159338 GGTGACATGCTTGCATGTTAGG 60.159 50.000 32.76 13.66 44.88 2.69
2710 4610 2.751259 AGGTGACATGCTTGCATGTTAG 59.249 45.455 32.76 13.98 44.88 2.34
2711 4611 2.749076 GAGGTGACATGCTTGCATGTTA 59.251 45.455 32.76 27.98 44.88 2.41
2712 4612 1.542915 GAGGTGACATGCTTGCATGTT 59.457 47.619 32.76 21.55 44.88 2.71
2714 4614 1.135489 GTGAGGTGACATGCTTGCATG 60.135 52.381 27.64 27.64 38.46 4.06
2715 4615 1.171308 GTGAGGTGACATGCTTGCAT 58.829 50.000 1.81 1.81 0.00 3.96
2716 4616 0.179023 TGTGAGGTGACATGCTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
2717 4617 0.953727 TTGTGAGGTGACATGCTTGC 59.046 50.000 0.00 0.00 0.00 4.01
2718 4618 3.928727 AATTGTGAGGTGACATGCTTG 57.071 42.857 0.00 0.00 0.00 4.01
2719 4619 5.255687 TCATAATTGTGAGGTGACATGCTT 58.744 37.500 0.03 0.00 0.00 3.91
2720 4620 4.847198 TCATAATTGTGAGGTGACATGCT 58.153 39.130 0.03 0.00 0.00 3.79
2721 4621 5.165911 CTCATAATTGTGAGGTGACATGC 57.834 43.478 21.11 0.00 41.49 4.06
2731 4631 6.291377 GGCCTTATCTCACTCATAATTGTGA 58.709 40.000 4.71 4.71 40.39 3.58
2732 4632 5.471456 GGGCCTTATCTCACTCATAATTGTG 59.529 44.000 0.84 0.00 35.68 3.33
2733 4633 5.132648 TGGGCCTTATCTCACTCATAATTGT 59.867 40.000 4.53 0.00 0.00 2.71
2734 4634 5.624159 TGGGCCTTATCTCACTCATAATTG 58.376 41.667 4.53 0.00 0.00 2.32
2735 4635 5.912149 TGGGCCTTATCTCACTCATAATT 57.088 39.130 4.53 0.00 0.00 1.40
2736 4636 5.045286 GGATGGGCCTTATCTCACTCATAAT 60.045 44.000 16.54 0.00 0.00 1.28
2737 4637 4.287067 GGATGGGCCTTATCTCACTCATAA 59.713 45.833 16.54 0.00 0.00 1.90
2738 4638 3.840666 GGATGGGCCTTATCTCACTCATA 59.159 47.826 16.54 0.00 0.00 2.15
2739 4639 2.641815 GGATGGGCCTTATCTCACTCAT 59.358 50.000 16.54 2.62 0.00 2.90
2740 4640 2.050144 GGATGGGCCTTATCTCACTCA 58.950 52.381 16.54 0.00 0.00 3.41
2741 4641 2.849294 GGATGGGCCTTATCTCACTC 57.151 55.000 16.54 1.09 0.00 3.51
2754 4654 4.514781 CATGATTGCACATTAGGATGGG 57.485 45.455 0.00 0.00 39.78 4.00
2767 4667 4.252073 TGGTTTTTACCATGCATGATTGC 58.748 39.130 28.31 10.42 41.16 3.56
2768 4668 5.933463 AGTTGGTTTTTACCATGCATGATTG 59.067 36.000 28.31 13.75 39.86 2.67
2769 4669 6.112927 AGTTGGTTTTTACCATGCATGATT 57.887 33.333 28.31 16.18 39.86 2.57
2770 4670 5.743636 AGTTGGTTTTTACCATGCATGAT 57.256 34.783 28.31 14.61 39.86 2.45
2771 4671 6.656632 TTAGTTGGTTTTTACCATGCATGA 57.343 33.333 28.31 6.08 39.86 3.07
2772 4672 6.147000 GGTTTAGTTGGTTTTTACCATGCATG 59.853 38.462 20.19 20.19 39.86 4.06
2773 4673 6.183361 TGGTTTAGTTGGTTTTTACCATGCAT 60.183 34.615 0.00 0.00 39.86 3.96
2774 4674 5.128827 TGGTTTAGTTGGTTTTTACCATGCA 59.871 36.000 0.00 0.00 39.86 3.96
2775 4675 5.602628 TGGTTTAGTTGGTTTTTACCATGC 58.397 37.500 0.00 0.00 39.86 4.06
2776 4676 7.928706 TGAATGGTTTAGTTGGTTTTTACCATG 59.071 33.333 0.00 0.00 42.40 3.66
2777 4677 8.024145 TGAATGGTTTAGTTGGTTTTTACCAT 57.976 30.769 0.00 0.00 44.43 3.55
2778 4678 7.419711 TGAATGGTTTAGTTGGTTTTTACCA 57.580 32.000 0.00 0.00 38.43 3.25
2779 4679 8.896320 ATTGAATGGTTTAGTTGGTTTTTACC 57.104 30.769 0.00 0.00 0.00 2.85
2780 4680 9.535878 TGATTGAATGGTTTAGTTGGTTTTTAC 57.464 29.630 0.00 0.00 0.00 2.01
2783 4683 9.705290 GTATGATTGAATGGTTTAGTTGGTTTT 57.295 29.630 0.00 0.00 0.00 2.43
2784 4684 8.865090 TGTATGATTGAATGGTTTAGTTGGTTT 58.135 29.630 0.00 0.00 0.00 3.27
2785 4685 8.415950 TGTATGATTGAATGGTTTAGTTGGTT 57.584 30.769 0.00 0.00 0.00 3.67
2786 4686 8.469200 CATGTATGATTGAATGGTTTAGTTGGT 58.531 33.333 0.00 0.00 0.00 3.67
2787 4687 7.922278 CCATGTATGATTGAATGGTTTAGTTGG 59.078 37.037 0.00 0.00 35.78 3.77
2788 4688 8.685427 TCCATGTATGATTGAATGGTTTAGTTG 58.315 33.333 0.00 0.00 40.44 3.16
2789 4689 8.821686 TCCATGTATGATTGAATGGTTTAGTT 57.178 30.769 0.00 0.00 40.44 2.24
2790 4690 8.274322 TCTCCATGTATGATTGAATGGTTTAGT 58.726 33.333 0.00 0.00 40.44 2.24
2791 4691 8.681486 TCTCCATGTATGATTGAATGGTTTAG 57.319 34.615 0.00 0.00 40.44 1.85
2792 4692 9.473007 TTTCTCCATGTATGATTGAATGGTTTA 57.527 29.630 0.00 0.00 40.44 2.01
2793 4693 7.959658 TTCTCCATGTATGATTGAATGGTTT 57.040 32.000 0.00 0.00 40.44 3.27
2794 4694 7.959658 TTTCTCCATGTATGATTGAATGGTT 57.040 32.000 0.00 0.00 40.44 3.67
2795 4695 7.562454 ACATTTCTCCATGTATGATTGAATGGT 59.438 33.333 0.00 0.00 40.44 3.55
2796 4696 7.948357 ACATTTCTCCATGTATGATTGAATGG 58.052 34.615 0.00 0.00 40.85 3.16
2797 4697 9.811995 AAACATTTCTCCATGTATGATTGAATG 57.188 29.630 0.00 0.00 36.30 2.67
2800 4700 9.859427 GAAAAACATTTCTCCATGTATGATTGA 57.141 29.630 0.00 0.00 36.30 2.57
2801 4701 9.642327 TGAAAAACATTTCTCCATGTATGATTG 57.358 29.630 3.31 0.00 36.30 2.67
2932 4832 9.092876 GTTGTTGTGAGAATTGGTTGATAAAAA 57.907 29.630 0.00 0.00 0.00 1.94
2933 4833 8.253810 TGTTGTTGTGAGAATTGGTTGATAAAA 58.746 29.630 0.00 0.00 0.00 1.52
2934 4834 7.776107 TGTTGTTGTGAGAATTGGTTGATAAA 58.224 30.769 0.00 0.00 0.00 1.40
2935 4835 7.340122 TGTTGTTGTGAGAATTGGTTGATAA 57.660 32.000 0.00 0.00 0.00 1.75
2936 4836 6.951062 TGTTGTTGTGAGAATTGGTTGATA 57.049 33.333 0.00 0.00 0.00 2.15
2937 4837 5.850557 TGTTGTTGTGAGAATTGGTTGAT 57.149 34.783 0.00 0.00 0.00 2.57
2938 4838 5.126869 ACATGTTGTTGTGAGAATTGGTTGA 59.873 36.000 0.00 0.00 0.00 3.18
2939 4839 5.350633 ACATGTTGTTGTGAGAATTGGTTG 58.649 37.500 0.00 0.00 0.00 3.77
2940 4840 5.596836 ACATGTTGTTGTGAGAATTGGTT 57.403 34.783 0.00 0.00 0.00 3.67
2950 4850 3.826157 AGAATACCCCACATGTTGTTGTG 59.174 43.478 0.00 0.00 45.28 3.33
2951 4851 4.112634 AGAATACCCCACATGTTGTTGT 57.887 40.909 0.00 0.00 0.00 3.32
2952 4852 7.873719 TTATAGAATACCCCACATGTTGTTG 57.126 36.000 0.00 0.00 0.00 3.33
2982 4882 9.570468 CTACATTATGTAACAGAGGGAGTAGTA 57.430 37.037 6.52 0.00 31.67 1.82
2983 4883 8.060075 ACTACATTATGTAACAGAGGGAGTAGT 58.940 37.037 6.52 0.00 31.67 2.73
2984 4884 8.353684 CACTACATTATGTAACAGAGGGAGTAG 58.646 40.741 6.52 0.00 31.67 2.57
2985 4885 7.201884 GCACTACATTATGTAACAGAGGGAGTA 60.202 40.741 6.52 0.00 31.67 2.59
2986 4886 6.407074 GCACTACATTATGTAACAGAGGGAGT 60.407 42.308 6.52 0.00 31.67 3.85
2987 4887 5.986135 GCACTACATTATGTAACAGAGGGAG 59.014 44.000 6.52 0.00 31.67 4.30
2988 4888 5.423931 TGCACTACATTATGTAACAGAGGGA 59.576 40.000 6.52 0.00 31.67 4.20
2989 4889 5.670485 TGCACTACATTATGTAACAGAGGG 58.330 41.667 6.52 0.00 31.67 4.30
3024 4924 8.245701 AGTTTGCGATGTTTGACTTTTAAAAA 57.754 26.923 1.66 0.00 0.00 1.94
3025 4925 7.820044 AGTTTGCGATGTTTGACTTTTAAAA 57.180 28.000 0.00 0.00 0.00 1.52
3026 4926 7.820044 AAGTTTGCGATGTTTGACTTTTAAA 57.180 28.000 0.00 0.00 0.00 1.52
3027 4927 7.542477 TCAAAGTTTGCGATGTTTGACTTTTAA 59.458 29.630 10.90 0.00 35.75 1.52
3028 4928 7.030165 TCAAAGTTTGCGATGTTTGACTTTTA 58.970 30.769 10.90 0.00 35.75 1.52
3029 4929 5.866633 TCAAAGTTTGCGATGTTTGACTTTT 59.133 32.000 10.90 0.00 35.75 2.27
3030 4930 5.406649 TCAAAGTTTGCGATGTTTGACTTT 58.593 33.333 10.90 1.43 37.70 2.66
3031 4931 4.992688 TCAAAGTTTGCGATGTTTGACTT 58.007 34.783 10.90 0.00 34.72 3.01
3032 4932 4.630894 TCAAAGTTTGCGATGTTTGACT 57.369 36.364 10.90 0.00 34.72 3.41
3033 4933 5.458452 TCAATCAAAGTTTGCGATGTTTGAC 59.542 36.000 10.90 0.00 40.67 3.18
3034 4934 5.586339 TCAATCAAAGTTTGCGATGTTTGA 58.414 33.333 10.90 11.68 41.74 2.69
3035 4935 5.459762 ACTCAATCAAAGTTTGCGATGTTTG 59.540 36.000 10.90 7.52 0.00 2.93
3036 4936 5.591099 ACTCAATCAAAGTTTGCGATGTTT 58.409 33.333 10.90 0.00 0.00 2.83
3037 4937 5.186996 ACTCAATCAAAGTTTGCGATGTT 57.813 34.783 10.90 0.00 0.00 2.71
3038 4938 4.836125 ACTCAATCAAAGTTTGCGATGT 57.164 36.364 10.90 3.54 0.00 3.06
3039 4939 7.201376 CCATAAACTCAATCAAAGTTTGCGATG 60.201 37.037 10.90 9.23 44.47 3.84
3040 4940 6.808212 CCATAAACTCAATCAAAGTTTGCGAT 59.192 34.615 10.90 0.00 44.47 4.58
3041 4941 6.016693 TCCATAAACTCAATCAAAGTTTGCGA 60.017 34.615 10.90 6.41 44.47 5.10
3042 4942 6.148948 TCCATAAACTCAATCAAAGTTTGCG 58.851 36.000 10.90 2.34 44.47 4.85
3043 4943 7.370383 TCTCCATAAACTCAATCAAAGTTTGC 58.630 34.615 10.90 0.00 44.47 3.68
3044 4944 9.748708 TTTCTCCATAAACTCAATCAAAGTTTG 57.251 29.630 9.44 9.44 44.47 2.93
3076 4976 9.625747 TGATAAATGTTTGGCATTCTAGATGTA 57.374 29.630 0.00 0.00 46.29 2.29
3077 4977 8.523915 TGATAAATGTTTGGCATTCTAGATGT 57.476 30.769 0.00 0.00 46.29 3.06
3078 4978 9.976511 AATGATAAATGTTTGGCATTCTAGATG 57.023 29.630 0.00 0.00 46.29 2.90
3087 4987 9.970395 GATGAATCTAATGATAAATGTTTGGCA 57.030 29.630 0.00 0.00 31.70 4.92
3088 4988 9.970395 TGATGAATCTAATGATAAATGTTTGGC 57.030 29.630 0.00 0.00 31.70 4.52
3165 5065 9.793259 ACAATCTTTGACCAAGTTTATAGAGAA 57.207 29.630 0.00 0.00 33.66 2.87
3173 5073 9.150348 CAAACTTTACAATCTTTGACCAAGTTT 57.850 29.630 15.24 15.24 41.96 2.66
3174 5074 7.763985 CCAAACTTTACAATCTTTGACCAAGTT 59.236 33.333 0.00 0.00 38.29 2.66
3175 5075 7.264947 CCAAACTTTACAATCTTTGACCAAGT 58.735 34.615 0.00 0.00 33.66 3.16
3176 5076 6.200854 GCCAAACTTTACAATCTTTGACCAAG 59.799 38.462 0.00 0.00 0.00 3.61
3177 5077 6.045955 GCCAAACTTTACAATCTTTGACCAA 58.954 36.000 0.00 0.00 0.00 3.67
3178 5078 5.127845 TGCCAAACTTTACAATCTTTGACCA 59.872 36.000 0.00 0.00 0.00 4.02
3179 5079 5.596845 TGCCAAACTTTACAATCTTTGACC 58.403 37.500 0.00 0.00 0.00 4.02
3180 5080 7.713764 AATGCCAAACTTTACAATCTTTGAC 57.286 32.000 0.00 0.00 0.00 3.18
3181 5081 9.823647 TTAAATGCCAAACTTTACAATCTTTGA 57.176 25.926 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.