Multiple sequence alignment - TraesCS3B01G609900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G609900 chr3B 100.000 2858 0 0 1 2858 828780704 828783561 0.000000e+00 5278.0
1 TraesCS3B01G609900 chr3B 92.344 849 56 5 1 848 104323901 104323061 0.000000e+00 1199.0
2 TraesCS3B01G609900 chr3B 92.797 833 36 9 2028 2858 470895358 470894548 0.000000e+00 1184.0
3 TraesCS3B01G609900 chr3B 90.371 727 57 11 845 1567 104321233 104320516 0.000000e+00 942.0
4 TraesCS3B01G609900 chr3B 88.550 131 10 2 1932 2057 104319709 104319579 1.370000e-33 154.0
5 TraesCS3B01G609900 chr3A 90.849 1661 108 23 1 1642 745474386 745472751 0.000000e+00 2185.0
6 TraesCS3B01G609900 chr3A 91.001 889 56 13 1 883 745437350 745436480 0.000000e+00 1177.0
7 TraesCS3B01G609900 chr3A 93.478 92 2 4 1785 1872 745472748 745472657 1.790000e-27 134.0
8 TraesCS3B01G609900 chr3A 89.720 107 3 5 1915 2013 745472571 745472465 2.310000e-26 130.0
9 TraesCS3B01G609900 chr3A 89.011 91 6 2 2757 2846 211047740 211047827 3.010000e-20 110.0
10 TraesCS3B01G609900 chrUn 90.889 889 57 13 1 883 199234199 199235069 0.000000e+00 1171.0
11 TraesCS3B01G609900 chr6B 90.743 821 48 10 928 1736 435588653 435587849 0.000000e+00 1070.0
12 TraesCS3B01G609900 chr6B 91.000 100 3 4 1915 2011 435587553 435587457 2.310000e-26 130.0
13 TraesCS3B01G609900 chr6A 90.621 821 49 14 928 1736 391258837 391258033 0.000000e+00 1064.0
14 TraesCS3B01G609900 chr6D 91.344 774 43 9 972 1736 273834123 273833365 0.000000e+00 1037.0
15 TraesCS3B01G609900 chr6D 80.247 486 70 16 6 484 273836810 273836344 2.730000e-90 342.0
16 TraesCS3B01G609900 chr6D 91.000 100 3 4 1915 2011 273833069 273832973 2.310000e-26 130.0
17 TraesCS3B01G609900 chr3D 90.838 513 28 7 495 1005 610789631 610789136 0.000000e+00 669.0
18 TraesCS3B01G609900 chr3D 93.144 423 20 1 1173 1595 610789139 610788726 1.880000e-171 612.0
19 TraesCS3B01G609900 chr3D 86.811 508 40 5 1 507 610791237 610790756 2.500000e-150 542.0
20 TraesCS3B01G609900 chr3D 98.319 119 2 0 1915 2033 610744034 610743916 2.890000e-50 209.0
21 TraesCS3B01G609900 chr3D 90.566 106 3 2 1915 2013 610788517 610788412 1.790000e-27 134.0
22 TraesCS3B01G609900 chr3D 97.561 41 1 0 1613 1653 610788728 610788688 1.420000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G609900 chr3B 828780704 828783561 2857 False 5278.000000 5278 100.000000 1 2858 1 chr3B.!!$F1 2857
1 TraesCS3B01G609900 chr3B 470894548 470895358 810 True 1184.000000 1184 92.797000 2028 2858 1 chr3B.!!$R1 830
2 TraesCS3B01G609900 chr3B 104319579 104323901 4322 True 765.000000 1199 90.421667 1 2057 3 chr3B.!!$R2 2056
3 TraesCS3B01G609900 chr3A 745436480 745437350 870 True 1177.000000 1177 91.001000 1 883 1 chr3A.!!$R1 882
4 TraesCS3B01G609900 chr3A 745472465 745474386 1921 True 816.333333 2185 91.349000 1 2013 3 chr3A.!!$R2 2012
5 TraesCS3B01G609900 chrUn 199234199 199235069 870 False 1171.000000 1171 90.889000 1 883 1 chrUn.!!$F1 882
6 TraesCS3B01G609900 chr6B 435587457 435588653 1196 True 600.000000 1070 90.871500 928 2011 2 chr6B.!!$R1 1083
7 TraesCS3B01G609900 chr6A 391258033 391258837 804 True 1064.000000 1064 90.621000 928 1736 1 chr6A.!!$R1 808
8 TraesCS3B01G609900 chr6D 273832973 273836810 3837 True 503.000000 1037 87.530333 6 2011 3 chr6D.!!$R1 2005
9 TraesCS3B01G609900 chr3D 610788412 610791237 2825 True 405.660000 669 91.784000 1 2013 5 chr3D.!!$R2 2012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 5081 1.137594 AAACCCCAATCCCTCGTCCA 61.138 55.0 0.00 0.00 0.00 4.02 F
1507 5700 0.747644 CATCAATGCCGGGTACTGCA 60.748 55.0 2.18 7.52 39.89 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 6655 0.767375 TGAGCATATCTCCTTGGCCC 59.233 55.0 0.0 0.0 41.18 5.80 R
2706 7644 1.160137 AAGTCGCATCACTGAAAGGC 58.840 50.0 0.0 0.0 39.30 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 3.748048 TCGGAGTGATTCTTTGAGCAAAG 59.252 43.478 15.06 15.06 46.82 2.77
153 155 4.658063 AGGAAAATCGGTGTTTGGTCATA 58.342 39.130 0.00 0.00 0.00 2.15
167 170 7.538678 GTGTTTGGTCATATAAGCTTTGTTGAG 59.461 37.037 3.20 0.00 0.00 3.02
168 171 7.446931 TGTTTGGTCATATAAGCTTTGTTGAGA 59.553 33.333 3.20 0.00 0.00 3.27
211 214 7.399245 AACCAGCTCACTAAAGTTTAAAACA 57.601 32.000 0.00 0.00 0.00 2.83
287 290 1.486310 TGATCGTTCAATGGGAGGAGG 59.514 52.381 0.00 0.00 0.00 4.30
303 306 4.508662 GAGGAGGTGTTTCCATTGACTAG 58.491 47.826 0.00 0.00 39.84 2.57
324 327 2.229062 GGAGACGTCAGTGATGACTTCA 59.771 50.000 19.50 0.00 38.88 3.02
336 339 5.296283 AGTGATGACTTCAGCAATATCAAGC 59.704 40.000 0.00 0.00 44.41 4.01
337 340 5.065602 GTGATGACTTCAGCAATATCAAGCA 59.934 40.000 0.00 0.00 44.41 3.91
365 368 1.249407 GGCTCGATATCTCGGAGGTT 58.751 55.000 4.96 0.00 45.10 3.50
372 375 5.557866 TCGATATCTCGGAGGTTCTCATAA 58.442 41.667 4.96 0.00 45.10 1.90
373 376 5.411977 TCGATATCTCGGAGGTTCTCATAAC 59.588 44.000 4.96 0.00 45.10 1.89
444 450 8.207545 TGTATGTGAGCATATGTGGTTATAACA 58.792 33.333 17.16 0.00 39.49 2.41
484 491 9.453572 TCATTCTCACAGAATAAACATTAGCTT 57.546 29.630 0.00 0.00 42.67 3.74
532 2852 4.625742 CGTGGATTTACACCTAGTTGTCAG 59.374 45.833 0.00 0.00 38.11 3.51
598 2921 1.209383 CGGACGTTCGCTGAAGAGA 59.791 57.895 1.83 0.00 0.00 3.10
633 2956 5.590104 ACAATTTCCGTTGCAATTTTAGC 57.410 34.783 0.59 0.00 32.32 3.09
661 2984 5.426833 AGGGTGACATATTTTGAGACTAGCT 59.573 40.000 0.00 0.00 0.00 3.32
662 2985 6.611642 AGGGTGACATATTTTGAGACTAGCTA 59.388 38.462 0.00 0.00 0.00 3.32
663 2986 6.926272 GGGTGACATATTTTGAGACTAGCTAG 59.074 42.308 19.44 19.44 0.00 3.42
664 2987 6.422400 GGTGACATATTTTGAGACTAGCTAGC 59.578 42.308 20.91 6.62 0.00 3.42
765 3089 3.126073 GACGTTCGTTGGGAGTTACTTT 58.874 45.455 0.00 0.00 0.00 2.66
853 5008 1.811266 CGAACCAGGTGAGCCATCG 60.811 63.158 0.00 0.00 37.19 3.84
877 5032 8.244802 TCGAAGCTGCTTCCTCTTATATATAAC 58.755 37.037 30.56 6.65 37.20 1.89
878 5033 7.219154 CGAAGCTGCTTCCTCTTATATATAACG 59.781 40.741 30.56 13.94 37.20 3.18
924 5081 1.137594 AAACCCCAATCCCTCGTCCA 61.138 55.000 0.00 0.00 0.00 4.02
945 5111 1.350310 ACAAACCCTCGTCCCCAAGT 61.350 55.000 0.00 0.00 0.00 3.16
1194 5378 0.752009 CCGAGATCCAGAACGAGGGA 60.752 60.000 0.00 0.00 37.64 4.20
1441 5634 2.673368 GTCCGTGAGCTATTTGACAAGG 59.327 50.000 0.00 0.00 34.30 3.61
1507 5700 0.747644 CATCAATGCCGGGTACTGCA 60.748 55.000 2.18 7.52 39.89 4.41
1677 6418 3.330720 GGTGGGAGTGGTGGGGAG 61.331 72.222 0.00 0.00 0.00 4.30
1686 6427 2.689034 GGTGGGGAGGCTGCTACT 60.689 66.667 5.84 0.00 0.00 2.57
1687 6428 2.586792 GTGGGGAGGCTGCTACTG 59.413 66.667 5.84 0.00 0.00 2.74
1688 6429 3.402681 TGGGGAGGCTGCTACTGC 61.403 66.667 5.84 0.00 40.20 4.40
1689 6430 3.086600 GGGGAGGCTGCTACTGCT 61.087 66.667 5.84 0.00 40.48 4.24
1690 6431 1.762460 GGGGAGGCTGCTACTGCTA 60.762 63.158 5.84 0.00 40.48 3.49
1691 6432 1.745264 GGGAGGCTGCTACTGCTAG 59.255 63.158 5.84 0.00 40.48 3.42
1692 6433 0.757188 GGGAGGCTGCTACTGCTAGA 60.757 60.000 5.84 0.00 40.48 2.43
1743 6577 1.478510 GTTGAGGAGGAGATTGAGCGA 59.521 52.381 0.00 0.00 0.00 4.93
1745 6579 1.478510 TGAGGAGGAGATTGAGCGAAC 59.521 52.381 0.00 0.00 0.00 3.95
1762 6596 2.732597 CGAACGGTGCTAGAGAAGAAGG 60.733 54.545 0.00 0.00 0.00 3.46
1814 6655 3.207669 GCAAGGCGAGCTGATGGG 61.208 66.667 0.00 0.00 0.00 4.00
1867 6709 4.921644 AGGACTAGCTAGGAGATAGACC 57.078 50.000 24.35 10.89 45.08 3.85
1871 6713 5.410355 ACTAGCTAGGAGATAGACCTACG 57.590 47.826 24.35 0.00 36.36 3.51
1872 6714 4.840115 ACTAGCTAGGAGATAGACCTACGT 59.160 45.833 24.35 0.00 36.36 3.57
1873 6715 4.010667 AGCTAGGAGATAGACCTACGTG 57.989 50.000 0.00 0.00 38.76 4.49
1874 6716 3.391955 AGCTAGGAGATAGACCTACGTGT 59.608 47.826 0.00 0.00 38.76 4.49
1875 6717 4.592351 AGCTAGGAGATAGACCTACGTGTA 59.408 45.833 0.00 0.00 38.76 2.90
1876 6718 5.248934 AGCTAGGAGATAGACCTACGTGTAT 59.751 44.000 0.00 0.00 38.76 2.29
1877 6719 6.440010 AGCTAGGAGATAGACCTACGTGTATA 59.560 42.308 0.00 0.00 38.76 1.47
1878 6720 7.126115 AGCTAGGAGATAGACCTACGTGTATAT 59.874 40.741 0.00 0.00 38.76 0.86
1909 6751 7.592938 TGTTCTTGTTTATCTTGGCTGTAATG 58.407 34.615 0.00 0.00 0.00 1.90
1910 6752 6.194796 TCTTGTTTATCTTGGCTGTAATGC 57.805 37.500 0.00 0.00 0.00 3.56
1912 6754 5.818136 TGTTTATCTTGGCTGTAATGCTC 57.182 39.130 0.00 0.00 0.00 4.26
1913 6755 5.500234 TGTTTATCTTGGCTGTAATGCTCT 58.500 37.500 0.00 0.00 0.00 4.09
2034 6970 3.859961 CGTCTTGCACTATGTGAACTAGG 59.140 47.826 1.52 0.00 35.23 3.02
2070 7008 6.996106 CGTTGCTACGGAACATTTTATAAGA 58.004 36.000 13.04 0.00 43.94 2.10
2108 7046 4.867608 ACACATGTGCAACCTAACAAAAAC 59.132 37.500 25.68 0.00 34.36 2.43
2126 7064 7.041107 ACAAAAACAACACATGCATAGTTTCT 58.959 30.769 12.53 2.69 0.00 2.52
2129 7067 9.762933 AAAAACAACACATGCATAGTTTCTTAT 57.237 25.926 12.53 0.47 0.00 1.73
2186 7124 5.291293 ACGGACACTTAAATGGAATTTCG 57.709 39.130 0.00 0.00 44.81 3.46
2252 7190 6.958767 AGCAATGGACTTACTAATAGGTTGT 58.041 36.000 0.00 0.00 0.00 3.32
2260 7198 6.178324 ACTTACTAATAGGTTGTTTGGCTCC 58.822 40.000 0.00 0.00 0.00 4.70
2266 7204 1.104577 GGTTGTTTGGCTCCGTTGGA 61.105 55.000 0.00 0.00 0.00 3.53
2312 7250 7.119387 ACCCTTTTCGATCTATTTTTCCTGAT 58.881 34.615 0.00 0.00 0.00 2.90
2376 7314 9.733556 TTAATTCTTACCATCACTAAGCTTGAA 57.266 29.630 9.86 0.00 0.00 2.69
2377 7315 8.635765 AATTCTTACCATCACTAAGCTTGAAA 57.364 30.769 9.86 0.00 0.00 2.69
2378 7316 7.672983 TTCTTACCATCACTAAGCTTGAAAG 57.327 36.000 9.86 0.48 0.00 2.62
2379 7317 7.004555 TCTTACCATCACTAAGCTTGAAAGA 57.995 36.000 9.86 2.21 0.00 2.52
2380 7318 7.099764 TCTTACCATCACTAAGCTTGAAAGAG 58.900 38.462 9.86 0.00 0.00 2.85
2381 7319 4.006319 ACCATCACTAAGCTTGAAAGAGC 58.994 43.478 9.86 0.00 43.02 4.09
2389 7327 2.789491 GCTTGAAAGAGCTTTGCTGT 57.211 45.000 0.00 0.00 39.88 4.40
2390 7328 3.904136 GCTTGAAAGAGCTTTGCTGTA 57.096 42.857 0.00 0.00 39.88 2.74
2391 7329 3.559504 GCTTGAAAGAGCTTTGCTGTAC 58.440 45.455 0.00 0.00 39.88 2.90
2392 7330 3.251972 GCTTGAAAGAGCTTTGCTGTACT 59.748 43.478 0.00 0.00 39.88 2.73
2393 7331 4.452455 GCTTGAAAGAGCTTTGCTGTACTA 59.548 41.667 0.00 0.00 39.88 1.82
2394 7332 5.615764 GCTTGAAAGAGCTTTGCTGTACTAC 60.616 44.000 0.00 0.00 39.88 2.73
2499 7437 7.503521 TGTGAACTCAAATTGCAAGTGTATA 57.496 32.000 4.94 0.00 0.00 1.47
2543 7481 4.938080 AGTACCAGATGAAACTGCGATAG 58.062 43.478 0.00 0.00 36.67 2.08
2552 7490 2.831685 AACTGCGATAGTGTGTCCAA 57.168 45.000 0.00 0.00 40.26 3.53
2639 7577 5.467035 AAATGTATGACCAAAACCCAGTG 57.533 39.130 0.00 0.00 0.00 3.66
2648 7586 4.542697 ACCAAAACCCAGTGAAGTAACAT 58.457 39.130 0.00 0.00 0.00 2.71
2721 7659 1.401931 CCTTTGCCTTTCAGTGATGCG 60.402 52.381 0.00 0.00 0.00 4.73
2752 7690 9.892130 ATCTATTCTTTTAGAAACTGTACCTGG 57.108 33.333 0.00 0.00 37.82 4.45
2754 7692 7.981102 ATTCTTTTAGAAACTGTACCTGGAC 57.019 36.000 0.00 0.00 37.82 4.02
2826 7764 1.799258 CTCACCAAGTGCCAGGCAAC 61.799 60.000 18.28 10.87 41.47 4.17
2827 7765 2.283143 TCACCAAGTGCCAGGCAACT 62.283 55.000 18.28 13.18 41.47 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 3.552068 CCAAACACCGATTTTCCTTGTCC 60.552 47.826 0.00 0.00 0.00 4.02
153 155 5.649831 GGATGTTCCTCTCAACAAAGCTTAT 59.350 40.000 0.00 0.00 39.69 1.73
167 170 0.320374 TCACCACACGGATGTTCCTC 59.680 55.000 0.00 0.00 36.72 3.71
168 171 0.762418 TTCACCACACGGATGTTCCT 59.238 50.000 0.00 0.00 36.72 3.36
236 239 9.474920 TGGAAACACTGAAATAAATTTAGCAAG 57.525 29.630 3.94 2.07 33.40 4.01
265 268 3.434167 CCTCCTCCCATTGAACGATCATT 60.434 47.826 0.00 0.00 34.96 2.57
269 272 1.210478 CACCTCCTCCCATTGAACGAT 59.790 52.381 0.00 0.00 0.00 3.73
287 290 6.356095 GACGTCTCCTAGTCAATGGAAACAC 61.356 48.000 8.70 0.00 39.25 3.32
324 327 4.321452 CCAACACAACTGCTTGATATTGCT 60.321 41.667 0.00 0.00 0.00 3.91
336 339 3.525537 AGATATCGAGCCAACACAACTG 58.474 45.455 0.00 0.00 0.00 3.16
337 340 3.735208 CGAGATATCGAGCCAACACAACT 60.735 47.826 2.99 0.00 34.64 3.16
365 368 4.180817 CACGCACACCTTATGTTATGAGA 58.819 43.478 0.00 0.00 40.64 3.27
372 375 1.301401 ACGCACGCACACCTTATGT 60.301 52.632 0.00 0.00 44.81 2.29
373 376 1.132436 CACGCACGCACACCTTATG 59.868 57.895 0.00 0.00 0.00 1.90
444 450 8.849168 TCTGTGAGAATGAACATTTTGTAACAT 58.151 29.630 1.56 0.00 32.12 2.71
484 491 6.706295 CAAAATAAAAAGGACCCTAATGGCA 58.294 36.000 0.00 0.00 37.83 4.92
565 2885 2.740447 ACGTCCGCCAACTAAAAGATTC 59.260 45.455 0.00 0.00 0.00 2.52
598 2921 4.274950 ACGGAAATTGTTCGAAATGTCACT 59.725 37.500 0.00 0.00 34.28 3.41
633 2956 6.644347 AGTCTCAAAATATGTCACCCTACAG 58.356 40.000 0.00 0.00 31.70 2.74
730 3054 2.126228 CGTCCTCGCAGCCGTTTA 60.126 61.111 0.00 0.00 35.54 2.01
765 3089 0.534877 ACTGGTGAATGTTCGCTGCA 60.535 50.000 0.00 0.00 37.80 4.41
825 3149 1.067582 CCTGGTTCGTATCCGCTCC 59.932 63.158 0.00 0.00 0.00 4.70
853 5008 8.030106 ACGTTATATATAAGAGGAAGCAGCTTC 58.970 37.037 24.93 24.93 39.52 3.86
877 5032 4.143389 GCTGCGCTACCTTTATGTATTACG 60.143 45.833 9.73 0.00 0.00 3.18
878 5033 4.151867 GGCTGCGCTACCTTTATGTATTAC 59.848 45.833 9.73 0.00 0.00 1.89
924 5081 1.637724 TTGGGGACGAGGGTTTGTGT 61.638 55.000 0.00 0.00 0.00 3.72
1143 5327 2.755876 ATCTCGCGCAGGACCTCA 60.756 61.111 8.75 0.00 0.00 3.86
1169 5353 0.744771 GTTCTGGATCTCGGCCAACC 60.745 60.000 2.24 0.00 34.44 3.77
1441 5634 2.551270 CTTGCGGACGTCAAGTGC 59.449 61.111 18.91 15.16 36.93 4.40
1507 5700 7.545265 GTCCTCGTCGTCATAGTAATAGTATCT 59.455 40.741 0.00 0.00 0.00 1.98
1610 6342 2.947938 ATTCTTCATGGCCTCCCGCG 62.948 60.000 3.32 0.00 38.94 6.46
1651 6392 4.341783 ACTCCCACCTGCTGCAGC 62.342 66.667 31.89 31.89 42.50 5.25
1652 6393 2.359602 CACTCCCACCTGCTGCAG 60.360 66.667 22.44 22.44 0.00 4.41
1666 6407 3.562681 TAGCAGCCTCCCCACCACT 62.563 63.158 0.00 0.00 0.00 4.00
1677 6418 0.673437 CCTCTCTAGCAGTAGCAGCC 59.327 60.000 0.00 0.00 45.49 4.85
1686 6427 0.528017 CGAACAGCACCTCTCTAGCA 59.472 55.000 0.00 0.00 0.00 3.49
1687 6428 0.811915 TCGAACAGCACCTCTCTAGC 59.188 55.000 0.00 0.00 0.00 3.42
1688 6429 1.403679 CCTCGAACAGCACCTCTCTAG 59.596 57.143 0.00 0.00 0.00 2.43
1689 6430 1.004394 TCCTCGAACAGCACCTCTCTA 59.996 52.381 0.00 0.00 0.00 2.43
1690 6431 0.251386 TCCTCGAACAGCACCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
1691 6432 0.172352 CTCCTCGAACAGCACCTCTC 59.828 60.000 0.00 0.00 0.00 3.20
1692 6433 1.254284 CCTCCTCGAACAGCACCTCT 61.254 60.000 0.00 0.00 0.00 3.69
1743 6577 2.494073 CTCCTTCTTCTCTAGCACCGTT 59.506 50.000 0.00 0.00 0.00 4.44
1745 6579 1.407258 CCTCCTTCTTCTCTAGCACCG 59.593 57.143 0.00 0.00 0.00 4.94
1814 6655 0.767375 TGAGCATATCTCCTTGGCCC 59.233 55.000 0.00 0.00 41.18 5.80
1881 6723 7.944729 ACAGCCAAGATAAACAAGAACATAT 57.055 32.000 0.00 0.00 0.00 1.78
1909 6751 5.163561 ACAAAGATCAGTAGAGCAGTAGAGC 60.164 44.000 0.00 0.00 30.99 4.09
1910 6752 6.449635 ACAAAGATCAGTAGAGCAGTAGAG 57.550 41.667 0.00 0.00 30.99 2.43
1912 6754 5.290643 GCAACAAAGATCAGTAGAGCAGTAG 59.709 44.000 0.00 0.00 30.99 2.57
1913 6755 5.171476 GCAACAAAGATCAGTAGAGCAGTA 58.829 41.667 0.00 0.00 30.99 2.74
2034 6970 4.218478 GCAACGCGCGGGTATCAC 62.218 66.667 35.22 14.74 0.00 3.06
2070 7008 5.192927 CACATGTGTACCCATCAATAGGTT 58.807 41.667 18.03 0.00 37.59 3.50
2082 7020 3.142951 TGTTAGGTTGCACATGTGTACC 58.857 45.455 29.71 29.71 37.54 3.34
2166 7104 4.082463 TGCCGAAATTCCATTTAAGTGTCC 60.082 41.667 0.00 0.00 31.47 4.02
2186 7124 5.752955 TCAATTTAGCTGTCTTTTGTTTGCC 59.247 36.000 0.00 0.00 0.00 4.52
2301 7239 7.147976 GTGCAGACAACTTTATCAGGAAAAAT 58.852 34.615 0.00 0.00 0.00 1.82
2350 7288 9.733556 TTCAAGCTTAGTGATGGTAAGAATTAA 57.266 29.630 0.00 0.00 28.70 1.40
2373 7311 5.215252 AGTAGTACAGCAAAGCTCTTTCA 57.785 39.130 2.52 0.00 36.40 2.69
2374 7312 8.928270 TTATAGTAGTACAGCAAAGCTCTTTC 57.072 34.615 2.52 0.00 36.40 2.62
2376 7314 7.982354 CCTTTATAGTAGTACAGCAAAGCTCTT 59.018 37.037 2.52 0.00 36.40 2.85
2377 7315 7.342284 TCCTTTATAGTAGTACAGCAAAGCTCT 59.658 37.037 2.52 0.00 36.40 4.09
2378 7316 7.490000 TCCTTTATAGTAGTACAGCAAAGCTC 58.510 38.462 2.52 0.00 36.40 4.09
2379 7317 7.419711 TCCTTTATAGTAGTACAGCAAAGCT 57.580 36.000 2.52 0.00 40.77 3.74
2380 7318 7.764901 ACTTCCTTTATAGTAGTACAGCAAAGC 59.235 37.037 2.52 0.00 0.00 3.51
2381 7319 9.654663 AACTTCCTTTATAGTAGTACAGCAAAG 57.345 33.333 2.52 7.99 0.00 2.77
2390 7328 8.491958 CCCACCATTAACTTCCTTTATAGTAGT 58.508 37.037 0.00 0.00 0.00 2.73
2391 7329 7.937394 CCCCACCATTAACTTCCTTTATAGTAG 59.063 40.741 0.00 0.00 0.00 2.57
2392 7330 7.406739 ACCCCACCATTAACTTCCTTTATAGTA 59.593 37.037 0.00 0.00 0.00 1.82
2393 7331 6.218938 ACCCCACCATTAACTTCCTTTATAGT 59.781 38.462 0.00 0.00 0.00 2.12
2394 7332 6.546034 CACCCCACCATTAACTTCCTTTATAG 59.454 42.308 0.00 0.00 0.00 1.31
2499 7437 9.840427 GTACTATTTTCACATTGCACATAAACT 57.160 29.630 0.00 0.00 0.00 2.66
2522 7460 4.504461 CACTATCGCAGTTTCATCTGGTAC 59.496 45.833 0.00 0.00 34.26 3.34
2543 7481 5.468592 TGCATATTTGAACATTGGACACAC 58.531 37.500 0.00 0.00 0.00 3.82
2552 7490 5.714333 TGGTTGGTACTGCATATTTGAACAT 59.286 36.000 0.00 0.00 0.00 2.71
2609 7547 9.495572 GGGTTTTGGTCATACATTTATTTGAAA 57.504 29.630 0.00 0.00 0.00 2.69
2610 7548 8.651389 TGGGTTTTGGTCATACATTTATTTGAA 58.349 29.630 0.00 0.00 0.00 2.69
2624 7562 2.818751 ACTTCACTGGGTTTTGGTCA 57.181 45.000 0.00 0.00 0.00 4.02
2628 7566 9.620660 GTAATAATGTTACTTCACTGGGTTTTG 57.379 33.333 0.00 0.00 0.00 2.44
2632 7570 7.455058 TGTGTAATAATGTTACTTCACTGGGT 58.545 34.615 1.81 0.00 0.00 4.51
2706 7644 1.160137 AAGTCGCATCACTGAAAGGC 58.840 50.000 0.00 0.00 39.30 4.35
2710 7648 7.043961 AGAATAGATAAGTCGCATCACTGAA 57.956 36.000 0.00 0.00 0.00 3.02
2752 7690 5.216614 ACCTCTTTTGAAGTACCTCTGTC 57.783 43.478 0.00 0.00 0.00 3.51
2754 7692 6.522054 TGTAACCTCTTTTGAAGTACCTCTG 58.478 40.000 0.00 0.00 0.00 3.35
2763 7701 6.321181 AGCACTTTCATGTAACCTCTTTTGAA 59.679 34.615 0.00 0.00 0.00 2.69
2826 7764 2.821969 AGTGGTTTTAATCTGCTGCCAG 59.178 45.455 0.00 0.00 40.54 4.85
2827 7765 2.557924 CAGTGGTTTTAATCTGCTGCCA 59.442 45.455 0.00 0.00 0.00 4.92
2829 7767 3.667960 CGTCAGTGGTTTTAATCTGCTGC 60.668 47.826 0.00 0.00 0.00 5.25
2830 7768 3.667960 GCGTCAGTGGTTTTAATCTGCTG 60.668 47.826 0.00 0.00 0.00 4.41
2831 7769 2.484264 GCGTCAGTGGTTTTAATCTGCT 59.516 45.455 0.00 0.00 0.00 4.24
2832 7770 2.484264 AGCGTCAGTGGTTTTAATCTGC 59.516 45.455 0.00 0.00 0.00 4.26
2833 7771 3.125316 GGAGCGTCAGTGGTTTTAATCTG 59.875 47.826 0.00 0.00 0.00 2.90
2834 7772 3.008049 AGGAGCGTCAGTGGTTTTAATCT 59.992 43.478 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.