Multiple sequence alignment - TraesCS3B01G608600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G608600 chr3B 100.000 2783 0 0 1 2783 826920671 826917889 0.000000e+00 5140.0
1 TraesCS3B01G608600 chr3D 92.628 1248 53 12 835 2065 612263558 612264783 0.000000e+00 1759.0
2 TraesCS3B01G608600 chr3D 89.815 108 9 1 567 672 612262768 612262875 1.340000e-28 137.0
3 TraesCS3B01G608600 chr3D 88.525 61 7 0 482 542 96390269 96390329 1.070000e-09 75.0
4 TraesCS3B01G608600 chr3A 92.909 973 51 11 835 1806 746900548 746901503 0.000000e+00 1399.0
5 TraesCS3B01G608600 chr3A 90.566 159 7 3 1912 2065 746901495 746901650 1.310000e-48 204.0
6 TraesCS3B01G608600 chr3A 92.500 120 5 2 567 682 746899639 746899758 4.770000e-38 169.0
7 TraesCS3B01G608600 chr7A 89.826 688 68 2 2096 2783 157153114 157152429 0.000000e+00 881.0
8 TraesCS3B01G608600 chr7A 78.351 291 37 17 43 323 10374372 10374646 6.170000e-37 165.0
9 TraesCS3B01G608600 chr7A 84.615 78 9 3 464 539 704838946 704838870 1.070000e-09 75.0
10 TraesCS3B01G608600 chr6B 88.186 711 69 6 1021 1725 643131466 643132167 0.000000e+00 833.0
11 TraesCS3B01G608600 chr6B 89.684 601 51 5 1021 1620 642989561 642990151 0.000000e+00 756.0
12 TraesCS3B01G608600 chr6B 87.500 64 6 2 461 523 636976065 636976127 3.840000e-09 73.1
13 TraesCS3B01G608600 chr6B 100.000 28 0 0 82 109 66737053 66737026 5.000000e-03 52.8
14 TraesCS3B01G608600 chr6D 86.991 761 70 13 1021 1772 427170926 427171666 0.000000e+00 830.0
15 TraesCS3B01G608600 chr6A 86.309 745 70 21 1021 1761 571881425 571882141 0.000000e+00 782.0
16 TraesCS3B01G608600 chr2B 95.122 369 15 3 1 369 6301419 6301054 1.860000e-161 579.0
17 TraesCS3B01G608600 chr2B 87.273 495 47 12 1 490 718152375 718151892 4.050000e-153 551.0
18 TraesCS3B01G608600 chr2B 97.222 72 1 1 464 534 6301053 6300982 1.350000e-23 121.0
19 TraesCS3B01G608600 chr4B 84.026 313 39 10 1 310 623407715 623407411 9.750000e-75 291.0
20 TraesCS3B01G608600 chr1D 77.011 522 102 8 1043 1555 406677000 406676488 1.630000e-72 283.0
21 TraesCS3B01G608600 chr1B 76.836 531 103 10 1043 1562 546967819 546967298 5.870000e-72 281.0
22 TraesCS3B01G608600 chr1B 76.628 522 104 8 1043 1555 547178415 547177903 3.530000e-69 272.0
23 TraesCS3B01G608600 chr1B 77.546 383 72 8 1043 1421 546702163 546701791 4.670000e-53 219.0
24 TraesCS3B01G608600 chr7D 80.714 280 39 11 43 319 587168584 587168851 1.310000e-48 204.0
25 TraesCS3B01G608600 chr4A 74.886 219 41 12 2139 2351 737220376 737220586 1.370000e-13 87.9
26 TraesCS3B01G608600 chr4D 91.379 58 5 0 482 539 435974086 435974029 2.300000e-11 80.5
27 TraesCS3B01G608600 chr7B 94.118 51 3 0 483 533 616902476 616902526 8.260000e-11 78.7
28 TraesCS3B01G608600 chr5B 86.111 72 8 2 461 531 488217807 488217877 2.970000e-10 76.8
29 TraesCS3B01G608600 chr5B 88.710 62 4 3 464 523 507996543 507996603 3.840000e-09 73.1
30 TraesCS3B01G608600 chr2D 84.211 76 10 2 461 534 651642378 651642453 3.840000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G608600 chr3B 826917889 826920671 2782 True 5140.000000 5140 100.000000 1 2783 1 chr3B.!!$R1 2782
1 TraesCS3B01G608600 chr3D 612262768 612264783 2015 False 948.000000 1759 91.221500 567 2065 2 chr3D.!!$F2 1498
2 TraesCS3B01G608600 chr3A 746899639 746901650 2011 False 590.666667 1399 91.991667 567 2065 3 chr3A.!!$F1 1498
3 TraesCS3B01G608600 chr7A 157152429 157153114 685 True 881.000000 881 89.826000 2096 2783 1 chr7A.!!$R1 687
4 TraesCS3B01G608600 chr6B 643131466 643132167 701 False 833.000000 833 88.186000 1021 1725 1 chr6B.!!$F3 704
5 TraesCS3B01G608600 chr6B 642989561 642990151 590 False 756.000000 756 89.684000 1021 1620 1 chr6B.!!$F2 599
6 TraesCS3B01G608600 chr6D 427170926 427171666 740 False 830.000000 830 86.991000 1021 1772 1 chr6D.!!$F1 751
7 TraesCS3B01G608600 chr6A 571881425 571882141 716 False 782.000000 782 86.309000 1021 1761 1 chr6A.!!$F1 740
8 TraesCS3B01G608600 chr1D 406676488 406677000 512 True 283.000000 283 77.011000 1043 1555 1 chr1D.!!$R1 512
9 TraesCS3B01G608600 chr1B 546967298 546967819 521 True 281.000000 281 76.836000 1043 1562 1 chr1B.!!$R2 519
10 TraesCS3B01G608600 chr1B 547177903 547178415 512 True 272.000000 272 76.628000 1043 1555 1 chr1B.!!$R3 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 440 0.098728 GCACACACGTCACTTGCTTT 59.901 50.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2783 0.247736 GGCGGCCCACTCATCTATAG 59.752 60.0 8.12 0.0 0.0 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.849166 GAATAAATTTATTCGTGTCTCCCAAAA 57.151 29.630 26.93 0.00 39.51 2.44
67 68 8.491331 AAAAATGTGCACACTCTAAAAATTGT 57.509 26.923 24.37 0.77 0.00 2.71
68 69 8.491331 AAAATGTGCACACTCTAAAAATTGTT 57.509 26.923 24.37 4.54 0.00 2.83
69 70 7.467557 AATGTGCACACTCTAAAAATTGTTG 57.532 32.000 24.37 0.00 0.00 3.33
70 71 6.201226 TGTGCACACTCTAAAAATTGTTGA 57.799 33.333 17.42 0.00 0.00 3.18
71 72 6.264832 TGTGCACACTCTAAAAATTGTTGAG 58.735 36.000 17.42 0.00 0.00 3.02
72 73 5.687285 GTGCACACTCTAAAAATTGTTGAGG 59.313 40.000 13.17 4.86 0.00 3.86
73 74 5.221224 TGCACACTCTAAAAATTGTTGAGGG 60.221 40.000 7.93 7.93 34.64 4.30
74 75 5.009610 GCACACTCTAAAAATTGTTGAGGGA 59.990 40.000 13.69 0.00 32.95 4.20
75 76 6.294731 GCACACTCTAAAAATTGTTGAGGGAT 60.295 38.462 13.69 1.04 32.95 3.85
76 77 7.308435 CACACTCTAAAAATTGTTGAGGGATC 58.692 38.462 13.69 0.00 32.95 3.36
77 78 7.175641 CACACTCTAAAAATTGTTGAGGGATCT 59.824 37.037 13.69 0.00 32.95 2.75
78 79 7.725844 ACACTCTAAAAATTGTTGAGGGATCTT 59.274 33.333 13.69 0.00 32.95 2.40
79 80 9.231297 CACTCTAAAAATTGTTGAGGGATCTTA 57.769 33.333 10.60 0.00 30.38 2.10
80 81 9.807921 ACTCTAAAAATTGTTGAGGGATCTTAA 57.192 29.630 10.60 0.00 0.00 1.85
107 108 8.983307 AAATTGTGCATGTTTTCAAATTTTGT 57.017 23.077 8.89 0.00 0.00 2.83
108 109 8.983307 AATTGTGCATGTTTTCAAATTTTGTT 57.017 23.077 8.89 0.00 0.00 2.83
109 110 8.617761 ATTGTGCATGTTTTCAAATTTTGTTC 57.382 26.923 8.89 0.49 0.00 3.18
110 111 6.246449 TGTGCATGTTTTCAAATTTTGTTCG 58.754 32.000 8.89 0.00 0.00 3.95
111 112 6.091305 TGTGCATGTTTTCAAATTTTGTTCGA 59.909 30.769 8.89 0.00 0.00 3.71
112 113 6.624526 GTGCATGTTTTCAAATTTTGTTCGAG 59.375 34.615 8.89 0.00 0.00 4.04
113 114 6.533012 TGCATGTTTTCAAATTTTGTTCGAGA 59.467 30.769 8.89 0.00 0.00 4.04
114 115 7.063898 TGCATGTTTTCAAATTTTGTTCGAGAA 59.936 29.630 8.89 0.00 0.00 2.87
115 116 7.580165 GCATGTTTTCAAATTTTGTTCGAGAAG 59.420 33.333 8.89 0.00 0.00 2.85
116 117 8.806634 CATGTTTTCAAATTTTGTTCGAGAAGA 58.193 29.630 8.89 0.00 0.00 2.87
117 118 8.749841 TGTTTTCAAATTTTGTTCGAGAAGAA 57.250 26.923 8.89 0.00 36.31 2.52
118 119 9.197694 TGTTTTCAAATTTTGTTCGAGAAGAAA 57.802 25.926 8.89 4.35 41.10 2.52
122 123 8.925161 TCAAATTTTGTTCGAGAAGAAATTGT 57.075 26.923 15.20 5.18 41.10 2.71
123 124 9.364989 TCAAATTTTGTTCGAGAAGAAATTGTT 57.635 25.926 15.20 7.78 41.10 2.83
124 125 9.623687 CAAATTTTGTTCGAGAAGAAATTGTTC 57.376 29.630 8.61 0.00 41.10 3.18
125 126 8.925161 AATTTTGTTCGAGAAGAAATTGTTCA 57.075 26.923 8.61 0.00 41.10 3.18
126 127 7.969387 TTTTGTTCGAGAAGAAATTGTTCAG 57.031 32.000 8.61 0.00 41.10 3.02
127 128 6.918892 TTGTTCGAGAAGAAATTGTTCAGA 57.081 33.333 5.67 1.97 41.10 3.27
128 129 6.918892 TGTTCGAGAAGAAATTGTTCAGAA 57.081 33.333 5.67 7.47 41.10 3.02
129 130 7.496529 TGTTCGAGAAGAAATTGTTCAGAAT 57.503 32.000 13.43 0.00 41.10 2.40
130 131 8.601845 TGTTCGAGAAGAAATTGTTCAGAATA 57.398 30.769 13.43 9.96 41.10 1.75
131 132 8.495949 TGTTCGAGAAGAAATTGTTCAGAATAC 58.504 33.333 13.43 6.64 41.10 1.89
132 133 7.596749 TCGAGAAGAAATTGTTCAGAATACC 57.403 36.000 5.67 0.00 36.09 2.73
133 134 7.158697 TCGAGAAGAAATTGTTCAGAATACCA 58.841 34.615 5.67 0.00 36.09 3.25
134 135 7.659799 TCGAGAAGAAATTGTTCAGAATACCAA 59.340 33.333 5.67 0.00 36.09 3.67
135 136 8.289618 CGAGAAGAAATTGTTCAGAATACCAAA 58.710 33.333 5.67 0.00 36.09 3.28
136 137 9.965824 GAGAAGAAATTGTTCAGAATACCAAAA 57.034 29.630 5.67 0.00 36.09 2.44
145 146 9.883142 TTGTTCAGAATACCAAAATTTGTTCTT 57.117 25.926 4.92 0.00 0.00 2.52
179 180 9.522804 AAAACTGAATTACAAAGTTTATTCGCA 57.477 25.926 0.85 0.00 41.93 5.10
180 181 9.691362 AAACTGAATTACAAAGTTTATTCGCAT 57.309 25.926 0.00 0.00 41.19 4.73
181 182 9.691362 AACTGAATTACAAAGTTTATTCGCATT 57.309 25.926 5.53 0.00 29.98 3.56
182 183 9.691362 ACTGAATTACAAAGTTTATTCGCATTT 57.309 25.926 5.53 0.00 31.29 2.32
183 184 9.941991 CTGAATTACAAAGTTTATTCGCATTTG 57.058 29.630 5.53 0.00 37.00 2.32
184 185 9.684448 TGAATTACAAAGTTTATTCGCATTTGA 57.316 25.926 3.23 0.00 35.40 2.69
242 243 9.967346 TGTTTTAAAACATATCGGACATTTCAA 57.033 25.926 26.05 1.36 43.45 2.69
255 256 8.370493 TCGGACATTTCAAAAATAAAATTGCA 57.630 26.923 0.00 0.00 0.00 4.08
256 257 8.830580 TCGGACATTTCAAAAATAAAATTGCAA 58.169 25.926 0.00 0.00 0.00 4.08
257 258 9.609950 CGGACATTTCAAAAATAAAATTGCAAT 57.390 25.926 5.99 5.99 0.00 3.56
306 307 9.696917 AAATCAAACATGTTTTCTAATCTGGAC 57.303 29.630 21.10 0.00 0.00 4.02
307 308 6.898041 TCAAACATGTTTTCTAATCTGGACG 58.102 36.000 21.10 5.69 0.00 4.79
308 309 4.946784 ACATGTTTTCTAATCTGGACGC 57.053 40.909 0.00 0.00 0.00 5.19
309 310 4.579869 ACATGTTTTCTAATCTGGACGCT 58.420 39.130 0.00 0.00 0.00 5.07
310 311 4.393062 ACATGTTTTCTAATCTGGACGCTG 59.607 41.667 0.00 0.00 0.00 5.18
311 312 4.002906 TGTTTTCTAATCTGGACGCTGT 57.997 40.909 0.00 0.00 0.00 4.40
312 313 3.745975 TGTTTTCTAATCTGGACGCTGTG 59.254 43.478 0.00 0.00 0.00 3.66
313 314 2.010145 TTCTAATCTGGACGCTGTGC 57.990 50.000 0.00 0.00 0.00 4.57
314 315 1.186200 TCTAATCTGGACGCTGTGCT 58.814 50.000 2.49 0.00 0.00 4.40
315 316 2.375146 TCTAATCTGGACGCTGTGCTA 58.625 47.619 2.49 0.00 0.00 3.49
316 317 2.959030 TCTAATCTGGACGCTGTGCTAT 59.041 45.455 2.49 0.00 0.00 2.97
317 318 1.945387 AATCTGGACGCTGTGCTATG 58.055 50.000 2.49 0.00 0.00 2.23
318 319 0.826715 ATCTGGACGCTGTGCTATGT 59.173 50.000 2.49 0.00 0.00 2.29
319 320 0.608130 TCTGGACGCTGTGCTATGTT 59.392 50.000 2.49 0.00 0.00 2.71
320 321 1.002366 CTGGACGCTGTGCTATGTTC 58.998 55.000 2.49 0.00 0.00 3.18
321 322 0.608130 TGGACGCTGTGCTATGTTCT 59.392 50.000 2.49 0.00 0.00 3.01
322 323 1.001974 TGGACGCTGTGCTATGTTCTT 59.998 47.619 2.49 0.00 0.00 2.52
323 324 2.232696 TGGACGCTGTGCTATGTTCTTA 59.767 45.455 2.49 0.00 0.00 2.10
324 325 3.259064 GGACGCTGTGCTATGTTCTTAA 58.741 45.455 0.00 0.00 0.00 1.85
325 326 3.682858 GGACGCTGTGCTATGTTCTTAAA 59.317 43.478 0.00 0.00 0.00 1.52
326 327 4.332819 GGACGCTGTGCTATGTTCTTAAAT 59.667 41.667 0.00 0.00 0.00 1.40
327 328 5.221891 ACGCTGTGCTATGTTCTTAAATG 57.778 39.130 0.00 0.00 0.00 2.32
328 329 4.695455 ACGCTGTGCTATGTTCTTAAATGT 59.305 37.500 0.00 0.00 0.00 2.71
329 330 5.181245 ACGCTGTGCTATGTTCTTAAATGTT 59.819 36.000 0.00 0.00 0.00 2.71
330 331 6.086222 CGCTGTGCTATGTTCTTAAATGTTT 58.914 36.000 0.00 0.00 0.00 2.83
331 332 6.249260 CGCTGTGCTATGTTCTTAAATGTTTC 59.751 38.462 0.00 0.00 0.00 2.78
332 333 7.308435 GCTGTGCTATGTTCTTAAATGTTTCT 58.692 34.615 0.00 0.00 0.00 2.52
333 334 7.272084 GCTGTGCTATGTTCTTAAATGTTTCTG 59.728 37.037 0.00 0.00 0.00 3.02
334 335 7.592938 TGTGCTATGTTCTTAAATGTTTCTGG 58.407 34.615 0.00 0.00 0.00 3.86
335 336 7.230510 TGTGCTATGTTCTTAAATGTTTCTGGT 59.769 33.333 0.00 0.00 0.00 4.00
336 337 7.538678 GTGCTATGTTCTTAAATGTTTCTGGTG 59.461 37.037 0.00 0.00 0.00 4.17
337 338 7.230510 TGCTATGTTCTTAAATGTTTCTGGTGT 59.769 33.333 0.00 0.00 0.00 4.16
338 339 8.726988 GCTATGTTCTTAAATGTTTCTGGTGTA 58.273 33.333 0.00 0.00 0.00 2.90
340 341 8.691661 ATGTTCTTAAATGTTTCTGGTGTACT 57.308 30.769 0.00 0.00 0.00 2.73
341 342 9.787435 ATGTTCTTAAATGTTTCTGGTGTACTA 57.213 29.630 0.00 0.00 0.00 1.82
342 343 9.616156 TGTTCTTAAATGTTTCTGGTGTACTAA 57.384 29.630 0.00 0.00 0.00 2.24
348 349 8.458573 AAATGTTTCTGGTGTACTAATTGTCA 57.541 30.769 0.00 0.00 0.00 3.58
349 350 8.458573 AATGTTTCTGGTGTACTAATTGTCAA 57.541 30.769 0.00 0.00 0.00 3.18
350 351 8.635765 ATGTTTCTGGTGTACTAATTGTCAAT 57.364 30.769 0.00 0.00 0.00 2.57
351 352 9.733556 ATGTTTCTGGTGTACTAATTGTCAATA 57.266 29.630 0.00 0.00 0.00 1.90
352 353 9.562408 TGTTTCTGGTGTACTAATTGTCAATAA 57.438 29.630 0.00 0.00 0.00 1.40
353 354 9.821662 GTTTCTGGTGTACTAATTGTCAATAAC 57.178 33.333 0.00 0.00 0.00 1.89
354 355 9.562408 TTTCTGGTGTACTAATTGTCAATAACA 57.438 29.630 0.00 0.00 35.59 2.41
367 368 6.471233 TGTCAATAACAATTGTTGGTTGGA 57.529 33.333 30.24 21.86 38.90 3.53
368 369 6.511416 TGTCAATAACAATTGTTGGTTGGAG 58.489 36.000 30.24 17.64 38.90 3.86
369 370 5.405269 GTCAATAACAATTGTTGGTTGGAGC 59.595 40.000 30.24 22.59 38.90 4.70
370 371 2.507339 AACAATTGTTGGTTGGAGCG 57.493 45.000 22.71 0.00 36.80 5.03
371 372 1.398692 ACAATTGTTGGTTGGAGCGT 58.601 45.000 4.92 0.00 34.12 5.07
372 373 2.577700 ACAATTGTTGGTTGGAGCGTA 58.422 42.857 4.92 0.00 34.12 4.42
373 374 2.552315 ACAATTGTTGGTTGGAGCGTAG 59.448 45.455 4.92 0.00 34.12 3.51
374 375 1.821216 ATTGTTGGTTGGAGCGTAGG 58.179 50.000 0.00 0.00 0.00 3.18
375 376 0.250553 TTGTTGGTTGGAGCGTAGGG 60.251 55.000 0.00 0.00 0.00 3.53
376 377 1.376812 GTTGGTTGGAGCGTAGGGG 60.377 63.158 0.00 0.00 0.00 4.79
377 378 3.262448 TTGGTTGGAGCGTAGGGGC 62.262 63.158 0.00 0.00 0.00 5.80
379 380 2.125106 GTTGGAGCGTAGGGGCTG 60.125 66.667 0.00 0.00 44.93 4.85
380 381 2.606519 TTGGAGCGTAGGGGCTGT 60.607 61.111 0.00 0.00 44.93 4.40
381 382 2.656069 TTGGAGCGTAGGGGCTGTC 61.656 63.158 0.00 0.00 44.93 3.51
382 383 3.075005 GGAGCGTAGGGGCTGTCA 61.075 66.667 0.00 0.00 44.93 3.58
383 384 2.435693 GGAGCGTAGGGGCTGTCAT 61.436 63.158 0.00 0.00 44.93 3.06
384 385 1.522569 GAGCGTAGGGGCTGTCATT 59.477 57.895 0.00 0.00 44.93 2.57
385 386 0.107654 GAGCGTAGGGGCTGTCATTT 60.108 55.000 0.00 0.00 44.93 2.32
386 387 0.107654 AGCGTAGGGGCTGTCATTTC 60.108 55.000 0.00 0.00 42.86 2.17
387 388 1.095807 GCGTAGGGGCTGTCATTTCC 61.096 60.000 0.00 0.00 0.00 3.13
388 389 0.541863 CGTAGGGGCTGTCATTTCCT 59.458 55.000 0.00 0.00 0.00 3.36
389 390 1.760613 CGTAGGGGCTGTCATTTCCTA 59.239 52.381 0.00 0.00 0.00 2.94
390 391 2.169769 CGTAGGGGCTGTCATTTCCTAA 59.830 50.000 0.00 0.00 32.60 2.69
391 392 3.181454 CGTAGGGGCTGTCATTTCCTAAT 60.181 47.826 0.00 0.00 32.60 1.73
392 393 4.039973 CGTAGGGGCTGTCATTTCCTAATA 59.960 45.833 0.00 0.00 32.60 0.98
393 394 5.280011 CGTAGGGGCTGTCATTTCCTAATAT 60.280 44.000 0.00 0.00 32.60 1.28
394 395 4.990526 AGGGGCTGTCATTTCCTAATATG 58.009 43.478 0.00 0.00 0.00 1.78
395 396 4.416848 AGGGGCTGTCATTTCCTAATATGT 59.583 41.667 0.00 0.00 0.00 2.29
396 397 4.520492 GGGGCTGTCATTTCCTAATATGTG 59.480 45.833 0.00 0.00 0.00 3.21
397 398 4.520492 GGGCTGTCATTTCCTAATATGTGG 59.480 45.833 0.00 0.00 0.00 4.17
398 399 5.133221 GGCTGTCATTTCCTAATATGTGGT 58.867 41.667 0.00 0.00 0.00 4.16
399 400 6.296026 GGCTGTCATTTCCTAATATGTGGTA 58.704 40.000 0.00 0.00 0.00 3.25
400 401 6.770785 GGCTGTCATTTCCTAATATGTGGTAA 59.229 38.462 0.00 0.00 0.00 2.85
401 402 7.255139 GGCTGTCATTTCCTAATATGTGGTAAC 60.255 40.741 0.00 0.00 0.00 2.50
402 403 7.518370 GCTGTCATTTCCTAATATGTGGTAACG 60.518 40.741 0.00 0.00 42.51 3.18
403 404 7.557724 TGTCATTTCCTAATATGTGGTAACGA 58.442 34.615 0.00 0.00 42.51 3.85
404 405 7.709182 TGTCATTTCCTAATATGTGGTAACGAG 59.291 37.037 0.00 0.00 42.51 4.18
405 406 7.924412 GTCATTTCCTAATATGTGGTAACGAGA 59.076 37.037 0.00 0.00 42.51 4.04
406 407 8.647796 TCATTTCCTAATATGTGGTAACGAGAT 58.352 33.333 0.00 0.00 42.51 2.75
407 408 8.926710 CATTTCCTAATATGTGGTAACGAGATC 58.073 37.037 0.00 0.00 42.51 2.75
408 409 7.591421 TTCCTAATATGTGGTAACGAGATCA 57.409 36.000 0.00 0.00 42.51 2.92
409 410 7.591421 TCCTAATATGTGGTAACGAGATCAA 57.409 36.000 0.00 0.00 42.51 2.57
410 411 8.190326 TCCTAATATGTGGTAACGAGATCAAT 57.810 34.615 0.00 0.00 42.51 2.57
411 412 8.647796 TCCTAATATGTGGTAACGAGATCAATT 58.352 33.333 0.00 0.00 42.51 2.32
412 413 9.273016 CCTAATATGTGGTAACGAGATCAATTT 57.727 33.333 0.00 0.00 42.51 1.82
415 416 9.787532 AATATGTGGTAACGAGATCAATTTTTG 57.212 29.630 0.00 0.00 42.51 2.44
416 417 6.627395 TGTGGTAACGAGATCAATTTTTGT 57.373 33.333 0.00 0.00 42.51 2.83
417 418 6.434596 TGTGGTAACGAGATCAATTTTTGTG 58.565 36.000 0.00 0.00 42.51 3.33
418 419 6.038825 TGTGGTAACGAGATCAATTTTTGTGT 59.961 34.615 0.00 0.00 42.51 3.72
419 420 7.226918 TGTGGTAACGAGATCAATTTTTGTGTA 59.773 33.333 0.00 0.00 42.51 2.90
420 421 7.744715 GTGGTAACGAGATCAATTTTTGTGTAG 59.255 37.037 0.00 0.00 42.51 2.74
421 422 6.741358 GGTAACGAGATCAATTTTTGTGTAGC 59.259 38.462 0.00 0.00 0.00 3.58
422 423 5.940192 ACGAGATCAATTTTTGTGTAGCA 57.060 34.783 0.00 0.00 0.00 3.49
423 424 5.689819 ACGAGATCAATTTTTGTGTAGCAC 58.310 37.500 0.00 0.00 34.56 4.40
424 425 5.238432 ACGAGATCAATTTTTGTGTAGCACA 59.762 36.000 0.00 0.00 43.02 4.57
435 436 1.566404 TGTAGCACACACGTCACTTG 58.434 50.000 0.00 0.00 30.04 3.16
436 437 0.232303 GTAGCACACACGTCACTTGC 59.768 55.000 0.00 0.00 0.00 4.01
437 438 0.104120 TAGCACACACGTCACTTGCT 59.896 50.000 13.29 13.29 45.37 3.91
438 439 0.744414 AGCACACACGTCACTTGCTT 60.744 50.000 4.96 0.00 40.66 3.91
439 440 0.098728 GCACACACGTCACTTGCTTT 59.901 50.000 0.00 0.00 0.00 3.51
440 441 1.467374 GCACACACGTCACTTGCTTTT 60.467 47.619 0.00 0.00 0.00 2.27
441 442 2.862512 CACACACGTCACTTGCTTTTT 58.137 42.857 0.00 0.00 0.00 1.94
463 464 6.612247 TTTTTGTCACGCTTCTATCAGAAA 57.388 33.333 0.00 0.00 33.19 2.52
464 465 6.612247 TTTTGTCACGCTTCTATCAGAAAA 57.388 33.333 0.00 0.00 33.19 2.29
465 466 6.612247 TTTGTCACGCTTCTATCAGAAAAA 57.388 33.333 0.00 0.00 33.19 1.94
466 467 5.591643 TGTCACGCTTCTATCAGAAAAAC 57.408 39.130 0.00 0.00 33.19 2.43
467 468 5.053811 TGTCACGCTTCTATCAGAAAAACA 58.946 37.500 0.00 0.00 33.19 2.83
468 469 5.525745 TGTCACGCTTCTATCAGAAAAACAA 59.474 36.000 0.00 0.00 33.19 2.83
469 470 6.037720 TGTCACGCTTCTATCAGAAAAACAAA 59.962 34.615 0.00 0.00 33.19 2.83
470 471 6.910433 GTCACGCTTCTATCAGAAAAACAAAA 59.090 34.615 0.00 0.00 33.19 2.44
471 472 7.112148 GTCACGCTTCTATCAGAAAAACAAAAG 59.888 37.037 0.00 0.00 33.19 2.27
472 473 7.011950 TCACGCTTCTATCAGAAAAACAAAAGA 59.988 33.333 0.00 0.00 33.19 2.52
473 474 7.805071 CACGCTTCTATCAGAAAAACAAAAGAT 59.195 33.333 0.00 0.00 33.19 2.40
474 475 8.999431 ACGCTTCTATCAGAAAAACAAAAGATA 58.001 29.630 0.00 0.00 33.19 1.98
475 476 9.825972 CGCTTCTATCAGAAAAACAAAAGATAA 57.174 29.630 0.00 0.00 33.19 1.75
530 531 6.852420 TCTAGATGTTATATAGCCACACCC 57.148 41.667 0.00 0.00 0.00 4.61
531 532 6.562228 TCTAGATGTTATATAGCCACACCCT 58.438 40.000 0.00 0.00 0.00 4.34
532 533 7.016914 TCTAGATGTTATATAGCCACACCCTT 58.983 38.462 0.00 0.00 0.00 3.95
533 534 6.515512 AGATGTTATATAGCCACACCCTTT 57.484 37.500 0.00 0.00 0.00 3.11
534 535 6.534634 AGATGTTATATAGCCACACCCTTTC 58.465 40.000 0.00 0.00 0.00 2.62
535 536 5.968676 TGTTATATAGCCACACCCTTTCT 57.031 39.130 0.00 0.00 0.00 2.52
536 537 7.512746 AGATGTTATATAGCCACACCCTTTCTA 59.487 37.037 0.00 0.00 0.00 2.10
537 538 7.440505 TGTTATATAGCCACACCCTTTCTAA 57.559 36.000 0.00 0.00 0.00 2.10
538 539 7.863722 TGTTATATAGCCACACCCTTTCTAAA 58.136 34.615 0.00 0.00 0.00 1.85
539 540 8.330247 TGTTATATAGCCACACCCTTTCTAAAA 58.670 33.333 0.00 0.00 0.00 1.52
540 541 9.350951 GTTATATAGCCACACCCTTTCTAAAAT 57.649 33.333 0.00 0.00 0.00 1.82
541 542 9.569122 TTATATAGCCACACCCTTTCTAAAATC 57.431 33.333 0.00 0.00 0.00 2.17
542 543 4.112634 AGCCACACCCTTTCTAAAATCA 57.887 40.909 0.00 0.00 0.00 2.57
543 544 4.082125 AGCCACACCCTTTCTAAAATCAG 58.918 43.478 0.00 0.00 0.00 2.90
544 545 3.826729 GCCACACCCTTTCTAAAATCAGT 59.173 43.478 0.00 0.00 0.00 3.41
545 546 4.082733 GCCACACCCTTTCTAAAATCAGTC 60.083 45.833 0.00 0.00 0.00 3.51
546 547 5.070001 CCACACCCTTTCTAAAATCAGTCA 58.930 41.667 0.00 0.00 0.00 3.41
547 548 5.182001 CCACACCCTTTCTAAAATCAGTCAG 59.818 44.000 0.00 0.00 0.00 3.51
548 549 4.762251 ACACCCTTTCTAAAATCAGTCAGC 59.238 41.667 0.00 0.00 0.00 4.26
549 550 5.006386 CACCCTTTCTAAAATCAGTCAGCT 58.994 41.667 0.00 0.00 0.00 4.24
550 551 5.006386 ACCCTTTCTAAAATCAGTCAGCTG 58.994 41.667 7.63 7.63 43.87 4.24
558 559 2.584673 TCAGTCAGCTGACCCTAGC 58.415 57.895 37.09 16.51 45.94 3.42
559 560 0.972983 TCAGTCAGCTGACCCTAGCC 60.973 60.000 37.09 15.79 45.94 3.93
560 561 1.079256 AGTCAGCTGACCCTAGCCA 59.921 57.895 37.09 2.26 45.85 4.75
561 562 1.219393 GTCAGCTGACCCTAGCCAC 59.781 63.158 32.55 8.09 44.76 5.01
562 563 2.185350 CAGCTGACCCTAGCCACG 59.815 66.667 8.42 0.00 44.76 4.94
563 564 3.775654 AGCTGACCCTAGCCACGC 61.776 66.667 0.00 0.00 44.76 5.34
564 565 4.840005 GCTGACCCTAGCCACGCC 62.840 72.222 0.00 0.00 37.73 5.68
565 566 4.162690 CTGACCCTAGCCACGCCC 62.163 72.222 0.00 0.00 0.00 6.13
606 607 0.380733 TAGCTATGCACGACGTGAGG 59.619 55.000 31.08 16.61 35.23 3.86
651 654 3.480470 ACAACTCATCACACCCTTGAAG 58.520 45.455 0.00 0.00 0.00 3.02
697 1251 8.467598 AGCTAGTATTTCTGATCTCGTTAACAA 58.532 33.333 6.39 0.00 0.00 2.83
706 1264 6.926826 TCTGATCTCGTTAACAAAACTTAGCA 59.073 34.615 6.39 0.00 0.00 3.49
736 1340 3.991999 GCAGCAAGCTCATGTCCA 58.008 55.556 0.00 0.00 41.15 4.02
742 1346 1.202110 GCAAGCTCATGTCCAATCGTG 60.202 52.381 0.00 0.00 0.00 4.35
767 1371 7.333423 TGCACATACAAATTCTGAGGTTACTAC 59.667 37.037 0.00 0.00 0.00 2.73
768 1372 7.333423 GCACATACAAATTCTGAGGTTACTACA 59.667 37.037 0.00 0.00 0.00 2.74
770 1374 9.787435 ACATACAAATTCTGAGGTTACTACAAA 57.213 29.630 0.00 0.00 0.00 2.83
781 1385 9.245962 CTGAGGTTACTACAAATAGTATTTCCG 57.754 37.037 5.10 0.00 42.31 4.30
782 1386 8.970020 TGAGGTTACTACAAATAGTATTTCCGA 58.030 33.333 5.10 0.00 42.31 4.55
876 1530 1.003116 GCCGATGATGAGTTGTCATGC 60.003 52.381 0.00 0.00 43.92 4.06
882 1536 1.131883 GATGAGTTGTCATGCACAGGC 59.868 52.381 0.00 0.00 43.92 4.85
892 1546 2.166870 TCATGCACAGGCCAATTCATTC 59.833 45.455 5.01 0.00 40.13 2.67
893 1547 1.630223 TGCACAGGCCAATTCATTCA 58.370 45.000 5.01 0.00 40.13 2.57
894 1548 1.969208 TGCACAGGCCAATTCATTCAA 59.031 42.857 5.01 0.00 40.13 2.69
895 1549 2.568062 TGCACAGGCCAATTCATTCAAT 59.432 40.909 5.01 0.00 40.13 2.57
896 1550 3.008157 TGCACAGGCCAATTCATTCAATT 59.992 39.130 5.01 0.00 40.13 2.32
897 1551 4.222366 TGCACAGGCCAATTCATTCAATTA 59.778 37.500 5.01 0.00 40.13 1.40
898 1552 5.104859 TGCACAGGCCAATTCATTCAATTAT 60.105 36.000 5.01 0.00 40.13 1.28
900 1554 6.575267 CACAGGCCAATTCATTCAATTATGA 58.425 36.000 5.01 0.00 32.48 2.15
902 1556 6.381994 ACAGGCCAATTCATTCAATTATGAGT 59.618 34.615 5.01 0.00 36.78 3.41
903 1557 6.700081 CAGGCCAATTCATTCAATTATGAGTG 59.300 38.462 5.01 0.00 42.81 3.51
904 1558 5.464389 GGCCAATTCATTCAATTATGAGTGC 59.536 40.000 0.00 0.00 41.61 4.40
905 1559 6.044046 GCCAATTCATTCAATTATGAGTGCA 58.956 36.000 0.00 0.00 41.61 4.57
906 1560 6.535865 GCCAATTCATTCAATTATGAGTGCAA 59.464 34.615 0.00 0.00 41.61 4.08
920 1584 0.302890 GTGCAATTGATCTCTCCGCG 59.697 55.000 10.34 0.00 0.00 6.46
940 1604 3.615592 GCGGCTATATAAACACCGATCCA 60.616 47.826 14.11 0.00 46.71 3.41
941 1605 4.755411 CGGCTATATAAACACCGATCCAT 58.245 43.478 7.15 0.00 46.71 3.41
942 1606 4.804139 CGGCTATATAAACACCGATCCATC 59.196 45.833 7.15 0.00 46.71 3.51
943 1607 5.116882 GGCTATATAAACACCGATCCATCC 58.883 45.833 0.00 0.00 0.00 3.51
963 1627 2.357075 CTCGAGTAGTAGCCAGACACA 58.643 52.381 3.62 0.00 0.00 3.72
964 1628 2.946329 CTCGAGTAGTAGCCAGACACAT 59.054 50.000 3.62 0.00 0.00 3.21
965 1629 4.127907 CTCGAGTAGTAGCCAGACACATA 58.872 47.826 3.62 0.00 0.00 2.29
966 1630 4.715713 TCGAGTAGTAGCCAGACACATAT 58.284 43.478 0.00 0.00 0.00 1.78
987 1651 2.706339 TACCTACCTCGTCTCAGTCC 57.294 55.000 0.00 0.00 0.00 3.85
995 1662 2.356330 CCTCGTCTCAGTCCCTAGTCTT 60.356 54.545 0.00 0.00 0.00 3.01
1632 2311 3.968568 CCGCAACAGCAGCAGCAA 61.969 61.111 3.17 0.00 45.49 3.91
1664 2343 1.468520 CGGTACCTTCGAGTTCGGTAA 59.531 52.381 10.90 0.00 40.29 2.85
1806 2491 4.820716 GGAAGTGGGATGAAGATGAATGAG 59.179 45.833 0.00 0.00 0.00 2.90
1845 2530 1.550976 GAGTCCATCCGTTCTTCCAGT 59.449 52.381 0.00 0.00 0.00 4.00
1846 2531 1.276421 AGTCCATCCGTTCTTCCAGTG 59.724 52.381 0.00 0.00 0.00 3.66
1928 2614 4.331992 GCCGTTGATGATGATCCATCTATG 59.668 45.833 11.69 9.68 42.49 2.23
1985 2677 5.858159 TTTTCGCTTTTATTGTCGTTGTG 57.142 34.783 0.00 0.00 0.00 3.33
1986 2678 4.539509 TTCGCTTTTATTGTCGTTGTGT 57.460 36.364 0.00 0.00 0.00 3.72
1987 2679 4.539509 TCGCTTTTATTGTCGTTGTGTT 57.460 36.364 0.00 0.00 0.00 3.32
1988 2680 4.275662 TCGCTTTTATTGTCGTTGTGTTG 58.724 39.130 0.00 0.00 0.00 3.33
1989 2681 4.032355 CGCTTTTATTGTCGTTGTGTTGT 58.968 39.130 0.00 0.00 0.00 3.32
1990 2682 4.086327 CGCTTTTATTGTCGTTGTGTTGTG 60.086 41.667 0.00 0.00 0.00 3.33
2028 2720 8.694540 CATATTGGGTCCTTCAATTGTGATTTA 58.305 33.333 5.13 0.00 36.40 1.40
2065 2757 8.405531 CGAGATTAATGAAATAAAAGCCCTTGA 58.594 33.333 0.00 0.00 0.00 3.02
2068 2760 9.264719 GATTAATGAAATAAAAGCCCTTGATGG 57.735 33.333 0.00 0.00 0.00 3.51
2069 2761 6.872585 AATGAAATAAAAGCCCTTGATGGA 57.127 33.333 0.00 0.00 38.35 3.41
2070 2762 5.659440 TGAAATAAAAGCCCTTGATGGAC 57.341 39.130 0.00 0.00 38.35 4.02
2071 2763 5.083122 TGAAATAAAAGCCCTTGATGGACA 58.917 37.500 0.00 0.00 38.35 4.02
2072 2764 5.047377 TGAAATAAAAGCCCTTGATGGACAC 60.047 40.000 0.00 0.00 38.35 3.67
2073 2765 1.247567 AAAAGCCCTTGATGGACACG 58.752 50.000 0.00 0.00 38.35 4.49
2074 2766 0.400213 AAAGCCCTTGATGGACACGA 59.600 50.000 0.00 0.00 38.35 4.35
2075 2767 0.400213 AAGCCCTTGATGGACACGAA 59.600 50.000 0.00 0.00 38.35 3.85
2076 2768 0.036010 AGCCCTTGATGGACACGAAG 60.036 55.000 0.00 0.00 38.35 3.79
2077 2769 1.026718 GCCCTTGATGGACACGAAGG 61.027 60.000 0.00 0.00 38.35 3.46
2078 2770 0.324943 CCCTTGATGGACACGAAGGT 59.675 55.000 0.00 0.00 38.35 3.50
2108 2800 2.732412 CACTATAGATGAGTGGGCCG 57.268 55.000 6.78 0.00 40.58 6.13
2164 2856 4.814041 GCCCTCTCCTCCAGCCCT 62.814 72.222 0.00 0.00 0.00 5.19
2168 2860 4.095400 TCTCCTCCAGCCCTCCCC 62.095 72.222 0.00 0.00 0.00 4.81
2220 2912 2.038329 CCACAGAGGACCCCGGTA 59.962 66.667 0.00 0.00 41.22 4.02
2243 2935 3.914713 CCCCCAACCTGCAACCCT 61.915 66.667 0.00 0.00 0.00 4.34
2270 2962 0.323908 AAGCTCTCGACCCTAGCTGT 60.324 55.000 0.00 0.00 45.61 4.40
2278 2970 3.760035 CCCTAGCTGTGACGCCGT 61.760 66.667 0.00 0.00 0.00 5.68
2279 2971 2.261671 CCTAGCTGTGACGCCGTT 59.738 61.111 0.00 0.00 0.00 4.44
2281 2973 0.525668 CCTAGCTGTGACGCCGTTAG 60.526 60.000 0.00 0.00 0.00 2.34
2283 2975 1.868987 TAGCTGTGACGCCGTTAGCA 61.869 55.000 19.20 6.92 44.04 3.49
2351 3043 2.217510 TCCTTCGCCAGTTCTACTCT 57.782 50.000 0.00 0.00 0.00 3.24
2378 3070 1.153628 CTTCGATCCCCGCTCGTTT 60.154 57.895 0.00 0.00 37.40 3.60
2390 3082 1.627550 GCTCGTTTCCTTCGTGCTCC 61.628 60.000 0.00 0.00 42.05 4.70
2420 3112 2.052047 AACTGTGGTTCACCCCTCCG 62.052 60.000 0.00 0.00 32.73 4.63
2442 3134 3.223674 TCCTGTCCCCTTGTTTTTCTC 57.776 47.619 0.00 0.00 0.00 2.87
2446 3138 0.476771 TCCCCTTGTTTTTCTCCGCT 59.523 50.000 0.00 0.00 0.00 5.52
2459 3151 2.125673 CCGCTTCGTGTTCGGGAT 60.126 61.111 0.00 0.00 39.52 3.85
2474 3166 4.451629 TCGGGATCTTGTCAACTACTTC 57.548 45.455 0.00 0.00 0.00 3.01
2479 3171 6.127703 CGGGATCTTGTCAACTACTTCTTCTA 60.128 42.308 0.00 0.00 0.00 2.10
2513 3205 1.407258 CAGATCGAAGTCCTCCAGGTC 59.593 57.143 0.00 0.00 36.34 3.85
2555 3247 2.045926 CTTGCTAGCCCGGCTGTT 60.046 61.111 22.95 0.00 40.10 3.16
2569 3261 0.031994 GCTGTTGCCCGTTTCATTGT 59.968 50.000 0.00 0.00 0.00 2.71
2576 3268 1.268352 GCCCGTTTCATTGTTGCTGTA 59.732 47.619 0.00 0.00 0.00 2.74
2585 3277 1.028905 TTGTTGCTGTAGGTGTTGCC 58.971 50.000 0.00 0.00 37.58 4.52
2608 3300 0.610232 ATGGCCTTGGTCAAGCTGAC 60.610 55.000 3.32 7.52 46.23 3.51
2630 3322 1.300080 GCATCTCTCGCTCCAGCTC 60.300 63.158 0.00 0.00 39.32 4.09
2669 3361 0.942884 GTCTTCGGACCGTTGACCAC 60.943 60.000 22.17 7.67 38.93 4.16
2684 3376 1.677966 CCACGAAGGGGAGACGAGA 60.678 63.158 0.00 0.00 0.00 4.04
2687 3379 1.744368 CGAAGGGGAGACGAGACGA 60.744 63.158 0.00 0.00 0.00 4.20
2693 3385 1.514443 GGAGACGAGACGAAAGCGG 60.514 63.158 0.00 0.00 43.17 5.52
2709 3401 1.978617 CGGCCTGCATTCAAACCCT 60.979 57.895 0.00 0.00 0.00 4.34
2712 3404 1.544724 GCCTGCATTCAAACCCTGTA 58.455 50.000 0.00 0.00 0.00 2.74
2713 3405 1.474077 GCCTGCATTCAAACCCTGTAG 59.526 52.381 0.00 0.00 0.00 2.74
2717 3409 1.202348 GCATTCAAACCCTGTAGTGGC 59.798 52.381 0.00 0.00 0.00 5.01
2718 3410 1.818674 CATTCAAACCCTGTAGTGGCC 59.181 52.381 0.00 0.00 0.00 5.36
2721 3413 0.536460 CAAACCCTGTAGTGGCCGTT 60.536 55.000 0.00 0.00 0.00 4.44
2723 3415 2.125673 CCCTGTAGTGGCCGTTCG 60.126 66.667 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.893634 TTGGGAGACACGAATAAATTTATTCTA 57.106 29.630 32.77 13.47 44.23 2.10
17 18 8.801882 TTGGGAGACACGAATAAATTTATTCT 57.198 30.769 32.77 21.86 44.23 2.40
18 19 9.849166 TTTTGGGAGACACGAATAAATTTATTC 57.151 29.630 29.34 29.34 43.41 1.75
42 43 8.491331 ACAATTTTTAGAGTGTGCACATTTTT 57.509 26.923 24.69 13.46 0.00 1.94
43 44 8.389603 CAACAATTTTTAGAGTGTGCACATTTT 58.610 29.630 24.69 16.75 0.00 1.82
44 45 7.763528 TCAACAATTTTTAGAGTGTGCACATTT 59.236 29.630 24.69 14.75 0.00 2.32
45 46 7.264221 TCAACAATTTTTAGAGTGTGCACATT 58.736 30.769 24.69 20.07 0.00 2.71
46 47 6.804677 TCAACAATTTTTAGAGTGTGCACAT 58.195 32.000 24.69 12.11 0.00 3.21
47 48 6.201226 TCAACAATTTTTAGAGTGTGCACA 57.799 33.333 17.42 17.42 0.00 4.57
48 49 5.687285 CCTCAACAATTTTTAGAGTGTGCAC 59.313 40.000 10.75 10.75 0.00 4.57
49 50 5.221224 CCCTCAACAATTTTTAGAGTGTGCA 60.221 40.000 0.00 0.00 0.00 4.57
50 51 5.009610 TCCCTCAACAATTTTTAGAGTGTGC 59.990 40.000 0.00 0.00 0.00 4.57
51 52 6.633500 TCCCTCAACAATTTTTAGAGTGTG 57.367 37.500 0.00 0.00 0.00 3.82
52 53 7.234355 AGATCCCTCAACAATTTTTAGAGTGT 58.766 34.615 0.00 0.00 0.00 3.55
53 54 7.693969 AGATCCCTCAACAATTTTTAGAGTG 57.306 36.000 0.00 0.00 0.00 3.51
54 55 9.807921 TTAAGATCCCTCAACAATTTTTAGAGT 57.192 29.630 0.00 0.00 0.00 3.24
81 82 9.420551 ACAAAATTTGAAAACATGCACAATTTT 57.579 22.222 13.19 0.00 31.74 1.82
82 83 8.983307 ACAAAATTTGAAAACATGCACAATTT 57.017 23.077 13.19 0.00 0.00 1.82
83 84 8.983307 AACAAAATTTGAAAACATGCACAATT 57.017 23.077 13.19 0.00 0.00 2.32
84 85 7.428761 CGAACAAAATTTGAAAACATGCACAAT 59.571 29.630 13.19 0.00 0.00 2.71
85 86 6.740002 CGAACAAAATTTGAAAACATGCACAA 59.260 30.769 13.19 0.00 0.00 3.33
86 87 6.091305 TCGAACAAAATTTGAAAACATGCACA 59.909 30.769 13.19 0.00 0.00 4.57
87 88 6.473521 TCGAACAAAATTTGAAAACATGCAC 58.526 32.000 13.19 0.00 0.00 4.57
88 89 6.533012 TCTCGAACAAAATTTGAAAACATGCA 59.467 30.769 13.19 0.00 0.00 3.96
89 90 6.932051 TCTCGAACAAAATTTGAAAACATGC 58.068 32.000 13.19 0.00 0.00 4.06
90 91 8.806634 TCTTCTCGAACAAAATTTGAAAACATG 58.193 29.630 13.19 0.00 0.00 3.21
91 92 8.925161 TCTTCTCGAACAAAATTTGAAAACAT 57.075 26.923 13.19 0.00 0.00 2.71
92 93 8.749841 TTCTTCTCGAACAAAATTTGAAAACA 57.250 26.923 13.19 0.00 0.00 2.83
96 97 9.364989 ACAATTTCTTCTCGAACAAAATTTGAA 57.635 25.926 13.19 0.00 29.54 2.69
97 98 8.925161 ACAATTTCTTCTCGAACAAAATTTGA 57.075 26.923 13.19 0.00 29.54 2.69
98 99 9.623687 GAACAATTTCTTCTCGAACAAAATTTG 57.376 29.630 3.89 3.89 29.54 2.32
99 100 9.364989 TGAACAATTTCTTCTCGAACAAAATTT 57.635 25.926 5.29 0.00 32.36 1.82
100 101 8.925161 TGAACAATTTCTTCTCGAACAAAATT 57.075 26.923 0.00 0.00 32.36 1.82
101 102 8.405531 TCTGAACAATTTCTTCTCGAACAAAAT 58.594 29.630 0.00 0.00 32.36 1.82
102 103 7.757526 TCTGAACAATTTCTTCTCGAACAAAA 58.242 30.769 0.00 0.00 32.36 2.44
103 104 7.315247 TCTGAACAATTTCTTCTCGAACAAA 57.685 32.000 0.00 0.00 32.36 2.83
104 105 6.918892 TCTGAACAATTTCTTCTCGAACAA 57.081 33.333 0.00 0.00 32.36 2.83
105 106 6.918892 TTCTGAACAATTTCTTCTCGAACA 57.081 33.333 0.00 0.00 32.36 3.18
106 107 7.958025 GGTATTCTGAACAATTTCTTCTCGAAC 59.042 37.037 0.00 0.00 32.36 3.95
107 108 7.659799 TGGTATTCTGAACAATTTCTTCTCGAA 59.340 33.333 0.00 0.00 32.36 3.71
108 109 7.158697 TGGTATTCTGAACAATTTCTTCTCGA 58.841 34.615 0.00 0.00 32.36 4.04
109 110 7.364522 TGGTATTCTGAACAATTTCTTCTCG 57.635 36.000 0.00 0.00 32.36 4.04
110 111 9.965824 TTTTGGTATTCTGAACAATTTCTTCTC 57.034 29.630 0.00 0.00 32.36 2.87
119 120 9.883142 AAGAACAAATTTTGGTATTCTGAACAA 57.117 25.926 13.42 0.00 21.30 2.83
153 154 9.522804 TGCGAATAAACTTTGTAATTCAGTTTT 57.477 25.926 2.10 0.00 34.92 2.43
154 155 9.691362 ATGCGAATAAACTTTGTAATTCAGTTT 57.309 25.926 0.00 0.00 36.74 2.66
155 156 9.691362 AATGCGAATAAACTTTGTAATTCAGTT 57.309 25.926 0.00 0.00 0.00 3.16
156 157 9.691362 AAATGCGAATAAACTTTGTAATTCAGT 57.309 25.926 0.00 0.00 0.00 3.41
157 158 9.941991 CAAATGCGAATAAACTTTGTAATTCAG 57.058 29.630 0.00 0.00 0.00 3.02
158 159 9.684448 TCAAATGCGAATAAACTTTGTAATTCA 57.316 25.926 0.00 0.00 0.00 2.57
229 230 8.997323 TGCAATTTTATTTTTGAAATGTCCGAT 58.003 25.926 0.00 0.00 0.00 4.18
230 231 8.370493 TGCAATTTTATTTTTGAAATGTCCGA 57.630 26.923 0.00 0.00 0.00 4.55
231 232 9.609950 ATTGCAATTTTATTTTTGAAATGTCCG 57.390 25.926 5.99 0.00 31.32 4.79
280 281 9.696917 GTCCAGATTAGAAAACATGTTTGATTT 57.303 29.630 23.93 8.75 31.28 2.17
281 282 8.023128 CGTCCAGATTAGAAAACATGTTTGATT 58.977 33.333 23.93 14.42 32.36 2.57
282 283 7.530010 CGTCCAGATTAGAAAACATGTTTGAT 58.470 34.615 23.93 17.09 32.36 2.57
283 284 6.567701 GCGTCCAGATTAGAAAACATGTTTGA 60.568 38.462 23.93 10.77 32.36 2.69
284 285 5.569059 GCGTCCAGATTAGAAAACATGTTTG 59.431 40.000 23.93 9.82 32.36 2.93
285 286 5.473504 AGCGTCCAGATTAGAAAACATGTTT 59.526 36.000 18.13 18.13 0.00 2.83
286 287 5.003804 AGCGTCCAGATTAGAAAACATGTT 58.996 37.500 4.92 4.92 0.00 2.71
287 288 4.393062 CAGCGTCCAGATTAGAAAACATGT 59.607 41.667 0.00 0.00 0.00 3.21
288 289 4.393062 ACAGCGTCCAGATTAGAAAACATG 59.607 41.667 0.00 0.00 0.00 3.21
289 290 4.393062 CACAGCGTCCAGATTAGAAAACAT 59.607 41.667 0.00 0.00 0.00 2.71
290 291 3.745975 CACAGCGTCCAGATTAGAAAACA 59.254 43.478 0.00 0.00 0.00 2.83
291 292 3.424962 GCACAGCGTCCAGATTAGAAAAC 60.425 47.826 0.00 0.00 0.00 2.43
292 293 2.742053 GCACAGCGTCCAGATTAGAAAA 59.258 45.455 0.00 0.00 0.00 2.29
293 294 2.028112 AGCACAGCGTCCAGATTAGAAA 60.028 45.455 0.00 0.00 0.00 2.52
294 295 1.550524 AGCACAGCGTCCAGATTAGAA 59.449 47.619 0.00 0.00 0.00 2.10
295 296 1.186200 AGCACAGCGTCCAGATTAGA 58.814 50.000 0.00 0.00 0.00 2.10
296 297 2.871182 TAGCACAGCGTCCAGATTAG 57.129 50.000 0.00 0.00 0.00 1.73
297 298 2.430694 ACATAGCACAGCGTCCAGATTA 59.569 45.455 0.00 0.00 0.00 1.75
298 299 1.208052 ACATAGCACAGCGTCCAGATT 59.792 47.619 0.00 0.00 0.00 2.40
299 300 0.826715 ACATAGCACAGCGTCCAGAT 59.173 50.000 0.00 0.00 0.00 2.90
300 301 0.608130 AACATAGCACAGCGTCCAGA 59.392 50.000 0.00 0.00 0.00 3.86
301 302 1.002366 GAACATAGCACAGCGTCCAG 58.998 55.000 0.00 0.00 0.00 3.86
302 303 0.608130 AGAACATAGCACAGCGTCCA 59.392 50.000 0.00 0.00 0.00 4.02
303 304 1.726853 AAGAACATAGCACAGCGTCC 58.273 50.000 0.00 0.00 0.00 4.79
304 305 4.921470 TTTAAGAACATAGCACAGCGTC 57.079 40.909 0.00 0.00 0.00 5.19
305 306 4.695455 ACATTTAAGAACATAGCACAGCGT 59.305 37.500 0.00 0.00 0.00 5.07
306 307 5.221891 ACATTTAAGAACATAGCACAGCG 57.778 39.130 0.00 0.00 0.00 5.18
307 308 7.272084 CAGAAACATTTAAGAACATAGCACAGC 59.728 37.037 0.00 0.00 0.00 4.40
308 309 7.752239 CCAGAAACATTTAAGAACATAGCACAG 59.248 37.037 0.00 0.00 0.00 3.66
309 310 7.230510 ACCAGAAACATTTAAGAACATAGCACA 59.769 33.333 0.00 0.00 0.00 4.57
310 311 7.538678 CACCAGAAACATTTAAGAACATAGCAC 59.461 37.037 0.00 0.00 0.00 4.40
311 312 7.230510 ACACCAGAAACATTTAAGAACATAGCA 59.769 33.333 0.00 0.00 0.00 3.49
312 313 7.593825 ACACCAGAAACATTTAAGAACATAGC 58.406 34.615 0.00 0.00 0.00 2.97
314 315 9.787435 AGTACACCAGAAACATTTAAGAACATA 57.213 29.630 0.00 0.00 0.00 2.29
315 316 8.691661 AGTACACCAGAAACATTTAAGAACAT 57.308 30.769 0.00 0.00 0.00 2.71
316 317 9.616156 TTAGTACACCAGAAACATTTAAGAACA 57.384 29.630 0.00 0.00 0.00 3.18
322 323 9.562408 TGACAATTAGTACACCAGAAACATTTA 57.438 29.630 0.00 0.00 0.00 1.40
323 324 8.458573 TGACAATTAGTACACCAGAAACATTT 57.541 30.769 0.00 0.00 0.00 2.32
324 325 8.458573 TTGACAATTAGTACACCAGAAACATT 57.541 30.769 0.00 0.00 0.00 2.71
325 326 8.635765 ATTGACAATTAGTACACCAGAAACAT 57.364 30.769 0.00 0.00 0.00 2.71
326 327 9.562408 TTATTGACAATTAGTACACCAGAAACA 57.438 29.630 5.89 0.00 0.00 2.83
327 328 9.821662 GTTATTGACAATTAGTACACCAGAAAC 57.178 33.333 5.89 0.00 0.00 2.78
328 329 9.562408 TGTTATTGACAATTAGTACACCAGAAA 57.438 29.630 5.89 0.00 34.69 2.52
329 330 9.562408 TTGTTATTGACAATTAGTACACCAGAA 57.438 29.630 5.89 0.00 43.13 3.02
344 345 6.471233 TCCAACCAACAATTGTTATTGACA 57.529 33.333 30.70 20.91 43.12 3.58
345 346 5.405269 GCTCCAACCAACAATTGTTATTGAC 59.595 40.000 30.70 21.60 43.12 3.18
346 347 5.537188 GCTCCAACCAACAATTGTTATTGA 58.463 37.500 30.70 21.40 43.12 2.57
347 348 4.385447 CGCTCCAACCAACAATTGTTATTG 59.615 41.667 26.21 26.21 45.39 1.90
348 349 4.038642 ACGCTCCAACCAACAATTGTTATT 59.961 37.500 22.87 16.78 36.32 1.40
349 350 3.572255 ACGCTCCAACCAACAATTGTTAT 59.428 39.130 22.87 11.91 36.32 1.89
350 351 2.952978 ACGCTCCAACCAACAATTGTTA 59.047 40.909 22.87 6.29 36.32 2.41
351 352 1.754226 ACGCTCCAACCAACAATTGTT 59.246 42.857 18.13 18.13 39.12 2.83
352 353 1.398692 ACGCTCCAACCAACAATTGT 58.601 45.000 4.92 4.92 0.00 2.71
353 354 2.095263 CCTACGCTCCAACCAACAATTG 60.095 50.000 3.24 3.24 0.00 2.32
354 355 2.159382 CCTACGCTCCAACCAACAATT 58.841 47.619 0.00 0.00 0.00 2.32
355 356 1.613255 CCCTACGCTCCAACCAACAAT 60.613 52.381 0.00 0.00 0.00 2.71
356 357 0.250553 CCCTACGCTCCAACCAACAA 60.251 55.000 0.00 0.00 0.00 2.83
357 358 1.373435 CCCTACGCTCCAACCAACA 59.627 57.895 0.00 0.00 0.00 3.33
358 359 1.376812 CCCCTACGCTCCAACCAAC 60.377 63.158 0.00 0.00 0.00 3.77
359 360 3.074281 CCCCTACGCTCCAACCAA 58.926 61.111 0.00 0.00 0.00 3.67
360 361 3.712907 GCCCCTACGCTCCAACCA 61.713 66.667 0.00 0.00 0.00 3.67
361 362 3.400054 AGCCCCTACGCTCCAACC 61.400 66.667 0.00 0.00 32.06 3.77
362 363 2.125106 CAGCCCCTACGCTCCAAC 60.125 66.667 0.00 0.00 36.82 3.77
363 364 2.606519 ACAGCCCCTACGCTCCAA 60.607 61.111 0.00 0.00 36.82 3.53
364 365 3.075005 GACAGCCCCTACGCTCCA 61.075 66.667 0.00 0.00 36.82 3.86
365 366 1.972660 AATGACAGCCCCTACGCTCC 61.973 60.000 0.00 0.00 36.82 4.70
366 367 0.107654 AAATGACAGCCCCTACGCTC 60.108 55.000 0.00 0.00 36.82 5.03
367 368 0.107654 GAAATGACAGCCCCTACGCT 60.108 55.000 0.00 0.00 40.65 5.07
368 369 1.095807 GGAAATGACAGCCCCTACGC 61.096 60.000 0.00 0.00 0.00 4.42
369 370 0.541863 AGGAAATGACAGCCCCTACG 59.458 55.000 0.00 0.00 0.00 3.51
370 371 3.926058 TTAGGAAATGACAGCCCCTAC 57.074 47.619 0.00 0.00 0.00 3.18
371 372 5.610982 ACATATTAGGAAATGACAGCCCCTA 59.389 40.000 0.00 0.00 0.00 3.53
372 373 4.416848 ACATATTAGGAAATGACAGCCCCT 59.583 41.667 0.00 0.00 0.00 4.79
373 374 4.520492 CACATATTAGGAAATGACAGCCCC 59.480 45.833 0.00 0.00 0.00 5.80
374 375 4.520492 CCACATATTAGGAAATGACAGCCC 59.480 45.833 0.00 0.00 0.00 5.19
375 376 5.133221 ACCACATATTAGGAAATGACAGCC 58.867 41.667 0.00 0.00 0.00 4.85
376 377 7.518370 CGTTACCACATATTAGGAAATGACAGC 60.518 40.741 0.00 0.00 0.00 4.40
377 378 7.709182 TCGTTACCACATATTAGGAAATGACAG 59.291 37.037 0.00 0.00 0.00 3.51
378 379 7.557724 TCGTTACCACATATTAGGAAATGACA 58.442 34.615 0.00 0.00 0.00 3.58
379 380 7.924412 TCTCGTTACCACATATTAGGAAATGAC 59.076 37.037 0.00 0.00 0.00 3.06
380 381 8.014070 TCTCGTTACCACATATTAGGAAATGA 57.986 34.615 0.00 0.00 0.00 2.57
381 382 8.833231 ATCTCGTTACCACATATTAGGAAATG 57.167 34.615 0.00 0.00 0.00 2.32
382 383 8.647796 TGATCTCGTTACCACATATTAGGAAAT 58.352 33.333 0.00 0.00 0.00 2.17
383 384 8.014070 TGATCTCGTTACCACATATTAGGAAA 57.986 34.615 0.00 0.00 0.00 3.13
384 385 7.591421 TGATCTCGTTACCACATATTAGGAA 57.409 36.000 0.00 0.00 0.00 3.36
385 386 7.591421 TTGATCTCGTTACCACATATTAGGA 57.409 36.000 0.00 0.00 0.00 2.94
386 387 8.833231 AATTGATCTCGTTACCACATATTAGG 57.167 34.615 0.00 0.00 0.00 2.69
389 390 9.787532 CAAAAATTGATCTCGTTACCACATATT 57.212 29.630 0.00 0.00 0.00 1.28
390 391 8.956426 ACAAAAATTGATCTCGTTACCACATAT 58.044 29.630 0.00 0.00 0.00 1.78
391 392 8.233868 CACAAAAATTGATCTCGTTACCACATA 58.766 33.333 0.00 0.00 0.00 2.29
392 393 7.083858 CACAAAAATTGATCTCGTTACCACAT 58.916 34.615 0.00 0.00 0.00 3.21
393 394 6.038825 ACACAAAAATTGATCTCGTTACCACA 59.961 34.615 0.00 0.00 0.00 4.17
394 395 6.435428 ACACAAAAATTGATCTCGTTACCAC 58.565 36.000 0.00 0.00 0.00 4.16
395 396 6.627395 ACACAAAAATTGATCTCGTTACCA 57.373 33.333 0.00 0.00 0.00 3.25
396 397 6.741358 GCTACACAAAAATTGATCTCGTTACC 59.259 38.462 0.00 0.00 0.00 2.85
397 398 7.268447 GTGCTACACAAAAATTGATCTCGTTAC 59.732 37.037 0.00 0.00 34.08 2.50
398 399 7.041712 TGTGCTACACAAAAATTGATCTCGTTA 60.042 33.333 0.00 0.00 41.69 3.18
399 400 6.142817 GTGCTACACAAAAATTGATCTCGTT 58.857 36.000 0.00 0.00 34.08 3.85
400 401 5.238432 TGTGCTACACAAAAATTGATCTCGT 59.762 36.000 0.00 0.00 41.69 4.18
401 402 5.688823 TGTGCTACACAAAAATTGATCTCG 58.311 37.500 0.00 0.00 41.69 4.04
416 417 1.566404 CAAGTGACGTGTGTGCTACA 58.434 50.000 0.00 0.00 36.82 2.74
417 418 0.232303 GCAAGTGACGTGTGTGCTAC 59.768 55.000 0.00 0.00 32.43 3.58
418 419 0.104120 AGCAAGTGACGTGTGTGCTA 59.896 50.000 10.03 0.00 43.51 3.49
419 420 1.153369 AGCAAGTGACGTGTGTGCT 60.153 52.632 0.00 0.00 40.64 4.40
420 421 0.098728 AAAGCAAGTGACGTGTGTGC 59.901 50.000 0.00 0.00 35.41 4.57
421 422 2.542766 AAAAGCAAGTGACGTGTGTG 57.457 45.000 0.00 0.00 0.00 3.82
440 441 6.612247 TTTCTGATAGAAGCGTGACAAAAA 57.388 33.333 0.00 0.00 35.37 1.94
441 442 6.612247 TTTTCTGATAGAAGCGTGACAAAA 57.388 33.333 0.00 0.00 35.37 2.44
442 443 6.037720 TGTTTTTCTGATAGAAGCGTGACAAA 59.962 34.615 0.00 0.00 35.37 2.83
443 444 5.525745 TGTTTTTCTGATAGAAGCGTGACAA 59.474 36.000 0.00 0.00 35.37 3.18
444 445 5.053811 TGTTTTTCTGATAGAAGCGTGACA 58.946 37.500 0.00 0.00 35.37 3.58
445 446 5.591643 TGTTTTTCTGATAGAAGCGTGAC 57.408 39.130 0.00 0.00 35.37 3.67
446 447 6.612247 TTTGTTTTTCTGATAGAAGCGTGA 57.388 33.333 0.00 0.00 35.37 4.35
447 448 7.132213 TCTTTTGTTTTTCTGATAGAAGCGTG 58.868 34.615 0.00 0.00 35.37 5.34
448 449 7.259290 TCTTTTGTTTTTCTGATAGAAGCGT 57.741 32.000 0.00 0.00 35.37 5.07
449 450 9.825972 TTATCTTTTGTTTTTCTGATAGAAGCG 57.174 29.630 0.00 0.00 35.37 4.68
505 506 7.124901 AGGGTGTGGCTATATAACATCTAGATG 59.875 40.741 27.63 27.63 44.15 2.90
506 507 7.192628 AGGGTGTGGCTATATAACATCTAGAT 58.807 38.462 0.00 0.00 0.00 1.98
507 508 6.562228 AGGGTGTGGCTATATAACATCTAGA 58.438 40.000 0.00 0.00 0.00 2.43
508 509 6.859112 AGGGTGTGGCTATATAACATCTAG 57.141 41.667 0.00 0.00 0.00 2.43
509 510 7.512746 AGAAAGGGTGTGGCTATATAACATCTA 59.487 37.037 0.00 0.00 0.00 1.98
510 511 6.330250 AGAAAGGGTGTGGCTATATAACATCT 59.670 38.462 0.00 0.00 0.00 2.90
511 512 6.534634 AGAAAGGGTGTGGCTATATAACATC 58.465 40.000 0.00 0.00 0.00 3.06
512 513 6.515512 AGAAAGGGTGTGGCTATATAACAT 57.484 37.500 0.00 0.00 0.00 2.71
513 514 5.968676 AGAAAGGGTGTGGCTATATAACA 57.031 39.130 0.00 0.00 0.00 2.41
514 515 8.741603 TTTTAGAAAGGGTGTGGCTATATAAC 57.258 34.615 0.00 0.00 0.00 1.89
515 516 9.569122 GATTTTAGAAAGGGTGTGGCTATATAA 57.431 33.333 0.00 0.00 0.00 0.98
516 517 8.719596 TGATTTTAGAAAGGGTGTGGCTATATA 58.280 33.333 0.00 0.00 0.00 0.86
517 518 7.582719 TGATTTTAGAAAGGGTGTGGCTATAT 58.417 34.615 0.00 0.00 0.00 0.86
518 519 6.964464 TGATTTTAGAAAGGGTGTGGCTATA 58.036 36.000 0.00 0.00 0.00 1.31
519 520 5.826643 TGATTTTAGAAAGGGTGTGGCTAT 58.173 37.500 0.00 0.00 0.00 2.97
520 521 5.222048 ACTGATTTTAGAAAGGGTGTGGCTA 60.222 40.000 0.00 0.00 0.00 3.93
521 522 4.082125 CTGATTTTAGAAAGGGTGTGGCT 58.918 43.478 0.00 0.00 0.00 4.75
522 523 3.826729 ACTGATTTTAGAAAGGGTGTGGC 59.173 43.478 0.00 0.00 0.00 5.01
523 524 5.070001 TGACTGATTTTAGAAAGGGTGTGG 58.930 41.667 0.00 0.00 0.00 4.17
524 525 5.335191 GCTGACTGATTTTAGAAAGGGTGTG 60.335 44.000 0.00 0.00 0.00 3.82
525 526 4.762251 GCTGACTGATTTTAGAAAGGGTGT 59.238 41.667 0.00 0.00 0.00 4.16
526 527 5.006386 AGCTGACTGATTTTAGAAAGGGTG 58.994 41.667 0.00 0.00 0.00 4.61
527 528 5.248380 AGCTGACTGATTTTAGAAAGGGT 57.752 39.130 0.00 0.00 0.00 4.34
541 542 1.260538 TGGCTAGGGTCAGCTGACTG 61.261 60.000 38.17 27.02 44.20 3.51
542 543 1.079256 TGGCTAGGGTCAGCTGACT 59.921 57.895 38.17 25.85 44.20 3.41
543 544 1.219393 GTGGCTAGGGTCAGCTGAC 59.781 63.158 34.25 34.25 44.04 3.51
544 545 2.351244 CGTGGCTAGGGTCAGCTGA 61.351 63.158 13.74 13.74 41.50 4.26
545 546 2.185350 CGTGGCTAGGGTCAGCTG 59.815 66.667 7.63 7.63 41.50 4.24
546 547 3.775654 GCGTGGCTAGGGTCAGCT 61.776 66.667 0.00 0.00 41.50 4.24
547 548 4.840005 GGCGTGGCTAGGGTCAGC 62.840 72.222 0.00 0.00 41.02 4.26
548 549 4.162690 GGGCGTGGCTAGGGTCAG 62.163 72.222 0.00 0.00 0.00 3.51
552 553 4.609018 CATCGGGCGTGGCTAGGG 62.609 72.222 0.00 0.00 0.00 3.53
553 554 2.023414 TAACATCGGGCGTGGCTAGG 62.023 60.000 0.00 0.00 0.00 3.02
554 555 0.179094 TTAACATCGGGCGTGGCTAG 60.179 55.000 0.00 0.00 0.00 3.42
555 556 0.466543 ATTAACATCGGGCGTGGCTA 59.533 50.000 0.00 0.00 0.00 3.93
556 557 0.814010 GATTAACATCGGGCGTGGCT 60.814 55.000 0.00 0.00 0.00 4.75
557 558 1.647084 GATTAACATCGGGCGTGGC 59.353 57.895 0.00 0.00 0.00 5.01
558 559 0.462937 TGGATTAACATCGGGCGTGG 60.463 55.000 0.00 0.00 0.00 4.94
559 560 0.655733 GTGGATTAACATCGGGCGTG 59.344 55.000 0.00 0.00 0.00 5.34
560 561 0.539986 AGTGGATTAACATCGGGCGT 59.460 50.000 0.00 0.00 0.00 5.68
561 562 2.035449 TCTAGTGGATTAACATCGGGCG 59.965 50.000 0.00 0.00 0.00 6.13
562 563 3.746045 TCTAGTGGATTAACATCGGGC 57.254 47.619 0.00 0.00 0.00 6.13
563 564 6.525629 AGATTTCTAGTGGATTAACATCGGG 58.474 40.000 0.00 0.00 0.00 5.14
564 565 7.329717 GCTAGATTTCTAGTGGATTAACATCGG 59.670 40.741 14.43 0.00 45.85 4.18
565 566 8.085296 AGCTAGATTTCTAGTGGATTAACATCG 58.915 37.037 14.43 0.00 45.85 3.84
600 601 1.354040 GAGAGTGCATGAACCTCACG 58.646 55.000 14.28 0.00 35.97 4.35
682 687 7.117241 TGCTAAGTTTTGTTAACGAGATCAG 57.883 36.000 0.26 0.00 0.00 2.90
683 688 7.172532 ACATGCTAAGTTTTGTTAACGAGATCA 59.827 33.333 0.26 0.00 0.00 2.92
684 689 7.519002 ACATGCTAAGTTTTGTTAACGAGATC 58.481 34.615 0.26 0.00 0.00 2.75
686 691 6.704493 AGACATGCTAAGTTTTGTTAACGAGA 59.296 34.615 0.26 0.00 0.00 4.04
687 692 6.888430 AGACATGCTAAGTTTTGTTAACGAG 58.112 36.000 0.26 0.00 0.00 4.18
688 693 6.854496 AGACATGCTAAGTTTTGTTAACGA 57.146 33.333 0.26 0.00 0.00 3.85
689 694 8.996988 TTAAGACATGCTAAGTTTTGTTAACG 57.003 30.769 0.26 0.00 0.00 3.18
720 1278 1.063616 CGATTGGACATGAGCTTGCTG 59.936 52.381 0.00 0.00 0.00 4.41
736 1340 5.163723 CCTCAGAATTTGTATGTGCACGATT 60.164 40.000 13.13 5.36 0.00 3.34
742 1346 6.743575 AGTAACCTCAGAATTTGTATGTGC 57.256 37.500 0.00 0.00 0.00 4.57
876 1530 6.575267 TCATAATTGAATGAATTGGCCTGTG 58.425 36.000 3.32 0.00 35.74 3.66
882 1536 8.657074 ATTGCACTCATAATTGAATGAATTGG 57.343 30.769 0.00 0.00 35.51 3.16
892 1546 7.361127 GGAGAGATCAATTGCACTCATAATTG 58.639 38.462 23.31 0.00 42.66 2.32
893 1547 6.204301 CGGAGAGATCAATTGCACTCATAATT 59.796 38.462 23.31 10.27 32.59 1.40
894 1548 5.699915 CGGAGAGATCAATTGCACTCATAAT 59.300 40.000 23.31 10.53 32.59 1.28
895 1549 5.052481 CGGAGAGATCAATTGCACTCATAA 58.948 41.667 23.31 0.00 32.59 1.90
896 1550 4.625028 CGGAGAGATCAATTGCACTCATA 58.375 43.478 23.31 0.09 32.59 2.15
897 1551 3.464907 CGGAGAGATCAATTGCACTCAT 58.535 45.455 23.31 13.94 32.59 2.90
898 1552 2.897436 CGGAGAGATCAATTGCACTCA 58.103 47.619 23.31 1.34 32.59 3.41
900 1554 1.661341 GCGGAGAGATCAATTGCACT 58.339 50.000 0.00 2.20 0.00 4.40
902 1556 0.811219 CCGCGGAGAGATCAATTGCA 60.811 55.000 24.07 0.00 0.00 4.08
903 1557 1.937391 CCGCGGAGAGATCAATTGC 59.063 57.895 24.07 0.00 0.00 3.56
904 1558 0.531532 AGCCGCGGAGAGATCAATTG 60.532 55.000 33.48 0.00 0.00 2.32
905 1559 1.040646 TAGCCGCGGAGAGATCAATT 58.959 50.000 33.48 2.43 0.00 2.32
906 1560 1.261480 ATAGCCGCGGAGAGATCAAT 58.739 50.000 33.48 6.24 0.00 2.57
920 1584 5.104900 AGGATGGATCGGTGTTTATATAGCC 60.105 44.000 0.00 0.00 0.00 3.93
940 1604 2.172930 TGTCTGGCTACTACTCGAGGAT 59.827 50.000 18.41 3.91 0.00 3.24
941 1605 1.558294 TGTCTGGCTACTACTCGAGGA 59.442 52.381 18.41 7.44 0.00 3.71
942 1606 1.671845 GTGTCTGGCTACTACTCGAGG 59.328 57.143 18.41 1.82 0.00 4.63
943 1607 2.357075 TGTGTCTGGCTACTACTCGAG 58.643 52.381 11.84 11.84 0.00 4.04
963 1627 6.352910 GGGACTGAGACGAGGTAGGTATATAT 60.353 46.154 0.00 0.00 0.00 0.86
964 1628 5.046014 GGGACTGAGACGAGGTAGGTATATA 60.046 48.000 0.00 0.00 0.00 0.86
965 1629 4.263418 GGGACTGAGACGAGGTAGGTATAT 60.263 50.000 0.00 0.00 0.00 0.86
966 1630 3.072184 GGGACTGAGACGAGGTAGGTATA 59.928 52.174 0.00 0.00 0.00 1.47
987 1651 1.838112 TTGCCATGCCAAAGACTAGG 58.162 50.000 0.00 0.00 0.00 3.02
995 1662 2.679287 TCGCCATTGCCATGCCAA 60.679 55.556 0.00 0.00 0.00 4.52
1464 2140 1.768077 CTCCTCCTCCCCCATGTCC 60.768 68.421 0.00 0.00 0.00 4.02
1617 2293 1.371389 GAGTTGCTGCTGCTGTTGC 60.371 57.895 17.00 4.76 40.48 4.17
1793 2478 5.945144 TGACTGGATCTCATTCATCTTCA 57.055 39.130 0.00 0.00 31.33 3.02
1806 2491 0.658829 CGCGACTCGATGACTGGATC 60.659 60.000 0.00 0.00 41.67 3.36
1960 2646 5.800941 ACAACGACAATAAAAGCGAAAAACA 59.199 32.000 0.00 0.00 0.00 2.83
1961 2647 6.111050 CACAACGACAATAAAAGCGAAAAAC 58.889 36.000 0.00 0.00 0.00 2.43
2089 2781 1.337260 GCGGCCCACTCATCTATAGTG 60.337 57.143 0.00 0.00 43.26 2.74
2090 2782 0.969894 GCGGCCCACTCATCTATAGT 59.030 55.000 0.00 0.00 0.00 2.12
2091 2783 0.247736 GGCGGCCCACTCATCTATAG 59.752 60.000 8.12 0.00 0.00 1.31
2092 2784 1.192146 GGGCGGCCCACTCATCTATA 61.192 60.000 32.90 0.00 44.65 1.31
2093 2785 2.520536 GGGCGGCCCACTCATCTAT 61.521 63.158 32.90 0.00 44.65 1.98
2094 2786 3.161450 GGGCGGCCCACTCATCTA 61.161 66.667 32.90 0.00 44.65 1.98
2202 2894 3.612115 TACCGGGGTCCTCTGTGGG 62.612 68.421 6.32 0.00 36.20 4.61
2207 2899 2.365237 GGCTTACCGGGGTCCTCT 60.365 66.667 6.32 0.00 0.00 3.69
2228 2920 2.198426 ACAGGGTTGCAGGTTGGG 59.802 61.111 0.00 0.00 0.00 4.12
2243 2935 0.532573 GGTCGAGAGCTTCATCCACA 59.467 55.000 0.00 0.00 0.00 4.17
2270 2962 3.902162 GACGGTGCTAACGGCGTCA 62.902 63.158 15.17 3.96 45.43 4.35
2351 3043 1.996086 GGGATCGAAGGAAACCCCA 59.004 57.895 0.00 0.00 37.07 4.96
2417 3109 1.057851 AACAAGGGGACAGGAACGGA 61.058 55.000 0.00 0.00 0.00 4.69
2420 3112 3.296854 AGAAAAACAAGGGGACAGGAAC 58.703 45.455 0.00 0.00 0.00 3.62
2442 3134 2.125673 ATCCCGAACACGAAGCGG 60.126 61.111 0.00 0.00 44.42 5.52
2446 3138 1.341852 TGACAAGATCCCGAACACGAA 59.658 47.619 0.00 0.00 0.00 3.85
2459 3151 5.458891 GCGTAGAAGAAGTAGTTGACAAGA 58.541 41.667 0.00 0.00 0.00 3.02
2499 3191 1.513622 GAGCGACCTGGAGGACTTC 59.486 63.158 0.00 0.00 38.94 3.01
2501 3193 2.363147 GGAGCGACCTGGAGGACT 60.363 66.667 0.00 0.00 38.94 3.85
2505 3197 4.154347 GGCTGGAGCGACCTGGAG 62.154 72.222 0.00 0.00 43.26 3.86
2513 3205 4.680237 TGGAACACGGCTGGAGCG 62.680 66.667 0.00 0.00 43.26 5.03
2551 3243 2.126467 CAACAATGAAACGGGCAACAG 58.874 47.619 0.00 0.00 39.74 3.16
2555 3247 0.031857 CAGCAACAATGAAACGGGCA 59.968 50.000 0.00 0.00 0.00 5.36
2558 3250 2.552315 ACCTACAGCAACAATGAAACGG 59.448 45.455 0.00 0.00 0.00 4.44
2562 3254 3.243367 GCAACACCTACAGCAACAATGAA 60.243 43.478 0.00 0.00 0.00 2.57
2567 3259 0.821711 GGGCAACACCTACAGCAACA 60.822 55.000 0.00 0.00 39.10 3.33
2569 3261 0.537143 CTGGGCAACACCTACAGCAA 60.537 55.000 0.00 0.00 39.10 3.91
2585 3277 1.318158 GCTTGACCAAGGCCATCTGG 61.318 60.000 15.12 15.12 38.80 3.86
2598 3290 3.088500 GATGCGGCGTCAGCTTGAC 62.089 63.158 17.00 6.31 43.65 3.18
2669 3361 1.303799 TTCGTCTCGTCTCCCCTTCG 61.304 60.000 0.00 0.00 0.00 3.79
2671 3363 0.889306 CTTTCGTCTCGTCTCCCCTT 59.111 55.000 0.00 0.00 0.00 3.95
2677 3369 2.126424 GCCGCTTTCGTCTCGTCT 60.126 61.111 0.00 0.00 0.00 4.18
2684 3376 2.672996 AATGCAGGCCGCTTTCGT 60.673 55.556 18.14 0.00 43.06 3.85
2687 3379 0.319813 GTTTGAATGCAGGCCGCTTT 60.320 50.000 18.14 17.28 43.06 3.51
2693 3385 1.474077 CTACAGGGTTTGAATGCAGGC 59.526 52.381 0.00 0.00 0.00 4.85
2744 3436 2.823829 GCAATTAGTGCGCCGAGGG 61.824 63.158 4.18 0.00 45.10 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.