Multiple sequence alignment - TraesCS3B01G610600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G610600 chr3B 100.000 4479 0 0 431 4909 829036874 829041352 0.000000e+00 8272.0
1 TraesCS3B01G610600 chr3B 75.302 2154 351 123 1700 3768 828993940 828991883 0.000000e+00 863.0
2 TraesCS3B01G610600 chr3B 77.689 1246 222 41 2337 3562 828950508 828949299 0.000000e+00 710.0
3 TraesCS3B01G610600 chr3B 79.004 743 125 23 2847 3566 829014129 829013395 3.440000e-131 479.0
4 TraesCS3B01G610600 chr3B 100.000 238 0 0 1 238 829036444 829036681 1.620000e-119 440.0
5 TraesCS3B01G610600 chr3B 75.087 859 161 38 2717 3562 829007785 829006967 7.820000e-93 351.0
6 TraesCS3B01G610600 chr3B 76.522 460 72 18 2336 2789 828919016 828918587 8.270000e-53 219.0
7 TraesCS3B01G610600 chr3B 79.567 323 42 14 2332 2650 829008103 829007801 4.980000e-50 209.0
8 TraesCS3B01G610600 chr3D 89.163 3488 276 54 1489 4909 611295969 611299421 0.000000e+00 4253.0
9 TraesCS3B01G610600 chr3D 86.559 1049 73 26 433 1472 611294899 611295888 0.000000e+00 1094.0
10 TraesCS3B01G610600 chr3D 75.455 2143 355 115 1700 3768 611212291 611210246 0.000000e+00 885.0
11 TraesCS3B01G610600 chr3D 75.814 1658 288 76 1932 3562 611218098 611216527 0.000000e+00 736.0
12 TraesCS3B01G610600 chr3D 77.578 1280 226 47 2337 3594 611198210 611196970 0.000000e+00 717.0
13 TraesCS3B01G610600 chr3D 77.024 914 154 40 2885 3768 611252695 611251808 1.600000e-129 473.0
14 TraesCS3B01G610600 chr3D 75.524 907 172 38 2890 3768 611164038 611163154 2.750000e-107 399.0
15 TraesCS3B01G610600 chr3D 76.731 520 86 19 1731 2242 611253677 611253185 1.750000e-64 257.0
16 TraesCS3B01G610600 chr3D 77.582 397 59 16 2336 2730 611164461 611164093 3.850000e-51 213.0
17 TraesCS3B01G610600 chr3D 79.327 208 32 6 1665 1871 611218397 611218200 8.570000e-28 135.0
18 TraesCS3B01G610600 chr3A 88.314 3269 268 42 1665 4866 746186878 746190099 0.000000e+00 3816.0
19 TraesCS3B01G610600 chr3A 88.724 807 43 9 680 1472 746185645 746186417 0.000000e+00 942.0
20 TraesCS3B01G610600 chr3A 75.300 1915 332 96 1908 3768 746089159 746087332 0.000000e+00 785.0
21 TraesCS3B01G610600 chr3A 76.414 1467 250 67 2337 3777 746146390 746144994 0.000000e+00 704.0
22 TraesCS3B01G610600 chr3A 74.420 1251 230 53 2547 3768 746175831 746174642 5.790000e-124 455.0
23 TraesCS3B01G610600 chr3A 92.593 189 11 2 1489 1674 746186498 746186686 8.100000e-68 268.0
24 TraesCS3B01G610600 chr4D 75.831 451 82 16 4061 4488 62829291 62828845 2.320000e-48 204.0
25 TraesCS3B01G610600 chr4D 77.500 120 24 2 4126 4245 258881145 258881029 8.820000e-08 69.4
26 TraesCS3B01G610600 chrUn 77.333 300 53 14 4088 4380 2426490 2426199 3.930000e-36 163.0
27 TraesCS3B01G610600 chrUn 86.957 69 9 0 3724 3792 50913310 50913242 1.470000e-10 78.7
28 TraesCS3B01G610600 chr7A 82.659 173 25 4 2342 2512 642743858 642743689 1.100000e-31 148.0
29 TraesCS3B01G610600 chr7B 79.245 212 36 8 4114 4322 603299159 603298953 1.840000e-29 141.0
30 TraesCS3B01G610600 chr7B 88.764 89 9 1 4401 4488 528704627 528704539 1.870000e-19 108.0
31 TraesCS3B01G610600 chr7B 87.640 89 10 1 4401 4488 528683957 528683869 8.690000e-18 102.0
32 TraesCS3B01G610600 chr5A 91.011 89 7 1 4401 4488 544060755 544060667 8.630000e-23 119.0
33 TraesCS3B01G610600 chr5D 86.813 91 10 2 4401 4489 398100570 398100480 3.130000e-17 100.0
34 TraesCS3B01G610600 chr4A 88.235 85 8 2 4401 4483 132438610 132438694 3.130000e-17 100.0
35 TraesCS3B01G610600 chr2D 88.889 81 8 1 4405 4484 265515506 265515426 1.120000e-16 99.0
36 TraesCS3B01G610600 chr1D 85.556 90 11 2 4401 4488 155290165 155290076 5.230000e-15 93.5
37 TraesCS3B01G610600 chr7D 87.500 64 8 0 3729 3792 18383918 18383855 1.900000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G610600 chr3B 829036444 829041352 4908 False 4356.000000 8272 100.0000 1 4909 2 chr3B.!!$F1 4908
1 TraesCS3B01G610600 chr3B 828991883 828993940 2057 True 863.000000 863 75.3020 1700 3768 1 chr3B.!!$R3 2068
2 TraesCS3B01G610600 chr3B 828949299 828950508 1209 True 710.000000 710 77.6890 2337 3562 1 chr3B.!!$R2 1225
3 TraesCS3B01G610600 chr3B 829013395 829014129 734 True 479.000000 479 79.0040 2847 3566 1 chr3B.!!$R4 719
4 TraesCS3B01G610600 chr3B 829006967 829008103 1136 True 280.000000 351 77.3270 2332 3562 2 chr3B.!!$R5 1230
5 TraesCS3B01G610600 chr3D 611294899 611299421 4522 False 2673.500000 4253 87.8610 433 4909 2 chr3D.!!$F1 4476
6 TraesCS3B01G610600 chr3D 611210246 611212291 2045 True 885.000000 885 75.4550 1700 3768 1 chr3D.!!$R2 2068
7 TraesCS3B01G610600 chr3D 611196970 611198210 1240 True 717.000000 717 77.5780 2337 3594 1 chr3D.!!$R1 1257
8 TraesCS3B01G610600 chr3D 611216527 611218397 1870 True 435.500000 736 77.5705 1665 3562 2 chr3D.!!$R4 1897
9 TraesCS3B01G610600 chr3D 611251808 611253677 1869 True 365.000000 473 76.8775 1731 3768 2 chr3D.!!$R5 2037
10 TraesCS3B01G610600 chr3D 611163154 611164461 1307 True 306.000000 399 76.5530 2336 3768 2 chr3D.!!$R3 1432
11 TraesCS3B01G610600 chr3A 746185645 746190099 4454 False 1675.333333 3816 89.8770 680 4866 3 chr3A.!!$F1 4186
12 TraesCS3B01G610600 chr3A 746087332 746089159 1827 True 785.000000 785 75.3000 1908 3768 1 chr3A.!!$R1 1860
13 TraesCS3B01G610600 chr3A 746144994 746146390 1396 True 704.000000 704 76.4140 2337 3777 1 chr3A.!!$R2 1440
14 TraesCS3B01G610600 chr3A 746174642 746175831 1189 True 455.000000 455 74.4200 2547 3768 1 chr3A.!!$R3 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.036294 ACTAGAGAAAGTTGCCCCGC 60.036 55.0 0.00 0.00 0.00 6.13 F
842 847 0.240145 GCAAAACCGCAGAAGGTACC 59.760 55.0 2.73 2.73 45.21 3.34 F
997 1004 0.324943 ACCTCGCTGCCTACAACAAT 59.675 50.0 0.00 0.00 0.00 2.71 F
1784 2070 0.390603 TCCAACCGCAGAATGTACGG 60.391 55.0 0.00 0.00 45.48 4.02 F
3475 3994 0.107654 GGAGGACTGGGGATTGTTCG 60.108 60.0 0.00 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1420 0.034574 CATGGATCAACGGGTGGGAA 60.035 55.000 0.00 0.0 0.00 3.97 R
2348 2771 1.284785 TGTAAGGAGGGCCTGAAATGG 59.715 52.381 12.95 0.0 46.28 3.16 R
2637 3084 1.470098 CATGTCCAACAGCTAACCTGC 59.530 52.381 0.00 0.0 45.78 4.85 R
3525 4044 0.105778 GCCTCGGGGAGATTTCTGAG 59.894 60.000 4.80 0.0 33.58 3.35 R
4866 5442 0.187117 TGGATGAACCCAACCAAGCA 59.813 50.000 0.00 0.0 41.50 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.506108 CGAAGATGCCAAGCCAGG 58.494 61.111 0.00 0.00 0.00 4.45
18 19 2.117156 CGAAGATGCCAAGCCAGGG 61.117 63.158 0.00 0.00 0.00 4.45
19 20 1.304282 GAAGATGCCAAGCCAGGGA 59.696 57.895 0.00 0.00 0.00 4.20
20 21 0.323725 GAAGATGCCAAGCCAGGGAA 60.324 55.000 0.00 0.00 30.71 3.97
21 22 0.613012 AAGATGCCAAGCCAGGGAAC 60.613 55.000 0.00 0.00 30.71 3.62
40 41 3.819188 GCTCAGCAGCATACCACC 58.181 61.111 0.00 0.00 46.06 4.61
41 42 1.078214 GCTCAGCAGCATACCACCA 60.078 57.895 0.00 0.00 46.06 4.17
42 43 0.465097 GCTCAGCAGCATACCACCAT 60.465 55.000 0.00 0.00 46.06 3.55
43 44 1.306148 CTCAGCAGCATACCACCATG 58.694 55.000 0.00 0.00 0.00 3.66
44 45 0.107066 TCAGCAGCATACCACCATGG 60.107 55.000 11.19 11.19 45.02 3.66
54 55 3.196040 CCACCATGGTTGGATCTGG 57.804 57.895 16.84 7.88 46.92 3.86
55 56 0.625316 CCACCATGGTTGGATCTGGA 59.375 55.000 16.84 0.00 46.92 3.86
56 57 1.409241 CCACCATGGTTGGATCTGGAG 60.409 57.143 16.84 0.00 46.92 3.86
57 58 1.283029 CACCATGGTTGGATCTGGAGT 59.717 52.381 16.84 0.00 46.92 3.85
58 59 1.561542 ACCATGGTTGGATCTGGAGTC 59.438 52.381 13.00 0.00 46.92 3.36
59 60 1.473965 CCATGGTTGGATCTGGAGTCG 60.474 57.143 2.57 0.00 46.92 4.18
60 61 0.833287 ATGGTTGGATCTGGAGTCGG 59.167 55.000 0.00 0.00 0.00 4.79
61 62 0.252057 TGGTTGGATCTGGAGTCGGA 60.252 55.000 0.00 0.00 0.00 4.55
62 63 0.461961 GGTTGGATCTGGAGTCGGAG 59.538 60.000 0.00 0.00 0.00 4.63
63 64 1.187087 GTTGGATCTGGAGTCGGAGT 58.813 55.000 0.00 0.00 0.00 3.85
64 65 1.550976 GTTGGATCTGGAGTCGGAGTT 59.449 52.381 0.00 0.00 0.00 3.01
65 66 1.186200 TGGATCTGGAGTCGGAGTTG 58.814 55.000 0.00 0.00 0.00 3.16
66 67 0.179097 GGATCTGGAGTCGGAGTTGC 60.179 60.000 0.00 0.00 0.00 4.17
67 68 0.526524 GATCTGGAGTCGGAGTTGCG 60.527 60.000 0.00 0.00 0.00 4.85
68 69 0.965866 ATCTGGAGTCGGAGTTGCGA 60.966 55.000 0.00 0.00 0.00 5.10
69 70 1.153939 CTGGAGTCGGAGTTGCGAG 60.154 63.158 0.00 0.00 0.00 5.03
70 71 1.587043 CTGGAGTCGGAGTTGCGAGA 61.587 60.000 0.00 0.00 0.00 4.04
71 72 0.965866 TGGAGTCGGAGTTGCGAGAT 60.966 55.000 0.00 0.00 0.00 2.75
72 73 0.248702 GGAGTCGGAGTTGCGAGATC 60.249 60.000 0.00 0.00 0.00 2.75
73 74 0.248702 GAGTCGGAGTTGCGAGATCC 60.249 60.000 0.00 0.00 0.00 3.36
74 75 0.965866 AGTCGGAGTTGCGAGATCCA 60.966 55.000 0.00 0.00 32.31 3.41
75 76 0.802607 GTCGGAGTTGCGAGATCCAC 60.803 60.000 0.00 0.90 32.31 4.02
76 77 1.519455 CGGAGTTGCGAGATCCACC 60.519 63.158 6.06 0.00 32.31 4.61
77 78 1.519455 GGAGTTGCGAGATCCACCG 60.519 63.158 0.89 0.00 33.08 4.94
78 79 1.519455 GAGTTGCGAGATCCACCGG 60.519 63.158 0.00 0.00 0.00 5.28
79 80 2.227089 GAGTTGCGAGATCCACCGGT 62.227 60.000 0.00 0.00 0.00 5.28
80 81 2.100631 GTTGCGAGATCCACCGGTG 61.101 63.158 28.26 28.26 0.00 4.94
81 82 2.279810 TTGCGAGATCCACCGGTGA 61.280 57.895 36.07 21.38 0.00 4.02
82 83 2.105128 GCGAGATCCACCGGTGAG 59.895 66.667 36.07 24.31 0.00 3.51
84 85 1.753078 CGAGATCCACCGGTGAGGA 60.753 63.158 36.07 25.49 45.00 3.71
85 86 1.729470 CGAGATCCACCGGTGAGGAG 61.729 65.000 36.07 18.88 45.00 3.69
86 87 2.022240 GAGATCCACCGGTGAGGAGC 62.022 65.000 36.07 26.81 45.00 4.70
87 88 2.039624 ATCCACCGGTGAGGAGCT 59.960 61.111 36.07 8.74 45.00 4.09
88 89 2.303549 GATCCACCGGTGAGGAGCTG 62.304 65.000 36.07 16.95 45.00 4.24
89 90 4.087892 CCACCGGTGAGGAGCTGG 62.088 72.222 36.07 12.94 45.00 4.85
90 91 2.997315 CACCGGTGAGGAGCTGGA 60.997 66.667 31.31 0.00 45.00 3.86
91 92 2.997897 ACCGGTGAGGAGCTGGAC 60.998 66.667 6.12 0.00 45.00 4.02
92 93 2.997315 CCGGTGAGGAGCTGGACA 60.997 66.667 0.00 0.00 45.00 4.02
93 94 2.575993 CGGTGAGGAGCTGGACAG 59.424 66.667 0.00 0.00 0.00 3.51
103 104 3.797331 CTGGACAGCTGACAGGGA 58.203 61.111 23.35 0.00 0.00 4.20
104 105 1.595882 CTGGACAGCTGACAGGGAG 59.404 63.158 23.35 5.12 0.00 4.30
105 106 2.267324 GGACAGCTGACAGGGAGC 59.733 66.667 23.35 0.00 36.65 4.70
106 107 2.587247 GGACAGCTGACAGGGAGCA 61.587 63.158 23.35 0.00 39.05 4.26
107 108 1.079266 GACAGCTGACAGGGAGCAG 60.079 63.158 23.35 0.00 39.05 4.24
108 109 1.534959 ACAGCTGACAGGGAGCAGA 60.535 57.895 23.35 0.00 39.05 4.26
109 110 0.908656 ACAGCTGACAGGGAGCAGAT 60.909 55.000 23.35 0.00 39.05 2.90
110 111 0.462225 CAGCTGACAGGGAGCAGATG 60.462 60.000 8.42 0.00 41.36 2.90
111 112 0.616964 AGCTGACAGGGAGCAGATGA 60.617 55.000 4.26 0.00 39.05 2.92
112 113 0.461693 GCTGACAGGGAGCAGATGAC 60.462 60.000 4.26 0.00 36.40 3.06
113 114 0.179116 CTGACAGGGAGCAGATGACG 60.179 60.000 0.00 0.00 34.06 4.35
114 115 0.900182 TGACAGGGAGCAGATGACGT 60.900 55.000 0.00 0.00 0.00 4.34
115 116 0.459237 GACAGGGAGCAGATGACGTG 60.459 60.000 0.00 0.00 0.00 4.49
116 117 1.153489 CAGGGAGCAGATGACGTGG 60.153 63.158 0.00 0.00 0.00 4.94
117 118 2.187946 GGGAGCAGATGACGTGGG 59.812 66.667 0.00 0.00 0.00 4.61
118 119 2.512515 GGAGCAGATGACGTGGGC 60.513 66.667 0.00 0.00 0.00 5.36
119 120 2.887568 GAGCAGATGACGTGGGCG 60.888 66.667 0.00 0.00 44.93 6.13
120 121 4.457496 AGCAGATGACGTGGGCGG 62.457 66.667 0.00 0.00 43.45 6.13
122 123 3.770040 CAGATGACGTGGGCGGGA 61.770 66.667 0.00 0.00 43.45 5.14
123 124 3.461773 AGATGACGTGGGCGGGAG 61.462 66.667 0.00 0.00 43.45 4.30
124 125 3.458163 GATGACGTGGGCGGGAGA 61.458 66.667 0.00 0.00 43.45 3.71
125 126 3.432051 GATGACGTGGGCGGGAGAG 62.432 68.421 0.00 0.00 43.45 3.20
126 127 3.957435 ATGACGTGGGCGGGAGAGA 62.957 63.158 0.00 0.00 43.45 3.10
127 128 3.827898 GACGTGGGCGGGAGAGAG 61.828 72.222 0.00 0.00 43.45 3.20
128 129 4.361971 ACGTGGGCGGGAGAGAGA 62.362 66.667 0.00 0.00 43.45 3.10
129 130 3.068691 CGTGGGCGGGAGAGAGAA 61.069 66.667 0.00 0.00 0.00 2.87
130 131 2.646175 CGTGGGCGGGAGAGAGAAA 61.646 63.158 0.00 0.00 0.00 2.52
131 132 1.677552 GTGGGCGGGAGAGAGAAAA 59.322 57.895 0.00 0.00 0.00 2.29
132 133 0.036306 GTGGGCGGGAGAGAGAAAAA 59.964 55.000 0.00 0.00 0.00 1.94
152 153 5.515797 AAAAACACTAGAGAAAGTTGCCC 57.484 39.130 0.00 0.00 0.00 5.36
153 154 2.861147 ACACTAGAGAAAGTTGCCCC 57.139 50.000 0.00 0.00 0.00 5.80
154 155 1.002087 ACACTAGAGAAAGTTGCCCCG 59.998 52.381 0.00 0.00 0.00 5.73
155 156 0.036294 ACTAGAGAAAGTTGCCCCGC 60.036 55.000 0.00 0.00 0.00 6.13
156 157 0.744771 CTAGAGAAAGTTGCCCCGCC 60.745 60.000 0.00 0.00 0.00 6.13
157 158 2.515996 TAGAGAAAGTTGCCCCGCCG 62.516 60.000 0.00 0.00 0.00 6.46
175 176 4.240103 CCGCCATCTGCCATCGGA 62.240 66.667 0.00 0.00 42.43 4.55
176 177 2.969238 CGCCATCTGCCATCGGAC 60.969 66.667 0.00 0.00 36.24 4.79
177 178 2.969238 GCCATCTGCCATCGGACG 60.969 66.667 0.00 0.00 0.00 4.79
178 179 2.280389 CCATCTGCCATCGGACGG 60.280 66.667 0.00 0.00 0.00 4.79
179 180 2.796193 CCATCTGCCATCGGACGGA 61.796 63.158 0.00 0.00 32.83 4.69
180 181 1.592669 CATCTGCCATCGGACGGAC 60.593 63.158 0.00 0.00 0.00 4.79
181 182 1.758514 ATCTGCCATCGGACGGACT 60.759 57.895 0.00 0.00 0.00 3.85
182 183 2.021068 ATCTGCCATCGGACGGACTG 62.021 60.000 0.00 0.00 0.00 3.51
183 184 4.451150 TGCCATCGGACGGACTGC 62.451 66.667 0.00 0.26 0.00 4.40
184 185 4.148825 GCCATCGGACGGACTGCT 62.149 66.667 0.00 0.00 0.00 4.24
185 186 2.105128 CCATCGGACGGACTGCTC 59.895 66.667 0.00 0.00 0.00 4.26
186 187 2.418910 CCATCGGACGGACTGCTCT 61.419 63.158 0.00 0.00 0.00 4.09
187 188 1.226802 CATCGGACGGACTGCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
188 189 2.418910 ATCGGACGGACTGCTCTGG 61.419 63.158 0.00 0.00 0.00 3.86
189 190 3.374402 CGGACGGACTGCTCTGGT 61.374 66.667 0.00 0.00 0.00 4.00
190 191 2.262915 GGACGGACTGCTCTGGTG 59.737 66.667 0.00 0.00 0.00 4.17
191 192 2.262915 GACGGACTGCTCTGGTGG 59.737 66.667 0.00 0.00 0.00 4.61
192 193 3.941657 GACGGACTGCTCTGGTGGC 62.942 68.421 0.00 0.00 0.00 5.01
194 195 3.695606 GGACTGCTCTGGTGGCGA 61.696 66.667 0.00 0.00 0.00 5.54
195 196 2.433318 GACTGCTCTGGTGGCGAC 60.433 66.667 0.00 0.00 0.00 5.19
196 197 4.363990 ACTGCTCTGGTGGCGACG 62.364 66.667 0.00 0.00 0.00 5.12
197 198 4.056125 CTGCTCTGGTGGCGACGA 62.056 66.667 0.00 0.00 0.00 4.20
198 199 3.978723 CTGCTCTGGTGGCGACGAG 62.979 68.421 4.47 4.47 0.00 4.18
199 200 4.803426 GCTCTGGTGGCGACGAGG 62.803 72.222 10.79 3.53 0.00 4.63
200 201 3.374402 CTCTGGTGGCGACGAGGT 61.374 66.667 10.79 0.00 0.00 3.85
201 202 2.034532 TCTGGTGGCGACGAGGTA 59.965 61.111 10.79 0.00 0.00 3.08
202 203 1.994507 CTCTGGTGGCGACGAGGTAG 61.995 65.000 10.79 0.00 0.00 3.18
203 204 2.282674 TGGTGGCGACGAGGTAGT 60.283 61.111 0.00 0.00 0.00 2.73
204 205 2.267681 CTGGTGGCGACGAGGTAGTC 62.268 65.000 0.00 0.00 37.76 2.59
212 213 3.510846 CGAGGTAGTCGTGGAGGG 58.489 66.667 0.00 0.00 44.20 4.30
213 214 2.119655 CGAGGTAGTCGTGGAGGGG 61.120 68.421 0.00 0.00 44.20 4.79
214 215 2.363925 AGGTAGTCGTGGAGGGGC 60.364 66.667 0.00 0.00 0.00 5.80
215 216 2.363925 GGTAGTCGTGGAGGGGCT 60.364 66.667 0.00 0.00 0.00 5.19
216 217 2.722201 GGTAGTCGTGGAGGGGCTG 61.722 68.421 0.00 0.00 0.00 4.85
217 218 1.982938 GTAGTCGTGGAGGGGCTGT 60.983 63.158 0.00 0.00 0.00 4.40
218 219 1.229082 TAGTCGTGGAGGGGCTGTT 60.229 57.895 0.00 0.00 0.00 3.16
219 220 0.834687 TAGTCGTGGAGGGGCTGTTT 60.835 55.000 0.00 0.00 0.00 2.83
220 221 1.228154 GTCGTGGAGGGGCTGTTTT 60.228 57.895 0.00 0.00 0.00 2.43
221 222 1.072505 TCGTGGAGGGGCTGTTTTC 59.927 57.895 0.00 0.00 0.00 2.29
222 223 2.325082 CGTGGAGGGGCTGTTTTCG 61.325 63.158 0.00 0.00 0.00 3.46
223 224 1.971695 GTGGAGGGGCTGTTTTCGG 60.972 63.158 0.00 0.00 0.00 4.30
224 225 2.434774 GGAGGGGCTGTTTTCGGT 59.565 61.111 0.00 0.00 0.00 4.69
225 226 1.971695 GGAGGGGCTGTTTTCGGTG 60.972 63.158 0.00 0.00 0.00 4.94
226 227 1.072505 GAGGGGCTGTTTTCGGTGA 59.927 57.895 0.00 0.00 0.00 4.02
227 228 0.322546 GAGGGGCTGTTTTCGGTGAT 60.323 55.000 0.00 0.00 0.00 3.06
228 229 0.609131 AGGGGCTGTTTTCGGTGATG 60.609 55.000 0.00 0.00 0.00 3.07
229 230 1.595093 GGGGCTGTTTTCGGTGATGG 61.595 60.000 0.00 0.00 0.00 3.51
230 231 1.212751 GGCTGTTTTCGGTGATGGC 59.787 57.895 0.00 0.00 0.00 4.40
231 232 1.154225 GCTGTTTTCGGTGATGGCG 60.154 57.895 0.00 0.00 0.00 5.69
232 233 1.852067 GCTGTTTTCGGTGATGGCGT 61.852 55.000 0.00 0.00 0.00 5.68
233 234 0.591170 CTGTTTTCGGTGATGGCGTT 59.409 50.000 0.00 0.00 0.00 4.84
234 235 0.309302 TGTTTTCGGTGATGGCGTTG 59.691 50.000 0.00 0.00 0.00 4.10
235 236 0.386731 GTTTTCGGTGATGGCGTTGG 60.387 55.000 0.00 0.00 0.00 3.77
236 237 0.820074 TTTTCGGTGATGGCGTTGGT 60.820 50.000 0.00 0.00 0.00 3.67
237 238 1.511318 TTTCGGTGATGGCGTTGGTG 61.511 55.000 0.00 0.00 0.00 4.17
457 458 4.827284 CCTCTGTTAGTTTGTTGGTTGGAT 59.173 41.667 0.00 0.00 0.00 3.41
463 464 6.603997 TGTTAGTTTGTTGGTTGGATAGTGTT 59.396 34.615 0.00 0.00 0.00 3.32
464 465 5.514274 AGTTTGTTGGTTGGATAGTGTTG 57.486 39.130 0.00 0.00 0.00 3.33
465 466 4.953579 AGTTTGTTGGTTGGATAGTGTTGT 59.046 37.500 0.00 0.00 0.00 3.32
466 467 5.067283 AGTTTGTTGGTTGGATAGTGTTGTC 59.933 40.000 0.00 0.00 0.00 3.18
467 468 4.431416 TGTTGGTTGGATAGTGTTGTCT 57.569 40.909 0.00 0.00 0.00 3.41
468 469 4.787551 TGTTGGTTGGATAGTGTTGTCTT 58.212 39.130 0.00 0.00 0.00 3.01
469 470 5.931294 TGTTGGTTGGATAGTGTTGTCTTA 58.069 37.500 0.00 0.00 0.00 2.10
470 471 6.358178 TGTTGGTTGGATAGTGTTGTCTTAA 58.642 36.000 0.00 0.00 0.00 1.85
475 476 7.012894 TGGTTGGATAGTGTTGTCTTAAAGTTG 59.987 37.037 0.00 0.00 0.00 3.16
518 519 5.948758 AGAAATTTCCCAGAATGAAGAGGTC 59.051 40.000 14.61 0.00 39.69 3.85
528 529 9.061435 CCCAGAATGAAGAGGTCTTATTTTATC 57.939 37.037 0.00 0.00 39.69 1.75
623 624 7.814107 GCATTGTAAGTTGAGAATGGAAAATGA 59.186 33.333 0.00 0.00 32.20 2.57
629 630 5.478332 AGTTGAGAATGGAAAATGAGGGAAC 59.522 40.000 0.00 0.00 0.00 3.62
646 647 0.744281 AACAGCCCAAAAGACGTTGG 59.256 50.000 0.00 0.00 46.57 3.77
651 652 1.883926 GCCCAAAAGACGTTGGTATGT 59.116 47.619 3.43 0.00 45.72 2.29
656 657 5.349543 CCCAAAAGACGTTGGTATGTAGTAC 59.650 44.000 3.43 0.00 45.72 2.73
659 660 7.814107 CCAAAAGACGTTGGTATGTAGTACTAA 59.186 37.037 3.61 0.00 42.74 2.24
661 662 9.933723 AAAAGACGTTGGTATGTAGTACTAATT 57.066 29.630 3.61 0.00 36.37 1.40
662 663 9.933723 AAAGACGTTGGTATGTAGTACTAATTT 57.066 29.630 3.61 0.00 36.37 1.82
741 744 7.524717 TGATATCCATCGAGTGTCAATCTTA 57.475 36.000 0.00 0.00 33.51 2.10
750 755 8.867935 CATCGAGTGTCAATCTTAATATCCATC 58.132 37.037 0.00 0.00 0.00 3.51
790 795 4.035684 CGTGAAGACATCGATTCATACGT 58.964 43.478 0.00 0.00 37.72 3.57
791 796 4.086075 CGTGAAGACATCGATTCATACGTG 60.086 45.833 0.00 0.00 37.72 4.49
799 804 5.291128 ACATCGATTCATACGTGAGGAAAAC 59.709 40.000 0.00 0.00 35.39 2.43
832 837 2.986479 CACTTGGATTTAGCAAAACCGC 59.014 45.455 0.00 0.00 0.00 5.68
842 847 0.240145 GCAAAACCGCAGAAGGTACC 59.760 55.000 2.73 2.73 45.21 3.34
851 856 1.135286 GCAGAAGGTACCATTGCTTGC 60.135 52.381 21.24 14.66 0.00 4.01
913 920 2.421388 CCAAGATTTGGCGGGTATCTCA 60.421 50.000 0.00 0.00 45.17 3.27
987 994 2.183046 GAGACCTCACCTCGCTGC 59.817 66.667 0.00 0.00 0.00 5.25
997 1004 0.324943 ACCTCGCTGCCTACAACAAT 59.675 50.000 0.00 0.00 0.00 2.71
998 1005 1.553248 ACCTCGCTGCCTACAACAATA 59.447 47.619 0.00 0.00 0.00 1.90
999 1006 1.933853 CCTCGCTGCCTACAACAATAC 59.066 52.381 0.00 0.00 0.00 1.89
1000 1007 2.418746 CCTCGCTGCCTACAACAATACT 60.419 50.000 0.00 0.00 0.00 2.12
1001 1008 2.604914 CTCGCTGCCTACAACAATACTG 59.395 50.000 0.00 0.00 0.00 2.74
1002 1009 1.665679 CGCTGCCTACAACAATACTGG 59.334 52.381 0.00 0.00 0.00 4.00
1003 1010 2.676750 CGCTGCCTACAACAATACTGGA 60.677 50.000 0.00 0.00 0.00 3.86
1004 1011 2.939103 GCTGCCTACAACAATACTGGAG 59.061 50.000 0.00 0.00 0.00 3.86
1005 1012 3.619979 GCTGCCTACAACAATACTGGAGT 60.620 47.826 0.00 0.00 0.00 3.85
1006 1013 4.382685 GCTGCCTACAACAATACTGGAGTA 60.383 45.833 0.00 0.00 34.67 2.59
1007 1014 5.080969 TGCCTACAACAATACTGGAGTAC 57.919 43.478 0.00 0.00 32.72 2.73
1030 1037 6.769512 ACTATTTTAGAGGAAGCAACAGACA 58.230 36.000 0.00 0.00 0.00 3.41
1122 1139 4.421554 CTCCTCCTCCAGCCCCCA 62.422 72.222 0.00 0.00 0.00 4.96
1291 1308 2.125350 CGCAGGAGAAGGGAGCAC 60.125 66.667 0.00 0.00 0.00 4.40
1381 1398 3.305064 GCTCATCCATCTAGAGGTTCGTC 60.305 52.174 3.36 0.00 0.00 4.20
1403 1420 3.821600 CCTACCATACGCACTGTCTATCT 59.178 47.826 0.00 0.00 0.00 1.98
1412 1429 1.137086 CACTGTCTATCTTCCCACCCG 59.863 57.143 0.00 0.00 0.00 5.28
1413 1430 1.273098 ACTGTCTATCTTCCCACCCGT 60.273 52.381 0.00 0.00 0.00 5.28
1414 1431 1.831736 CTGTCTATCTTCCCACCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
1415 1432 1.553248 TGTCTATCTTCCCACCCGTTG 59.447 52.381 0.00 0.00 0.00 4.10
1416 1433 1.829222 GTCTATCTTCCCACCCGTTGA 59.171 52.381 0.00 0.00 0.00 3.18
1417 1434 2.434702 GTCTATCTTCCCACCCGTTGAT 59.565 50.000 0.00 0.00 0.00 2.57
1418 1435 2.698797 TCTATCTTCCCACCCGTTGATC 59.301 50.000 0.00 0.00 0.00 2.92
1419 1436 0.546598 ATCTTCCCACCCGTTGATCC 59.453 55.000 0.00 0.00 0.00 3.36
1428 1445 2.615447 CACCCGTTGATCCATGAATCAG 59.385 50.000 0.00 0.00 37.01 2.90
1471 1505 1.285280 TCATCCATCCTTGACCCGTT 58.715 50.000 0.00 0.00 0.00 4.44
1508 1589 8.690203 TTTCTTAGTGGATGATCTTTCACAAA 57.310 30.769 19.34 9.86 33.85 2.83
1627 1709 7.967178 GGAGATGCCTTTTCAATGTTAATTTG 58.033 34.615 0.00 0.00 0.00 2.32
1629 1711 8.314143 AGATGCCTTTTCAATGTTAATTTGTG 57.686 30.769 0.00 0.00 0.00 3.33
1631 1713 9.202273 GATGCCTTTTCAATGTTAATTTGTGTA 57.798 29.630 0.00 0.00 0.00 2.90
1737 2023 0.468400 TACAAACAACCCAGGGTGGC 60.468 55.000 13.66 0.00 35.34 5.01
1784 2070 0.390603 TCCAACCGCAGAATGTACGG 60.391 55.000 0.00 0.00 45.48 4.02
1871 2163 3.026694 AGCTGCAAAATCCTGGTAATCC 58.973 45.455 1.02 0.00 0.00 3.01
1874 2166 4.026052 CTGCAAAATCCTGGTAATCCCTT 58.974 43.478 0.00 0.00 0.00 3.95
1875 2167 3.768757 TGCAAAATCCTGGTAATCCCTTG 59.231 43.478 0.00 0.00 0.00 3.61
2038 2375 2.030401 TGATGGGGCGTCGTTTTCG 61.030 57.895 0.00 0.00 45.64 3.46
2068 2405 0.468226 AAGGTCGAGCACAGGTGAAA 59.532 50.000 18.15 0.00 0.00 2.69
2078 2415 5.049405 CGAGCACAGGTGAAATTTCTAAGTT 60.049 40.000 18.64 2.11 0.00 2.66
2273 2651 6.157904 TCGTATAGTTTTCAACATGAACCGA 58.842 36.000 0.00 0.00 35.89 4.69
2279 2657 5.587043 AGTTTTCAACATGAACCGACAGTAA 59.413 36.000 0.00 0.00 35.89 2.24
2309 2720 6.815089 TCTGTTAATTTCAGCAACAACCATT 58.185 32.000 5.73 0.00 32.16 3.16
2320 2731 8.121305 TCAGCAACAACCATTGATTATTTAGT 57.879 30.769 0.00 0.00 0.00 2.24
2329 2740 9.912634 AACCATTGATTATTTAGTTGTGAACAG 57.087 29.630 0.00 0.00 0.00 3.16
2348 2771 5.904362 ACAGCATTCCTCATTTTTCTACC 57.096 39.130 0.00 0.00 0.00 3.18
2386 2809 3.368571 GGCTGTTCTGCTGGTGGC 61.369 66.667 2.15 0.00 42.22 5.01
2519 2950 4.406456 ACAAATGTGATCCACCAGCTAAA 58.594 39.130 0.00 0.00 32.73 1.85
2526 2957 4.333926 GTGATCCACCAGCTAAAGATTGTC 59.666 45.833 0.00 0.00 0.00 3.18
2534 2965 2.039879 AGCTAAAGATTGTCCCAACCGT 59.960 45.455 0.00 0.00 0.00 4.83
2637 3084 1.167851 ATGATGGCGTTGTTCACCTG 58.832 50.000 0.00 0.00 0.00 4.00
2784 3245 5.100751 AGAACTCTGATTTTTCAAGTGCG 57.899 39.130 0.00 0.00 0.00 5.34
2796 3257 0.512952 CAAGTGCGTAGTCTTGTGCC 59.487 55.000 0.00 0.00 37.05 5.01
2805 3266 3.363970 CGTAGTCTTGTGCCACAATCAAC 60.364 47.826 11.26 9.79 37.48 3.18
2839 3302 7.379529 GCAATATTTTTCCGTCCATGTGATTAG 59.620 37.037 0.00 0.00 0.00 1.73
2857 3321 7.041644 TGTGATTAGTGCCACTTTGTACTAAAC 60.042 37.037 1.02 0.00 38.61 2.01
2969 3441 3.007635 CCAACCGAGGTAGTTTCCATTC 58.992 50.000 0.00 0.00 0.00 2.67
2971 3443 3.611766 ACCGAGGTAGTTTCCATTCTG 57.388 47.619 0.00 0.00 0.00 3.02
3090 3566 5.221621 GGAGCTTATTAAGAGCATCAGGACT 60.222 44.000 14.03 0.00 42.56 3.85
3227 3729 4.391830 TCTTTGCCACAGATACGAAATGTC 59.608 41.667 0.00 0.00 0.00 3.06
3349 3867 6.796705 TTCCGTTTATTTTTCCTCTCTCAC 57.203 37.500 0.00 0.00 0.00 3.51
3354 3872 7.119846 CCGTTTATTTTTCCTCTCTCACTCAAT 59.880 37.037 0.00 0.00 0.00 2.57
3361 3879 6.627087 TTCCTCTCTCACTCAATACCAATT 57.373 37.500 0.00 0.00 0.00 2.32
3414 3933 2.084546 GCTTCCGTGTCAATAGGCTTT 58.915 47.619 0.00 0.00 0.00 3.51
3427 3946 0.811281 AGGCTTTAGGAACGCAATGC 59.189 50.000 0.00 0.00 0.00 3.56
3475 3994 0.107654 GGAGGACTGGGGATTGTTCG 60.108 60.000 0.00 0.00 0.00 3.95
3525 4044 4.287067 TCCCTATATGGCATCTCTTGGAAC 59.713 45.833 1.65 0.00 0.00 3.62
3567 4086 6.264744 GGCTTGGAAATAAGGTAGGGAATTAC 59.735 42.308 0.00 0.00 0.00 1.89
3624 4145 2.015736 TTCTTCTGCGAGGAATCTGC 57.984 50.000 0.00 0.00 0.00 4.26
3786 4322 1.278985 CAGTGGACAGTTGCCTCCATA 59.721 52.381 0.00 0.00 38.84 2.74
3788 4324 2.026822 AGTGGACAGTTGCCTCCATAAG 60.027 50.000 0.00 0.00 38.84 1.73
3800 4336 9.780186 AGTTGCCTCCATAAGTTATTATTAGAC 57.220 33.333 0.00 0.00 28.73 2.59
3802 4338 7.383687 TGCCTCCATAAGTTATTATTAGACCG 58.616 38.462 0.00 0.00 28.73 4.79
3828 4364 8.491152 GTGTCGAGATTAATTATGTCAATGAGG 58.509 37.037 0.00 0.00 0.00 3.86
3830 4366 7.872993 GTCGAGATTAATTATGTCAATGAGGGA 59.127 37.037 0.00 0.00 0.00 4.20
3935 4479 6.503524 ACAATGCGTCAAGTAAAAAGTTCAT 58.496 32.000 0.00 0.00 0.00 2.57
4001 4547 7.237982 TCTTCCTCATCCCTAAATTTGTTTCA 58.762 34.615 0.00 0.00 0.00 2.69
4034 4580 0.478507 ACACACTCCCCTTTCCCTTG 59.521 55.000 0.00 0.00 0.00 3.61
4073 4626 0.871722 TGTCGGAGTTGATTTTGGCG 59.128 50.000 0.00 0.00 0.00 5.69
4091 4644 1.047034 CGAATCTCGGGTAGGGGGTT 61.047 60.000 0.00 0.00 36.00 4.11
4104 4657 2.359967 GGGGTTCCGAGCTGCTAGT 61.360 63.158 0.15 0.00 0.00 2.57
4105 4658 1.153549 GGGTTCCGAGCTGCTAGTG 60.154 63.158 0.15 0.00 0.00 2.74
4142 4695 7.066645 GGTAACAAGAGACACAAGGTTTTTACT 59.933 37.037 0.00 0.00 0.00 2.24
4150 4703 7.054124 AGACACAAGGTTTTTACTCAGATTCA 58.946 34.615 0.00 0.00 0.00 2.57
4155 4708 6.374417 AGGTTTTTACTCAGATTCAGGCTA 57.626 37.500 0.00 0.00 0.00 3.93
4164 4717 3.840666 TCAGATTCAGGCTACCTCAAAGT 59.159 43.478 0.00 0.00 0.00 2.66
4193 4747 3.016736 CCCTACGTTCTGCATTGGATTT 58.983 45.455 0.00 0.00 0.00 2.17
4216 4770 7.864108 TTTATTGATTGTGGATGGAGTACAG 57.136 36.000 0.00 0.00 0.00 2.74
4223 4777 4.412843 TGTGGATGGAGTACAGAGTACAA 58.587 43.478 9.68 0.00 0.00 2.41
4237 4791 5.128171 ACAGAGTACAAGTGTTTCTACCACA 59.872 40.000 0.00 0.00 35.24 4.17
4242 4796 6.929606 AGTACAAGTGTTTCTACCACAAGATC 59.070 38.462 0.00 0.00 35.24 2.75
4243 4797 5.680619 ACAAGTGTTTCTACCACAAGATCA 58.319 37.500 0.00 0.00 35.24 2.92
4261 4815 1.613925 TCATCTATGGCCTCTACGTGC 59.386 52.381 3.32 0.00 0.00 5.34
4270 4824 1.076192 CTCTACGTGCCCTACCCCT 60.076 63.158 0.00 0.00 0.00 4.79
4285 4839 5.013808 CCCTACCCCTTGGTTTATATAGGTG 59.986 48.000 0.00 0.00 44.75 4.00
4286 4840 5.609708 CCTACCCCTTGGTTTATATAGGTGT 59.390 44.000 0.00 0.00 44.75 4.16
4289 4843 6.455241 ACCCCTTGGTTTATATAGGTGTCTA 58.545 40.000 0.00 0.00 44.75 2.59
4291 4845 6.785963 CCCCTTGGTTTATATAGGTGTCTAGA 59.214 42.308 0.00 0.00 0.00 2.43
4313 4867 6.308566 AGAGGTCTAGGGTTACAGATATGTC 58.691 44.000 0.00 0.00 0.00 3.06
4322 4876 4.498682 GGTTACAGATATGTCGGCTACGTT 60.499 45.833 0.00 0.00 41.85 3.99
4328 4882 5.747197 CAGATATGTCGGCTACGTTTTTAGT 59.253 40.000 0.00 0.00 41.85 2.24
4334 4888 5.106197 TGTCGGCTACGTTTTTAGTAGATCA 60.106 40.000 0.00 0.00 43.00 2.92
4344 4898 8.038944 ACGTTTTTAGTAGATCATGGTGTACAT 58.961 33.333 15.08 3.83 41.57 2.29
4362 4916 3.871485 ACATGACTTCTGATCTTGGAGC 58.129 45.455 0.00 0.00 0.00 4.70
4366 4920 1.760268 CTTCTGATCTTGGAGCGCGC 61.760 60.000 26.66 26.66 0.00 6.86
4390 4965 2.698797 CAAGCCTACGGGAATCCTCTTA 59.301 50.000 0.00 0.00 33.58 2.10
4394 4969 2.567615 CCTACGGGAATCCTCTTATGGG 59.432 54.545 0.00 0.00 33.58 4.00
4399 4974 1.416401 GGAATCCTCTTATGGGTGCGA 59.584 52.381 0.00 0.00 0.00 5.10
4423 4998 1.748732 TTAGTGAACCACCATGGGGA 58.251 50.000 18.14 0.00 43.37 4.81
4457 5032 2.202987 CTGGCCAGGAGATGACGC 60.203 66.667 26.14 0.00 0.00 5.19
4469 5045 1.940883 GATGACGCGGTGAGTACCCA 61.941 60.000 12.47 0.00 44.53 4.51
4490 5066 1.434188 AGTCCAAGACACCATCACCA 58.566 50.000 0.00 0.00 34.60 4.17
4496 5072 2.858476 ACACCATCACCAGGGGCA 60.858 61.111 0.00 0.00 30.69 5.36
4500 5076 1.000739 CCATCACCAGGGGCACATT 59.999 57.895 0.00 0.00 0.00 2.71
4501 5077 0.258484 CCATCACCAGGGGCACATTA 59.742 55.000 0.00 0.00 0.00 1.90
4507 5083 0.179018 CCAGGGGCACATTACCTAGC 60.179 60.000 0.00 0.00 32.22 3.42
4508 5084 0.546122 CAGGGGCACATTACCTAGCA 59.454 55.000 0.00 0.00 32.22 3.49
4511 5087 0.254747 GGGCACATTACCTAGCACCA 59.745 55.000 0.00 0.00 0.00 4.17
4515 5091 2.683742 GCACATTACCTAGCACCACCAT 60.684 50.000 0.00 0.00 0.00 3.55
4528 5104 0.326618 CCACCATACCACCCTCCTCT 60.327 60.000 0.00 0.00 0.00 3.69
4529 5105 0.833287 CACCATACCACCCTCCTCTG 59.167 60.000 0.00 0.00 0.00 3.35
4541 5117 3.330720 CCTCTGGCCCCGTCCTTT 61.331 66.667 0.00 0.00 0.00 3.11
4552 5128 2.165301 CGTCCTTTCGCCGATGTCC 61.165 63.158 0.00 0.00 0.00 4.02
4564 5140 1.338107 CGATGTCCCCTGCCTATGTA 58.662 55.000 0.00 0.00 0.00 2.29
4567 5143 0.693092 TGTCCCCTGCCTATGTACCC 60.693 60.000 0.00 0.00 0.00 3.69
4568 5144 1.074014 TCCCCTGCCTATGTACCCC 60.074 63.158 0.00 0.00 0.00 4.95
4569 5145 2.516888 CCCCTGCCTATGTACCCCG 61.517 68.421 0.00 0.00 0.00 5.73
4570 5146 2.516888 CCCTGCCTATGTACCCCGG 61.517 68.421 0.00 0.00 0.00 5.73
4571 5147 2.426023 CTGCCTATGTACCCCGGC 59.574 66.667 0.00 8.88 42.78 6.13
4597 5173 0.837940 GGTGGTCCCCATCTCCTAAC 59.162 60.000 0.00 0.00 35.28 2.34
4598 5174 0.837940 GTGGTCCCCATCTCCTAACC 59.162 60.000 0.00 0.00 35.28 2.85
4651 5227 2.915659 TCGGTTGAGGCGGTGTCT 60.916 61.111 0.00 0.00 0.00 3.41
4668 5244 0.820226 TCTGAGACCTCATCGGCTTG 59.180 55.000 0.00 0.00 39.13 4.01
4675 5251 1.452651 CTCATCGGCTTGGGTGCAT 60.453 57.895 0.00 0.00 34.04 3.96
4677 5253 1.140161 CATCGGCTTGGGTGCATTG 59.860 57.895 0.00 0.00 34.04 2.82
4694 5270 3.399181 GGGGTGGCGACCTCATCA 61.399 66.667 18.11 0.00 43.25 3.07
4738 5314 0.321741 TTGGTGGTGTGTTGTGTCGT 60.322 50.000 0.00 0.00 0.00 4.34
4740 5316 0.932399 GGTGGTGTGTTGTGTCGTAC 59.068 55.000 0.00 0.00 0.00 3.67
4742 5318 2.223782 GGTGGTGTGTTGTGTCGTACTA 60.224 50.000 0.00 0.00 0.00 1.82
4756 5332 1.485066 CGTACTAGATTGGGGCCTTGT 59.515 52.381 0.84 0.00 0.00 3.16
4792 5368 2.034066 CAGGCCATCACCGTGGTT 59.966 61.111 5.01 0.00 41.47 3.67
4793 5369 1.603455 CAGGCCATCACCGTGGTTT 60.603 57.895 5.01 0.00 41.47 3.27
4795 5371 1.602323 GGCCATCACCGTGGTTTGA 60.602 57.895 0.00 0.00 41.47 2.69
4808 5384 1.700739 TGGTTTGACGGGTCTATGGTT 59.299 47.619 0.00 0.00 0.00 3.67
4818 5394 2.124570 CTATGGTTGCGCTGGCCT 60.125 61.111 9.73 1.43 38.85 5.19
4830 5406 1.004560 CTGGCCTTTCTCTGTCGCA 60.005 57.895 3.32 0.00 0.00 5.10
4831 5407 0.392193 CTGGCCTTTCTCTGTCGCAT 60.392 55.000 3.32 0.00 0.00 4.73
4840 5416 1.642037 CTCTGTCGCATGGTTGGCAG 61.642 60.000 0.00 0.00 0.00 4.85
4866 5442 2.945984 CATGGTGTTTGCTCGCGT 59.054 55.556 5.77 0.00 0.00 6.01
4868 5444 3.254014 ATGGTGTTTGCTCGCGTGC 62.254 57.895 25.10 25.10 0.00 5.34
4883 5459 0.240945 CGTGCTTGGTTGGGTTCATC 59.759 55.000 0.00 0.00 0.00 2.92
4901 5477 2.492773 CCATGCTCGATTTGGGCCC 61.493 63.158 17.59 17.59 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.117156 CCCTGGCTTGGCATCTTCG 61.117 63.158 0.00 0.00 0.00 3.79
2 3 0.613012 GTTCCCTGGCTTGGCATCTT 60.613 55.000 0.00 0.00 0.00 2.40
8 9 4.351054 AGCGGTTCCCTGGCTTGG 62.351 66.667 0.00 0.00 31.91 3.61
11 12 3.710722 CTGAGCGGTTCCCTGGCT 61.711 66.667 0.00 0.00 40.29 4.75
13 14 3.965539 CTGCTGAGCGGTTCCCTGG 62.966 68.421 4.80 0.00 0.00 4.45
15 16 4.400961 GCTGCTGAGCGGTTCCCT 62.401 66.667 15.60 0.00 37.24 4.20
23 24 0.465097 ATGGTGGTATGCTGCTGAGC 60.465 55.000 0.00 0.00 46.44 4.26
24 25 1.306148 CATGGTGGTATGCTGCTGAG 58.694 55.000 0.00 0.00 0.00 3.35
25 26 0.107066 CCATGGTGGTATGCTGCTGA 60.107 55.000 2.57 0.00 31.35 4.26
26 27 2.411535 CCATGGTGGTATGCTGCTG 58.588 57.895 2.57 0.00 31.35 4.41
27 28 4.993307 CCATGGTGGTATGCTGCT 57.007 55.556 2.57 0.00 31.35 4.24
40 41 1.473965 CCGACTCCAGATCCAACCATG 60.474 57.143 0.00 0.00 0.00 3.66
41 42 0.833287 CCGACTCCAGATCCAACCAT 59.167 55.000 0.00 0.00 0.00 3.55
42 43 0.252057 TCCGACTCCAGATCCAACCA 60.252 55.000 0.00 0.00 0.00 3.67
43 44 0.461961 CTCCGACTCCAGATCCAACC 59.538 60.000 0.00 0.00 0.00 3.77
44 45 1.187087 ACTCCGACTCCAGATCCAAC 58.813 55.000 0.00 0.00 0.00 3.77
45 46 1.550524 CAACTCCGACTCCAGATCCAA 59.449 52.381 0.00 0.00 0.00 3.53
46 47 1.186200 CAACTCCGACTCCAGATCCA 58.814 55.000 0.00 0.00 0.00 3.41
47 48 0.179097 GCAACTCCGACTCCAGATCC 60.179 60.000 0.00 0.00 0.00 3.36
48 49 0.526524 CGCAACTCCGACTCCAGATC 60.527 60.000 0.00 0.00 0.00 2.75
49 50 0.965866 TCGCAACTCCGACTCCAGAT 60.966 55.000 0.00 0.00 31.36 2.90
50 51 1.587043 CTCGCAACTCCGACTCCAGA 61.587 60.000 0.00 0.00 33.12 3.86
51 52 1.153939 CTCGCAACTCCGACTCCAG 60.154 63.158 0.00 0.00 33.12 3.86
52 53 0.965866 ATCTCGCAACTCCGACTCCA 60.966 55.000 0.00 0.00 33.12 3.86
53 54 0.248702 GATCTCGCAACTCCGACTCC 60.249 60.000 0.00 0.00 33.12 3.85
54 55 0.248702 GGATCTCGCAACTCCGACTC 60.249 60.000 0.00 0.00 33.12 3.36
55 56 0.965866 TGGATCTCGCAACTCCGACT 60.966 55.000 0.00 0.00 33.12 4.18
56 57 0.802607 GTGGATCTCGCAACTCCGAC 60.803 60.000 0.00 0.00 33.12 4.79
57 58 1.511305 GTGGATCTCGCAACTCCGA 59.489 57.895 0.00 0.00 35.68 4.55
58 59 1.519455 GGTGGATCTCGCAACTCCG 60.519 63.158 0.00 0.00 31.36 4.63
59 60 1.519455 CGGTGGATCTCGCAACTCC 60.519 63.158 0.00 0.00 0.00 3.85
60 61 1.519455 CCGGTGGATCTCGCAACTC 60.519 63.158 0.00 0.00 0.00 3.01
61 62 2.283529 ACCGGTGGATCTCGCAACT 61.284 57.895 6.12 0.00 0.00 3.16
62 63 2.100631 CACCGGTGGATCTCGCAAC 61.101 63.158 27.57 0.00 0.00 4.17
63 64 2.225791 CTCACCGGTGGATCTCGCAA 62.226 60.000 33.40 10.65 0.00 4.85
64 65 2.678580 TCACCGGTGGATCTCGCA 60.679 61.111 33.40 9.64 0.00 5.10
65 66 2.105128 CTCACCGGTGGATCTCGC 59.895 66.667 33.40 0.00 0.00 5.03
66 67 1.729470 CTCCTCACCGGTGGATCTCG 61.729 65.000 33.40 14.54 36.19 4.04
67 68 2.022240 GCTCCTCACCGGTGGATCTC 62.022 65.000 33.40 16.53 36.19 2.75
68 69 2.060980 GCTCCTCACCGGTGGATCT 61.061 63.158 33.40 0.00 36.19 2.75
69 70 2.060980 AGCTCCTCACCGGTGGATC 61.061 63.158 33.40 19.40 36.19 3.36
70 71 2.039624 AGCTCCTCACCGGTGGAT 59.960 61.111 33.40 14.20 36.19 3.41
71 72 2.997315 CAGCTCCTCACCGGTGGA 60.997 66.667 33.40 22.81 35.48 4.02
72 73 4.087892 CCAGCTCCTCACCGGTGG 62.088 72.222 33.40 22.94 41.71 4.61
73 74 2.997315 TCCAGCTCCTCACCGGTG 60.997 66.667 29.26 29.26 0.00 4.94
74 75 2.997897 GTCCAGCTCCTCACCGGT 60.998 66.667 0.00 0.00 0.00 5.28
75 76 2.997315 TGTCCAGCTCCTCACCGG 60.997 66.667 0.00 0.00 0.00 5.28
76 77 2.575993 CTGTCCAGCTCCTCACCG 59.424 66.667 0.00 0.00 0.00 4.94
86 87 1.595882 CTCCCTGTCAGCTGTCCAG 59.404 63.158 21.65 21.65 0.00 3.86
87 88 2.587247 GCTCCCTGTCAGCTGTCCA 61.587 63.158 14.67 10.86 33.75 4.02
88 89 2.267324 GCTCCCTGTCAGCTGTCC 59.733 66.667 14.67 6.40 33.75 4.02
89 90 1.079266 CTGCTCCCTGTCAGCTGTC 60.079 63.158 14.67 9.06 37.79 3.51
90 91 0.908656 ATCTGCTCCCTGTCAGCTGT 60.909 55.000 14.67 0.00 37.79 4.40
91 92 0.462225 CATCTGCTCCCTGTCAGCTG 60.462 60.000 7.63 7.63 37.79 4.24
92 93 0.616964 TCATCTGCTCCCTGTCAGCT 60.617 55.000 0.00 0.00 37.79 4.24
93 94 0.461693 GTCATCTGCTCCCTGTCAGC 60.462 60.000 0.00 0.00 37.40 4.26
94 95 0.179116 CGTCATCTGCTCCCTGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
95 96 0.900182 ACGTCATCTGCTCCCTGTCA 60.900 55.000 0.00 0.00 0.00 3.58
96 97 0.459237 CACGTCATCTGCTCCCTGTC 60.459 60.000 0.00 0.00 0.00 3.51
97 98 1.593787 CACGTCATCTGCTCCCTGT 59.406 57.895 0.00 0.00 0.00 4.00
98 99 1.153489 CCACGTCATCTGCTCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
99 100 2.362369 CCCACGTCATCTGCTCCCT 61.362 63.158 0.00 0.00 0.00 4.20
100 101 2.187946 CCCACGTCATCTGCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
101 102 2.512515 GCCCACGTCATCTGCTCC 60.513 66.667 0.00 0.00 0.00 4.70
102 103 2.887568 CGCCCACGTCATCTGCTC 60.888 66.667 0.00 0.00 33.53 4.26
103 104 4.457496 CCGCCCACGTCATCTGCT 62.457 66.667 0.00 0.00 37.70 4.24
105 106 3.723235 CTCCCGCCCACGTCATCTG 62.723 68.421 0.00 0.00 37.70 2.90
106 107 3.461773 CTCCCGCCCACGTCATCT 61.462 66.667 0.00 0.00 37.70 2.90
107 108 3.432051 CTCTCCCGCCCACGTCATC 62.432 68.421 0.00 0.00 37.70 2.92
108 109 3.461773 CTCTCCCGCCCACGTCAT 61.462 66.667 0.00 0.00 37.70 3.06
109 110 4.671590 TCTCTCCCGCCCACGTCA 62.672 66.667 0.00 0.00 37.70 4.35
110 111 3.827898 CTCTCTCCCGCCCACGTC 61.828 72.222 0.00 0.00 37.70 4.34
111 112 3.881019 TTCTCTCTCCCGCCCACGT 62.881 63.158 0.00 0.00 37.70 4.49
112 113 2.167398 TTTTCTCTCTCCCGCCCACG 62.167 60.000 0.00 0.00 39.67 4.94
113 114 0.036306 TTTTTCTCTCTCCCGCCCAC 59.964 55.000 0.00 0.00 0.00 4.61
114 115 2.458892 TTTTTCTCTCTCCCGCCCA 58.541 52.632 0.00 0.00 0.00 5.36
130 131 4.341235 GGGGCAACTTTCTCTAGTGTTTTT 59.659 41.667 0.00 0.00 0.00 1.94
131 132 3.889538 GGGGCAACTTTCTCTAGTGTTTT 59.110 43.478 0.00 0.00 0.00 2.43
132 133 3.487372 GGGGCAACTTTCTCTAGTGTTT 58.513 45.455 0.00 0.00 0.00 2.83
133 134 2.550208 CGGGGCAACTTTCTCTAGTGTT 60.550 50.000 0.00 0.00 0.00 3.32
134 135 1.002087 CGGGGCAACTTTCTCTAGTGT 59.998 52.381 0.00 0.00 0.00 3.55
135 136 1.726853 CGGGGCAACTTTCTCTAGTG 58.273 55.000 0.00 0.00 0.00 2.74
136 137 0.036294 GCGGGGCAACTTTCTCTAGT 60.036 55.000 0.00 0.00 0.00 2.57
137 138 0.744771 GGCGGGGCAACTTTCTCTAG 60.745 60.000 0.00 0.00 0.00 2.43
138 139 1.298667 GGCGGGGCAACTTTCTCTA 59.701 57.895 0.00 0.00 0.00 2.43
139 140 2.034221 GGCGGGGCAACTTTCTCT 59.966 61.111 0.00 0.00 0.00 3.10
140 141 3.431725 CGGCGGGGCAACTTTCTC 61.432 66.667 0.00 0.00 0.00 2.87
158 159 4.240103 TCCGATGGCAGATGGCGG 62.240 66.667 0.00 0.00 46.16 6.13
159 160 2.969238 GTCCGATGGCAGATGGCG 60.969 66.667 1.68 0.00 46.16 5.69
160 161 2.969238 CGTCCGATGGCAGATGGC 60.969 66.667 0.00 0.00 43.74 4.40
161 162 2.280389 CCGTCCGATGGCAGATGG 60.280 66.667 0.00 0.00 33.00 3.51
162 163 1.592669 GTCCGTCCGATGGCAGATG 60.593 63.158 1.22 0.00 0.00 2.90
163 164 1.758514 AGTCCGTCCGATGGCAGAT 60.759 57.895 1.22 0.00 0.00 2.90
164 165 2.362503 AGTCCGTCCGATGGCAGA 60.363 61.111 1.22 0.00 0.00 4.26
165 166 2.202797 CAGTCCGTCCGATGGCAG 60.203 66.667 1.22 0.00 0.00 4.85
166 167 4.451150 GCAGTCCGTCCGATGGCA 62.451 66.667 1.22 0.00 0.00 4.92
167 168 4.148825 AGCAGTCCGTCCGATGGC 62.149 66.667 1.22 0.00 0.00 4.40
168 169 2.105128 GAGCAGTCCGTCCGATGG 59.895 66.667 0.00 0.00 0.00 3.51
169 170 1.226802 CAGAGCAGTCCGTCCGATG 60.227 63.158 0.00 0.00 0.00 3.84
170 171 2.418910 CCAGAGCAGTCCGTCCGAT 61.419 63.158 0.00 0.00 0.00 4.18
171 172 3.062466 CCAGAGCAGTCCGTCCGA 61.062 66.667 0.00 0.00 0.00 4.55
172 173 3.374402 ACCAGAGCAGTCCGTCCG 61.374 66.667 0.00 0.00 0.00 4.79
173 174 2.262915 CACCAGAGCAGTCCGTCC 59.737 66.667 0.00 0.00 0.00 4.79
174 175 2.262915 CCACCAGAGCAGTCCGTC 59.737 66.667 0.00 0.00 0.00 4.79
175 176 4.008933 GCCACCAGAGCAGTCCGT 62.009 66.667 0.00 0.00 0.00 4.69
177 178 3.695606 TCGCCACCAGAGCAGTCC 61.696 66.667 0.00 0.00 0.00 3.85
178 179 2.433318 GTCGCCACCAGAGCAGTC 60.433 66.667 0.00 0.00 0.00 3.51
179 180 4.363990 CGTCGCCACCAGAGCAGT 62.364 66.667 0.00 0.00 0.00 4.40
180 181 3.978723 CTCGTCGCCACCAGAGCAG 62.979 68.421 0.00 0.00 0.00 4.24
181 182 4.056125 CTCGTCGCCACCAGAGCA 62.056 66.667 0.00 0.00 0.00 4.26
182 183 4.803426 CCTCGTCGCCACCAGAGC 62.803 72.222 0.00 0.00 0.00 4.09
183 184 1.994507 CTACCTCGTCGCCACCAGAG 61.995 65.000 0.00 0.00 0.00 3.35
184 185 2.034532 TACCTCGTCGCCACCAGA 59.965 61.111 0.00 0.00 0.00 3.86
185 186 2.267681 GACTACCTCGTCGCCACCAG 62.268 65.000 0.00 0.00 0.00 4.00
186 187 2.282674 ACTACCTCGTCGCCACCA 60.283 61.111 0.00 0.00 0.00 4.17
187 188 2.488820 GACTACCTCGTCGCCACC 59.511 66.667 0.00 0.00 0.00 4.61
196 197 2.424733 GCCCCTCCACGACTACCTC 61.425 68.421 0.00 0.00 0.00 3.85
197 198 2.363925 GCCCCTCCACGACTACCT 60.364 66.667 0.00 0.00 0.00 3.08
198 199 2.363925 AGCCCCTCCACGACTACC 60.364 66.667 0.00 0.00 0.00 3.18
199 200 1.542187 AACAGCCCCTCCACGACTAC 61.542 60.000 0.00 0.00 0.00 2.73
200 201 0.834687 AAACAGCCCCTCCACGACTA 60.835 55.000 0.00 0.00 0.00 2.59
201 202 1.705997 AAAACAGCCCCTCCACGACT 61.706 55.000 0.00 0.00 0.00 4.18
202 203 1.228154 AAAACAGCCCCTCCACGAC 60.228 57.895 0.00 0.00 0.00 4.34
203 204 1.072505 GAAAACAGCCCCTCCACGA 59.927 57.895 0.00 0.00 0.00 4.35
204 205 2.325082 CGAAAACAGCCCCTCCACG 61.325 63.158 0.00 0.00 0.00 4.94
205 206 1.971695 CCGAAAACAGCCCCTCCAC 60.972 63.158 0.00 0.00 0.00 4.02
206 207 2.434331 CCGAAAACAGCCCCTCCA 59.566 61.111 0.00 0.00 0.00 3.86
207 208 1.971695 CACCGAAAACAGCCCCTCC 60.972 63.158 0.00 0.00 0.00 4.30
208 209 0.322546 ATCACCGAAAACAGCCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
209 210 0.609131 CATCACCGAAAACAGCCCCT 60.609 55.000 0.00 0.00 0.00 4.79
210 211 1.595093 CCATCACCGAAAACAGCCCC 61.595 60.000 0.00 0.00 0.00 5.80
211 212 1.883021 CCATCACCGAAAACAGCCC 59.117 57.895 0.00 0.00 0.00 5.19
212 213 1.212751 GCCATCACCGAAAACAGCC 59.787 57.895 0.00 0.00 0.00 4.85
213 214 1.154225 CGCCATCACCGAAAACAGC 60.154 57.895 0.00 0.00 0.00 4.40
214 215 0.591170 AACGCCATCACCGAAAACAG 59.409 50.000 0.00 0.00 0.00 3.16
215 216 0.309302 CAACGCCATCACCGAAAACA 59.691 50.000 0.00 0.00 0.00 2.83
216 217 0.386731 CCAACGCCATCACCGAAAAC 60.387 55.000 0.00 0.00 0.00 2.43
217 218 0.820074 ACCAACGCCATCACCGAAAA 60.820 50.000 0.00 0.00 0.00 2.29
218 219 1.228003 ACCAACGCCATCACCGAAA 60.228 52.632 0.00 0.00 0.00 3.46
219 220 1.963855 CACCAACGCCATCACCGAA 60.964 57.895 0.00 0.00 0.00 4.30
220 221 2.358125 CACCAACGCCATCACCGA 60.358 61.111 0.00 0.00 0.00 4.69
430 431 5.048846 ACCAACAAACTAACAGAGGTGAT 57.951 39.130 0.00 0.00 0.00 3.06
431 432 4.497291 ACCAACAAACTAACAGAGGTGA 57.503 40.909 0.00 0.00 0.00 4.02
437 438 6.262273 ACACTATCCAACCAACAAACTAACAG 59.738 38.462 0.00 0.00 0.00 3.16
445 446 4.787551 AGACAACACTATCCAACCAACAA 58.212 39.130 0.00 0.00 0.00 2.83
446 447 4.431416 AGACAACACTATCCAACCAACA 57.569 40.909 0.00 0.00 0.00 3.33
457 458 6.037830 GGTGCTTCAACTTTAAGACAACACTA 59.962 38.462 0.00 0.00 0.00 2.74
463 464 5.906113 TTTGGTGCTTCAACTTTAAGACA 57.094 34.783 0.00 0.00 0.00 3.41
464 465 7.114953 GCTTATTTGGTGCTTCAACTTTAAGAC 59.885 37.037 0.00 0.00 0.00 3.01
465 466 7.145323 GCTTATTTGGTGCTTCAACTTTAAGA 58.855 34.615 0.00 0.00 0.00 2.10
466 467 6.922957 TGCTTATTTGGTGCTTCAACTTTAAG 59.077 34.615 0.00 0.00 0.00 1.85
467 468 6.810911 TGCTTATTTGGTGCTTCAACTTTAA 58.189 32.000 0.00 0.00 0.00 1.52
468 469 6.398234 TGCTTATTTGGTGCTTCAACTTTA 57.602 33.333 0.00 0.00 0.00 1.85
469 470 5.275067 TGCTTATTTGGTGCTTCAACTTT 57.725 34.783 0.00 0.00 0.00 2.66
470 471 4.935352 TGCTTATTTGGTGCTTCAACTT 57.065 36.364 0.00 0.00 0.00 2.66
475 476 4.970662 TCTCATGCTTATTTGGTGCTTC 57.029 40.909 0.00 0.00 0.00 3.86
582 583 8.854614 ACTTACAATGCTAGAAATTTCTCACT 57.145 30.769 23.70 4.56 38.70 3.41
583 584 9.334693 CAACTTACAATGCTAGAAATTTCTCAC 57.665 33.333 23.70 16.76 38.70 3.51
586 587 9.507329 TCTCAACTTACAATGCTAGAAATTTCT 57.493 29.630 23.53 23.53 41.24 2.52
590 591 8.680903 CCATTCTCAACTTACAATGCTAGAAAT 58.319 33.333 0.00 0.00 0.00 2.17
591 592 7.882791 TCCATTCTCAACTTACAATGCTAGAAA 59.117 33.333 0.00 0.00 0.00 2.52
592 593 7.394016 TCCATTCTCAACTTACAATGCTAGAA 58.606 34.615 0.00 0.00 0.00 2.10
593 594 6.946340 TCCATTCTCAACTTACAATGCTAGA 58.054 36.000 0.00 0.00 0.00 2.43
594 595 7.615582 TTCCATTCTCAACTTACAATGCTAG 57.384 36.000 0.00 0.00 0.00 3.42
595 596 7.994425 TTTCCATTCTCAACTTACAATGCTA 57.006 32.000 0.00 0.00 0.00 3.49
596 597 6.899393 TTTCCATTCTCAACTTACAATGCT 57.101 33.333 0.00 0.00 0.00 3.79
597 598 7.814107 TCATTTTCCATTCTCAACTTACAATGC 59.186 33.333 0.00 0.00 0.00 3.56
598 599 9.350357 CTCATTTTCCATTCTCAACTTACAATG 57.650 33.333 0.00 0.00 0.00 2.82
599 600 8.526147 CCTCATTTTCCATTCTCAACTTACAAT 58.474 33.333 0.00 0.00 0.00 2.71
674 677 2.304761 ACCACTACGTCATCCCAATGTT 59.695 45.455 0.00 0.00 34.32 2.71
676 679 2.279741 CACCACTACGTCATCCCAATG 58.720 52.381 0.00 0.00 0.00 2.82
677 680 1.406887 GCACCACTACGTCATCCCAAT 60.407 52.381 0.00 0.00 0.00 3.16
741 744 7.179872 TGGATTGAGATTCTCTCGATGGATATT 59.820 37.037 14.54 0.00 45.27 1.28
750 755 3.111838 CACGTGGATTGAGATTCTCTCG 58.888 50.000 14.54 11.04 46.25 4.04
764 769 2.230266 TGAATCGATGTCTTCACGTGGA 59.770 45.455 17.00 5.89 31.51 4.02
820 825 1.975660 ACCTTCTGCGGTTTTGCTAA 58.024 45.000 0.00 0.00 31.94 3.09
832 837 2.095059 GTGCAAGCAATGGTACCTTCTG 60.095 50.000 14.36 8.63 0.00 3.02
851 856 5.739358 GCTACTAGCCTACTACCATTTGGTG 60.739 48.000 12.54 5.27 41.53 4.17
865 870 3.990959 AAAGAGCTTTGCTACTAGCCT 57.009 42.857 5.58 0.00 41.51 4.58
866 871 4.003648 TGAAAAGAGCTTTGCTACTAGCC 58.996 43.478 5.58 0.00 41.51 3.93
867 872 4.436718 GCTGAAAAGAGCTTTGCTACTAGC 60.437 45.833 0.61 0.61 39.88 3.42
868 873 5.215239 GCTGAAAAGAGCTTTGCTACTAG 57.785 43.478 2.84 0.00 39.88 2.57
987 994 9.886132 AAAATAGTACTCCAGTATTGTTGTAGG 57.114 33.333 0.00 0.00 33.77 3.18
997 1004 7.837689 TGCTTCCTCTAAAATAGTACTCCAGTA 59.162 37.037 0.00 0.00 0.00 2.74
998 1005 6.668283 TGCTTCCTCTAAAATAGTACTCCAGT 59.332 38.462 0.00 0.00 0.00 4.00
999 1006 7.113658 TGCTTCCTCTAAAATAGTACTCCAG 57.886 40.000 0.00 0.00 0.00 3.86
1000 1007 7.038587 TGTTGCTTCCTCTAAAATAGTACTCCA 60.039 37.037 0.00 0.00 0.00 3.86
1001 1008 7.328737 TGTTGCTTCCTCTAAAATAGTACTCC 58.671 38.462 0.00 0.00 0.00 3.85
1002 1009 8.251721 TCTGTTGCTTCCTCTAAAATAGTACTC 58.748 37.037 0.00 0.00 0.00 2.59
1003 1010 8.035984 GTCTGTTGCTTCCTCTAAAATAGTACT 58.964 37.037 0.00 0.00 0.00 2.73
1004 1011 7.817962 TGTCTGTTGCTTCCTCTAAAATAGTAC 59.182 37.037 0.00 0.00 0.00 2.73
1005 1012 7.817962 GTGTCTGTTGCTTCCTCTAAAATAGTA 59.182 37.037 0.00 0.00 0.00 1.82
1006 1013 6.651225 GTGTCTGTTGCTTCCTCTAAAATAGT 59.349 38.462 0.00 0.00 0.00 2.12
1007 1014 6.092807 GGTGTCTGTTGCTTCCTCTAAAATAG 59.907 42.308 0.00 0.00 0.00 1.73
1030 1037 2.158519 AGAGAAATGGTTTGGTTCCGGT 60.159 45.455 0.00 0.00 0.00 5.28
1174 1191 0.464870 AGCAGCAGCAGTATCAGGAG 59.535 55.000 3.17 0.00 45.49 3.69
1176 1193 0.107800 ACAGCAGCAGCAGTATCAGG 60.108 55.000 3.17 0.00 45.49 3.86
1208 1225 4.736896 AAAGCGGCGGACGGAGAC 62.737 66.667 9.78 0.00 44.51 3.36
1291 1308 2.358737 GGTCCCGTCCAAGCACAG 60.359 66.667 0.00 0.00 0.00 3.66
1314 1331 0.904865 CTCTCTGCAGGTGGTACCCA 60.905 60.000 15.13 0.00 39.75 4.51
1381 1398 3.821600 AGATAGACAGTGCGTATGGTAGG 59.178 47.826 0.00 0.00 0.00 3.18
1383 1400 4.277672 GGAAGATAGACAGTGCGTATGGTA 59.722 45.833 0.00 0.00 0.00 3.25
1384 1401 3.068307 GGAAGATAGACAGTGCGTATGGT 59.932 47.826 0.00 0.00 0.00 3.55
1385 1402 3.553096 GGGAAGATAGACAGTGCGTATGG 60.553 52.174 0.00 0.00 0.00 2.74
1386 1403 3.068165 TGGGAAGATAGACAGTGCGTATG 59.932 47.826 0.00 0.00 0.00 2.39
1387 1404 3.068307 GTGGGAAGATAGACAGTGCGTAT 59.932 47.826 0.00 0.00 0.00 3.06
1388 1405 2.426024 GTGGGAAGATAGACAGTGCGTA 59.574 50.000 0.00 0.00 0.00 4.42
1389 1406 1.204941 GTGGGAAGATAGACAGTGCGT 59.795 52.381 0.00 0.00 0.00 5.24
1403 1420 0.034574 CATGGATCAACGGGTGGGAA 60.035 55.000 0.00 0.00 0.00 3.97
1412 1429 2.292267 ACGGCTGATTCATGGATCAAC 58.708 47.619 17.50 13.02 35.74 3.18
1413 1430 2.684374 CAACGGCTGATTCATGGATCAA 59.316 45.455 17.50 2.49 35.74 2.57
1414 1431 2.291365 CAACGGCTGATTCATGGATCA 58.709 47.619 16.04 16.04 34.96 2.92
1415 1432 1.002033 GCAACGGCTGATTCATGGATC 60.002 52.381 7.08 7.08 36.96 3.36
1416 1433 1.027357 GCAACGGCTGATTCATGGAT 58.973 50.000 0.00 0.00 36.96 3.41
1417 1434 2.481212 GCAACGGCTGATTCATGGA 58.519 52.632 0.00 0.00 36.96 3.41
1428 1445 2.285834 CGTGATCATAAGAAGCAACGGC 60.286 50.000 0.00 0.00 41.61 5.68
1556 1638 1.477195 CCCGGGTCTCTATCTCGAACT 60.477 57.143 14.18 0.00 0.00 3.01
1617 1699 9.369904 GGCATCTTTTGATACACAAATTAACAT 57.630 29.630 0.00 0.00 45.99 2.71
1627 1709 6.985188 TGTAGAAGGCATCTTTTGATACAC 57.015 37.500 0.00 0.00 39.71 2.90
1629 1711 7.792374 TCATGTAGAAGGCATCTTTTGATAC 57.208 36.000 0.00 0.00 39.71 2.24
1631 1713 6.264744 CCATCATGTAGAAGGCATCTTTTGAT 59.735 38.462 0.00 2.23 39.71 2.57
1784 2070 1.289800 GAAGTTGGACGAACCGAGCC 61.290 60.000 0.00 0.00 42.61 4.70
1871 2163 5.192927 TGGAACAAATAGATAGGCACAAGG 58.807 41.667 0.00 0.00 31.92 3.61
1953 2286 2.009774 CGCTGATCAAAGTTAGTGGGG 58.990 52.381 0.00 0.00 0.00 4.96
2068 2405 6.102663 CGACATCAGACCAGAACTTAGAAAT 58.897 40.000 0.00 0.00 0.00 2.17
2078 2415 2.937519 AGATAGCGACATCAGACCAGA 58.062 47.619 0.00 0.00 0.00 3.86
2279 2657 9.463443 GTTGTTGCTGAAATTAACAGAGTAATT 57.537 29.630 14.18 0.00 37.54 1.40
2309 2720 8.243426 GGAATGCTGTTCACAACTAAATAATCA 58.757 33.333 5.09 0.00 0.00 2.57
2320 2731 5.534207 AAAATGAGGAATGCTGTTCACAA 57.466 34.783 5.09 0.00 0.00 3.33
2329 2740 5.859205 ATGGGTAGAAAAATGAGGAATGC 57.141 39.130 0.00 0.00 0.00 3.56
2348 2771 1.284785 TGTAAGGAGGGCCTGAAATGG 59.715 52.381 12.95 0.00 46.28 3.16
2386 2809 2.138320 CAATGCAGTATCGTGGCTAGG 58.862 52.381 0.00 0.00 0.00 3.02
2519 2950 8.932155 TGAAATCATCACGGTTGGGACAATCT 62.932 42.308 0.00 0.00 36.83 2.40
2526 2957 2.162208 CACTGAAATCATCACGGTTGGG 59.838 50.000 0.00 0.00 33.47 4.12
2534 2965 4.823442 AGTTCAAGTGCACTGAAATCATCA 59.177 37.500 22.49 0.73 36.38 3.07
2637 3084 1.470098 CATGTCCAACAGCTAACCTGC 59.530 52.381 0.00 0.00 45.78 4.85
2687 3134 4.885907 AGATGACCACAAGGCTTGATTATG 59.114 41.667 32.50 19.51 39.06 1.90
2784 3245 3.563808 TGTTGATTGTGGCACAAGACTAC 59.436 43.478 33.41 30.30 44.16 2.73
2796 3257 7.410800 AATATTGCAGTGTTTGTTGATTGTG 57.589 32.000 0.00 0.00 0.00 3.33
2805 3266 5.118510 GGACGGAAAAATATTGCAGTGTTTG 59.881 40.000 4.74 0.00 0.00 2.93
2839 3302 2.546789 AGCGTTTAGTACAAAGTGGCAC 59.453 45.455 10.29 10.29 0.00 5.01
2969 3441 3.719924 TGGCAAGAAAATCAAACTGCAG 58.280 40.909 13.48 13.48 0.00 4.41
2971 3443 5.473039 AGTATGGCAAGAAAATCAAACTGC 58.527 37.500 0.00 0.00 0.00 4.40
3090 3566 4.943705 GCAGAGTTGAGAATAAACATGGGA 59.056 41.667 0.00 0.00 0.00 4.37
3155 3655 7.497925 TTAAAAGAGAAGTTGGAAGAAGAGC 57.502 36.000 0.00 0.00 0.00 4.09
3156 3656 9.114952 ACTTTAAAAGAGAAGTTGGAAGAAGAG 57.885 33.333 0.00 0.00 32.43 2.85
3203 3705 4.393062 ACATTTCGTATCTGTGGCAAAGAG 59.607 41.667 13.75 0.00 0.00 2.85
3227 3729 1.737793 GCCGATGAAACTGGTACAAGG 59.262 52.381 1.45 0.00 38.70 3.61
3349 3867 5.640732 CACGGAAAAGGAATTGGTATTGAG 58.359 41.667 0.00 0.00 0.00 3.02
3354 3872 2.865079 TGCACGGAAAAGGAATTGGTA 58.135 42.857 0.00 0.00 0.00 3.25
3361 3879 2.690497 TGTTTCATTGCACGGAAAAGGA 59.310 40.909 12.19 0.00 35.03 3.36
3414 3933 0.676466 CACCCAGCATTGCGTTCCTA 60.676 55.000 2.38 0.00 0.00 2.94
3427 3946 2.669113 CGACAACATTCAATGCACCCAG 60.669 50.000 0.00 0.00 0.00 4.45
3441 3960 4.082190 CAGTCCTCCTTATCTTCGACAACA 60.082 45.833 0.00 0.00 0.00 3.33
3475 3994 3.061831 CAGTGAGTGAAGCATGAATCGAC 59.938 47.826 0.00 0.00 0.00 4.20
3525 4044 0.105778 GCCTCGGGGAGATTTCTGAG 59.894 60.000 4.80 0.00 33.58 3.35
3610 4131 3.267860 GCCGCAGATTCCTCGCAG 61.268 66.667 0.00 0.00 0.00 5.18
3624 4145 1.671979 ACATGGTGAATCAGATGCCG 58.328 50.000 0.00 0.00 0.00 5.69
3721 4257 3.129462 CGCAGTCTATCTCTTTCACTCCA 59.871 47.826 0.00 0.00 0.00 3.86
3786 4322 7.325660 TCTCGACACGGTCTAATAATAACTT 57.674 36.000 0.00 0.00 0.00 2.66
3788 4324 9.669353 TTAATCTCGACACGGTCTAATAATAAC 57.331 33.333 0.00 0.00 0.00 1.89
3800 4336 6.822073 TTGACATAATTAATCTCGACACGG 57.178 37.500 0.00 0.00 0.00 4.94
3802 4338 8.491152 CCTCATTGACATAATTAATCTCGACAC 58.509 37.037 0.00 0.00 0.00 3.67
3935 4479 5.508200 AACCTCAGTTTTTCGCACAAATA 57.492 34.783 0.00 0.00 29.61 1.40
3973 4517 7.218314 ACAAATTTAGGGATGAGGAAGATCT 57.782 36.000 0.00 0.00 0.00 2.75
3984 4528 7.309990 CCTGTGTGATGAAACAAATTTAGGGAT 60.310 37.037 0.00 0.00 0.00 3.85
3995 4541 3.117851 TGTTACCCCTGTGTGATGAAACA 60.118 43.478 0.00 0.00 0.00 2.83
4001 4547 2.038557 GAGTGTGTTACCCCTGTGTGAT 59.961 50.000 0.00 0.00 0.00 3.06
4028 4574 3.691342 CGGGAGCGACACAAGGGA 61.691 66.667 0.00 0.00 0.00 4.20
4063 4616 1.339631 ACCCGAGATTCGCCAAAATCA 60.340 47.619 4.52 0.00 38.82 2.57
4073 4626 0.757512 GAACCCCCTACCCGAGATTC 59.242 60.000 0.00 0.00 0.00 2.52
4091 4644 1.835494 ACTTACACTAGCAGCTCGGA 58.165 50.000 0.00 0.00 0.00 4.55
4104 4657 6.207221 TGTCTCTTGTTACCATCGTACTTACA 59.793 38.462 0.00 0.00 0.00 2.41
4105 4658 6.525976 GTGTCTCTTGTTACCATCGTACTTAC 59.474 42.308 0.00 0.00 0.00 2.34
4129 4682 5.241728 GCCTGAATCTGAGTAAAAACCTTGT 59.758 40.000 0.00 0.00 0.00 3.16
4142 4695 3.840666 ACTTTGAGGTAGCCTGAATCTGA 59.159 43.478 0.00 0.00 31.76 3.27
4150 4703 5.071923 GGGTATTATCACTTTGAGGTAGCCT 59.928 44.000 0.00 0.00 36.03 4.58
4155 4708 5.659971 ACGTAGGGTATTATCACTTTGAGGT 59.340 40.000 0.00 0.00 0.00 3.85
4164 4717 5.801531 ATGCAGAACGTAGGGTATTATCA 57.198 39.130 0.00 0.00 0.00 2.15
4193 4747 7.092891 ACTCTGTACTCCATCCACAATCAATAA 60.093 37.037 0.00 0.00 0.00 1.40
4216 4770 6.278363 TCTTGTGGTAGAAACACTTGTACTC 58.722 40.000 0.00 0.00 39.52 2.59
4223 4777 6.365970 AGATGATCTTGTGGTAGAAACACT 57.634 37.500 0.00 0.00 39.52 3.55
4237 4791 4.219507 CACGTAGAGGCCATAGATGATCTT 59.780 45.833 5.01 0.00 0.00 2.40
4242 4796 1.337260 GGCACGTAGAGGCCATAGATG 60.337 57.143 5.01 0.00 46.97 2.90
4243 4797 0.969894 GGCACGTAGAGGCCATAGAT 59.030 55.000 5.01 0.00 46.97 1.98
4270 4824 8.287350 AGACCTCTAGACACCTATATAAACCAA 58.713 37.037 0.00 0.00 0.00 3.67
4285 4839 5.370875 TCTGTAACCCTAGACCTCTAGAC 57.629 47.826 10.45 2.38 46.80 2.59
4286 4840 7.295196 ACATATCTGTAACCCTAGACCTCTAGA 59.705 40.741 10.45 0.00 40.09 2.43
4289 4843 6.282568 ACATATCTGTAACCCTAGACCTCT 57.717 41.667 0.00 0.00 32.49 3.69
4291 4845 5.071370 CGACATATCTGTAACCCTAGACCT 58.929 45.833 0.00 0.00 35.14 3.85
4313 4867 5.175126 CCATGATCTACTAAAAACGTAGCCG 59.825 44.000 0.00 0.00 35.47 5.52
4334 4888 5.946942 AGATCAGAAGTCATGTACACCAT 57.053 39.130 0.00 0.00 0.00 3.55
4344 4898 1.404717 GCGCTCCAAGATCAGAAGTCA 60.405 52.381 0.00 0.00 0.00 3.41
4376 4930 1.768870 CACCCATAAGAGGATTCCCGT 59.231 52.381 0.00 0.00 37.58 5.28
4394 4969 1.084289 GGTTCACTAATGGGTCGCAC 58.916 55.000 0.00 0.00 0.00 5.34
4399 4974 2.291540 CCATGGTGGTTCACTAATGGGT 60.292 50.000 2.57 0.00 40.91 4.51
4435 5010 2.125912 ATCTCCTGGCCAGTGGGT 59.874 61.111 30.63 16.33 36.17 4.51
4445 5020 1.226802 CTCACCGCGTCATCTCCTG 60.227 63.158 4.92 0.00 0.00 3.86
4446 5021 0.393944 TACTCACCGCGTCATCTCCT 60.394 55.000 4.92 0.00 0.00 3.69
4457 5032 1.771565 TGGACTATGGGTACTCACCG 58.228 55.000 0.00 0.00 46.86 4.94
4469 5045 3.181329 TGGTGATGGTGTCTTGGACTAT 58.819 45.455 0.00 0.00 33.15 2.12
4490 5066 0.546598 GTGCTAGGTAATGTGCCCCT 59.453 55.000 0.00 0.00 0.00 4.79
4496 5072 3.135895 GGTATGGTGGTGCTAGGTAATGT 59.864 47.826 0.00 0.00 0.00 2.71
4500 5076 2.112998 GTGGTATGGTGGTGCTAGGTA 58.887 52.381 0.00 0.00 0.00 3.08
4501 5077 0.909623 GTGGTATGGTGGTGCTAGGT 59.090 55.000 0.00 0.00 0.00 3.08
4507 5083 0.914417 AGGAGGGTGGTATGGTGGTG 60.914 60.000 0.00 0.00 0.00 4.17
4508 5084 0.620700 GAGGAGGGTGGTATGGTGGT 60.621 60.000 0.00 0.00 0.00 4.16
4511 5087 0.326618 CCAGAGGAGGGTGGTATGGT 60.327 60.000 0.00 0.00 0.00 3.55
4515 5091 2.040606 GGCCAGAGGAGGGTGGTA 59.959 66.667 0.00 0.00 36.10 3.25
4535 5111 1.814169 GGGACATCGGCGAAAGGAC 60.814 63.158 15.93 7.08 0.00 3.85
4552 5128 2.516888 CCGGGGTACATAGGCAGGG 61.517 68.421 0.00 0.00 0.00 4.45
4597 5173 2.438434 GAACATCCCCAGCCACGG 60.438 66.667 0.00 0.00 0.00 4.94
4598 5174 2.819595 CGAACATCCCCAGCCACG 60.820 66.667 0.00 0.00 0.00 4.94
4647 5223 0.323816 AGCCGATGAGGTCTCAGACA 60.324 55.000 7.24 0.00 43.61 3.41
4649 5225 0.820226 CAAGCCGATGAGGTCTCAGA 59.180 55.000 6.81 0.00 43.61 3.27
4651 5227 1.617018 CCCAAGCCGATGAGGTCTCA 61.617 60.000 2.93 2.93 44.59 3.27
4675 5251 2.933287 ATGAGGTCGCCACCCCAA 60.933 61.111 0.00 0.00 45.12 4.12
4677 5253 2.270874 AATGATGAGGTCGCCACCCC 62.271 60.000 0.00 0.00 45.12 4.95
4694 5270 0.905357 CACCACGAGGAGAAGGGAAT 59.095 55.000 5.68 0.00 38.69 3.01
4738 5314 1.211949 GCACAAGGCCCCAATCTAGTA 59.788 52.381 0.00 0.00 36.11 1.82
4740 5316 2.799176 GCACAAGGCCCCAATCTAG 58.201 57.895 0.00 0.00 36.11 2.43
4770 5346 4.758251 CGGTGATGGCCTGCGACA 62.758 66.667 3.32 0.00 0.00 4.35
4776 5352 1.603455 CAAACCACGGTGATGGCCT 60.603 57.895 10.28 0.00 44.33 5.19
4790 5366 1.467342 GCAACCATAGACCCGTCAAAC 59.533 52.381 0.00 0.00 0.00 2.93
4792 5368 0.390603 CGCAACCATAGACCCGTCAA 60.391 55.000 0.00 0.00 0.00 3.18
4793 5369 1.216977 CGCAACCATAGACCCGTCA 59.783 57.895 0.00 0.00 0.00 4.35
4795 5371 2.125269 GCGCAACCATAGACCCGT 60.125 61.111 0.30 0.00 0.00 5.28
4808 5384 2.359107 CAGAGAAAGGCCAGCGCA 60.359 61.111 11.47 0.00 36.38 6.09
4818 5394 1.522668 CCAACCATGCGACAGAGAAA 58.477 50.000 0.00 0.00 0.00 2.52
4830 5406 3.650950 AGTCGCCCTGCCAACCAT 61.651 61.111 0.00 0.00 0.00 3.55
4831 5407 4.641645 CAGTCGCCCTGCCAACCA 62.642 66.667 0.00 0.00 33.59 3.67
4840 5416 2.268076 AAACACCATGCAGTCGCCC 61.268 57.895 0.00 0.00 37.32 6.13
4850 5426 2.945984 CACGCGAGCAAACACCAT 59.054 55.556 15.93 0.00 0.00 3.55
4866 5442 0.187117 TGGATGAACCCAACCAAGCA 59.813 50.000 0.00 0.00 41.50 3.91
4868 5444 1.205417 GCATGGATGAACCCAACCAAG 59.795 52.381 0.00 0.00 46.32 3.61
4883 5459 2.492773 GGGCCCAAATCGAGCATGG 61.493 63.158 19.95 6.88 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.