Multiple sequence alignment - TraesCS3B01G610400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G610400 chr3B 100.000 3333 0 0 1 3333 829015476 829012144 0.000000e+00 6156.0
1 TraesCS3B01G610400 chr3B 80.042 942 155 25 1385 2306 828918425 828917497 0.000000e+00 667.0
2 TraesCS3B01G610400 chr3B 79.155 734 122 23 1348 2073 829039290 829040000 2.330000e-131 479.0
3 TraesCS3B01G610400 chr3B 83.502 297 42 5 924 1215 828919019 828918725 1.520000e-68 270.0
4 TraesCS3B01G610400 chr3B 92.857 84 5 1 3033 3115 654643983 654643900 1.620000e-23 121.0
5 TraesCS3B01G610400 chr3B 90.141 71 7 0 3046 3116 463125241 463125171 3.540000e-15 93.5
6 TraesCS3B01G610400 chr3D 93.362 1175 52 11 1346 2517 611252737 611251586 0.000000e+00 1714.0
7 TraesCS3B01G610400 chr3D 90.554 1281 62 19 2 1232 611254101 611252830 0.000000e+00 1640.0
8 TraesCS3B01G610400 chr3D 80.277 938 152 27 1384 2306 611164044 611163125 0.000000e+00 676.0
9 TraesCS3B01G610400 chr3D 77.940 961 176 29 1337 2277 611297316 611298260 4.830000e-158 568.0
10 TraesCS3B01G610400 chr3D 82.390 318 50 4 920 1232 611164469 611164153 4.240000e-69 272.0
11 TraesCS3B01G610400 chr3D 74.024 743 137 32 1341 2073 611217228 611216532 5.520000e-63 252.0
12 TraesCS3B01G610400 chr3D 80.620 258 40 4 618 872 611296446 611296696 1.220000e-44 191.0
13 TraesCS3B01G610400 chr3D 96.875 64 2 0 1231 1294 611252800 611252737 1.260000e-19 108.0
14 TraesCS3B01G610400 chr3A 93.705 1112 49 10 1240 2346 746175668 746174573 0.000000e+00 1646.0
15 TraesCS3B01G610400 chr3A 90.244 1271 75 26 1 1232 746176967 746175707 0.000000e+00 1615.0
16 TraesCS3B01G610400 chr3A 80.363 937 150 27 1385 2306 746088220 746087303 0.000000e+00 680.0
17 TraesCS3B01G610400 chr3A 87.709 358 42 2 2375 2730 746174572 746174215 1.850000e-112 416.0
18 TraesCS3B01G610400 chr3A 89.286 308 25 7 2663 2962 746174116 746173809 2.430000e-101 379.0
19 TraesCS3B01G610400 chr3A 83.019 318 48 4 920 1232 746088741 746088425 1.960000e-72 283.0
20 TraesCS3B01G610400 chr3A 80.859 256 41 4 618 872 746187170 746187418 9.440000e-46 195.0
21 TraesCS3B01G610400 chr3A 94.186 86 3 2 3192 3277 746173600 746173517 2.700000e-26 130.0
22 TraesCS3B01G610400 chr3A 87.654 81 8 2 3045 3124 504733720 504733641 3.540000e-15 93.5
23 TraesCS3B01G610400 chr3A 94.286 35 1 1 2993 3027 208216218 208216251 6.000000e-03 52.8
24 TraesCS3B01G610400 chr2B 97.222 72 2 0 3045 3116 448287899 448287828 4.520000e-24 122.0
25 TraesCS3B01G610400 chr2B 95.775 71 3 0 3046 3116 499552908 499552838 7.560000e-22 115.0
26 TraesCS3B01G610400 chr2B 95.714 70 3 0 3046 3115 612680121 612680052 2.720000e-21 113.0
27 TraesCS3B01G610400 chr2A 94.872 78 4 0 3045 3122 675853438 675853515 4.520000e-24 122.0
28 TraesCS3B01G610400 chr2A 92.857 70 5 0 3046 3115 631961802 631961733 5.880000e-18 102.0
29 TraesCS3B01G610400 chr2A 94.737 38 1 1 2983 3019 656839459 656839496 1.290000e-04 58.4
30 TraesCS3B01G610400 chrUn 97.183 71 2 0 3046 3116 218382172 218382242 1.620000e-23 121.0
31 TraesCS3B01G610400 chrUn 97.183 71 2 0 3046 3116 218399720 218399790 1.620000e-23 121.0
32 TraesCS3B01G610400 chr5B 95.946 74 2 1 3046 3119 259586134 259586062 5.840000e-23 119.0
33 TraesCS3B01G610400 chr5B 95.714 70 3 0 3046 3115 547062991 547063060 2.720000e-21 113.0
34 TraesCS3B01G610400 chr5B 85.714 84 10 2 3045 3127 707886574 707886656 1.650000e-13 87.9
35 TraesCS3B01G610400 chr5A 97.143 70 2 0 3046 3115 698229274 698229343 5.840000e-23 119.0
36 TraesCS3B01G610400 chr5A 91.549 71 6 0 3046 3116 590099862 590099932 7.610000e-17 99.0
37 TraesCS3B01G610400 chr5A 97.143 35 0 1 2985 3019 18943624 18943657 1.290000e-04 58.4
38 TraesCS3B01G610400 chr4D 90.000 90 9 0 2633 2722 473136058 473136147 2.100000e-22 117.0
39 TraesCS3B01G610400 chr4D 89.130 92 10 0 2633 2724 113155998 113155907 7.560000e-22 115.0
40 TraesCS3B01G610400 chr4D 88.235 51 2 4 2987 3036 497153775 497153728 1.290000e-04 58.4
41 TraesCS3B01G610400 chr7B 91.765 85 4 3 3045 3127 377054038 377053955 7.560000e-22 115.0
42 TraesCS3B01G610400 chr7B 91.463 82 6 1 3046 3127 558213041 558212961 9.770000e-21 111.0
43 TraesCS3B01G610400 chr7B 92.857 70 5 0 3046 3115 86007833 86007902 5.880000e-18 102.0
44 TraesCS3B01G610400 chr7B 83.333 90 12 3 2638 2725 552006403 552006491 2.760000e-11 80.5
45 TraesCS3B01G610400 chr4A 88.764 89 10 0 2633 2721 464564333 464564421 3.520000e-20 110.0
46 TraesCS3B01G610400 chr4A 83.871 93 15 0 2633 2725 594032415 594032507 4.580000e-14 89.8
47 TraesCS3B01G610400 chr4B 87.234 94 12 0 2633 2726 595473494 595473587 1.260000e-19 108.0
48 TraesCS3B01G610400 chr4B 83.505 97 16 0 2633 2729 17496341 17496245 1.270000e-14 91.6
49 TraesCS3B01G610400 chr4B 87.931 58 2 5 2981 3036 75780936 75780990 2.780000e-06 63.9
50 TraesCS3B01G610400 chr1B 90.000 80 7 1 3046 3124 57763084 57763005 5.880000e-18 102.0
51 TraesCS3B01G610400 chr1B 86.747 83 8 3 3045 3126 686862699 686862779 4.580000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G610400 chr3B 829012144 829015476 3332 True 6156.0 6156 100.0000 1 3333 1 chr3B.!!$R3 3332
1 TraesCS3B01G610400 chr3B 829039290 829040000 710 False 479.0 479 79.1550 1348 2073 1 chr3B.!!$F1 725
2 TraesCS3B01G610400 chr3B 828917497 828919019 1522 True 468.5 667 81.7720 924 2306 2 chr3B.!!$R4 1382
3 TraesCS3B01G610400 chr3D 611251586 611254101 2515 True 1154.0 1714 93.5970 2 2517 3 chr3D.!!$R3 2515
4 TraesCS3B01G610400 chr3D 611163125 611164469 1344 True 474.0 676 81.3335 920 2306 2 chr3D.!!$R2 1386
5 TraesCS3B01G610400 chr3D 611296446 611298260 1814 False 379.5 568 79.2800 618 2277 2 chr3D.!!$F1 1659
6 TraesCS3B01G610400 chr3D 611216532 611217228 696 True 252.0 252 74.0240 1341 2073 1 chr3D.!!$R1 732
7 TraesCS3B01G610400 chr3A 746173517 746176967 3450 True 837.2 1646 91.0260 1 3277 5 chr3A.!!$R3 3276
8 TraesCS3B01G610400 chr3A 746087303 746088741 1438 True 481.5 680 81.6910 920 2306 2 chr3A.!!$R2 1386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 309 0.035152 CAAGCACATGCCTCCCTGTA 60.035 55.0 0.0 0.0 43.38 2.74 F
2058 2337 0.037590 CATTCACCAACCTCCCCGAA 59.962 55.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2481 0.035725 TCTGCAATGGTCTGCTCCAG 60.036 55.0 0.00 0.0 43.07 3.86 R
3261 3901 0.804544 CGTCGCCGGCAAGAGAAATA 60.805 55.0 28.98 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 1.881324 GGCTCGTCCATCTAGAGGTAC 59.119 57.143 3.36 0.00 32.96 3.34
111 112 1.881324 GCTCGTCCATCTAGAGGTACC 59.119 57.143 2.73 2.73 32.96 3.34
128 129 1.713297 ACCTACCGTACCATCCATCC 58.287 55.000 0.00 0.00 0.00 3.51
139 140 6.183360 CCGTACCATCCATCCATTATGCTATA 60.183 42.308 0.00 0.00 33.92 1.31
184 189 6.664816 TCCATTTTCATGAGTTAGGCAAATCT 59.335 34.615 0.00 0.00 31.07 2.40
206 211 5.830991 TCTAATTAGCCGCCACCAAAAATAT 59.169 36.000 7.67 0.00 0.00 1.28
207 212 6.999272 TCTAATTAGCCGCCACCAAAAATATA 59.001 34.615 7.67 0.00 0.00 0.86
208 213 5.705609 ATTAGCCGCCACCAAAAATATAG 57.294 39.130 0.00 0.00 0.00 1.31
250 255 7.048629 TCATAACCAAAATCTGCTTTGACAA 57.951 32.000 0.00 0.00 38.35 3.18
303 309 0.035152 CAAGCACATGCCTCCCTGTA 60.035 55.000 0.00 0.00 43.38 2.74
340 346 7.696992 TTTCTATCAAAAAGGCGGTCTTTAT 57.303 32.000 8.18 1.21 44.30 1.40
405 417 4.970711 ACATTCATGCATGTTTTCCCAAA 58.029 34.783 25.43 10.76 33.29 3.28
519 531 4.043168 CCGATACGGTTCATGGGC 57.957 61.111 1.80 0.00 42.73 5.36
562 574 4.353777 TCAGCTACAGAATCCTGGTAACT 58.646 43.478 0.00 0.00 44.60 2.24
565 577 5.127194 CAGCTACAGAATCCTGGTAACTACA 59.873 44.000 0.00 0.00 44.60 2.74
568 580 6.127423 GCTACAGAATCCTGGTAACTACAGAA 60.127 42.308 0.00 0.00 44.60 3.02
569 581 6.875972 ACAGAATCCTGGTAACTACAGAAT 57.124 37.500 0.00 0.00 44.60 2.40
574 586 3.952323 TCCTGGTAACTACAGAATCCTCG 59.048 47.826 0.00 0.00 38.20 4.63
575 587 3.068307 CCTGGTAACTACAGAATCCTCGG 59.932 52.174 0.00 0.00 38.20 4.63
578 590 4.081862 TGGTAACTACAGAATCCTCGGTTG 60.082 45.833 0.00 0.00 31.90 3.77
585 606 1.616628 AATCCTCGGTTGGCCTCCT 60.617 57.895 3.32 0.00 0.00 3.69
753 776 3.949842 TCTGAACCTCTGTCTGATGTG 57.050 47.619 0.00 0.00 0.00 3.21
755 778 4.407365 TCTGAACCTCTGTCTGATGTGTA 58.593 43.478 0.00 0.00 0.00 2.90
814 840 4.402056 ACTTATGTAGGATGGAACCACG 57.598 45.455 0.00 0.00 0.00 4.94
840 866 8.030106 GCTATACTTTAGAGGATTGCGTATCTT 58.970 37.037 0.00 0.00 35.71 2.40
849 875 2.900122 TTGCGTATCTTTGAAGCAGC 57.100 45.000 0.00 0.00 39.11 5.25
917 968 1.376609 AAGCTTAGCGGCGGAAATGG 61.377 55.000 9.78 0.00 37.29 3.16
918 969 2.834618 GCTTAGCGGCGGAAATGGG 61.835 63.158 9.78 0.00 0.00 4.00
1076 1167 4.156739 GCTGGGTTTTTCCTTGATGAGTAG 59.843 45.833 0.00 0.00 36.25 2.57
1131 1251 4.425180 TGCACCTGAACTAAAGTACCAA 57.575 40.909 0.00 0.00 0.00 3.67
1132 1253 4.131596 TGCACCTGAACTAAAGTACCAAC 58.868 43.478 0.00 0.00 0.00 3.77
1181 1302 2.959465 AAAGGTCCCTTTGGTCTCTG 57.041 50.000 10.47 0.00 43.72 3.35
1236 1391 4.676924 CGAACATTCTTGAAACTTTCTGGC 59.323 41.667 3.22 0.00 0.00 4.85
1238 1393 3.004734 ACATTCTTGAAACTTTCTGGCCG 59.995 43.478 0.00 0.00 0.00 6.13
1376 1632 7.852945 GGTACGAAATGCTATTGAGATCTTTTG 59.147 37.037 0.00 0.00 0.00 2.44
1465 1729 1.439679 GAGCCAACCGAGGTAGTTTG 58.560 55.000 0.00 0.00 0.00 2.93
1556 1823 6.317391 AGCTGAAATAATGTTTCTCCTAGTGC 59.683 38.462 4.22 0.00 0.00 4.40
1757 2033 4.259356 CTGATTCATCTGCTCCTGACAAA 58.741 43.478 0.00 0.00 0.00 2.83
1850 2128 6.460261 GGCTTAGCCTGTTAATCCATTTCTTC 60.460 42.308 17.16 0.00 46.69 2.87
1877 2155 1.144708 TCCCACCTTCAGCACAAATGA 59.855 47.619 0.00 0.00 0.00 2.57
1928 2207 4.920640 TGTTCTTCTCCATCGATAGGAC 57.079 45.455 11.18 4.88 0.00 3.85
2058 2337 0.037590 CATTCACCAACCTCCCCGAA 59.962 55.000 0.00 0.00 0.00 4.30
2082 2361 5.246883 AGCTTGAAAATAAGGCATGGAGTTT 59.753 36.000 0.00 0.00 0.00 2.66
2177 2481 7.202016 TGATATATTTTGGTCGCCATCTTTC 57.798 36.000 0.00 0.00 31.53 2.62
2236 2540 2.273776 GGAAGGAGCCAAGGAGCC 59.726 66.667 0.00 0.00 0.00 4.70
2343 2647 7.125113 GTCGAGATCTACTAAGTAAAGGTTCG 58.875 42.308 0.00 0.00 0.00 3.95
2346 2650 7.224362 CGAGATCTACTAAGTAAAGGTTCGAGA 59.776 40.741 0.00 0.00 0.00 4.04
2347 2651 8.804912 AGATCTACTAAGTAAAGGTTCGAGAA 57.195 34.615 0.00 0.00 0.00 2.87
2348 2652 9.240734 AGATCTACTAAGTAAAGGTTCGAGAAA 57.759 33.333 0.00 0.00 0.00 2.52
2349 2653 9.852091 GATCTACTAAGTAAAGGTTCGAGAAAA 57.148 33.333 0.00 0.00 0.00 2.29
2350 2654 9.857957 ATCTACTAAGTAAAGGTTCGAGAAAAG 57.142 33.333 0.00 0.00 0.00 2.27
2351 2655 8.302438 TCTACTAAGTAAAGGTTCGAGAAAAGG 58.698 37.037 0.00 0.00 0.00 3.11
2352 2656 6.228995 ACTAAGTAAAGGTTCGAGAAAAGGG 58.771 40.000 0.00 0.00 0.00 3.95
2353 2657 4.017177 AGTAAAGGTTCGAGAAAAGGGG 57.983 45.455 0.00 0.00 0.00 4.79
2354 2658 3.649502 AGTAAAGGTTCGAGAAAAGGGGA 59.350 43.478 0.00 0.00 0.00 4.81
2355 2659 2.861147 AAGGTTCGAGAAAAGGGGAG 57.139 50.000 0.00 0.00 0.00 4.30
2356 2660 0.984995 AGGTTCGAGAAAAGGGGAGG 59.015 55.000 0.00 0.00 0.00 4.30
2357 2661 0.035343 GGTTCGAGAAAAGGGGAGGG 60.035 60.000 0.00 0.00 0.00 4.30
2391 2695 6.294899 GCAATCATCATATTGTACTGGCCATT 60.295 38.462 5.51 2.21 38.78 3.16
2444 2748 9.428097 TGAAGACAATAATCATGAGGATATTCG 57.572 33.333 0.09 4.71 34.28 3.34
2450 2754 9.591792 CAATAATCATGAGGATATTCGAGCTAA 57.408 33.333 0.09 0.00 34.28 3.09
2487 2791 1.136828 TGGCTACACCCTGTTTCAGT 58.863 50.000 0.00 0.00 37.83 3.41
2510 2814 3.709987 AGTTTTGCTGCTGACATTTGTC 58.290 40.909 0.00 3.72 44.97 3.18
2525 2829 6.506500 ACATTTGTCATGACTTTGATCTCC 57.493 37.500 25.55 0.00 0.00 3.71
2527 2831 3.634397 TGTCATGACTTTGATCTCCCC 57.366 47.619 25.55 0.00 0.00 4.81
2536 2840 6.713276 TGACTTTGATCTCCCCGTTATTAAA 58.287 36.000 0.00 0.00 0.00 1.52
2540 2844 7.715686 ACTTTGATCTCCCCGTTATTAAAGATC 59.284 37.037 0.00 7.61 39.56 2.75
2552 2856 7.361713 CCGTTATTAAAGATCAAGGTCTGCAAA 60.362 37.037 0.00 0.00 0.00 3.68
2557 2861 3.005554 AGATCAAGGTCTGCAAATGACG 58.994 45.455 0.00 0.00 35.45 4.35
2558 2862 1.522668 TCAAGGTCTGCAAATGACGG 58.477 50.000 0.00 0.00 35.45 4.79
2567 2871 2.037053 CAAATGACGGTGCACCCAA 58.963 52.632 29.95 15.88 0.00 4.12
2577 2881 2.547642 CGGTGCACCCAATGAAAATGTT 60.548 45.455 29.95 0.00 0.00 2.71
2600 2904 8.306038 TGTTCATTGAATGAGGATTAAAACTGG 58.694 33.333 8.01 0.00 40.94 4.00
2635 2940 1.332144 AAGCGCCAAATGATGCCCAT 61.332 50.000 2.29 0.00 36.99 4.00
2638 2943 0.528901 CGCCAAATGATGCCCATGTG 60.529 55.000 0.00 0.65 39.67 3.21
2639 2944 0.812412 GCCAAATGATGCCCATGTGC 60.812 55.000 0.00 0.00 38.83 4.57
2641 2946 0.537653 CAAATGATGCCCATGTGCCA 59.462 50.000 0.00 0.00 34.01 4.92
2642 2947 1.140052 CAAATGATGCCCATGTGCCAT 59.860 47.619 0.00 0.00 34.01 4.40
2643 2948 2.365941 CAAATGATGCCCATGTGCCATA 59.634 45.455 0.00 0.00 34.01 2.74
2645 2950 1.401761 TGATGCCCATGTGCCATAAC 58.598 50.000 0.00 0.00 0.00 1.89
2646 2951 1.063792 TGATGCCCATGTGCCATAACT 60.064 47.619 0.00 0.00 0.00 2.24
2655 2961 4.276678 CCATGTGCCATAACTATGACTTGG 59.723 45.833 0.00 4.38 35.75 3.61
2666 2972 5.923733 ACTATGACTTGGTTTCGAGATCT 57.076 39.130 0.00 0.00 0.00 2.75
2670 2976 9.132923 ACTATGACTTGGTTTCGAGATCTTATA 57.867 33.333 0.00 0.00 0.00 0.98
2686 2992 7.958088 AGATCTTATAGGTTTCAACTCTAGCC 58.042 38.462 0.00 0.00 0.00 3.93
2722 3028 3.620488 TGAGACTCAAAGGCTTTGTTGT 58.380 40.909 32.46 29.62 41.36 3.32
2729 3203 6.273071 ACTCAAAGGCTTTGTTGTTGTATTC 58.727 36.000 32.46 0.00 41.36 1.75
2751 3225 4.155280 TCATAGTTAAAGCTTCAAACCGGC 59.845 41.667 16.82 0.00 0.00 6.13
2759 3233 0.523072 CTTCAAACCGGCATGTGGAG 59.477 55.000 0.00 0.00 0.00 3.86
2764 3238 1.234615 AACCGGCATGTGGAGTTTCG 61.235 55.000 0.00 0.00 0.00 3.46
2796 3270 5.220989 GGAGCGGAGTTGTTTTTCTTAGTTT 60.221 40.000 0.00 0.00 0.00 2.66
2803 3277 9.297586 GGAGTTGTTTTTCTTAGTTTACCAAAG 57.702 33.333 0.00 0.00 0.00 2.77
2806 3280 6.575267 TGTTTTTCTTAGTTTACCAAAGGCC 58.425 36.000 0.00 0.00 0.00 5.19
2828 3302 6.035843 GCCGCTTCAAATTTCAATTCATAGA 58.964 36.000 0.00 0.00 0.00 1.98
2829 3303 6.698766 GCCGCTTCAAATTTCAATTCATAGAT 59.301 34.615 0.00 0.00 0.00 1.98
2842 3316 5.794687 ATTCATAGATAGCTCTCGTCTCG 57.205 43.478 0.00 0.00 32.66 4.04
2866 3340 5.320277 AGAAACAGAAAGGAGAATTCCCTG 58.680 41.667 14.10 9.12 45.24 4.45
2867 3341 5.073691 AGAAACAGAAAGGAGAATTCCCTGA 59.926 40.000 14.10 0.00 45.24 3.86
2918 3395 7.066404 GGAGGGAAGAAAACAGAAGATATTGTC 59.934 40.741 0.00 0.00 0.00 3.18
2950 3427 6.910259 ACTCCTTTTAGAAATAGGGATGGT 57.090 37.500 0.00 0.00 0.00 3.55
2952 3429 5.445964 TCCTTTTAGAAATAGGGATGGTGC 58.554 41.667 0.00 0.00 0.00 5.01
2953 3430 5.193728 TCCTTTTAGAAATAGGGATGGTGCT 59.806 40.000 0.00 0.00 0.00 4.40
2954 3431 6.388689 TCCTTTTAGAAATAGGGATGGTGCTA 59.611 38.462 0.00 0.00 0.00 3.49
2955 3432 7.073725 TCCTTTTAGAAATAGGGATGGTGCTAT 59.926 37.037 0.00 0.00 0.00 2.97
2956 3433 7.391833 CCTTTTAGAAATAGGGATGGTGCTATC 59.608 40.741 0.00 0.00 0.00 2.08
2957 3434 4.917906 AGAAATAGGGATGGTGCTATCC 57.082 45.455 6.08 6.08 44.82 2.59
2958 3435 3.261897 AGAAATAGGGATGGTGCTATCCG 59.738 47.826 8.20 0.00 46.19 4.18
2959 3436 2.327325 ATAGGGATGGTGCTATCCGT 57.673 50.000 12.94 12.94 46.19 4.69
2960 3437 1.629043 TAGGGATGGTGCTATCCGTC 58.371 55.000 11.98 9.27 46.19 4.79
2961 3438 0.105453 AGGGATGGTGCTATCCGTCT 60.105 55.000 8.20 0.00 46.19 4.18
2962 3439 0.034059 GGGATGGTGCTATCCGTCTG 59.966 60.000 8.20 0.00 46.19 3.51
2963 3440 0.034059 GGATGGTGCTATCCGTCTGG 59.966 60.000 12.46 0.00 41.68 3.86
2964 3441 0.753262 GATGGTGCTATCCGTCTGGT 59.247 55.000 7.69 0.00 39.61 4.00
2965 3442 1.961394 GATGGTGCTATCCGTCTGGTA 59.039 52.381 7.69 0.00 39.61 3.25
2966 3443 2.082140 TGGTGCTATCCGTCTGGTAT 57.918 50.000 0.00 0.00 36.30 2.73
2967 3444 3.232720 TGGTGCTATCCGTCTGGTATA 57.767 47.619 0.00 0.00 36.30 1.47
2968 3445 3.774734 TGGTGCTATCCGTCTGGTATAT 58.225 45.455 0.00 0.00 36.30 0.86
2969 3446 4.925836 TGGTGCTATCCGTCTGGTATATA 58.074 43.478 0.00 0.00 36.30 0.86
2970 3447 5.516044 TGGTGCTATCCGTCTGGTATATAT 58.484 41.667 0.00 0.00 36.30 0.86
2982 3459 9.658799 CCGTCTGGTATATATGATCTTGAATTT 57.341 33.333 0.00 0.00 0.00 1.82
3001 3478 9.502091 TTGAATTTTTGATATATACTCCCTCCG 57.498 33.333 0.00 0.00 0.00 4.63
3002 3479 8.656806 TGAATTTTTGATATATACTCCCTCCGT 58.343 33.333 0.00 0.00 0.00 4.69
3003 3480 9.503399 GAATTTTTGATATATACTCCCTCCGTT 57.497 33.333 0.00 0.00 0.00 4.44
3004 3481 9.862149 AATTTTTGATATATACTCCCTCCGTTT 57.138 29.630 0.00 0.00 0.00 3.60
3005 3482 8.897872 TTTTTGATATATACTCCCTCCGTTTC 57.102 34.615 0.00 0.00 0.00 2.78
3006 3483 5.892160 TGATATATACTCCCTCCGTTTCG 57.108 43.478 0.00 0.00 0.00 3.46
3007 3484 5.563592 TGATATATACTCCCTCCGTTTCGA 58.436 41.667 0.00 0.00 0.00 3.71
3008 3485 6.005823 TGATATATACTCCCTCCGTTTCGAA 58.994 40.000 0.00 0.00 0.00 3.71
3009 3486 6.662234 TGATATATACTCCCTCCGTTTCGAAT 59.338 38.462 0.00 0.00 0.00 3.34
3010 3487 5.803237 ATATACTCCCTCCGTTTCGAATT 57.197 39.130 0.00 0.00 0.00 2.17
3011 3488 6.906157 ATATACTCCCTCCGTTTCGAATTA 57.094 37.500 0.00 0.00 0.00 1.40
3012 3489 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3013 3490 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3014 3491 3.260128 ACTCCCTCCGTTTCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3015 3492 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3016 3493 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3017 3494 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
3018 3495 4.243270 CCTCCGTTTCGAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
3019 3496 4.326548 CCTCCGTTTCGAATTACTTGTCTC 59.673 45.833 0.00 0.00 0.00 3.36
3020 3497 4.873817 TCCGTTTCGAATTACTTGTCTCA 58.126 39.130 0.00 0.00 0.00 3.27
3021 3498 4.682860 TCCGTTTCGAATTACTTGTCTCAC 59.317 41.667 0.00 0.00 0.00 3.51
3022 3499 4.432503 CCGTTTCGAATTACTTGTCTCACG 60.433 45.833 0.00 0.90 0.00 4.35
3023 3500 4.380678 CGTTTCGAATTACTTGTCTCACGA 59.619 41.667 0.00 0.00 0.00 4.35
3024 3501 5.108141 CGTTTCGAATTACTTGTCTCACGAA 60.108 40.000 0.00 0.00 36.89 3.85
3025 3502 6.560799 CGTTTCGAATTACTTGTCTCACGAAA 60.561 38.462 0.00 0.00 42.88 3.46
3026 3503 7.288672 GTTTCGAATTACTTGTCTCACGAAAT 58.711 34.615 0.00 0.00 45.19 2.17
3027 3504 6.389622 TCGAATTACTTGTCTCACGAAATG 57.610 37.500 0.00 0.00 0.00 2.32
3028 3505 5.347635 TCGAATTACTTGTCTCACGAAATGG 59.652 40.000 0.00 0.00 0.00 3.16
3029 3506 5.120208 CGAATTACTTGTCTCACGAAATGGT 59.880 40.000 0.00 0.00 0.00 3.55
3030 3507 5.862924 ATTACTTGTCTCACGAAATGGTG 57.137 39.130 0.00 0.00 39.29 4.17
3031 3508 1.873591 ACTTGTCTCACGAAATGGTGC 59.126 47.619 0.00 0.00 37.83 5.01
3032 3509 2.146342 CTTGTCTCACGAAATGGTGCT 58.854 47.619 0.00 0.00 37.83 4.40
3033 3510 3.244078 ACTTGTCTCACGAAATGGTGCTA 60.244 43.478 0.00 0.00 37.83 3.49
3034 3511 3.610040 TGTCTCACGAAATGGTGCTAT 57.390 42.857 0.00 0.00 37.83 2.97
3035 3512 3.521560 TGTCTCACGAAATGGTGCTATC 58.478 45.455 0.00 0.00 37.83 2.08
3036 3513 2.866762 GTCTCACGAAATGGTGCTATCC 59.133 50.000 0.00 0.00 37.83 2.59
3037 3514 1.860950 CTCACGAAATGGTGCTATCCG 59.139 52.381 0.00 0.00 37.83 4.18
3038 3515 1.206132 TCACGAAATGGTGCTATCCGT 59.794 47.619 0.00 0.00 37.83 4.69
3039 3516 2.006888 CACGAAATGGTGCTATCCGTT 58.993 47.619 0.00 0.00 38.21 4.44
3040 3517 2.418628 CACGAAATGGTGCTATCCGTTT 59.581 45.455 11.15 11.15 45.74 3.60
3041 3518 3.619483 CACGAAATGGTGCTATCCGTTTA 59.381 43.478 11.26 0.00 43.91 2.01
3042 3519 3.869246 ACGAAATGGTGCTATCCGTTTAG 59.131 43.478 11.26 12.78 43.91 1.85
3043 3520 4.116961 CGAAATGGTGCTATCCGTTTAGA 58.883 43.478 11.26 0.00 43.91 2.10
3044 3521 4.569162 CGAAATGGTGCTATCCGTTTAGAA 59.431 41.667 11.26 0.00 43.91 2.10
3045 3522 5.064198 CGAAATGGTGCTATCCGTTTAGAAA 59.936 40.000 11.26 0.00 43.91 2.52
3046 3523 6.238374 CGAAATGGTGCTATCCGTTTAGAAAT 60.238 38.462 11.26 0.00 43.91 2.17
3047 3524 6.377327 AATGGTGCTATCCGTTTAGAAATG 57.623 37.500 0.00 0.00 33.45 2.32
3048 3525 4.839121 TGGTGCTATCCGTTTAGAAATGT 58.161 39.130 0.00 0.00 0.00 2.71
3049 3526 5.979993 TGGTGCTATCCGTTTAGAAATGTA 58.020 37.500 0.00 0.00 0.00 2.29
3050 3527 6.588204 TGGTGCTATCCGTTTAGAAATGTAT 58.412 36.000 0.00 0.00 0.00 2.29
3051 3528 6.704493 TGGTGCTATCCGTTTAGAAATGTATC 59.296 38.462 0.00 0.00 0.00 2.24
3052 3529 6.929606 GGTGCTATCCGTTTAGAAATGTATCT 59.070 38.462 0.00 0.00 0.00 1.98
3053 3530 8.086522 GGTGCTATCCGTTTAGAAATGTATCTA 58.913 37.037 0.00 0.00 0.00 1.98
3054 3531 9.130312 GTGCTATCCGTTTAGAAATGTATCTAG 57.870 37.037 0.00 0.00 33.64 2.43
3055 3532 9.074576 TGCTATCCGTTTAGAAATGTATCTAGA 57.925 33.333 0.00 0.00 33.64 2.43
3088 3565 9.639601 TTAGTTATAGATACATCCATTTCAGCG 57.360 33.333 0.00 0.00 0.00 5.18
3089 3566 7.896811 AGTTATAGATACATCCATTTCAGCGA 58.103 34.615 0.00 0.00 0.00 4.93
3090 3567 7.815068 AGTTATAGATACATCCATTTCAGCGAC 59.185 37.037 0.00 0.00 0.00 5.19
3091 3568 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
3092 3569 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
3093 3570 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
3094 3571 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
3095 3572 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
3096 3573 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
3097 3574 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
3098 3575 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
3099 3576 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
3100 3577 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
3101 3578 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
3102 3579 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
3103 3580 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
3104 3581 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
3105 3582 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
3106 3583 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
3107 3584 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
3108 3585 2.988493 CGACGAGTAATTTGGAACGGAA 59.012 45.455 0.00 0.00 0.00 4.30
3109 3586 3.060363 CGACGAGTAATTTGGAACGGAAG 59.940 47.826 0.00 0.00 0.00 3.46
3110 3587 3.332034 ACGAGTAATTTGGAACGGAAGG 58.668 45.455 0.00 0.00 0.00 3.46
3111 3588 3.007182 ACGAGTAATTTGGAACGGAAGGA 59.993 43.478 0.00 0.00 0.00 3.36
3112 3589 3.617263 CGAGTAATTTGGAACGGAAGGAG 59.383 47.826 0.00 0.00 0.00 3.69
3113 3590 4.576879 GAGTAATTTGGAACGGAAGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
3114 3591 5.622914 CGAGTAATTTGGAACGGAAGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
3133 3610 6.424176 GAGTATCCATCATGCAAGATCATG 57.576 41.667 0.43 0.00 43.84 3.07
3134 3611 4.700692 AGTATCCATCATGCAAGATCATGC 59.299 41.667 15.84 15.84 46.58 4.06
3148 3625 8.503486 GCAAGATCATGCAAGAATATTGTTAG 57.497 34.615 17.64 0.00 45.70 2.34
3149 3626 7.114529 GCAAGATCATGCAAGAATATTGTTAGC 59.885 37.037 17.64 5.41 45.70 3.09
3150 3627 8.350722 CAAGATCATGCAAGAATATTGTTAGCT 58.649 33.333 15.49 0.00 0.00 3.32
3151 3628 7.872881 AGATCATGCAAGAATATTGTTAGCTG 58.127 34.615 15.49 12.35 0.00 4.24
3152 3629 7.718314 AGATCATGCAAGAATATTGTTAGCTGA 59.282 33.333 15.49 15.25 0.00 4.26
3153 3630 7.019774 TCATGCAAGAATATTGTTAGCTGAC 57.980 36.000 15.49 0.78 0.00 3.51
3154 3631 5.469373 TGCAAGAATATTGTTAGCTGACG 57.531 39.130 15.49 0.00 0.00 4.35
3155 3632 5.175127 TGCAAGAATATTGTTAGCTGACGA 58.825 37.500 15.49 0.29 0.00 4.20
3156 3633 5.641636 TGCAAGAATATTGTTAGCTGACGAA 59.358 36.000 2.18 0.00 0.00 3.85
3157 3634 5.960105 GCAAGAATATTGTTAGCTGACGAAC 59.040 40.000 2.18 0.00 32.55 3.95
3158 3635 5.950965 AGAATATTGTTAGCTGACGAACG 57.049 39.130 2.18 0.00 34.45 3.95
3159 3636 5.408356 AGAATATTGTTAGCTGACGAACGT 58.592 37.500 2.18 0.00 34.45 3.99
3160 3637 5.867716 AGAATATTGTTAGCTGACGAACGTT 59.132 36.000 0.00 0.00 34.45 3.99
3161 3638 5.697848 ATATTGTTAGCTGACGAACGTTC 57.302 39.130 18.47 18.47 34.45 3.95
3162 3639 2.495409 TGTTAGCTGACGAACGTTCA 57.505 45.000 26.71 8.65 34.45 3.18
3163 3640 2.811855 TGTTAGCTGACGAACGTTCAA 58.188 42.857 26.71 9.71 34.45 2.69
3164 3641 2.792674 TGTTAGCTGACGAACGTTCAAG 59.207 45.455 26.71 20.17 34.45 3.02
3165 3642 3.047796 GTTAGCTGACGAACGTTCAAGA 58.952 45.455 26.71 9.21 0.00 3.02
3166 3643 2.218953 AGCTGACGAACGTTCAAGAA 57.781 45.000 26.71 9.09 0.00 2.52
3167 3644 2.546778 AGCTGACGAACGTTCAAGAAA 58.453 42.857 26.71 7.42 0.00 2.52
3168 3645 3.131396 AGCTGACGAACGTTCAAGAAAT 58.869 40.909 26.71 6.64 0.00 2.17
3169 3646 4.304110 AGCTGACGAACGTTCAAGAAATA 58.696 39.130 26.71 5.80 0.00 1.40
3170 3647 4.929808 AGCTGACGAACGTTCAAGAAATAT 59.070 37.500 26.71 3.87 0.00 1.28
3171 3648 5.408604 AGCTGACGAACGTTCAAGAAATATT 59.591 36.000 26.71 2.23 0.00 1.28
3172 3649 5.504755 GCTGACGAACGTTCAAGAAATATTG 59.495 40.000 26.71 9.63 0.00 1.90
3173 3650 6.533819 TGACGAACGTTCAAGAAATATTGT 57.466 33.333 26.71 12.66 0.00 2.71
3174 3651 6.950545 TGACGAACGTTCAAGAAATATTGTT 58.049 32.000 26.71 0.00 0.00 2.83
3178 3655 6.086241 CGAACGTTCAAGAAATATTGTTGTGG 59.914 38.462 26.71 1.30 35.60 4.17
3191 3668 3.275832 TTGTGGATCTCGACGCGCA 62.276 57.895 5.73 0.00 0.00 6.09
3196 3673 2.824489 ATCTCGACGCGCAGAGGA 60.824 61.111 24.71 15.08 35.34 3.71
3197 3674 2.975167 GATCTCGACGCGCAGAGGAC 62.975 65.000 24.71 17.07 35.34 3.85
3214 3854 2.347114 CACATGACCTGACCCGCA 59.653 61.111 0.00 0.00 0.00 5.69
3260 3900 2.722094 AGCAGCCGAAATCAAACCATA 58.278 42.857 0.00 0.00 0.00 2.74
3261 3901 3.290710 AGCAGCCGAAATCAAACCATAT 58.709 40.909 0.00 0.00 0.00 1.78
3262 3902 4.460263 AGCAGCCGAAATCAAACCATATA 58.540 39.130 0.00 0.00 0.00 0.86
3277 3917 2.416547 CCATATATTTCTCTTGCCGGCG 59.583 50.000 23.90 8.74 0.00 6.46
3278 3918 3.325870 CATATATTTCTCTTGCCGGCGA 58.674 45.455 23.90 20.69 0.00 5.54
3279 3919 1.583054 ATATTTCTCTTGCCGGCGAC 58.417 50.000 23.90 0.00 0.00 5.19
3311 3951 3.663176 GCAACAGCCGAGCAGCAA 61.663 61.111 0.00 0.00 34.23 3.91
3312 3952 2.986306 GCAACAGCCGAGCAGCAAT 61.986 57.895 0.00 0.00 34.23 3.56
3313 3953 1.647545 GCAACAGCCGAGCAGCAATA 61.648 55.000 0.00 0.00 34.23 1.90
3314 3954 1.019673 CAACAGCCGAGCAGCAATAT 58.980 50.000 0.00 0.00 34.23 1.28
3315 3955 1.402968 CAACAGCCGAGCAGCAATATT 59.597 47.619 0.00 0.00 34.23 1.28
3316 3956 1.755179 ACAGCCGAGCAGCAATATTT 58.245 45.000 0.00 0.00 34.23 1.40
3317 3957 2.094675 ACAGCCGAGCAGCAATATTTT 58.905 42.857 0.00 0.00 34.23 1.82
3318 3958 3.278574 ACAGCCGAGCAGCAATATTTTA 58.721 40.909 0.00 0.00 34.23 1.52
3319 3959 3.065371 ACAGCCGAGCAGCAATATTTTAC 59.935 43.478 0.00 0.00 34.23 2.01
3320 3960 3.065233 CAGCCGAGCAGCAATATTTTACA 59.935 43.478 0.00 0.00 34.23 2.41
3321 3961 3.313526 AGCCGAGCAGCAATATTTTACAG 59.686 43.478 0.00 0.00 34.23 2.74
3322 3962 3.548818 GCCGAGCAGCAATATTTTACAGG 60.549 47.826 0.00 0.00 0.00 4.00
3323 3963 3.003689 CCGAGCAGCAATATTTTACAGGG 59.996 47.826 0.00 0.00 0.00 4.45
3324 3964 3.876914 CGAGCAGCAATATTTTACAGGGA 59.123 43.478 0.00 0.00 0.00 4.20
3325 3965 4.335315 CGAGCAGCAATATTTTACAGGGAA 59.665 41.667 0.00 0.00 0.00 3.97
3326 3966 5.009010 CGAGCAGCAATATTTTACAGGGAAT 59.991 40.000 0.00 0.00 0.00 3.01
3327 3967 6.204688 CGAGCAGCAATATTTTACAGGGAATA 59.795 38.462 0.00 0.00 0.00 1.75
3328 3968 7.094634 CGAGCAGCAATATTTTACAGGGAATAT 60.095 37.037 0.00 0.00 31.54 1.28
3329 3969 7.889469 AGCAGCAATATTTTACAGGGAATATG 58.111 34.615 0.00 0.00 30.90 1.78
3330 3970 7.725397 AGCAGCAATATTTTACAGGGAATATGA 59.275 33.333 0.00 0.00 30.90 2.15
3331 3971 8.025445 GCAGCAATATTTTACAGGGAATATGAG 58.975 37.037 0.00 0.00 30.90 2.90
3332 3972 8.517878 CAGCAATATTTTACAGGGAATATGAGG 58.482 37.037 0.00 0.00 30.90 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.568007 GCACACTGAAACCAGACCAAATA 59.432 43.478 0.00 0.00 35.67 1.40
110 111 1.712056 TGGATGGATGGTACGGTAGG 58.288 55.000 0.00 0.00 0.00 3.18
111 112 5.419542 CATAATGGATGGATGGTACGGTAG 58.580 45.833 0.00 0.00 31.20 3.18
184 189 6.773685 ACTATATTTTTGGTGGCGGCTAATTA 59.226 34.615 11.43 0.00 0.00 1.40
250 255 0.335361 TAGGAGCCGGGTCTCTCTTT 59.665 55.000 31.09 13.38 33.70 2.52
331 337 4.935808 AGTCCACTTGCTAAATAAAGACCG 59.064 41.667 0.00 0.00 0.00 4.79
340 346 2.158682 TGCCTTGAGTCCACTTGCTAAA 60.159 45.455 0.00 0.00 0.00 1.85
405 417 4.705023 CCTCCCTTGAATGGTCGTTTTTAT 59.295 41.667 0.00 0.00 0.00 1.40
519 531 2.281070 CCGCCGAGGATCCCATTG 60.281 66.667 8.55 0.00 45.00 2.82
562 574 0.539986 GGCCAACCGAGGATTCTGTA 59.460 55.000 0.00 0.00 0.00 2.74
565 577 1.627297 GGAGGCCAACCGAGGATTCT 61.627 60.000 5.01 0.00 42.76 2.40
568 580 0.326238 TAAGGAGGCCAACCGAGGAT 60.326 55.000 5.01 0.00 42.76 3.24
569 581 0.326238 ATAAGGAGGCCAACCGAGGA 60.326 55.000 5.01 0.00 42.76 3.71
574 586 2.496070 GGAACAAATAAGGAGGCCAACC 59.504 50.000 5.01 8.40 0.00 3.77
575 587 3.161866 TGGAACAAATAAGGAGGCCAAC 58.838 45.455 5.01 0.00 31.92 3.77
753 776 2.724839 CGAGCAACCAAAACAGCGATAC 60.725 50.000 0.00 0.00 0.00 2.24
755 778 0.238289 CGAGCAACCAAAACAGCGAT 59.762 50.000 0.00 0.00 0.00 4.58
814 840 7.540299 AGATACGCAATCCTCTAAAGTATAGC 58.460 38.462 0.00 0.00 34.90 2.97
840 866 2.094700 AGTTCGTCGATAGCTGCTTCAA 60.095 45.455 7.79 0.00 0.00 2.69
1100 1192 1.135575 GTTCAGGTGCAATGCTAGTGC 60.136 52.381 6.82 2.33 42.55 4.40
1131 1251 7.503902 GGATATATCCTTTCTGCCAGAAAAAGT 59.496 37.037 22.50 11.01 42.95 2.66
1132 1253 7.308229 CGGATATATCCTTTCTGCCAGAAAAAG 60.308 40.741 25.83 14.15 42.95 2.27
1181 1302 4.261656 CCTGGAGGTGAATGACTATCGTAC 60.262 50.000 0.00 0.00 0.00 3.67
1236 1391 7.599245 AGAAGTACAACAAGAATTAGAAGACGG 59.401 37.037 0.00 0.00 0.00 4.79
1238 1393 9.699703 AGAGAAGTACAACAAGAATTAGAAGAC 57.300 33.333 0.00 0.00 0.00 3.01
1330 1573 5.912149 ACCAAATAGCATCAATCCCTAGA 57.088 39.130 0.00 0.00 0.00 2.43
1335 1578 6.371809 TTTCGTACCAAATAGCATCAATCC 57.628 37.500 0.00 0.00 0.00 3.01
1465 1729 6.476706 GGGAAGCAAATCAAATTATACAGTGC 59.523 38.462 0.00 0.00 0.00 4.40
1556 1823 0.537188 TAAGCTCTGCCGGGAAGAAG 59.463 55.000 6.12 1.88 0.00 2.85
1672 1939 6.412362 AGACAGTGAGAATTCTAACACAGT 57.588 37.500 22.61 20.62 36.15 3.55
1757 2033 3.159213 TCCTTGCAACTCAACCATGAT 57.841 42.857 0.00 0.00 34.37 2.45
1850 2128 1.202927 TGCTGAAGGTGGGAGGAAAAG 60.203 52.381 0.00 0.00 0.00 2.27
1928 2207 6.590068 AGTCATTGACCATCTTATTCCTCAG 58.410 40.000 13.14 0.00 32.18 3.35
2058 2337 4.347607 ACTCCATGCCTTATTTTCAAGCT 58.652 39.130 0.00 0.00 0.00 3.74
2092 2371 4.985413 ACGCAATGTGATTTGGTATTCAG 58.015 39.130 0.00 0.00 0.00 3.02
2096 2375 3.630312 GGGTACGCAATGTGATTTGGTAT 59.370 43.478 4.83 0.00 0.00 2.73
2177 2481 0.035725 TCTGCAATGGTCTGCTCCAG 60.036 55.000 0.00 0.00 43.07 3.86
2236 2540 6.370994 ACTGATACTTGCAGTCAATCTCTTTG 59.629 38.462 0.00 0.00 42.62 2.77
2356 2660 1.530183 GATGATTGCTGCCTCCCCC 60.530 63.158 0.00 0.00 0.00 5.40
2357 2661 0.178970 ATGATGATTGCTGCCTCCCC 60.179 55.000 0.00 0.00 0.00 4.81
2361 2665 5.472478 CAGTACAATATGATGATTGCTGCCT 59.528 40.000 0.00 0.00 39.94 4.75
2422 2726 7.763528 AGCTCGAATATCCTCATGATTATTGTC 59.236 37.037 0.00 0.00 34.76 3.18
2424 2728 9.591792 TTAGCTCGAATATCCTCATGATTATTG 57.408 33.333 0.00 0.00 34.76 1.90
2434 2738 6.422400 CCAGAAGTTTTAGCTCGAATATCCTC 59.578 42.308 0.00 0.00 0.00 3.71
2444 2748 5.785243 AGTCTACACCAGAAGTTTTAGCTC 58.215 41.667 0.00 0.00 34.17 4.09
2450 2754 3.136626 AGCCAAGTCTACACCAGAAGTTT 59.863 43.478 0.00 0.00 34.17 2.66
2487 2791 5.261209 ACAAATGTCAGCAGCAAAACTAA 57.739 34.783 0.00 0.00 0.00 2.24
2510 2814 2.698855 ACGGGGAGATCAAAGTCATG 57.301 50.000 0.00 0.00 0.00 3.07
2524 2828 5.527582 CAGACCTTGATCTTTAATAACGGGG 59.472 44.000 0.00 0.00 0.00 5.73
2525 2829 5.007724 GCAGACCTTGATCTTTAATAACGGG 59.992 44.000 0.00 0.00 0.00 5.28
2527 2831 6.662414 TGCAGACCTTGATCTTTAATAACG 57.338 37.500 0.00 0.00 0.00 3.18
2536 2840 3.005554 CGTCATTTGCAGACCTTGATCT 58.994 45.455 0.00 0.00 32.41 2.75
2540 2844 1.069022 CACCGTCATTTGCAGACCTTG 60.069 52.381 0.00 0.00 32.41 3.61
2552 2856 0.251121 TTCATTGGGTGCACCGTCAT 60.251 50.000 29.08 17.36 44.64 3.06
2557 2861 2.837532 ACATTTTCATTGGGTGCACC 57.162 45.000 28.57 28.57 40.81 5.01
2558 2862 3.726607 TGAACATTTTCATTGGGTGCAC 58.273 40.909 8.80 8.80 36.79 4.57
2577 2881 7.890127 ACTCCAGTTTTAATCCTCATTCAATGA 59.110 33.333 0.00 0.00 37.76 2.57
2600 2904 6.780706 TGGCGCTTTAGCTATAAATAACTC 57.219 37.500 7.64 0.00 39.32 3.01
2610 2914 2.033299 GCATCATTTGGCGCTTTAGCTA 59.967 45.455 7.64 0.00 39.32 3.32
2613 2917 1.843992 GGCATCATTTGGCGCTTTAG 58.156 50.000 7.64 0.00 41.53 1.85
2638 2943 4.873827 TCGAAACCAAGTCATAGTTATGGC 59.126 41.667 0.00 0.00 38.54 4.40
2639 2944 6.338146 TCTCGAAACCAAGTCATAGTTATGG 58.662 40.000 0.00 0.00 37.19 2.74
2641 2946 8.012957 AGATCTCGAAACCAAGTCATAGTTAT 57.987 34.615 0.00 0.00 0.00 1.89
2642 2947 7.406031 AGATCTCGAAACCAAGTCATAGTTA 57.594 36.000 0.00 0.00 0.00 2.24
2643 2948 6.287589 AGATCTCGAAACCAAGTCATAGTT 57.712 37.500 0.00 0.00 0.00 2.24
2645 2950 9.619316 CTATAAGATCTCGAAACCAAGTCATAG 57.381 37.037 0.00 0.00 0.00 2.23
2646 2951 8.577296 CCTATAAGATCTCGAAACCAAGTCATA 58.423 37.037 0.00 0.00 0.00 2.15
2655 2961 8.705048 AGTTGAAACCTATAAGATCTCGAAAC 57.295 34.615 0.00 0.00 0.00 2.78
2666 2972 9.086758 GGTATAGGCTAGAGTTGAAACCTATAA 57.913 37.037 7.89 0.00 41.82 0.98
2670 2976 5.278061 TGGTATAGGCTAGAGTTGAAACCT 58.722 41.667 0.00 0.00 0.00 3.50
2686 2992 7.962964 TTGAGTCTCAAACAAGTTGGTATAG 57.037 36.000 13.00 2.02 37.85 1.31
2690 2996 4.399303 CCTTTGAGTCTCAAACAAGTTGGT 59.601 41.667 21.59 0.00 41.02 3.67
2729 3203 4.083003 TGCCGGTTTGAAGCTTTAACTATG 60.083 41.667 18.87 12.06 0.00 2.23
2741 3215 0.179004 ACTCCACATGCCGGTTTGAA 60.179 50.000 1.90 0.00 0.00 2.69
2742 3216 0.179004 AACTCCACATGCCGGTTTGA 60.179 50.000 1.90 0.00 0.00 2.69
2746 3220 1.671054 CGAAACTCCACATGCCGGT 60.671 57.895 1.90 0.00 0.00 5.28
2748 3222 0.871722 TTTCGAAACTCCACATGCCG 59.128 50.000 6.47 0.00 0.00 5.69
2751 3225 4.515191 TCCTTCTTTTCGAAACTCCACATG 59.485 41.667 10.79 0.00 0.00 3.21
2759 3233 2.140717 TCCGCTCCTTCTTTTCGAAAC 58.859 47.619 10.79 0.00 0.00 2.78
2764 3238 2.495084 ACAACTCCGCTCCTTCTTTTC 58.505 47.619 0.00 0.00 0.00 2.29
2796 3270 1.917872 ATTTGAAGCGGCCTTTGGTA 58.082 45.000 0.00 0.00 0.00 3.25
2803 3277 3.324993 TGAATTGAAATTTGAAGCGGCC 58.675 40.909 0.00 0.00 0.00 6.13
2806 3280 8.899776 GCTATCTATGAATTGAAATTTGAAGCG 58.100 33.333 0.00 0.00 0.00 4.68
2842 3316 5.414144 CAGGGAATTCTCCTTTCTGTTTCTC 59.586 44.000 11.53 0.00 42.05 2.87
2850 3324 5.012893 ACAATGTCAGGGAATTCTCCTTTC 58.987 41.667 11.53 8.89 42.05 2.62
2867 3341 9.125026 CCTTTTTATATTCTCAGCCTACAATGT 57.875 33.333 0.00 0.00 0.00 2.71
2937 3414 3.008049 ACGGATAGCACCATCCCTATTTC 59.992 47.826 6.46 0.00 41.38 2.17
2950 3427 7.290813 AGATCATATATACCAGACGGATAGCA 58.709 38.462 0.00 0.00 35.59 3.49
2952 3429 9.343539 TCAAGATCATATATACCAGACGGATAG 57.656 37.037 0.00 0.00 35.59 2.08
2953 3430 9.695155 TTCAAGATCATATATACCAGACGGATA 57.305 33.333 0.00 0.00 35.59 2.59
2954 3431 8.595362 TTCAAGATCATATATACCAGACGGAT 57.405 34.615 0.00 0.00 35.59 4.18
2955 3432 8.595362 ATTCAAGATCATATATACCAGACGGA 57.405 34.615 0.00 0.00 35.59 4.69
2956 3433 9.658799 AAATTCAAGATCATATATACCAGACGG 57.341 33.333 0.00 0.00 38.77 4.79
2982 3459 6.491062 TCGAAACGGAGGGAGTATATATCAAA 59.509 38.462 0.00 0.00 0.00 2.69
2993 3470 3.521947 AGTAATTCGAAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2994 3471 3.007182 ACAAGTAATTCGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2995 3472 3.332034 ACAAGTAATTCGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2996 3473 4.243270 AGACAAGTAATTCGAAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
2997 3474 4.921515 TGAGACAAGTAATTCGAAACGGAG 59.078 41.667 0.00 0.00 0.00 4.63
2998 3475 4.682860 GTGAGACAAGTAATTCGAAACGGA 59.317 41.667 0.00 0.00 0.00 4.69
2999 3476 4.432503 CGTGAGACAAGTAATTCGAAACGG 60.433 45.833 0.00 0.00 0.00 4.44
3000 3477 4.380678 TCGTGAGACAAGTAATTCGAAACG 59.619 41.667 0.00 2.95 33.31 3.60
3001 3478 5.817616 TCGTGAGACAAGTAATTCGAAAC 57.182 39.130 0.00 0.00 33.31 2.78
3002 3479 6.831727 TTTCGTGAGACAAGTAATTCGAAA 57.168 33.333 0.00 0.00 41.84 3.46
3003 3480 6.128661 CCATTTCGTGAGACAAGTAATTCGAA 60.129 38.462 0.00 0.00 41.84 3.71
3004 3481 5.347635 CCATTTCGTGAGACAAGTAATTCGA 59.652 40.000 0.00 0.00 41.84 3.71
3005 3482 5.120208 ACCATTTCGTGAGACAAGTAATTCG 59.880 40.000 0.00 0.00 41.84 3.34
3006 3483 6.307155 CACCATTTCGTGAGACAAGTAATTC 58.693 40.000 0.00 0.00 41.84 2.17
3007 3484 5.334879 GCACCATTTCGTGAGACAAGTAATT 60.335 40.000 0.00 0.00 41.84 1.40
3008 3485 4.154195 GCACCATTTCGTGAGACAAGTAAT 59.846 41.667 0.00 0.00 41.84 1.89
3009 3486 3.496884 GCACCATTTCGTGAGACAAGTAA 59.503 43.478 0.00 0.00 41.84 2.24
3010 3487 3.064207 GCACCATTTCGTGAGACAAGTA 58.936 45.455 0.00 0.00 41.84 2.24
3011 3488 1.873591 GCACCATTTCGTGAGACAAGT 59.126 47.619 0.00 0.00 41.84 3.16
3012 3489 2.146342 AGCACCATTTCGTGAGACAAG 58.854 47.619 0.00 0.00 41.84 3.16
3013 3490 2.254546 AGCACCATTTCGTGAGACAA 57.745 45.000 0.00 0.00 41.84 3.18
3014 3491 3.521560 GATAGCACCATTTCGTGAGACA 58.478 45.455 0.00 0.00 41.84 3.41
3015 3492 2.866762 GGATAGCACCATTTCGTGAGAC 59.133 50.000 0.00 0.00 41.84 3.36
3016 3493 2.481276 CGGATAGCACCATTTCGTGAGA 60.481 50.000 0.00 0.00 35.68 3.27
3017 3494 1.860950 CGGATAGCACCATTTCGTGAG 59.139 52.381 0.00 0.00 35.68 3.51
3018 3495 1.206132 ACGGATAGCACCATTTCGTGA 59.794 47.619 0.00 0.00 35.68 4.35
3019 3496 1.651987 ACGGATAGCACCATTTCGTG 58.348 50.000 0.00 0.00 36.80 4.35
3020 3497 2.396590 AACGGATAGCACCATTTCGT 57.603 45.000 0.00 0.00 0.00 3.85
3021 3498 4.116961 TCTAAACGGATAGCACCATTTCG 58.883 43.478 0.00 0.00 0.00 3.46
3022 3499 6.431198 TTTCTAAACGGATAGCACCATTTC 57.569 37.500 0.00 0.00 0.00 2.17
3023 3500 6.377146 ACATTTCTAAACGGATAGCACCATTT 59.623 34.615 0.00 0.00 0.00 2.32
3024 3501 5.885912 ACATTTCTAAACGGATAGCACCATT 59.114 36.000 0.00 0.00 0.00 3.16
3025 3502 5.437060 ACATTTCTAAACGGATAGCACCAT 58.563 37.500 0.00 0.00 0.00 3.55
3026 3503 4.839121 ACATTTCTAAACGGATAGCACCA 58.161 39.130 0.00 0.00 0.00 4.17
3027 3504 6.929606 AGATACATTTCTAAACGGATAGCACC 59.070 38.462 0.00 0.00 0.00 5.01
3028 3505 7.948278 AGATACATTTCTAAACGGATAGCAC 57.052 36.000 0.00 0.00 0.00 4.40
3029 3506 9.074576 TCTAGATACATTTCTAAACGGATAGCA 57.925 33.333 0.00 0.00 0.00 3.49
3062 3539 9.639601 CGCTGAAATGGATGTATCTATAACTAA 57.360 33.333 0.00 0.00 0.00 2.24
3063 3540 9.020731 TCGCTGAAATGGATGTATCTATAACTA 57.979 33.333 0.00 0.00 0.00 2.24
3064 3541 7.815068 GTCGCTGAAATGGATGTATCTATAACT 59.185 37.037 0.00 0.00 0.00 2.24
3065 3542 7.201359 CGTCGCTGAAATGGATGTATCTATAAC 60.201 40.741 0.00 0.00 0.00 1.89
3066 3543 6.806739 CGTCGCTGAAATGGATGTATCTATAA 59.193 38.462 0.00 0.00 0.00 0.98
3067 3544 6.150474 TCGTCGCTGAAATGGATGTATCTATA 59.850 38.462 0.00 0.00 0.00 1.31
3068 3545 5.048013 TCGTCGCTGAAATGGATGTATCTAT 60.048 40.000 0.00 0.00 0.00 1.98
3069 3546 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
3070 3547 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
3071 3548 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
3072 3549 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
3073 3550 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
3074 3551 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
3075 3552 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
3076 3553 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
3077 3554 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
3078 3555 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
3079 3556 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
3080 3557 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
3081 3558 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
3082 3559 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
3083 3560 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
3084 3561 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
3085 3562 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
3086 3563 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
3087 3564 2.598589 TCCGTTCCAAATTACTCGTCG 58.401 47.619 0.00 0.00 0.00 5.12
3088 3565 3.370061 CCTTCCGTTCCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
3089 3566 3.007182 TCCTTCCGTTCCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
3090 3567 3.592059 TCCTTCCGTTCCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
3091 3568 4.576879 ACTCCTTCCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
3092 3569 4.635699 ACTCCTTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
3093 3570 5.526479 GGATACTCCTTCCGTTCCAAATTAC 59.474 44.000 0.00 0.00 32.53 1.89
3094 3571 5.190132 TGGATACTCCTTCCGTTCCAAATTA 59.810 40.000 0.00 0.00 37.46 1.40
3095 3572 4.018779 TGGATACTCCTTCCGTTCCAAATT 60.019 41.667 0.00 0.00 37.46 1.82
3096 3573 3.521937 TGGATACTCCTTCCGTTCCAAAT 59.478 43.478 0.00 0.00 37.46 2.32
3097 3574 2.907696 TGGATACTCCTTCCGTTCCAAA 59.092 45.455 0.00 0.00 37.46 3.28
3098 3575 2.542550 TGGATACTCCTTCCGTTCCAA 58.457 47.619 0.00 0.00 37.46 3.53
3099 3576 2.241281 TGGATACTCCTTCCGTTCCA 57.759 50.000 0.00 0.00 37.46 3.53
3100 3577 2.698797 TGATGGATACTCCTTCCGTTCC 59.301 50.000 6.60 0.00 39.28 3.62
3101 3578 4.310769 CATGATGGATACTCCTTCCGTTC 58.689 47.826 6.60 0.00 39.28 3.95
3102 3579 3.495100 GCATGATGGATACTCCTTCCGTT 60.495 47.826 0.00 0.00 39.28 4.44
3103 3580 2.037772 GCATGATGGATACTCCTTCCGT 59.962 50.000 0.00 0.00 39.28 4.69
3104 3581 2.037641 TGCATGATGGATACTCCTTCCG 59.962 50.000 0.00 0.89 39.28 4.30
3105 3582 3.777106 TGCATGATGGATACTCCTTCC 57.223 47.619 0.00 0.00 39.28 3.46
3106 3583 4.965814 TCTTGCATGATGGATACTCCTTC 58.034 43.478 0.00 2.87 40.15 3.46
3107 3584 5.072736 TGATCTTGCATGATGGATACTCCTT 59.927 40.000 18.95 0.00 37.46 3.36
3108 3585 4.596212 TGATCTTGCATGATGGATACTCCT 59.404 41.667 18.95 0.00 37.46 3.69
3109 3586 4.903054 TGATCTTGCATGATGGATACTCC 58.097 43.478 18.95 3.73 36.96 3.85
3110 3587 5.163744 GCATGATCTTGCATGATGGATACTC 60.164 44.000 24.41 5.19 46.64 2.59
3111 3588 4.700692 GCATGATCTTGCATGATGGATACT 59.299 41.667 24.41 0.00 46.64 2.12
3112 3589 4.982999 GCATGATCTTGCATGATGGATAC 58.017 43.478 24.41 5.69 46.64 2.24
3125 3602 8.350722 CAGCTAACAATATTCTTGCATGATCTT 58.649 33.333 2.75 0.00 0.00 2.40
3127 3604 7.802251 GTCAGCTAACAATATTCTTGCATGATC 59.198 37.037 2.75 0.00 0.00 2.92
3128 3605 7.519488 CGTCAGCTAACAATATTCTTGCATGAT 60.519 37.037 2.75 0.00 0.00 2.45
3129 3606 6.238184 CGTCAGCTAACAATATTCTTGCATGA 60.238 38.462 0.00 0.00 0.00 3.07
3130 3607 5.905733 CGTCAGCTAACAATATTCTTGCATG 59.094 40.000 0.00 0.00 0.00 4.06
3131 3608 5.817296 TCGTCAGCTAACAATATTCTTGCAT 59.183 36.000 0.00 0.00 0.00 3.96
3132 3609 5.175127 TCGTCAGCTAACAATATTCTTGCA 58.825 37.500 0.00 0.00 0.00 4.08
3133 3610 5.718649 TCGTCAGCTAACAATATTCTTGC 57.281 39.130 0.00 0.00 0.00 4.01
3134 3611 6.178507 CGTTCGTCAGCTAACAATATTCTTG 58.821 40.000 0.00 0.00 0.00 3.02
3135 3612 5.867716 ACGTTCGTCAGCTAACAATATTCTT 59.132 36.000 0.00 0.00 0.00 2.52
3136 3613 5.408356 ACGTTCGTCAGCTAACAATATTCT 58.592 37.500 0.00 0.00 0.00 2.40
3137 3614 5.697848 ACGTTCGTCAGCTAACAATATTC 57.302 39.130 0.00 0.00 0.00 1.75
3138 3615 5.636121 TGAACGTTCGTCAGCTAACAATATT 59.364 36.000 22.48 0.00 0.00 1.28
3139 3616 5.165676 TGAACGTTCGTCAGCTAACAATAT 58.834 37.500 22.48 0.00 0.00 1.28
3140 3617 4.548494 TGAACGTTCGTCAGCTAACAATA 58.452 39.130 22.48 0.00 0.00 1.90
3141 3618 3.386486 TGAACGTTCGTCAGCTAACAAT 58.614 40.909 22.48 0.00 0.00 2.71
3142 3619 2.811855 TGAACGTTCGTCAGCTAACAA 58.188 42.857 22.48 0.00 0.00 2.83
3143 3620 2.495409 TGAACGTTCGTCAGCTAACA 57.505 45.000 22.48 0.00 0.00 2.41
3144 3621 3.047796 TCTTGAACGTTCGTCAGCTAAC 58.952 45.455 22.48 0.00 0.00 2.34
3145 3622 3.358707 TCTTGAACGTTCGTCAGCTAA 57.641 42.857 22.48 9.00 0.00 3.09
3146 3623 3.358707 TTCTTGAACGTTCGTCAGCTA 57.641 42.857 22.48 0.83 0.00 3.32
3147 3624 2.218953 TTCTTGAACGTTCGTCAGCT 57.781 45.000 22.48 0.00 0.00 4.24
3148 3625 3.521524 ATTTCTTGAACGTTCGTCAGC 57.478 42.857 22.48 0.00 0.00 4.26
3149 3626 6.590357 ACAATATTTCTTGAACGTTCGTCAG 58.410 36.000 22.48 17.33 0.00 3.51
3150 3627 6.533819 ACAATATTTCTTGAACGTTCGTCA 57.466 33.333 22.48 3.91 0.00 4.35
3151 3628 6.849305 ACAACAATATTTCTTGAACGTTCGTC 59.151 34.615 22.48 0.89 0.00 4.20
3152 3629 6.631238 CACAACAATATTTCTTGAACGTTCGT 59.369 34.615 22.48 7.92 0.00 3.85
3153 3630 6.086241 CCACAACAATATTTCTTGAACGTTCG 59.914 38.462 22.48 10.09 0.00 3.95
3154 3631 7.136119 TCCACAACAATATTTCTTGAACGTTC 58.864 34.615 21.42 21.42 0.00 3.95
3155 3632 7.033530 TCCACAACAATATTTCTTGAACGTT 57.966 32.000 0.00 0.00 0.00 3.99
3156 3633 6.627395 TCCACAACAATATTTCTTGAACGT 57.373 33.333 8.88 0.00 0.00 3.99
3157 3634 7.530010 AGATCCACAACAATATTTCTTGAACG 58.470 34.615 8.88 0.00 0.00 3.95
3158 3635 7.693951 CGAGATCCACAACAATATTTCTTGAAC 59.306 37.037 8.88 0.00 0.00 3.18
3159 3636 7.606073 TCGAGATCCACAACAATATTTCTTGAA 59.394 33.333 8.88 0.00 0.00 2.69
3160 3637 7.064609 GTCGAGATCCACAACAATATTTCTTGA 59.935 37.037 8.88 3.48 0.00 3.02
3161 3638 7.182761 GTCGAGATCCACAACAATATTTCTTG 58.817 38.462 0.00 0.00 0.00 3.02
3162 3639 6.036083 CGTCGAGATCCACAACAATATTTCTT 59.964 38.462 0.00 0.00 0.00 2.52
3163 3640 5.520288 CGTCGAGATCCACAACAATATTTCT 59.480 40.000 0.00 0.00 0.00 2.52
3164 3641 5.728255 CGTCGAGATCCACAACAATATTTC 58.272 41.667 0.00 0.00 0.00 2.17
3165 3642 4.034048 GCGTCGAGATCCACAACAATATTT 59.966 41.667 0.00 0.00 0.00 1.40
3166 3643 3.555956 GCGTCGAGATCCACAACAATATT 59.444 43.478 0.00 0.00 0.00 1.28
3167 3644 3.123804 GCGTCGAGATCCACAACAATAT 58.876 45.455 0.00 0.00 0.00 1.28
3168 3645 2.536365 GCGTCGAGATCCACAACAATA 58.464 47.619 0.00 0.00 0.00 1.90
3169 3646 1.359848 GCGTCGAGATCCACAACAAT 58.640 50.000 0.00 0.00 0.00 2.71
3170 3647 1.006825 CGCGTCGAGATCCACAACAA 61.007 55.000 0.00 0.00 0.00 2.83
3171 3648 1.443702 CGCGTCGAGATCCACAACA 60.444 57.895 0.00 0.00 0.00 3.33
3172 3649 2.789203 GCGCGTCGAGATCCACAAC 61.789 63.158 8.43 0.00 0.00 3.32
3173 3650 2.506217 GCGCGTCGAGATCCACAA 60.506 61.111 8.43 0.00 0.00 3.33
3174 3651 3.683587 CTGCGCGTCGAGATCCACA 62.684 63.158 8.43 0.00 0.00 4.17
3178 3655 2.352915 CCTCTGCGCGTCGAGATC 60.353 66.667 22.52 0.00 0.00 2.75
3191 3668 1.270907 GGTCAGGTCATGTGTCCTCT 58.729 55.000 0.00 0.00 31.23 3.69
3196 3673 2.050836 TTGCGGGTCAGGTCATGTGT 62.051 55.000 0.00 0.00 0.00 3.72
3197 3674 1.302431 TTGCGGGTCAGGTCATGTG 60.302 57.895 0.00 0.00 0.00 3.21
3214 3854 6.908825 TCGCTGCTTCTTGTAAAATATTGTT 58.091 32.000 0.00 0.00 0.00 2.83
3260 3900 1.583054 GTCGCCGGCAAGAGAAATAT 58.417 50.000 28.98 0.00 0.00 1.28
3261 3901 0.804544 CGTCGCCGGCAAGAGAAATA 60.805 55.000 28.98 0.00 0.00 1.40
3262 3902 2.100631 CGTCGCCGGCAAGAGAAAT 61.101 57.895 28.98 0.00 0.00 2.17
3294 3934 1.647545 TATTGCTGCTCGGCTGTTGC 61.648 55.000 0.00 6.38 38.76 4.17
3295 3935 1.019673 ATATTGCTGCTCGGCTGTTG 58.980 50.000 0.00 0.00 0.00 3.33
3296 3936 1.755179 AATATTGCTGCTCGGCTGTT 58.245 45.000 0.00 0.00 0.00 3.16
3297 3937 1.755179 AAATATTGCTGCTCGGCTGT 58.245 45.000 0.00 0.00 0.00 4.40
3298 3938 2.857592 AAAATATTGCTGCTCGGCTG 57.142 45.000 0.00 0.00 0.00 4.85
3299 3939 3.278574 TGTAAAATATTGCTGCTCGGCT 58.721 40.909 0.00 0.00 0.00 5.52
3300 3940 3.548818 CCTGTAAAATATTGCTGCTCGGC 60.549 47.826 0.00 0.00 0.00 5.54
3301 3941 3.003689 CCCTGTAAAATATTGCTGCTCGG 59.996 47.826 0.00 0.00 0.00 4.63
3302 3942 3.876914 TCCCTGTAAAATATTGCTGCTCG 59.123 43.478 0.00 0.00 0.00 5.03
3303 3943 5.835113 TTCCCTGTAAAATATTGCTGCTC 57.165 39.130 0.00 0.00 0.00 4.26
3304 3944 7.725397 TCATATTCCCTGTAAAATATTGCTGCT 59.275 33.333 0.00 0.00 0.00 4.24
3305 3945 7.885297 TCATATTCCCTGTAAAATATTGCTGC 58.115 34.615 0.00 0.00 0.00 5.25
3306 3946 8.517878 CCTCATATTCCCTGTAAAATATTGCTG 58.482 37.037 0.00 0.00 0.00 4.41
3307 3947 8.641498 CCTCATATTCCCTGTAAAATATTGCT 57.359 34.615 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.