Multiple sequence alignment - TraesCS3B01G611400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G611400 chr3B 100.000 2330 0 0 1 2330 829245632 829247961 0.000000e+00 4303
1 TraesCS3B01G611400 chr3D 85.806 782 48 20 912 1664 611527657 611528404 0.000000e+00 771
2 TraesCS3B01G611400 chr3D 90.054 553 32 8 1691 2222 611528398 611528948 0.000000e+00 695
3 TraesCS3B01G611400 chr3D 89.930 427 29 8 1 414 611526629 611527054 2.630000e-149 538
4 TraesCS3B01G611400 chr3D 89.106 358 28 9 411 767 611527129 611527476 3.560000e-118 435
5 TraesCS3B01G611400 chr3D 87.768 327 20 8 952 1270 611693967 611693653 4.730000e-97 364
6 TraesCS3B01G611400 chr3A 83.671 839 60 38 994 1800 746297590 746298383 0.000000e+00 719
7 TraesCS3B01G611400 chr3A 90.365 301 19 8 413 712 746297051 746297342 1.010000e-103 387
8 TraesCS3B01G611400 chr3A 93.137 204 14 0 1 204 746294766 746294969 1.350000e-77 300
9 TraesCS3B01G611400 chr3A 79.692 389 51 19 1815 2197 746298826 746299192 2.970000e-64 255
10 TraesCS3B01G611400 chr3A 87.719 228 13 5 200 414 746296748 746296973 3.840000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G611400 chr3B 829245632 829247961 2329 False 4303.00 4303 100.0000 1 2330 1 chr3B.!!$F1 2329
1 TraesCS3B01G611400 chr3D 611526629 611528948 2319 False 609.75 771 88.7240 1 2222 4 chr3D.!!$F1 2221
2 TraesCS3B01G611400 chr3A 746294766 746299192 4426 False 382.60 719 86.9168 1 2197 5 chr3A.!!$F1 2196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 2825 0.108329 CGGCGAATAGGAGTGGTTGT 60.108 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 4703 0.035056 ACCACCAGCAGGCATAACTC 60.035 55.0 0.0 0.0 39.06 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 5.124036 AGTGAGAGGCTATCTAGTCAACT 57.876 43.478 10.89 1.29 38.84 3.16
129 131 4.005650 CACTGCAACTCATACAGGAACAT 58.994 43.478 0.00 0.00 35.70 2.71
161 163 4.269183 TGGCGTTCAATGAATAGGAACAT 58.731 39.130 0.00 0.00 40.62 2.71
171 173 5.079689 TGAATAGGAACATGTTGCGTCTA 57.920 39.130 22.31 11.44 35.97 2.59
183 185 4.503910 TGTTGCGTCTATAAGCAGTTGAT 58.496 39.130 0.00 0.00 44.72 2.57
195 197 0.994995 CAGTTGATGCTCGAGGAACG 59.005 55.000 11.77 0.00 44.09 3.95
420 2296 7.447374 TGTTCGTGATATTGAAAATGTTCCT 57.553 32.000 0.00 0.00 32.28 3.36
469 2345 9.103861 GGGTTTCAAAGAAATGTTTGTGAATTA 57.896 29.630 3.38 0.00 38.38 1.40
505 2381 9.760660 TTTTGTTATTTTGAAAAATGTTCACGG 57.239 25.926 10.56 0.00 38.90 4.94
637 2513 8.939929 TGTTTGCAAATTTGTAAGAAATGTTCA 58.060 25.926 16.21 0.00 34.36 3.18
720 2596 6.980593 TCGATGAAAACTGATGGACATTTTT 58.019 32.000 0.00 0.00 41.63 1.94
829 2750 3.454371 CGAAACCGGAAGTGGATCTAT 57.546 47.619 9.46 0.00 0.00 1.98
841 2762 2.370189 GTGGATCTATGCTACTTGGGCT 59.630 50.000 0.00 0.00 0.00 5.19
848 2769 2.187946 CTACTTGGGCTGGCCGAG 59.812 66.667 30.28 30.28 36.85 4.63
849 2770 3.391665 CTACTTGGGCTGGCCGAGG 62.392 68.421 33.47 17.99 36.85 4.63
861 2782 4.003788 CCGAGGGTGGTTGCTCGT 62.004 66.667 0.00 0.00 37.60 4.18
863 2784 1.597027 CGAGGGTGGTTGCTCGTTT 60.597 57.895 0.00 0.00 34.99 3.60
865 2786 1.515521 GAGGGTGGTTGCTCGTTTGG 61.516 60.000 0.00 0.00 0.00 3.28
867 2788 1.652563 GGTGGTTGCTCGTTTGGTC 59.347 57.895 0.00 0.00 0.00 4.02
868 2789 1.278637 GTGGTTGCTCGTTTGGTCG 59.721 57.895 0.00 0.00 0.00 4.79
869 2790 1.144276 TGGTTGCTCGTTTGGTCGA 59.856 52.632 0.00 0.00 38.19 4.20
870 2791 1.155424 TGGTTGCTCGTTTGGTCGAC 61.155 55.000 7.13 7.13 35.91 4.20
873 2794 0.179094 TTGCTCGTTTGGTCGACAGT 60.179 50.000 18.91 0.00 35.91 3.55
876 2797 1.454653 GCTCGTTTGGTCGACAGTTAC 59.545 52.381 18.91 8.41 35.91 2.50
877 2798 2.056577 CTCGTTTGGTCGACAGTTACC 58.943 52.381 18.91 0.00 35.91 2.85
879 2800 1.523934 CGTTTGGTCGACAGTTACCAC 59.476 52.381 18.91 2.84 45.31 4.16
882 2803 2.291209 TGGTCGACAGTTACCACCTA 57.709 50.000 18.91 0.00 40.84 3.08
883 2804 1.888512 TGGTCGACAGTTACCACCTAC 59.111 52.381 18.91 0.00 40.84 3.18
884 2805 1.135575 GGTCGACAGTTACCACCTACG 60.136 57.143 18.91 0.00 35.73 3.51
885 2806 0.523072 TCGACAGTTACCACCTACGC 59.477 55.000 0.00 0.00 0.00 4.42
886 2807 0.795735 CGACAGTTACCACCTACGCG 60.796 60.000 3.53 3.53 0.00 6.01
887 2808 0.457337 GACAGTTACCACCTACGCGG 60.457 60.000 12.47 0.00 39.35 6.46
889 2810 2.882301 GTTACCACCTACGCGGCG 60.882 66.667 22.36 22.36 35.61 6.46
890 2811 3.061231 TTACCACCTACGCGGCGA 61.061 61.111 30.94 11.74 35.61 5.54
891 2812 2.634476 TTACCACCTACGCGGCGAA 61.634 57.895 30.94 7.11 35.61 4.70
892 2813 1.947597 TTACCACCTACGCGGCGAAT 61.948 55.000 30.94 10.38 35.61 3.34
894 2815 1.660575 CCACCTACGCGGCGAATAG 60.661 63.158 30.94 19.90 35.61 1.73
895 2816 1.660575 CACCTACGCGGCGAATAGG 60.661 63.158 30.94 28.89 41.21 2.57
897 2818 1.081376 CCTACGCGGCGAATAGGAG 60.081 63.158 30.94 14.30 38.20 3.69
898 2819 1.653115 CTACGCGGCGAATAGGAGT 59.347 57.895 30.94 6.22 0.00 3.85
899 2820 0.660595 CTACGCGGCGAATAGGAGTG 60.661 60.000 30.94 3.94 0.00 3.51
900 2821 2.067091 TACGCGGCGAATAGGAGTGG 62.067 60.000 30.94 0.00 0.00 4.00
901 2822 2.499685 GCGGCGAATAGGAGTGGT 59.500 61.111 12.98 0.00 0.00 4.16
902 2823 1.153429 GCGGCGAATAGGAGTGGTT 60.153 57.895 12.98 0.00 0.00 3.67
903 2824 1.429148 GCGGCGAATAGGAGTGGTTG 61.429 60.000 12.98 0.00 0.00 3.77
904 2825 0.108329 CGGCGAATAGGAGTGGTTGT 60.108 55.000 0.00 0.00 0.00 3.32
905 2826 1.369625 GGCGAATAGGAGTGGTTGTG 58.630 55.000 0.00 0.00 0.00 3.33
910 2831 3.600388 GAATAGGAGTGGTTGTGACTGG 58.400 50.000 0.00 0.00 0.00 4.00
926 2847 1.421646 ACTGGAGGTGGGTTTTCTCAG 59.578 52.381 0.00 0.00 0.00 3.35
977 2906 2.682155 CGGAGGGGAAAGAAAGAGAG 57.318 55.000 0.00 0.00 0.00 3.20
978 2907 2.180276 CGGAGGGGAAAGAAAGAGAGA 58.820 52.381 0.00 0.00 0.00 3.10
979 2908 2.167487 CGGAGGGGAAAGAAAGAGAGAG 59.833 54.545 0.00 0.00 0.00 3.20
980 2909 2.093181 GGAGGGGAAAGAAAGAGAGAGC 60.093 54.545 0.00 0.00 0.00 4.09
981 2910 1.552792 AGGGGAAAGAAAGAGAGAGCG 59.447 52.381 0.00 0.00 0.00 5.03
982 2911 1.550976 GGGGAAAGAAAGAGAGAGCGA 59.449 52.381 0.00 0.00 0.00 4.93
983 2912 2.418060 GGGGAAAGAAAGAGAGAGCGAG 60.418 54.545 0.00 0.00 0.00 5.03
984 2913 2.494073 GGGAAAGAAAGAGAGAGCGAGA 59.506 50.000 0.00 0.00 0.00 4.04
985 2914 3.428862 GGGAAAGAAAGAGAGAGCGAGAG 60.429 52.174 0.00 0.00 0.00 3.20
986 2915 3.442273 GGAAAGAAAGAGAGAGCGAGAGA 59.558 47.826 0.00 0.00 0.00 3.10
1027 2956 1.086634 GGTGGATCTGTCGAAGCTGC 61.087 60.000 0.00 0.00 0.00 5.25
1109 3041 2.472029 TCCACCTCATCTCCTTCCTTC 58.528 52.381 0.00 0.00 0.00 3.46
1119 3051 1.162951 TCCTTCCTTCCTCCCCTCCT 61.163 60.000 0.00 0.00 0.00 3.69
1263 3204 2.976494 AAGCCCCCAACAAGGTCACG 62.976 60.000 0.00 0.00 34.66 4.35
1296 3242 4.687215 GACAGCACCAGCCTCGCA 62.687 66.667 0.00 0.00 43.56 5.10
1341 3296 4.668636 AGATCAGATAGGTAGCTGGGTAC 58.331 47.826 4.27 1.80 39.98 3.34
1346 3301 3.142217 AGATAGGTAGCTGGGTACATGGA 59.858 47.826 4.27 0.00 0.00 3.41
1347 3302 2.496679 AGGTAGCTGGGTACATGGAT 57.503 50.000 11.25 0.00 0.00 3.41
1348 3303 2.050144 AGGTAGCTGGGTACATGGATG 58.950 52.381 11.25 0.00 0.00 3.51
1349 3304 2.047061 GGTAGCTGGGTACATGGATGA 58.953 52.381 11.25 0.00 0.00 2.92
1350 3305 2.037772 GGTAGCTGGGTACATGGATGAG 59.962 54.545 11.25 0.00 0.00 2.90
1351 3306 1.885049 AGCTGGGTACATGGATGAGT 58.115 50.000 0.00 0.00 0.00 3.41
1352 3307 2.200081 AGCTGGGTACATGGATGAGTT 58.800 47.619 0.00 0.00 0.00 3.01
1353 3308 3.384168 AGCTGGGTACATGGATGAGTTA 58.616 45.455 0.00 0.00 0.00 2.24
1354 3309 3.134804 AGCTGGGTACATGGATGAGTTAC 59.865 47.826 0.00 0.00 0.00 2.50
1362 3317 6.924060 GGTACATGGATGAGTTACATGAGTAC 59.076 42.308 10.47 4.16 43.46 2.73
1395 3350 6.988522 TCTTTTATTTTGCCCTGTTTACCTC 58.011 36.000 0.00 0.00 0.00 3.85
1420 3390 4.932799 ACCGATCGATCTATCTCTGTGTAG 59.067 45.833 22.43 2.83 0.00 2.74
1512 3482 5.544176 TGTCTCTCTGAAGGTAGGAAATTGT 59.456 40.000 0.00 0.00 0.00 2.71
1513 3483 6.103330 GTCTCTCTGAAGGTAGGAAATTGTC 58.897 44.000 0.00 0.00 0.00 3.18
1514 3484 5.780282 TCTCTCTGAAGGTAGGAAATTGTCA 59.220 40.000 0.00 0.00 0.00 3.58
1534 3504 3.684305 TCACTGTTCATCACGGCTAATTG 59.316 43.478 0.00 0.00 34.68 2.32
1549 3519 4.835056 GGCTAATTGGGGCATCTCTTAATT 59.165 41.667 0.00 0.00 0.00 1.40
1562 3532 7.487189 GGCATCTCTTAATTTTGTGAACATCAG 59.513 37.037 0.00 0.00 0.00 2.90
1596 3566 4.633769 AGCTGCTCTGCTTTAGCC 57.366 55.556 0.00 0.00 40.93 3.93
1623 3593 1.462616 CCGCCTCATTGAATGTTGGA 58.537 50.000 18.54 0.00 0.00 3.53
1644 3614 4.507756 GGATTTGCAGTTTCTGTTTGGTTC 59.492 41.667 0.00 0.00 33.43 3.62
1670 3640 6.269077 TCCTGTCTGAACTACCAAAACAGATA 59.731 38.462 0.00 0.00 39.27 1.98
1676 3646 8.375506 TCTGAACTACCAAAACAGATACTTGAT 58.624 33.333 0.00 0.00 33.57 2.57
1679 3649 8.691661 AACTACCAAAACAGATACTTGATGTT 57.308 30.769 0.00 0.00 38.76 2.71
1721 3697 6.285990 TCTGGGAGTGTTTGTTTTACTAGTC 58.714 40.000 0.00 0.00 0.00 2.59
1755 3731 4.104086 TCTGTGACCAGATTAACCATCCT 58.896 43.478 0.00 0.00 42.80 3.24
1871 4278 3.493699 CCCAAAACAGAGTAACAGACCGA 60.494 47.826 0.00 0.00 0.00 4.69
1892 4299 4.452455 CGACCATTATAAATCTGGGAGTGC 59.548 45.833 8.18 0.00 34.21 4.40
1956 4380 6.387465 GTTCTATTTTGCCCAGTTTTCCTAC 58.613 40.000 0.00 0.00 0.00 3.18
2052 4477 0.251354 AGACTGCGGCTGTTCATCAT 59.749 50.000 13.85 0.00 0.00 2.45
2062 4487 5.559035 GCGGCTGTTCATCATGACTAATTAC 60.559 44.000 0.00 0.00 0.00 1.89
2069 4494 6.161855 TCATCATGACTAATTACGGCTTCT 57.838 37.500 0.00 0.00 0.00 2.85
2102 4527 8.522542 TGTGAACATTGAATTATCATCATCCA 57.477 30.769 0.00 0.00 34.96 3.41
2108 4533 8.701895 ACATTGAATTATCATCATCCAAAAGCT 58.298 29.630 0.00 0.00 34.96 3.74
2114 4539 4.445452 TCATCATCCAAAAGCTGCTTTC 57.555 40.909 26.17 0.00 31.99 2.62
2138 4563 3.708451 TGGGCTTAGTACATCTCACTCA 58.292 45.455 0.00 0.00 0.00 3.41
2139 4564 3.701542 TGGGCTTAGTACATCTCACTCAG 59.298 47.826 0.00 0.00 0.00 3.35
2145 4570 3.696045 AGTACATCTCACTCAGAGCAGT 58.304 45.455 0.00 0.00 44.35 4.40
2175 4600 0.603975 GCCTGTCCCACTCACTGAAC 60.604 60.000 0.00 0.00 0.00 3.18
2184 4609 1.462283 CACTCACTGAACGGATTGCAG 59.538 52.381 0.00 0.00 35.81 4.41
2213 4638 7.944554 TCTGTTTGGTTTCCTTATCTGAATTCT 59.055 33.333 7.05 0.00 0.00 2.40
2217 4642 5.882557 TGGTTTCCTTATCTGAATTCTGAGC 59.117 40.000 18.38 5.28 0.00 4.26
2222 4647 4.880120 CCTTATCTGAATTCTGAGCTGCAA 59.120 41.667 18.38 7.97 0.00 4.08
2223 4648 5.531659 CCTTATCTGAATTCTGAGCTGCAAT 59.468 40.000 18.38 4.80 0.00 3.56
2224 4649 6.709397 CCTTATCTGAATTCTGAGCTGCAATA 59.291 38.462 18.38 3.96 0.00 1.90
2225 4650 7.307870 CCTTATCTGAATTCTGAGCTGCAATAC 60.308 40.741 18.38 0.00 0.00 1.89
2226 4651 4.194640 TCTGAATTCTGAGCTGCAATACC 58.805 43.478 10.68 0.00 0.00 2.73
2227 4652 3.943381 CTGAATTCTGAGCTGCAATACCA 59.057 43.478 7.05 0.00 0.00 3.25
2228 4653 4.334552 TGAATTCTGAGCTGCAATACCAA 58.665 39.130 7.05 0.00 0.00 3.67
2229 4654 4.766373 TGAATTCTGAGCTGCAATACCAAA 59.234 37.500 7.05 0.00 0.00 3.28
2230 4655 5.243507 TGAATTCTGAGCTGCAATACCAAAA 59.756 36.000 7.05 0.00 0.00 2.44
2231 4656 4.503741 TTCTGAGCTGCAATACCAAAAC 57.496 40.909 1.02 0.00 0.00 2.43
2232 4657 3.485394 TCTGAGCTGCAATACCAAAACA 58.515 40.909 1.02 0.00 0.00 2.83
2233 4658 3.503363 TCTGAGCTGCAATACCAAAACAG 59.497 43.478 1.02 0.00 0.00 3.16
2234 4659 3.485394 TGAGCTGCAATACCAAAACAGA 58.515 40.909 1.02 0.00 0.00 3.41
2235 4660 3.253188 TGAGCTGCAATACCAAAACAGAC 59.747 43.478 1.02 0.00 0.00 3.51
2236 4661 2.558359 AGCTGCAATACCAAAACAGACC 59.442 45.455 1.02 0.00 0.00 3.85
2237 4662 2.295909 GCTGCAATACCAAAACAGACCA 59.704 45.455 0.00 0.00 0.00 4.02
2238 4663 3.056607 GCTGCAATACCAAAACAGACCAT 60.057 43.478 0.00 0.00 0.00 3.55
2239 4664 4.737054 CTGCAATACCAAAACAGACCATC 58.263 43.478 0.00 0.00 0.00 3.51
2240 4665 4.406456 TGCAATACCAAAACAGACCATCT 58.594 39.130 0.00 0.00 0.00 2.90
2241 4666 4.832266 TGCAATACCAAAACAGACCATCTT 59.168 37.500 0.00 0.00 0.00 2.40
2242 4667 5.048083 TGCAATACCAAAACAGACCATCTTC 60.048 40.000 0.00 0.00 0.00 2.87
2243 4668 5.183904 GCAATACCAAAACAGACCATCTTCT 59.816 40.000 0.00 0.00 0.00 2.85
2245 4670 2.887152 ACCAAAACAGACCATCTTCTGC 59.113 45.455 0.00 0.00 46.09 4.26
2246 4671 3.152341 CCAAAACAGACCATCTTCTGCT 58.848 45.455 0.00 0.00 46.09 4.24
2247 4672 3.190118 CCAAAACAGACCATCTTCTGCTC 59.810 47.826 0.00 0.00 46.09 4.26
2248 4673 3.777106 AAACAGACCATCTTCTGCTCA 57.223 42.857 0.00 0.00 46.09 4.26
2249 4674 3.331478 AACAGACCATCTTCTGCTCAG 57.669 47.619 0.00 0.00 46.09 3.35
2250 4675 1.554160 ACAGACCATCTTCTGCTCAGG 59.446 52.381 0.00 0.00 46.09 3.86
2251 4676 1.829849 CAGACCATCTTCTGCTCAGGA 59.170 52.381 0.00 0.00 36.83 3.86
2252 4677 2.435069 CAGACCATCTTCTGCTCAGGAT 59.565 50.000 0.00 0.00 36.83 3.24
2253 4678 3.113824 AGACCATCTTCTGCTCAGGATT 58.886 45.455 0.00 0.00 0.00 3.01
2254 4679 3.134442 AGACCATCTTCTGCTCAGGATTC 59.866 47.826 0.00 0.00 0.00 2.52
2255 4680 2.172293 ACCATCTTCTGCTCAGGATTCC 59.828 50.000 0.00 0.00 0.00 3.01
2256 4681 2.172082 CCATCTTCTGCTCAGGATTCCA 59.828 50.000 5.29 0.00 0.00 3.53
2257 4682 3.468770 CATCTTCTGCTCAGGATTCCAG 58.531 50.000 5.29 0.00 0.00 3.86
2258 4683 2.825223 TCTTCTGCTCAGGATTCCAGA 58.175 47.619 5.29 1.07 32.90 3.86
2259 4684 3.176411 TCTTCTGCTCAGGATTCCAGAA 58.824 45.455 5.29 4.07 40.77 3.02
2260 4685 3.584406 TCTTCTGCTCAGGATTCCAGAAA 59.416 43.478 5.29 0.00 41.96 2.52
2261 4686 4.042062 TCTTCTGCTCAGGATTCCAGAAAA 59.958 41.667 5.29 0.00 41.96 2.29
2262 4687 3.679389 TCTGCTCAGGATTCCAGAAAAC 58.321 45.455 5.29 0.00 31.90 2.43
2263 4688 3.072915 TCTGCTCAGGATTCCAGAAAACA 59.927 43.478 5.29 0.90 31.90 2.83
2264 4689 3.822735 CTGCTCAGGATTCCAGAAAACAA 59.177 43.478 5.29 0.00 0.00 2.83
2265 4690 4.410099 TGCTCAGGATTCCAGAAAACAAT 58.590 39.130 5.29 0.00 0.00 2.71
2266 4691 4.460382 TGCTCAGGATTCCAGAAAACAATC 59.540 41.667 5.29 0.00 0.00 2.67
2267 4692 4.142293 GCTCAGGATTCCAGAAAACAATCC 60.142 45.833 5.29 2.23 44.19 3.01
2269 4694 3.782889 GGATTCCAGAAAACAATCCGG 57.217 47.619 0.00 0.00 37.04 5.14
2270 4695 2.427095 GGATTCCAGAAAACAATCCGGG 59.573 50.000 0.00 0.00 37.04 5.73
2271 4696 1.917872 TTCCAGAAAACAATCCGGGG 58.082 50.000 0.00 0.00 0.00 5.73
2272 4697 0.774908 TCCAGAAAACAATCCGGGGT 59.225 50.000 0.00 0.00 0.00 4.95
2273 4698 1.986631 TCCAGAAAACAATCCGGGGTA 59.013 47.619 0.00 0.00 0.00 3.69
2274 4699 2.089201 CCAGAAAACAATCCGGGGTAC 58.911 52.381 0.00 0.00 0.00 3.34
2275 4700 2.290705 CCAGAAAACAATCCGGGGTACT 60.291 50.000 0.00 0.00 0.00 2.73
2276 4701 2.747446 CAGAAAACAATCCGGGGTACTG 59.253 50.000 0.00 5.61 0.00 2.74
2277 4702 2.374170 AGAAAACAATCCGGGGTACTGT 59.626 45.455 0.00 0.00 0.00 3.55
2278 4703 2.194201 AAACAATCCGGGGTACTGTG 57.806 50.000 0.00 0.00 0.00 3.66
2279 4704 1.354101 AACAATCCGGGGTACTGTGA 58.646 50.000 0.00 0.00 0.00 3.58
2280 4705 0.902531 ACAATCCGGGGTACTGTGAG 59.097 55.000 0.00 0.00 0.00 3.51
2281 4706 0.902531 CAATCCGGGGTACTGTGAGT 59.097 55.000 0.00 0.00 0.00 3.41
2282 4707 1.278127 CAATCCGGGGTACTGTGAGTT 59.722 52.381 0.00 0.00 0.00 3.01
2283 4708 2.498481 CAATCCGGGGTACTGTGAGTTA 59.502 50.000 0.00 0.00 0.00 2.24
2284 4709 2.537633 TCCGGGGTACTGTGAGTTAT 57.462 50.000 0.00 0.00 0.00 1.89
2285 4710 2.104967 TCCGGGGTACTGTGAGTTATG 58.895 52.381 0.00 0.00 0.00 1.90
2286 4711 1.472728 CCGGGGTACTGTGAGTTATGC 60.473 57.143 0.00 0.00 0.00 3.14
2287 4712 1.472728 CGGGGTACTGTGAGTTATGCC 60.473 57.143 0.00 0.00 0.00 4.40
2288 4713 1.838077 GGGGTACTGTGAGTTATGCCT 59.162 52.381 0.00 0.00 0.00 4.75
2289 4714 2.420129 GGGGTACTGTGAGTTATGCCTG 60.420 54.545 0.00 0.00 0.00 4.85
2290 4715 2.280628 GGTACTGTGAGTTATGCCTGC 58.719 52.381 0.00 0.00 0.00 4.85
2291 4716 2.093447 GGTACTGTGAGTTATGCCTGCT 60.093 50.000 0.00 0.00 0.00 4.24
2292 4717 2.105006 ACTGTGAGTTATGCCTGCTG 57.895 50.000 0.00 0.00 0.00 4.41
2293 4718 1.339438 ACTGTGAGTTATGCCTGCTGG 60.339 52.381 5.03 5.03 0.00 4.85
2294 4719 0.692476 TGTGAGTTATGCCTGCTGGT 59.308 50.000 11.69 0.00 35.27 4.00
2295 4720 1.089920 GTGAGTTATGCCTGCTGGTG 58.910 55.000 11.69 0.00 35.27 4.17
2296 4721 0.035152 TGAGTTATGCCTGCTGGTGG 60.035 55.000 11.69 0.00 35.27 4.61
2297 4722 0.035056 GAGTTATGCCTGCTGGTGGT 60.035 55.000 11.69 0.57 35.27 4.16
2298 4723 1.209504 GAGTTATGCCTGCTGGTGGTA 59.790 52.381 11.69 0.00 35.27 3.25
2299 4724 1.210478 AGTTATGCCTGCTGGTGGTAG 59.790 52.381 11.69 0.00 35.27 3.18
2301 4726 1.344953 TATGCCTGCTGGTGGTAGGG 61.345 60.000 11.69 0.00 46.09 3.53
2302 4727 4.115199 GCCTGCTGGTGGTAGGGG 62.115 72.222 11.69 0.00 46.09 4.79
2303 4728 2.285368 CCTGCTGGTGGTAGGGGA 60.285 66.667 0.51 0.00 42.95 4.81
2304 4729 1.694169 CCTGCTGGTGGTAGGGGAT 60.694 63.158 0.51 0.00 42.95 3.85
2305 4730 1.281925 CCTGCTGGTGGTAGGGGATT 61.282 60.000 0.51 0.00 42.95 3.01
2306 4731 0.107017 CTGCTGGTGGTAGGGGATTG 60.107 60.000 0.00 0.00 0.00 2.67
2307 4732 1.453928 GCTGGTGGTAGGGGATTGC 60.454 63.158 0.00 0.00 0.00 3.56
2308 4733 1.227383 CTGGTGGTAGGGGATTGCC 59.773 63.158 0.00 0.00 0.00 4.52
2318 4743 4.655921 GGATTGCCCCGATGTTCA 57.344 55.556 0.00 0.00 0.00 3.18
2319 4744 3.116091 GGATTGCCCCGATGTTCAT 57.884 52.632 0.00 0.00 0.00 2.57
2320 4745 0.670162 GGATTGCCCCGATGTTCATG 59.330 55.000 0.00 0.00 0.00 3.07
2321 4746 0.670162 GATTGCCCCGATGTTCATGG 59.330 55.000 0.00 0.00 0.00 3.66
2322 4747 1.394266 ATTGCCCCGATGTTCATGGC 61.394 55.000 0.00 5.91 42.49 4.40
2323 4748 3.585990 GCCCCGATGTTCATGGCG 61.586 66.667 0.00 0.00 31.55 5.69
2324 4749 2.901840 CCCCGATGTTCATGGCGG 60.902 66.667 0.00 0.00 43.20 6.13
2325 4750 3.585990 CCCGATGTTCATGGCGGC 61.586 66.667 0.00 0.00 42.29 6.53
2326 4751 2.514592 CCGATGTTCATGGCGGCT 60.515 61.111 11.43 0.00 37.08 5.52
2327 4752 1.227527 CCGATGTTCATGGCGGCTA 60.228 57.895 11.43 0.00 37.08 3.93
2328 4753 0.813610 CCGATGTTCATGGCGGCTAA 60.814 55.000 11.43 0.00 37.08 3.09
2329 4754 1.229428 CGATGTTCATGGCGGCTAAT 58.771 50.000 11.43 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 5.208463 TGAGTTGCAGTGTAGAATGTGTA 57.792 39.130 0.00 0.00 0.00 2.90
144 146 5.182950 ACGCAACATGTTCCTATTCATTGAA 59.817 36.000 8.48 0.75 0.00 2.69
161 163 3.920446 TCAACTGCTTATAGACGCAACA 58.080 40.909 0.00 0.00 35.46 3.33
183 185 1.680989 TGATCCCGTTCCTCGAGCA 60.681 57.895 6.99 0.00 42.86 4.26
195 197 2.154462 CTATGGCCGAAATGTGATCCC 58.846 52.381 0.00 0.00 0.00 3.85
433 2309 8.210265 ACATTTCTTTGAAACCCACAAACATAT 58.790 29.630 0.00 0.00 34.30 1.78
440 2316 5.641209 CACAAACATTTCTTTGAAACCCACA 59.359 36.000 0.00 0.00 35.46 4.17
479 2355 9.760660 CCGTGAACATTTTTCAAAATAACAAAA 57.239 25.926 0.00 0.00 36.52 2.44
505 2381 7.526608 TCGAATCCACATACATTTTCTGAAAC 58.473 34.615 1.58 0.00 0.00 2.78
637 2513 8.568676 TCATCCAATTCAAAATTTGCAATCAT 57.431 26.923 0.00 0.00 0.00 2.45
692 2568 6.573664 TGTCCATCAGTTTTCATCGAATTT 57.426 33.333 0.00 0.00 0.00 1.82
829 2750 4.408821 CGGCCAGCCCAAGTAGCA 62.409 66.667 2.24 0.00 0.00 3.49
848 2769 1.792118 GACCAAACGAGCAACCACCC 61.792 60.000 0.00 0.00 0.00 4.61
849 2770 1.652563 GACCAAACGAGCAACCACC 59.347 57.895 0.00 0.00 0.00 4.61
850 2771 1.155424 TCGACCAAACGAGCAACCAC 61.155 55.000 0.00 0.00 37.37 4.16
851 2772 1.144276 TCGACCAAACGAGCAACCA 59.856 52.632 0.00 0.00 37.37 3.67
852 2773 1.155424 TGTCGACCAAACGAGCAACC 61.155 55.000 14.12 0.00 42.88 3.77
853 2774 0.232303 CTGTCGACCAAACGAGCAAC 59.768 55.000 14.12 0.00 42.88 4.17
854 2775 0.179094 ACTGTCGACCAAACGAGCAA 60.179 50.000 14.12 0.00 42.88 3.91
857 2778 2.056577 GGTAACTGTCGACCAAACGAG 58.943 52.381 14.12 4.87 42.88 4.18
863 2784 1.888512 GTAGGTGGTAACTGTCGACCA 59.111 52.381 14.12 9.75 43.55 4.02
865 2786 1.730446 GCGTAGGTGGTAACTGTCGAC 60.730 57.143 9.11 9.11 37.61 4.20
867 2788 0.795735 CGCGTAGGTGGTAACTGTCG 60.796 60.000 0.00 0.00 37.61 4.35
868 2789 0.457337 CCGCGTAGGTGGTAACTGTC 60.457 60.000 4.92 0.00 39.07 3.51
869 2790 1.588082 CCGCGTAGGTGGTAACTGT 59.412 57.895 4.92 0.00 39.07 3.55
870 2791 1.808390 GCCGCGTAGGTGGTAACTG 60.808 63.158 15.95 0.00 45.93 3.16
879 2800 1.081376 CTCCTATTCGCCGCGTAGG 60.081 63.158 18.82 18.82 44.97 3.18
882 2803 2.104331 CACTCCTATTCGCCGCGT 59.896 61.111 13.39 0.00 0.00 6.01
883 2804 2.658593 CCACTCCTATTCGCCGCG 60.659 66.667 6.39 6.39 0.00 6.46
884 2805 1.153429 AACCACTCCTATTCGCCGC 60.153 57.895 0.00 0.00 0.00 6.53
885 2806 0.108329 ACAACCACTCCTATTCGCCG 60.108 55.000 0.00 0.00 0.00 6.46
886 2807 1.066430 TCACAACCACTCCTATTCGCC 60.066 52.381 0.00 0.00 0.00 5.54
887 2808 2.000447 GTCACAACCACTCCTATTCGC 59.000 52.381 0.00 0.00 0.00 4.70
889 2810 3.260884 TCCAGTCACAACCACTCCTATTC 59.739 47.826 0.00 0.00 0.00 1.75
890 2811 3.248024 TCCAGTCACAACCACTCCTATT 58.752 45.455 0.00 0.00 0.00 1.73
891 2812 2.834549 CTCCAGTCACAACCACTCCTAT 59.165 50.000 0.00 0.00 0.00 2.57
892 2813 2.248248 CTCCAGTCACAACCACTCCTA 58.752 52.381 0.00 0.00 0.00 2.94
894 2815 0.035458 CCTCCAGTCACAACCACTCC 59.965 60.000 0.00 0.00 0.00 3.85
895 2816 0.759346 ACCTCCAGTCACAACCACTC 59.241 55.000 0.00 0.00 0.00 3.51
897 2818 0.535102 CCACCTCCAGTCACAACCAC 60.535 60.000 0.00 0.00 0.00 4.16
898 2819 1.705002 CCCACCTCCAGTCACAACCA 61.705 60.000 0.00 0.00 0.00 3.67
899 2820 1.073199 CCCACCTCCAGTCACAACC 59.927 63.158 0.00 0.00 0.00 3.77
900 2821 0.182775 AACCCACCTCCAGTCACAAC 59.817 55.000 0.00 0.00 0.00 3.32
901 2822 0.923358 AAACCCACCTCCAGTCACAA 59.077 50.000 0.00 0.00 0.00 3.33
902 2823 0.923358 AAAACCCACCTCCAGTCACA 59.077 50.000 0.00 0.00 0.00 3.58
903 2824 1.143073 AGAAAACCCACCTCCAGTCAC 59.857 52.381 0.00 0.00 0.00 3.67
904 2825 1.420138 GAGAAAACCCACCTCCAGTCA 59.580 52.381 0.00 0.00 0.00 3.41
905 2826 1.420138 TGAGAAAACCCACCTCCAGTC 59.580 52.381 0.00 0.00 0.00 3.51
910 2831 1.072331 TCTGCTGAGAAAACCCACCTC 59.928 52.381 0.00 0.00 0.00 3.85
971 2900 2.779755 TCTGTCTCTCGCTCTCTCTT 57.220 50.000 0.00 0.00 0.00 2.85
974 2903 1.681780 CCCTTCTGTCTCTCGCTCTCT 60.682 57.143 0.00 0.00 0.00 3.10
977 2906 1.140804 GCCCTTCTGTCTCTCGCTC 59.859 63.158 0.00 0.00 0.00 5.03
978 2907 2.705821 CGCCCTTCTGTCTCTCGCT 61.706 63.158 0.00 0.00 0.00 4.93
979 2908 2.202676 CGCCCTTCTGTCTCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
980 2909 1.137825 GTCGCCCTTCTGTCTCTCG 59.862 63.158 0.00 0.00 0.00 4.04
981 2910 1.251527 TGGTCGCCCTTCTGTCTCTC 61.252 60.000 0.00 0.00 0.00 3.20
982 2911 0.616111 ATGGTCGCCCTTCTGTCTCT 60.616 55.000 0.00 0.00 0.00 3.10
983 2912 0.460987 CATGGTCGCCCTTCTGTCTC 60.461 60.000 0.00 0.00 0.00 3.36
984 2913 1.599047 CATGGTCGCCCTTCTGTCT 59.401 57.895 0.00 0.00 0.00 3.41
985 2914 1.450312 CCATGGTCGCCCTTCTGTC 60.450 63.158 2.57 0.00 0.00 3.51
986 2915 2.671070 CCATGGTCGCCCTTCTGT 59.329 61.111 2.57 0.00 0.00 3.41
1027 2956 1.674221 CCAGAACCGCTTCTCCTTGAG 60.674 57.143 0.00 0.00 34.20 3.02
1109 3041 1.457455 GAGCAGAGAGGAGGGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1119 3051 4.831674 TGATTGATTTCTGGAGCAGAGA 57.168 40.909 0.00 0.00 41.75 3.10
1241 3182 3.373565 CCTTGTTGGGGGCTTCGC 61.374 66.667 0.00 0.00 0.00 4.70
1242 3183 1.971695 GACCTTGTTGGGGGCTTCG 60.972 63.158 0.00 0.00 41.11 3.79
1243 3184 1.152830 TGACCTTGTTGGGGGCTTC 59.847 57.895 0.00 0.00 41.11 3.86
1244 3185 1.152546 GTGACCTTGTTGGGGGCTT 60.153 57.895 0.00 0.00 41.11 4.35
1245 3186 2.520968 GTGACCTTGTTGGGGGCT 59.479 61.111 0.00 0.00 41.11 5.19
1246 3187 2.983592 CGTGACCTTGTTGGGGGC 60.984 66.667 0.00 0.00 41.11 5.80
1341 3296 5.831997 TCGTACTCATGTAACTCATCCATG 58.168 41.667 0.00 0.00 37.82 3.66
1346 3301 5.241949 GGGATCTCGTACTCATGTAACTCAT 59.758 44.000 0.00 0.00 37.22 2.90
1347 3302 4.579340 GGGATCTCGTACTCATGTAACTCA 59.421 45.833 0.00 0.00 0.00 3.41
1348 3303 4.822896 AGGGATCTCGTACTCATGTAACTC 59.177 45.833 0.00 0.00 0.00 3.01
1349 3304 4.794334 AGGGATCTCGTACTCATGTAACT 58.206 43.478 0.00 0.00 0.00 2.24
1350 3305 4.822896 AGAGGGATCTCGTACTCATGTAAC 59.177 45.833 0.00 0.00 44.47 2.50
1351 3306 5.050126 AGAGGGATCTCGTACTCATGTAA 57.950 43.478 0.00 0.00 44.47 2.41
1352 3307 4.708576 AGAGGGATCTCGTACTCATGTA 57.291 45.455 0.00 0.00 44.47 2.29
1353 3308 3.586470 AGAGGGATCTCGTACTCATGT 57.414 47.619 0.00 0.00 44.47 3.21
1354 3309 4.927978 AAAGAGGGATCTCGTACTCATG 57.072 45.455 0.00 0.00 44.47 3.07
1362 3317 4.036852 GGGCAAAATAAAAGAGGGATCTCG 59.963 45.833 0.00 0.00 44.47 4.04
1420 3390 5.227908 TGCACTGCAAGAACTAGTACTAAC 58.772 41.667 0.00 0.00 34.76 2.34
1477 3447 5.451242 CCTTCAGAGAGACAGCAGGTATTAC 60.451 48.000 0.00 0.00 0.00 1.89
1512 3482 3.610040 ATTAGCCGTGATGAACAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
1513 3483 3.181507 CCAATTAGCCGTGATGAACAGTG 60.182 47.826 0.00 0.00 0.00 3.66
1514 3484 3.009723 CCAATTAGCCGTGATGAACAGT 58.990 45.455 0.00 0.00 0.00 3.55
1534 3504 5.047377 TGTTCACAAAATTAAGAGATGCCCC 60.047 40.000 0.00 0.00 0.00 5.80
1562 3532 6.264067 AGAGCAGCTTTGGGATTATAACAATC 59.736 38.462 0.00 0.00 0.00 2.67
1566 3536 4.261363 GCAGAGCAGCTTTGGGATTATAAC 60.261 45.833 14.55 0.00 0.00 1.89
1568 3538 3.137176 AGCAGAGCAGCTTTGGGATTATA 59.863 43.478 14.55 0.00 43.70 0.98
1571 3541 0.039326 AGCAGAGCAGCTTTGGGATT 59.961 50.000 14.55 0.00 43.70 3.01
1596 3566 1.045350 TCAATGAGGCGGGAGAGGAG 61.045 60.000 0.00 0.00 0.00 3.69
1623 3593 5.343307 AGAACCAAACAGAAACTGCAAAT 57.657 34.783 0.00 0.00 34.37 2.32
1644 3614 4.703897 TGTTTTGGTAGTTCAGACAGGAG 58.296 43.478 0.00 0.00 0.00 3.69
1670 3640 7.915293 TCGTATGGAATTGTAAACATCAAGT 57.085 32.000 0.00 0.00 0.00 3.16
1676 3646 7.148154 CCCAGATTTCGTATGGAATTGTAAACA 60.148 37.037 0.00 0.00 41.95 2.83
1679 3649 6.654959 TCCCAGATTTCGTATGGAATTGTAA 58.345 36.000 0.00 0.00 41.95 2.41
1721 3697 2.263077 GGTCACAGATTGCTACTCGTG 58.737 52.381 0.00 0.00 0.00 4.35
1871 4278 5.653255 AGCACTCCCAGATTTATAATGGT 57.347 39.130 3.50 0.00 31.85 3.55
1892 4299 5.577164 CGGGTTCTTACACATCACTAGAAAG 59.423 44.000 0.00 0.00 0.00 2.62
2052 4477 5.243283 GGATAGGAGAAGCCGTAATTAGTCA 59.757 44.000 0.00 0.00 43.43 3.41
2062 4487 1.403814 TCACAGGATAGGAGAAGCCG 58.596 55.000 0.00 0.00 43.43 5.52
2069 4494 8.493607 TGATAATTCAATGTTCACAGGATAGGA 58.506 33.333 0.00 0.00 0.00 2.94
2102 4527 0.394192 GCCCAAGGAAAGCAGCTTTT 59.606 50.000 21.49 3.96 33.49 2.27
2108 4533 2.373836 TGTACTAAGCCCAAGGAAAGCA 59.626 45.455 0.00 0.00 0.00 3.91
2114 4539 3.452627 AGTGAGATGTACTAAGCCCAAGG 59.547 47.826 0.00 0.00 0.00 3.61
2156 4581 0.603975 GTTCAGTGAGTGGGACAGGC 60.604 60.000 0.00 0.00 41.80 4.85
2175 4600 2.034558 ACCAAACAGAAACTGCAATCCG 59.965 45.455 0.00 0.00 34.37 4.18
2184 4609 7.272037 TCAGATAAGGAAACCAAACAGAAAC 57.728 36.000 0.00 0.00 0.00 2.78
2213 4638 3.253188 GTCTGTTTTGGTATTGCAGCTCA 59.747 43.478 0.00 0.00 0.00 4.26
2217 4642 4.460382 AGATGGTCTGTTTTGGTATTGCAG 59.540 41.667 0.00 0.00 0.00 4.41
2222 4647 4.702131 GCAGAAGATGGTCTGTTTTGGTAT 59.298 41.667 4.28 0.00 45.75 2.73
2223 4648 4.072131 GCAGAAGATGGTCTGTTTTGGTA 58.928 43.478 4.28 0.00 45.75 3.25
2224 4649 2.887152 GCAGAAGATGGTCTGTTTTGGT 59.113 45.455 4.28 0.00 45.75 3.67
2225 4650 3.152341 AGCAGAAGATGGTCTGTTTTGG 58.848 45.455 4.28 0.00 45.75 3.28
2234 4659 2.172293 GGAATCCTGAGCAGAAGATGGT 59.828 50.000 0.00 0.00 44.02 3.55
2235 4660 2.172082 TGGAATCCTGAGCAGAAGATGG 59.828 50.000 0.00 0.00 0.00 3.51
2236 4661 3.134262 TCTGGAATCCTGAGCAGAAGATG 59.866 47.826 4.66 0.00 0.00 2.90
2237 4662 3.382278 TCTGGAATCCTGAGCAGAAGAT 58.618 45.455 4.66 0.00 0.00 2.40
2238 4663 2.825223 TCTGGAATCCTGAGCAGAAGA 58.175 47.619 4.66 0.00 0.00 2.87
2239 4664 3.623906 TTCTGGAATCCTGAGCAGAAG 57.376 47.619 8.84 0.00 33.24 2.85
2240 4665 4.074970 GTTTTCTGGAATCCTGAGCAGAA 58.925 43.478 8.84 2.25 33.24 3.02
2241 4666 3.072915 TGTTTTCTGGAATCCTGAGCAGA 59.927 43.478 8.84 0.00 33.24 4.26
2242 4667 3.415212 TGTTTTCTGGAATCCTGAGCAG 58.585 45.455 8.84 0.00 33.24 4.24
2243 4668 3.507162 TGTTTTCTGGAATCCTGAGCA 57.493 42.857 8.84 7.33 33.24 4.26
2244 4669 4.142293 GGATTGTTTTCTGGAATCCTGAGC 60.142 45.833 8.84 5.12 41.33 4.26
2245 4670 4.095483 CGGATTGTTTTCTGGAATCCTGAG 59.905 45.833 8.84 0.00 42.06 3.35
2246 4671 4.009675 CGGATTGTTTTCTGGAATCCTGA 58.990 43.478 4.66 4.66 42.06 3.86
2247 4672 3.129287 CCGGATTGTTTTCTGGAATCCTG 59.871 47.826 0.00 0.00 43.77 3.86
2248 4673 3.356290 CCGGATTGTTTTCTGGAATCCT 58.644 45.455 0.00 0.00 43.77 3.24
2249 4674 2.427095 CCCGGATTGTTTTCTGGAATCC 59.573 50.000 0.73 0.00 43.77 3.01
2250 4675 2.427095 CCCCGGATTGTTTTCTGGAATC 59.573 50.000 0.73 0.00 43.77 2.52
2251 4676 2.225267 ACCCCGGATTGTTTTCTGGAAT 60.225 45.455 0.73 0.00 43.77 3.01
2252 4677 1.146152 ACCCCGGATTGTTTTCTGGAA 59.854 47.619 0.73 0.00 43.77 3.53
2253 4678 0.774908 ACCCCGGATTGTTTTCTGGA 59.225 50.000 0.73 0.00 43.77 3.86
2254 4679 2.089201 GTACCCCGGATTGTTTTCTGG 58.911 52.381 0.73 0.00 41.19 3.86
2255 4680 2.747446 CAGTACCCCGGATTGTTTTCTG 59.253 50.000 0.73 3.91 0.00 3.02
2256 4681 2.374170 ACAGTACCCCGGATTGTTTTCT 59.626 45.455 0.73 0.00 0.00 2.52
2257 4682 2.486592 CACAGTACCCCGGATTGTTTTC 59.513 50.000 0.73 0.00 0.00 2.29
2258 4683 2.106857 TCACAGTACCCCGGATTGTTTT 59.893 45.455 0.73 0.00 0.00 2.43
2259 4684 1.700739 TCACAGTACCCCGGATTGTTT 59.299 47.619 0.73 0.00 0.00 2.83
2260 4685 1.278127 CTCACAGTACCCCGGATTGTT 59.722 52.381 0.73 0.00 0.00 2.83
2261 4686 0.902531 CTCACAGTACCCCGGATTGT 59.097 55.000 0.73 0.00 0.00 2.71
2262 4687 0.902531 ACTCACAGTACCCCGGATTG 59.097 55.000 0.73 0.00 0.00 2.67
2263 4688 1.652947 AACTCACAGTACCCCGGATT 58.347 50.000 0.73 0.00 0.00 3.01
2264 4689 2.537633 TAACTCACAGTACCCCGGAT 57.462 50.000 0.73 0.00 0.00 4.18
2265 4690 2.104967 CATAACTCACAGTACCCCGGA 58.895 52.381 0.73 0.00 0.00 5.14
2266 4691 1.472728 GCATAACTCACAGTACCCCGG 60.473 57.143 0.00 0.00 0.00 5.73
2267 4692 1.472728 GGCATAACTCACAGTACCCCG 60.473 57.143 0.00 0.00 0.00 5.73
2268 4693 1.838077 AGGCATAACTCACAGTACCCC 59.162 52.381 0.00 0.00 0.00 4.95
2269 4694 2.906354 CAGGCATAACTCACAGTACCC 58.094 52.381 0.00 0.00 0.00 3.69
2270 4695 2.093447 AGCAGGCATAACTCACAGTACC 60.093 50.000 0.00 0.00 0.00 3.34
2271 4696 2.932614 CAGCAGGCATAACTCACAGTAC 59.067 50.000 0.00 0.00 0.00 2.73
2272 4697 2.093500 CCAGCAGGCATAACTCACAGTA 60.093 50.000 0.00 0.00 0.00 2.74
2273 4698 1.339438 CCAGCAGGCATAACTCACAGT 60.339 52.381 0.00 0.00 0.00 3.55
2274 4699 1.339438 ACCAGCAGGCATAACTCACAG 60.339 52.381 0.00 0.00 39.06 3.66
2275 4700 0.692476 ACCAGCAGGCATAACTCACA 59.308 50.000 0.00 0.00 39.06 3.58
2276 4701 1.089920 CACCAGCAGGCATAACTCAC 58.910 55.000 0.00 0.00 39.06 3.51
2277 4702 0.035152 CCACCAGCAGGCATAACTCA 60.035 55.000 0.00 0.00 39.06 3.41
2278 4703 0.035056 ACCACCAGCAGGCATAACTC 60.035 55.000 0.00 0.00 39.06 3.01
2279 4704 1.210478 CTACCACCAGCAGGCATAACT 59.790 52.381 0.00 0.00 39.06 2.24
2280 4705 1.668419 CTACCACCAGCAGGCATAAC 58.332 55.000 0.00 0.00 39.06 1.89
2281 4706 0.546122 CCTACCACCAGCAGGCATAA 59.454 55.000 0.00 0.00 39.06 1.90
2282 4707 1.344953 CCCTACCACCAGCAGGCATA 61.345 60.000 0.00 0.00 39.06 3.14
2283 4708 2.683465 CCCTACCACCAGCAGGCAT 61.683 63.158 0.00 0.00 39.06 4.40
2284 4709 3.329889 CCCTACCACCAGCAGGCA 61.330 66.667 0.00 0.00 39.06 4.75
2285 4710 4.115199 CCCCTACCACCAGCAGGC 62.115 72.222 0.00 0.00 39.06 4.85
2286 4711 1.281925 AATCCCCTACCACCAGCAGG 61.282 60.000 0.00 0.00 42.21 4.85
2287 4712 0.107017 CAATCCCCTACCACCAGCAG 60.107 60.000 0.00 0.00 0.00 4.24
2288 4713 1.998530 CAATCCCCTACCACCAGCA 59.001 57.895 0.00 0.00 0.00 4.41
2289 4714 1.453928 GCAATCCCCTACCACCAGC 60.454 63.158 0.00 0.00 0.00 4.85
2290 4715 1.227383 GGCAATCCCCTACCACCAG 59.773 63.158 0.00 0.00 0.00 4.00
2291 4716 3.422204 GGCAATCCCCTACCACCA 58.578 61.111 0.00 0.00 0.00 4.17
2301 4726 0.670162 CATGAACATCGGGGCAATCC 59.330 55.000 0.00 0.00 0.00 3.01
2302 4727 0.670162 CCATGAACATCGGGGCAATC 59.330 55.000 0.00 0.00 0.00 2.67
2303 4728 1.394266 GCCATGAACATCGGGGCAAT 61.394 55.000 0.00 0.00 44.01 3.56
2304 4729 2.051518 GCCATGAACATCGGGGCAA 61.052 57.895 0.00 0.00 44.01 4.52
2305 4730 2.440065 GCCATGAACATCGGGGCA 60.440 61.111 0.00 0.00 44.01 5.36
2306 4731 3.585990 CGCCATGAACATCGGGGC 61.586 66.667 0.00 0.00 41.20 5.80
2307 4732 2.901840 CCGCCATGAACATCGGGG 60.902 66.667 0.00 4.58 38.35 5.73
2308 4733 2.658679 TAGCCGCCATGAACATCGGG 62.659 60.000 13.83 3.99 41.96 5.14
2309 4734 0.813610 TTAGCCGCCATGAACATCGG 60.814 55.000 9.53 9.53 44.29 4.18
2310 4735 1.229428 ATTAGCCGCCATGAACATCG 58.771 50.000 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.