Multiple sequence alignment - TraesCS3B01G608400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G608400 chr3B 100.000 3565 0 0 1 3565 826710412 826713976 0.000000e+00 6584.0
1 TraesCS3B01G608400 chr3B 82.486 177 27 3 80 255 381463668 381463495 6.160000e-33 152.0
2 TraesCS3B01G608400 chr3B 94.444 54 2 1 815 867 98803357 98803304 8.200000e-12 82.4
3 TraesCS3B01G608400 chr3A 90.216 1298 87 26 1680 2952 746944723 746943441 0.000000e+00 1657.0
4 TraesCS3B01G608400 chr3A 88.210 687 46 18 879 1561 746945534 746944879 0.000000e+00 787.0
5 TraesCS3B01G608400 chr3A 87.772 597 36 14 149 732 746946092 746945520 0.000000e+00 664.0
6 TraesCS3B01G608400 chr3A 89.417 463 43 5 3102 3564 746942010 746941554 2.390000e-161 579.0
7 TraesCS3B01G608400 chr3A 98.246 57 1 0 3003 3059 746942064 746942008 2.260000e-17 100.0
8 TraesCS3B01G608400 chr3A 91.935 62 5 0 59 120 746946159 746946098 1.760000e-13 87.9
9 TraesCS3B01G608400 chr3D 81.805 1385 144 52 2237 3564 612290612 612289279 0.000000e+00 1062.0
10 TraesCS3B01G608400 chr3D 91.260 778 46 10 1 764 612292697 612291928 0.000000e+00 1040.0
11 TraesCS3B01G608400 chr3D 91.703 687 32 12 888 1561 612291922 612291248 0.000000e+00 929.0
12 TraesCS3B01G608400 chr3D 95.417 480 20 2 1680 2158 612291124 612290646 0.000000e+00 763.0
13 TraesCS3B01G608400 chr3D 81.938 227 30 8 30 255 2137627 2137843 7.860000e-42 182.0
14 TraesCS3B01G608400 chr3D 88.372 129 11 3 128 255 378570932 378570807 6.160000e-33 152.0
15 TraesCS3B01G608400 chr3D 91.837 49 4 0 1102 1150 123517119 123517071 6.390000e-08 69.4
16 TraesCS3B01G608400 chr1D 88.406 552 39 16 1033 1562 139979037 139979585 3.000000e-180 641.0
17 TraesCS3B01G608400 chr1D 92.727 440 30 2 1683 2121 139979689 139980127 5.020000e-178 634.0
18 TraesCS3B01G608400 chr1D 92.780 277 16 3 2291 2566 139980843 139981116 7.170000e-107 398.0
19 TraesCS3B01G608400 chr1D 75.132 189 40 5 2349 2532 461506367 461506181 8.200000e-12 82.4
20 TraesCS3B01G608400 chr1D 74.603 189 41 5 2349 2532 461485695 461485509 3.820000e-10 76.8
21 TraesCS3B01G608400 chr1B 92.444 450 31 3 1683 2131 198644546 198644099 1.080000e-179 640.0
22 TraesCS3B01G608400 chr1B 86.609 575 45 20 1032 1576 198645174 198644602 1.090000e-169 606.0
23 TraesCS3B01G608400 chr1B 94.286 245 14 0 2322 2566 198643257 198643013 3.360000e-100 375.0
24 TraesCS3B01G608400 chr1B 92.593 54 2 2 815 867 2453132 2453080 3.820000e-10 76.8
25 TraesCS3B01G608400 chr1A 88.385 551 39 18 1032 1562 150902023 150901478 1.080000e-179 640.0
26 TraesCS3B01G608400 chr1A 92.500 440 31 2 1683 2121 150901386 150900948 2.340000e-176 628.0
27 TraesCS3B01G608400 chr1A 93.469 245 16 0 2322 2566 150900004 150899760 7.270000e-97 364.0
28 TraesCS3B01G608400 chr7D 79.556 225 27 13 35 255 49759570 49759779 3.710000e-30 143.0
29 TraesCS3B01G608400 chr7D 94.444 54 2 1 815 867 223108069 223108016 8.200000e-12 82.4
30 TraesCS3B01G608400 chr2B 96.296 54 1 1 815 867 785593969 785593916 1.760000e-13 87.9
31 TraesCS3B01G608400 chr6B 94.444 54 2 1 815 867 479296307 479296360 8.200000e-12 82.4
32 TraesCS3B01G608400 chr4D 94.444 54 2 1 815 867 463624845 463624792 8.200000e-12 82.4
33 TraesCS3B01G608400 chr4B 94.444 54 2 1 815 867 483694140 483694087 8.200000e-12 82.4
34 TraesCS3B01G608400 chr4B 92.593 54 3 1 815 867 630376671 630376618 3.820000e-10 76.8
35 TraesCS3B01G608400 chrUn 75.568 176 32 6 2349 2517 218156143 218156314 3.820000e-10 76.8
36 TraesCS3B01G608400 chrUn 75.000 192 35 8 2349 2532 246422226 246422040 3.820000e-10 76.8
37 TraesCS3B01G608400 chr7A 92.593 54 3 1 815 867 464782854 464782801 3.820000e-10 76.8
38 TraesCS3B01G608400 chr4A 91.489 47 1 3 210 255 470960640 470960684 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G608400 chr3B 826710412 826713976 3564 False 6584.000000 6584 100.000000 1 3565 1 chr3B.!!$F1 3564
1 TraesCS3B01G608400 chr3A 746941554 746946159 4605 True 645.816667 1657 90.966000 59 3564 6 chr3A.!!$R1 3505
2 TraesCS3B01G608400 chr3D 612289279 612292697 3418 True 948.500000 1062 90.046250 1 3564 4 chr3D.!!$R3 3563
3 TraesCS3B01G608400 chr1D 139979037 139981116 2079 False 557.666667 641 91.304333 1033 2566 3 chr1D.!!$F1 1533
4 TraesCS3B01G608400 chr1B 198643013 198645174 2161 True 540.333333 640 91.113000 1032 2566 3 chr1B.!!$R2 1534
5 TraesCS3B01G608400 chr1A 150899760 150902023 2263 True 544.000000 640 91.451333 1032 2566 3 chr1A.!!$R1 1534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 833 0.034337 GCACCGTGACCAAGGACTTA 59.966 55.0 8.91 0.0 33.97 2.24 F
886 902 0.107831 GTAATCCATGTGCCCCGCTA 59.892 55.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2416 0.106708 ACACACACACCAGCAGTAGG 59.893 55.0 0.0 0.0 0.0 3.18 R
2566 3860 0.304705 CGAGCCGAATTGGATTTCCG 59.695 55.0 0.0 0.0 42.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.486203 TGCACTTAATTTGGTAGTGGCG 59.514 45.455 0.00 0.00 39.66 5.69
74 75 1.504446 GCCGTGTGTGTTGTGTGTT 59.496 52.632 0.00 0.00 0.00 3.32
77 78 1.068885 CCGTGTGTGTTGTGTGTTGTT 60.069 47.619 0.00 0.00 0.00 2.83
138 139 4.278310 ACTTGGTTTTTGCTAGGTGAAGT 58.722 39.130 0.00 0.00 0.00 3.01
144 145 1.234821 TTGCTAGGTGAAGTTTGCCG 58.765 50.000 0.00 0.00 0.00 5.69
167 168 2.032071 CAGGTTTTCGCCCGGTCT 59.968 61.111 0.00 0.00 0.00 3.85
207 208 1.628846 AGTGTGGGTCCTTGTACCATC 59.371 52.381 0.00 0.00 41.67 3.51
251 253 4.437239 CAGCTCTCCTGTTATCGTTCAAT 58.563 43.478 0.00 0.00 36.79 2.57
280 282 1.003928 GGGGGAGATACGTTTTGGTGT 59.996 52.381 0.00 0.00 0.00 4.16
284 286 3.556423 GGGAGATACGTTTTGGTGTCTGT 60.556 47.826 0.00 0.00 38.33 3.41
292 294 2.948979 GTTTTGGTGTCTGTCCATGTCA 59.051 45.455 0.00 0.00 34.75 3.58
299 301 2.159240 TGTCTGTCCATGTCATCGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
302 304 3.565902 TCTGTCCATGTCATCGTAGCTAG 59.434 47.826 0.00 0.00 0.00 3.42
303 305 3.551846 TGTCCATGTCATCGTAGCTAGA 58.448 45.455 0.00 0.00 0.00 2.43
304 306 4.145052 TGTCCATGTCATCGTAGCTAGAT 58.855 43.478 0.00 0.00 0.00 1.98
306 308 5.412904 TGTCCATGTCATCGTAGCTAGATAG 59.587 44.000 0.00 0.00 0.00 2.08
317 324 4.705507 CGTAGCTAGATAGGGATAGCCAAA 59.294 45.833 0.00 0.00 44.45 3.28
318 325 5.361285 CGTAGCTAGATAGGGATAGCCAAAT 59.639 44.000 0.00 0.00 44.45 2.32
331 338 8.112183 AGGGATAGCCAAATCTCCAATAATTAG 58.888 37.037 0.00 0.00 35.15 1.73
333 340 9.959721 GGATAGCCAAATCTCCAATAATTAGTA 57.040 33.333 0.00 0.00 0.00 1.82
350 365 3.033659 AGTACCTATCTGGGGAGTGTG 57.966 52.381 0.00 0.00 41.11 3.82
391 406 2.513897 GTGCCCTGCCGTATCACC 60.514 66.667 0.00 0.00 0.00 4.02
412 427 2.434336 CACGTATGATCCCTTCTTCCCA 59.566 50.000 0.00 0.00 0.00 4.37
503 518 5.605534 ACATGAAGGTGCATCATAGAGTAC 58.394 41.667 0.00 0.00 35.80 2.73
544 560 3.565482 AGTGTCAGCGATGATGTTGTTTT 59.435 39.130 6.66 0.00 0.00 2.43
590 606 4.788679 ACCCTGGTTAATTAAGCGCTAAT 58.211 39.130 12.05 8.33 36.53 1.73
591 607 5.198207 ACCCTGGTTAATTAAGCGCTAATT 58.802 37.500 12.05 18.19 41.95 1.40
614 630 0.040067 CGCATCCAGATCACGATCGA 60.040 55.000 24.34 0.00 42.48 3.59
721 737 0.673644 ACGAAAGTCCATGGCTTCCG 60.674 55.000 20.14 20.14 44.19 4.30
722 738 0.673644 CGAAAGTCCATGGCTTCCGT 60.674 55.000 18.02 6.60 0.00 4.69
728 744 2.238646 AGTCCATGGCTTCCGTGATTAA 59.761 45.455 6.96 0.00 42.73 1.40
729 745 2.354821 GTCCATGGCTTCCGTGATTAAC 59.645 50.000 6.96 0.00 42.73 2.01
743 759 7.586747 TCCGTGATTAACAAACTGGTAATTTC 58.413 34.615 0.00 0.00 40.10 2.17
745 761 8.026607 CCGTGATTAACAAACTGGTAATTTCAT 58.973 33.333 0.00 0.00 40.10 2.57
767 783 2.905880 CGTCGTCGAGGCCCCTAT 60.906 66.667 0.00 0.00 39.71 2.57
768 784 1.598962 CGTCGTCGAGGCCCCTATA 60.599 63.158 0.00 0.00 39.71 1.31
769 785 1.575576 CGTCGTCGAGGCCCCTATAG 61.576 65.000 0.00 0.00 39.71 1.31
770 786 0.536915 GTCGTCGAGGCCCCTATAGT 60.537 60.000 0.00 0.00 0.00 2.12
771 787 1.059098 TCGTCGAGGCCCCTATAGTA 58.941 55.000 0.00 0.00 0.00 1.82
772 788 1.163554 CGTCGAGGCCCCTATAGTAC 58.836 60.000 0.00 0.00 0.00 2.73
773 789 1.271271 CGTCGAGGCCCCTATAGTACT 60.271 57.143 0.00 0.00 0.00 2.73
774 790 2.435422 GTCGAGGCCCCTATAGTACTC 58.565 57.143 0.00 0.42 0.00 2.59
775 791 1.353694 TCGAGGCCCCTATAGTACTCC 59.646 57.143 0.00 0.00 0.00 3.85
776 792 1.355043 CGAGGCCCCTATAGTACTCCT 59.645 57.143 0.00 0.00 0.00 3.69
777 793 2.225066 CGAGGCCCCTATAGTACTCCTT 60.225 54.545 0.00 0.00 0.00 3.36
778 794 3.433343 GAGGCCCCTATAGTACTCCTTC 58.567 54.545 0.00 0.00 0.00 3.46
779 795 2.112151 AGGCCCCTATAGTACTCCTTCC 59.888 54.545 0.00 0.00 0.00 3.46
780 796 2.169330 GCCCCTATAGTACTCCTTCCG 58.831 57.143 0.00 0.00 0.00 4.30
781 797 2.490535 GCCCCTATAGTACTCCTTCCGT 60.491 54.545 0.00 0.00 0.00 4.69
782 798 3.419943 CCCCTATAGTACTCCTTCCGTC 58.580 54.545 0.00 0.00 0.00 4.79
783 799 3.074242 CCCCTATAGTACTCCTTCCGTCT 59.926 52.174 0.00 0.00 0.00 4.18
784 800 4.288105 CCCCTATAGTACTCCTTCCGTCTA 59.712 50.000 0.00 0.00 0.00 2.59
785 801 5.490159 CCCTATAGTACTCCTTCCGTCTAG 58.510 50.000 0.00 0.00 0.00 2.43
786 802 5.490159 CCTATAGTACTCCTTCCGTCTAGG 58.510 50.000 0.00 0.00 42.97 3.02
787 803 5.012975 CCTATAGTACTCCTTCCGTCTAGGT 59.987 48.000 0.00 0.00 41.99 3.08
788 804 3.002038 AGTACTCCTTCCGTCTAGGTG 57.998 52.381 0.00 0.00 41.99 4.00
789 805 2.575279 AGTACTCCTTCCGTCTAGGTGA 59.425 50.000 0.00 0.00 41.99 4.02
790 806 2.599408 ACTCCTTCCGTCTAGGTGAA 57.401 50.000 0.00 0.00 41.99 3.18
791 807 3.103080 ACTCCTTCCGTCTAGGTGAAT 57.897 47.619 0.00 0.00 41.99 2.57
792 808 3.025262 ACTCCTTCCGTCTAGGTGAATC 58.975 50.000 0.00 0.00 41.99 2.52
793 809 2.362717 CTCCTTCCGTCTAGGTGAATCC 59.637 54.545 0.00 0.00 41.99 3.01
794 810 2.108168 CCTTCCGTCTAGGTGAATCCA 58.892 52.381 0.00 0.00 41.99 3.41
795 811 2.700897 CCTTCCGTCTAGGTGAATCCAT 59.299 50.000 0.00 0.00 41.99 3.41
796 812 3.493350 CCTTCCGTCTAGGTGAATCCATG 60.493 52.174 0.00 0.00 41.99 3.66
797 813 2.747177 TCCGTCTAGGTGAATCCATGT 58.253 47.619 0.00 0.00 41.99 3.21
798 814 2.430694 TCCGTCTAGGTGAATCCATGTG 59.569 50.000 0.00 0.00 41.99 3.21
799 815 2.205074 CGTCTAGGTGAATCCATGTGC 58.795 52.381 0.00 0.00 39.02 4.57
800 816 2.418609 CGTCTAGGTGAATCCATGTGCA 60.419 50.000 0.00 0.00 39.02 4.57
801 817 2.939103 GTCTAGGTGAATCCATGTGCAC 59.061 50.000 10.75 10.75 39.02 4.57
803 819 1.802636 GGTGAATCCATGTGCACCG 59.197 57.895 15.69 5.29 41.08 4.94
804 820 0.960364 GGTGAATCCATGTGCACCGT 60.960 55.000 15.69 0.00 41.08 4.83
805 821 0.168788 GTGAATCCATGTGCACCGTG 59.831 55.000 15.69 13.09 0.00 4.94
806 822 0.036022 TGAATCCATGTGCACCGTGA 59.964 50.000 15.69 8.07 31.20 4.35
807 823 0.447801 GAATCCATGTGCACCGTGAC 59.552 55.000 15.69 0.00 31.20 3.67
808 824 0.960364 AATCCATGTGCACCGTGACC 60.960 55.000 15.69 0.00 31.20 4.02
809 825 2.123248 ATCCATGTGCACCGTGACCA 62.123 55.000 15.69 0.00 31.20 4.02
810 826 1.896183 CCATGTGCACCGTGACCAA 60.896 57.895 15.69 0.00 31.20 3.67
811 827 1.575922 CATGTGCACCGTGACCAAG 59.424 57.895 15.69 0.00 31.20 3.61
812 828 1.600636 ATGTGCACCGTGACCAAGG 60.601 57.895 15.69 0.44 35.99 3.61
813 829 2.050836 ATGTGCACCGTGACCAAGGA 62.051 55.000 15.69 0.00 33.97 3.36
814 830 2.110213 TGCACCGTGACCAAGGAC 59.890 61.111 8.91 1.77 33.97 3.85
815 831 2.426023 GCACCGTGACCAAGGACT 59.574 61.111 8.91 0.00 33.97 3.85
816 832 1.227853 GCACCGTGACCAAGGACTT 60.228 57.895 8.91 0.00 33.97 3.01
817 833 0.034337 GCACCGTGACCAAGGACTTA 59.966 55.000 8.91 0.00 33.97 2.24
818 834 1.541670 GCACCGTGACCAAGGACTTAA 60.542 52.381 8.91 0.00 33.97 1.85
819 835 2.413837 CACCGTGACCAAGGACTTAAG 58.586 52.381 8.91 0.00 33.97 1.85
820 836 2.044758 ACCGTGACCAAGGACTTAAGT 58.955 47.619 8.13 8.13 33.97 2.24
821 837 2.436911 ACCGTGACCAAGGACTTAAGTT 59.563 45.455 10.02 0.00 33.97 2.66
822 838 2.806244 CCGTGACCAAGGACTTAAGTTG 59.194 50.000 10.02 4.17 31.21 3.16
823 839 3.463944 CGTGACCAAGGACTTAAGTTGT 58.536 45.455 10.02 2.80 0.00 3.32
824 840 3.247648 CGTGACCAAGGACTTAAGTTGTG 59.752 47.826 10.02 8.16 0.00 3.33
825 841 3.003378 GTGACCAAGGACTTAAGTTGTGC 59.997 47.826 10.02 0.00 0.00 4.57
826 842 3.211045 GACCAAGGACTTAAGTTGTGCA 58.789 45.455 10.02 0.00 0.00 4.57
827 843 2.949644 ACCAAGGACTTAAGTTGTGCAC 59.050 45.455 10.75 10.75 0.00 4.57
828 844 2.293399 CCAAGGACTTAAGTTGTGCACC 59.707 50.000 15.69 5.13 0.00 5.01
829 845 1.878953 AGGACTTAAGTTGTGCACCG 58.121 50.000 15.69 0.00 0.00 4.94
830 846 1.140252 AGGACTTAAGTTGTGCACCGT 59.860 47.619 15.69 0.15 0.00 4.83
831 847 1.263217 GGACTTAAGTTGTGCACCGTG 59.737 52.381 15.69 0.00 0.00 4.94
832 848 2.206750 GACTTAAGTTGTGCACCGTGA 58.793 47.619 15.69 0.00 0.00 4.35
833 849 1.937899 ACTTAAGTTGTGCACCGTGAC 59.062 47.619 15.69 7.95 0.00 3.67
834 850 1.263217 CTTAAGTTGTGCACCGTGACC 59.737 52.381 15.69 0.00 0.00 4.02
835 851 0.178301 TAAGTTGTGCACCGTGACCA 59.822 50.000 15.69 0.00 0.00 4.02
836 852 0.678366 AAGTTGTGCACCGTGACCAA 60.678 50.000 15.69 1.00 0.00 3.67
837 853 1.095228 AGTTGTGCACCGTGACCAAG 61.095 55.000 15.69 0.00 0.00 3.61
838 854 1.821759 TTGTGCACCGTGACCAAGG 60.822 57.895 15.69 0.44 35.99 3.61
839 855 2.110213 GTGCACCGTGACCAAGGA 59.890 61.111 5.22 0.00 33.97 3.36
840 856 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
841 857 2.358737 GCACCGTGACCAAGGAGG 60.359 66.667 8.91 2.33 45.67 4.30
842 858 2.879233 GCACCGTGACCAAGGAGGA 61.879 63.158 8.91 0.00 41.22 3.71
843 859 1.293498 CACCGTGACCAAGGAGGAG 59.707 63.158 8.91 0.00 41.22 3.69
844 860 1.913762 ACCGTGACCAAGGAGGAGG 60.914 63.158 8.91 0.00 41.22 4.30
845 861 1.609501 CCGTGACCAAGGAGGAGGA 60.610 63.158 0.00 0.00 41.22 3.71
846 862 1.192146 CCGTGACCAAGGAGGAGGAA 61.192 60.000 0.00 0.00 41.22 3.36
847 863 0.685097 CGTGACCAAGGAGGAGGAAA 59.315 55.000 0.00 0.00 41.22 3.13
848 864 1.071699 CGTGACCAAGGAGGAGGAAAA 59.928 52.381 0.00 0.00 41.22 2.29
849 865 2.486548 CGTGACCAAGGAGGAGGAAAAA 60.487 50.000 0.00 0.00 41.22 1.94
871 887 8.672823 AAAAACGAGAGACCTTAAGTTGTAAT 57.327 30.769 0.97 0.00 0.00 1.89
872 888 7.886405 AAACGAGAGACCTTAAGTTGTAATC 57.114 36.000 0.97 0.00 0.00 1.75
873 889 5.963594 ACGAGAGACCTTAAGTTGTAATCC 58.036 41.667 0.97 0.00 0.00 3.01
874 890 5.479375 ACGAGAGACCTTAAGTTGTAATCCA 59.521 40.000 0.97 0.00 0.00 3.41
875 891 6.154706 ACGAGAGACCTTAAGTTGTAATCCAT 59.845 38.462 0.97 0.00 0.00 3.41
876 892 6.477033 CGAGAGACCTTAAGTTGTAATCCATG 59.523 42.308 0.97 0.00 0.00 3.66
877 893 7.259088 AGAGACCTTAAGTTGTAATCCATGT 57.741 36.000 0.97 0.00 0.00 3.21
878 894 7.106239 AGAGACCTTAAGTTGTAATCCATGTG 58.894 38.462 0.97 0.00 0.00 3.21
879 895 5.648092 AGACCTTAAGTTGTAATCCATGTGC 59.352 40.000 0.97 0.00 0.00 4.57
880 896 4.705023 ACCTTAAGTTGTAATCCATGTGCC 59.295 41.667 0.97 0.00 0.00 5.01
881 897 4.097892 CCTTAAGTTGTAATCCATGTGCCC 59.902 45.833 0.97 0.00 0.00 5.36
882 898 2.143876 AGTTGTAATCCATGTGCCCC 57.856 50.000 0.00 0.00 0.00 5.80
883 899 0.738389 GTTGTAATCCATGTGCCCCG 59.262 55.000 0.00 0.00 0.00 5.73
884 900 1.034838 TTGTAATCCATGTGCCCCGC 61.035 55.000 0.00 0.00 0.00 6.13
885 901 1.152963 GTAATCCATGTGCCCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
886 902 0.107831 GTAATCCATGTGCCCCGCTA 59.892 55.000 0.00 0.00 0.00 4.26
907 923 2.413310 ATAACAACCCCCTAAGCACG 57.587 50.000 0.00 0.00 0.00 5.34
944 960 2.041755 GTCCCATTTCCTCTTCCCTTGT 59.958 50.000 0.00 0.00 0.00 3.16
953 969 3.149981 CCTCTTCCCTTGTCTTGTTTCC 58.850 50.000 0.00 0.00 0.00 3.13
1245 1277 1.267632 CGTCTCGTCATCGACTTCCTC 60.268 57.143 0.00 0.00 41.35 3.71
1257 1289 1.183676 ACTTCCTCGGTGCGTACCTT 61.184 55.000 20.87 0.00 45.22 3.50
1283 1315 2.737359 GCCGTCTCGATCCAACATGTAA 60.737 50.000 0.00 0.00 0.00 2.41
1311 1359 4.034858 CAGTCGAAATGGATGATTGACAGG 59.965 45.833 0.00 0.00 0.00 4.00
1321 1369 5.953548 TGGATGATTGACAGGTGATTGATTT 59.046 36.000 0.00 0.00 0.00 2.17
1327 1379 7.611079 TGATTGACAGGTGATTGATTTGATGTA 59.389 33.333 0.00 0.00 0.00 2.29
1331 1383 8.046107 TGACAGGTGATTGATTTGATGTATGTA 58.954 33.333 0.00 0.00 0.00 2.29
1333 1391 8.843262 ACAGGTGATTGATTTGATGTATGTATG 58.157 33.333 0.00 0.00 0.00 2.39
1523 1635 1.371183 CCAGCTCGAGTGGTTCCAA 59.629 57.895 15.13 0.00 0.00 3.53
1535 1647 1.420138 TGGTTCCAAGAGGTCAAGGAC 59.580 52.381 0.00 0.00 35.89 3.85
1541 1653 2.224867 CCAAGAGGTCAAGGACACCATT 60.225 50.000 0.00 0.00 36.23 3.16
1578 1690 3.560068 AGGTATTTCAATGAACGCCGATC 59.440 43.478 0.00 0.00 0.00 3.69
1581 1708 1.934589 TTCAATGAACGCCGATCGAT 58.065 45.000 18.66 0.00 41.67 3.59
1595 1785 3.885358 CGATCGATACATCGGTTCTGAA 58.115 45.455 10.26 0.00 44.81 3.02
1604 1794 4.798574 ACATCGGTTCTGAATTTTCTTGC 58.201 39.130 0.00 0.00 0.00 4.01
1607 1797 2.558359 CGGTTCTGAATTTTCTTGCCCT 59.442 45.455 0.00 0.00 0.00 5.19
1608 1798 3.612479 CGGTTCTGAATTTTCTTGCCCTG 60.612 47.826 0.00 0.00 0.00 4.45
1609 1799 3.573967 GGTTCTGAATTTTCTTGCCCTGA 59.426 43.478 0.00 0.00 0.00 3.86
1610 1800 4.039124 GGTTCTGAATTTTCTTGCCCTGAA 59.961 41.667 0.00 0.00 0.00 3.02
1611 1801 5.453198 GGTTCTGAATTTTCTTGCCCTGAAA 60.453 40.000 0.00 0.00 0.00 2.69
1612 1802 5.867903 TCTGAATTTTCTTGCCCTGAAAA 57.132 34.783 9.80 9.80 44.23 2.29
1613 1803 6.232581 TCTGAATTTTCTTGCCCTGAAAAA 57.767 33.333 10.93 0.00 43.62 1.94
1615 1805 6.707161 TCTGAATTTTCTTGCCCTGAAAAATG 59.293 34.615 10.93 4.74 43.62 2.32
1618 1808 6.866010 ATTTTCTTGCCCTGAAAAATGTTC 57.134 33.333 10.93 0.00 43.62 3.18
1624 1814 4.450053 TGCCCTGAAAAATGTTCCTTTTG 58.550 39.130 0.00 0.00 0.00 2.44
1625 1815 3.250762 GCCCTGAAAAATGTTCCTTTTGC 59.749 43.478 0.00 0.00 0.00 3.68
1626 1816 3.814842 CCCTGAAAAATGTTCCTTTTGCC 59.185 43.478 0.00 0.00 0.00 4.52
1627 1817 4.450053 CCTGAAAAATGTTCCTTTTGCCA 58.550 39.130 0.00 0.00 0.00 4.92
1628 1818 5.065235 CCTGAAAAATGTTCCTTTTGCCAT 58.935 37.500 0.00 0.00 0.00 4.40
1629 1819 5.049267 CCTGAAAAATGTTCCTTTTGCCATG 60.049 40.000 0.00 0.00 0.00 3.66
1630 1820 4.275443 TGAAAAATGTTCCTTTTGCCATGC 59.725 37.500 0.00 0.00 0.00 4.06
1631 1821 3.775261 AAATGTTCCTTTTGCCATGCT 57.225 38.095 0.00 0.00 0.00 3.79
1632 1822 3.323751 AATGTTCCTTTTGCCATGCTC 57.676 42.857 0.00 0.00 0.00 4.26
1633 1823 0.968405 TGTTCCTTTTGCCATGCTCC 59.032 50.000 0.00 0.00 0.00 4.70
1634 1824 0.247460 GTTCCTTTTGCCATGCTCCC 59.753 55.000 0.00 0.00 0.00 4.30
1635 1825 0.114954 TTCCTTTTGCCATGCTCCCT 59.885 50.000 0.00 0.00 0.00 4.20
1636 1826 0.323725 TCCTTTTGCCATGCTCCCTC 60.324 55.000 0.00 0.00 0.00 4.30
1637 1827 0.324091 CCTTTTGCCATGCTCCCTCT 60.324 55.000 0.00 0.00 0.00 3.69
1638 1828 1.064463 CCTTTTGCCATGCTCCCTCTA 60.064 52.381 0.00 0.00 0.00 2.43
1639 1829 2.423947 CCTTTTGCCATGCTCCCTCTAT 60.424 50.000 0.00 0.00 0.00 1.98
1640 1830 2.353357 TTTGCCATGCTCCCTCTATG 57.647 50.000 0.00 0.00 0.00 2.23
1641 1831 1.510492 TTGCCATGCTCCCTCTATGA 58.490 50.000 0.00 0.00 0.00 2.15
1642 1832 1.510492 TGCCATGCTCCCTCTATGAA 58.490 50.000 0.00 0.00 0.00 2.57
1643 1833 1.141657 TGCCATGCTCCCTCTATGAAC 59.858 52.381 0.00 0.00 0.00 3.18
1644 1834 1.875576 GCCATGCTCCCTCTATGAACG 60.876 57.143 0.00 0.00 0.00 3.95
1645 1835 1.414181 CCATGCTCCCTCTATGAACGT 59.586 52.381 0.00 0.00 0.00 3.99
1646 1836 2.158900 CCATGCTCCCTCTATGAACGTT 60.159 50.000 0.00 0.00 0.00 3.99
1647 1837 2.961526 TGCTCCCTCTATGAACGTTC 57.038 50.000 21.42 21.42 0.00 3.95
1648 1838 2.176045 TGCTCCCTCTATGAACGTTCA 58.824 47.619 31.41 31.41 42.14 3.18
1649 1839 2.094182 TGCTCCCTCTATGAACGTTCAC 60.094 50.000 31.87 16.48 40.49 3.18
1650 1840 2.166664 GCTCCCTCTATGAACGTTCACT 59.833 50.000 31.87 21.81 40.49 3.41
1651 1841 3.775202 CTCCCTCTATGAACGTTCACTG 58.225 50.000 31.87 25.00 40.49 3.66
1652 1842 3.427573 TCCCTCTATGAACGTTCACTGA 58.572 45.455 31.87 27.28 40.49 3.41
1653 1843 3.830178 TCCCTCTATGAACGTTCACTGAA 59.170 43.478 31.87 16.68 40.49 3.02
1654 1844 4.466370 TCCCTCTATGAACGTTCACTGAAT 59.534 41.667 31.87 18.56 40.49 2.57
1655 1845 5.655090 TCCCTCTATGAACGTTCACTGAATA 59.345 40.000 31.87 18.69 40.49 1.75
1656 1846 5.980116 CCCTCTATGAACGTTCACTGAATAG 59.020 44.000 31.87 25.87 40.49 1.73
1657 1847 5.460419 CCTCTATGAACGTTCACTGAATAGC 59.540 44.000 31.87 1.01 40.49 2.97
1658 1848 5.961272 TCTATGAACGTTCACTGAATAGCA 58.039 37.500 31.87 15.37 40.49 3.49
1659 1849 6.573434 TCTATGAACGTTCACTGAATAGCAT 58.427 36.000 31.87 15.02 40.49 3.79
1660 1850 5.725110 ATGAACGTTCACTGAATAGCATC 57.275 39.130 31.87 0.00 40.49 3.91
1661 1851 4.565022 TGAACGTTCACTGAATAGCATCA 58.435 39.130 26.53 0.00 31.01 3.07
1662 1852 4.388773 TGAACGTTCACTGAATAGCATCAC 59.611 41.667 26.53 0.00 31.01 3.06
1663 1853 3.262420 ACGTTCACTGAATAGCATCACC 58.738 45.455 0.00 0.00 0.00 4.02
1718 1928 0.747852 TTTTCGGGAAGGCGCTTTTT 59.252 45.000 6.11 0.00 0.00 1.94
1731 1941 1.268778 GCTTTTTGTGTTCGGCGAGC 61.269 55.000 17.19 17.19 0.00 5.03
1856 2066 3.444805 GCTCTGCTCGACGAGGGT 61.445 66.667 25.31 0.00 0.00 4.34
2090 2300 2.653543 ACTACACCCCCTACATCCAA 57.346 50.000 0.00 0.00 0.00 3.53
2105 2315 2.126888 CAATTCGCACGCACACCC 60.127 61.111 0.00 0.00 0.00 4.61
2143 2353 3.182263 CTCCCAACCACACCCCCA 61.182 66.667 0.00 0.00 0.00 4.96
2185 2416 8.622948 TTGATTCCTACTTCTTTCCTTCTTTC 57.377 34.615 0.00 0.00 0.00 2.62
2189 2420 7.242322 TCCTACTTCTTTCCTTCTTTCCTAC 57.758 40.000 0.00 0.00 0.00 3.18
2190 2421 7.017531 TCCTACTTCTTTCCTTCTTTCCTACT 58.982 38.462 0.00 0.00 0.00 2.57
2191 2422 7.038941 TCCTACTTCTTTCCTTCTTTCCTACTG 60.039 40.741 0.00 0.00 0.00 2.74
2192 2423 5.309638 ACTTCTTTCCTTCTTTCCTACTGC 58.690 41.667 0.00 0.00 0.00 4.40
2193 2424 5.072464 ACTTCTTTCCTTCTTTCCTACTGCT 59.928 40.000 0.00 0.00 0.00 4.24
2194 2425 4.899502 TCTTTCCTTCTTTCCTACTGCTG 58.100 43.478 0.00 0.00 0.00 4.41
2195 2426 3.703001 TTCCTTCTTTCCTACTGCTGG 57.297 47.619 0.00 0.00 0.00 4.85
2196 2427 2.621070 TCCTTCTTTCCTACTGCTGGT 58.379 47.619 0.00 0.00 0.00 4.00
2197 2428 2.303022 TCCTTCTTTCCTACTGCTGGTG 59.697 50.000 0.00 0.00 0.00 4.17
2198 2429 2.039084 CCTTCTTTCCTACTGCTGGTGT 59.961 50.000 0.00 0.00 0.00 4.16
2213 2444 1.160989 GGTGTGTGTGTGTGTGTTCA 58.839 50.000 0.00 0.00 0.00 3.18
2224 2455 2.286294 GTGTGTGTTCAGTTCTGCTCTG 59.714 50.000 0.00 0.00 0.00 3.35
2227 2458 2.216898 GTGTTCAGTTCTGCTCTGCTT 58.783 47.619 0.00 0.00 33.48 3.91
2229 2460 3.065925 GTGTTCAGTTCTGCTCTGCTTTT 59.934 43.478 0.00 0.00 33.48 2.27
2260 3304 7.387948 TCAAGAATACAACTTTAAGGACAGAGC 59.612 37.037 0.00 0.00 0.00 4.09
2279 3509 8.218338 ACAGAGCATTTATTTGTCCAAGATAG 57.782 34.615 0.00 0.00 0.00 2.08
2335 3629 1.604604 GCAACTGCAGGGTACAAGAA 58.395 50.000 19.93 0.00 41.59 2.52
2405 3699 3.575351 GAGCTCGTCGTGTGGGCTT 62.575 63.158 0.00 0.00 33.13 4.35
2566 3860 4.387862 CCGCAACGATATGGTCTATTAACC 59.612 45.833 0.00 0.00 39.94 2.85
2585 3879 0.304705 CGGAAATCCAATTCGGCTCG 59.695 55.000 0.00 0.00 35.14 5.03
2586 3880 0.029433 GGAAATCCAATTCGGCTCGC 59.971 55.000 0.00 0.00 35.64 5.03
2587 3881 0.316196 GAAATCCAATTCGGCTCGCG 60.316 55.000 0.00 0.00 33.14 5.87
2588 3882 2.322999 AAATCCAATTCGGCTCGCGC 62.323 55.000 0.00 0.00 33.14 6.86
2801 4110 3.820557 AGGCAATGCTATACCATTTCGT 58.179 40.909 4.82 0.00 33.35 3.85
2814 4124 3.068024 ACCATTTCGTGTGCAAATTGTCT 59.932 39.130 0.00 0.00 0.00 3.41
2828 4138 7.756722 GTGCAAATTGTCTAGCATTCTTGTTAT 59.243 33.333 0.00 0.00 39.43 1.89
2853 4163 9.793259 ATACTAAAATGAACACCTGAAAAGAGA 57.207 29.630 0.00 0.00 0.00 3.10
2854 4164 7.931275 ACTAAAATGAACACCTGAAAAGAGAC 58.069 34.615 0.00 0.00 0.00 3.36
2855 4165 7.775561 ACTAAAATGAACACCTGAAAAGAGACT 59.224 33.333 0.00 0.00 0.00 3.24
2856 4166 9.273016 CTAAAATGAACACCTGAAAAGAGACTA 57.727 33.333 0.00 0.00 0.00 2.59
2857 4167 8.519799 AAAATGAACACCTGAAAAGAGACTAA 57.480 30.769 0.00 0.00 0.00 2.24
2859 4169 7.736447 ATGAACACCTGAAAAGAGACTAAAG 57.264 36.000 0.00 0.00 0.00 1.85
2860 4170 5.527582 TGAACACCTGAAAAGAGACTAAAGC 59.472 40.000 0.00 0.00 0.00 3.51
2861 4171 4.390264 ACACCTGAAAAGAGACTAAAGCC 58.610 43.478 0.00 0.00 0.00 4.35
2863 4173 3.653352 ACCTGAAAAGAGACTAAAGCCCT 59.347 43.478 0.00 0.00 0.00 5.19
2864 4174 4.104897 ACCTGAAAAGAGACTAAAGCCCTT 59.895 41.667 0.00 0.00 0.00 3.95
2969 5621 7.016268 GGATTTCCCTACCATCTTGTATCTGTA 59.984 40.741 0.00 0.00 0.00 2.74
2971 5623 4.825634 TCCCTACCATCTTGTATCTGTACG 59.174 45.833 0.00 0.00 33.36 3.67
2972 5624 4.022242 CCCTACCATCTTGTATCTGTACGG 60.022 50.000 0.00 0.00 33.36 4.02
2973 5625 3.454371 ACCATCTTGTATCTGTACGGC 57.546 47.619 0.00 0.00 33.36 5.68
2974 5626 2.764010 ACCATCTTGTATCTGTACGGCA 59.236 45.455 0.00 0.00 33.36 5.69
2975 5627 3.181475 ACCATCTTGTATCTGTACGGCAG 60.181 47.826 0.00 3.27 46.34 4.85
2977 5629 4.433615 CATCTTGTATCTGTACGGCAGTT 58.566 43.478 0.00 4.21 45.23 3.16
2978 5630 4.530710 TCTTGTATCTGTACGGCAGTTT 57.469 40.909 0.00 2.36 45.23 2.66
2979 5631 4.242475 TCTTGTATCTGTACGGCAGTTTG 58.758 43.478 0.00 0.00 45.23 2.93
2980 5632 3.945981 TGTATCTGTACGGCAGTTTGA 57.054 42.857 0.00 0.00 45.23 2.69
2981 5633 3.845178 TGTATCTGTACGGCAGTTTGAG 58.155 45.455 0.00 0.00 45.23 3.02
2982 5634 3.257375 TGTATCTGTACGGCAGTTTGAGT 59.743 43.478 0.00 0.00 45.23 3.41
2983 5635 4.460034 TGTATCTGTACGGCAGTTTGAGTA 59.540 41.667 0.00 0.00 45.23 2.59
2984 5636 4.737855 ATCTGTACGGCAGTTTGAGTAT 57.262 40.909 0.00 0.00 45.23 2.12
2985 5637 4.530710 TCTGTACGGCAGTTTGAGTATT 57.469 40.909 0.00 0.00 45.23 1.89
2986 5638 5.648178 TCTGTACGGCAGTTTGAGTATTA 57.352 39.130 0.00 0.00 45.23 0.98
2987 5639 6.216801 TCTGTACGGCAGTTTGAGTATTAT 57.783 37.500 0.00 0.00 45.23 1.28
2988 5640 6.636705 TCTGTACGGCAGTTTGAGTATTATT 58.363 36.000 0.00 0.00 45.23 1.40
2989 5641 7.101054 TCTGTACGGCAGTTTGAGTATTATTT 58.899 34.615 0.00 0.00 45.23 1.40
2990 5642 8.252417 TCTGTACGGCAGTTTGAGTATTATTTA 58.748 33.333 0.00 0.00 45.23 1.40
2991 5643 8.951787 TGTACGGCAGTTTGAGTATTATTTAT 57.048 30.769 0.00 0.00 0.00 1.40
2995 5647 9.386010 ACGGCAGTTTGAGTATTATTTATAACA 57.614 29.630 0.00 0.00 0.00 2.41
2996 5648 9.646336 CGGCAGTTTGAGTATTATTTATAACAC 57.354 33.333 0.00 0.00 0.00 3.32
3000 5652 9.333724 AGTTTGAGTATTATTTATAACACGGGG 57.666 33.333 0.00 0.00 0.00 5.73
3001 5653 9.328845 GTTTGAGTATTATTTATAACACGGGGA 57.671 33.333 0.00 0.00 0.00 4.81
3061 5713 0.937304 CCAACATTCTATCGGCACCG 59.063 55.000 1.73 1.73 41.35 4.94
3062 5714 0.304705 CAACATTCTATCGGCACCGC 59.695 55.000 3.66 0.00 39.59 5.68
3072 5724 0.595567 TCGGCACCGCGTACATAATC 60.596 55.000 4.92 0.00 39.59 1.75
3073 5725 1.850640 GGCACCGCGTACATAATCG 59.149 57.895 4.92 0.00 0.00 3.34
3074 5726 0.872881 GGCACCGCGTACATAATCGT 60.873 55.000 4.92 0.00 0.00 3.73
3075 5727 0.228742 GCACCGCGTACATAATCGTG 59.771 55.000 4.92 3.50 37.32 4.35
3077 5729 1.921887 CACCGCGTACATAATCGTGTT 59.078 47.619 4.92 0.00 36.10 3.32
3078 5730 1.921887 ACCGCGTACATAATCGTGTTG 59.078 47.619 4.92 0.00 36.10 3.33
3086 5745 6.245710 GCGTACATAATCGTGTTGAAACTTTC 59.754 38.462 0.00 0.00 33.62 2.62
3087 5746 7.285069 CGTACATAATCGTGTTGAAACTTTCA 58.715 34.615 0.00 0.00 38.04 2.69
3100 5759 5.850614 TGAAACTTTCAGTACTCCTACCAC 58.149 41.667 0.00 0.00 34.08 4.16
3101 5760 4.516365 AACTTTCAGTACTCCTACCACG 57.484 45.455 0.00 0.00 0.00 4.94
3142 5801 4.319839 GCTAGACTGAAAGGTTGCTTGAAC 60.320 45.833 0.00 0.00 39.30 3.18
3150 5809 7.821846 ACTGAAAGGTTGCTTGAACAAAAATTA 59.178 29.630 0.00 0.00 39.30 1.40
3151 5810 8.553459 TGAAAGGTTGCTTGAACAAAAATTAA 57.447 26.923 0.00 0.00 36.12 1.40
3152 5811 9.003658 TGAAAGGTTGCTTGAACAAAAATTAAA 57.996 25.926 0.00 0.00 36.12 1.52
3153 5812 9.833182 GAAAGGTTGCTTGAACAAAAATTAAAA 57.167 25.926 0.00 0.00 36.12 1.52
3201 5869 4.192317 AGTCCAATCAGATAAGGCGAAAC 58.808 43.478 0.00 0.00 0.00 2.78
3215 5883 2.157085 GGCGAAACTCAGTTAGGAAACG 59.843 50.000 0.00 0.00 40.73 3.60
3240 5908 5.304357 CCCAATTACAAAGAAAACAGGGAGT 59.696 40.000 0.00 0.00 34.49 3.85
3310 5981 9.621629 TCTCACAAAAAGAAAAGTCACCTATTA 57.378 29.630 0.00 0.00 0.00 0.98
3353 6025 1.165907 TTGGCGACACAGCTCCAAAG 61.166 55.000 0.00 0.00 42.67 2.77
3425 6108 7.291566 TCACCTAGTATTTTCAGTTTTCCCAA 58.708 34.615 0.00 0.00 0.00 4.12
3478 6161 5.649782 ACAGAATCAAAGGCTACAAATGG 57.350 39.130 0.00 0.00 0.00 3.16
3496 6179 1.077212 GGTGTGGAGGCTCATGCAT 60.077 57.895 17.69 0.00 41.91 3.96
3540 6231 2.567615 GCTGGTAAAGAAGACCTCCTCA 59.432 50.000 0.00 0.00 37.88 3.86
3564 6255 1.902840 CGCGTTCAACACCTGTTTTT 58.097 45.000 0.00 0.00 35.83 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.500680 ACTACCAAATTAAGTGCACACCG 59.499 43.478 21.04 0.00 0.00 4.94
138 139 2.732597 CGAAAACCTGAACAACGGCAAA 60.733 45.455 0.00 0.00 0.00 3.68
144 145 0.317519 CGGGCGAAAACCTGAACAAC 60.318 55.000 0.00 0.00 38.48 3.32
167 168 7.195646 CACACTGCTCAGTTTATTGAAGAAAA 58.804 34.615 0.00 0.00 40.20 2.29
274 276 2.612721 CGATGACATGGACAGACACCAA 60.613 50.000 0.00 0.00 40.93 3.67
280 282 2.379005 AGCTACGATGACATGGACAGA 58.621 47.619 4.27 0.00 0.00 3.41
284 286 4.944317 CCTATCTAGCTACGATGACATGGA 59.056 45.833 4.27 0.00 0.00 3.41
292 294 4.166337 TGGCTATCCCTATCTAGCTACGAT 59.834 45.833 9.63 9.63 40.17 3.73
299 301 5.960811 TGGAGATTTGGCTATCCCTATCTAG 59.039 44.000 0.00 0.00 36.48 2.43
302 304 5.505181 TTGGAGATTTGGCTATCCCTATC 57.495 43.478 0.00 0.00 0.00 2.08
303 305 7.588866 TTATTGGAGATTTGGCTATCCCTAT 57.411 36.000 0.00 0.00 0.00 2.57
304 306 7.588866 ATTATTGGAGATTTGGCTATCCCTA 57.411 36.000 0.00 0.00 0.00 3.53
306 308 7.890655 ACTAATTATTGGAGATTTGGCTATCCC 59.109 37.037 0.00 0.00 0.00 3.85
331 338 2.959707 CTCACACTCCCCAGATAGGTAC 59.040 54.545 0.00 0.00 34.66 3.34
333 340 1.362932 ACTCACACTCCCCAGATAGGT 59.637 52.381 0.00 0.00 34.66 3.08
341 356 2.359230 GCAGCACTCACACTCCCC 60.359 66.667 0.00 0.00 0.00 4.81
350 365 0.396417 TAGAGAGAGGGGCAGCACTC 60.396 60.000 8.00 8.00 0.00 3.51
391 406 2.434336 TGGGAAGAAGGGATCATACGTG 59.566 50.000 0.00 0.00 0.00 4.49
412 427 1.840635 GGCTCCAGGGTTAGAGTCAAT 59.159 52.381 0.00 0.00 34.79 2.57
477 492 4.960938 TCTATGATGCACCTTCATGTACC 58.039 43.478 10.84 0.00 35.50 3.34
544 560 3.691118 CCTCGCTGATTCCATGAAAGAAA 59.309 43.478 0.00 0.00 0.00 2.52
590 606 1.136110 TCGTGATCTGGATGCGCTTAA 59.864 47.619 9.73 0.00 0.00 1.85
591 607 0.744281 TCGTGATCTGGATGCGCTTA 59.256 50.000 9.73 0.00 0.00 3.09
614 630 3.541632 CATTAATTACCACGCTCCCTGT 58.458 45.455 0.00 0.00 0.00 4.00
646 662 1.078497 ATTGACAATCGCTCCCGCA 60.078 52.632 0.00 0.00 35.30 5.69
717 733 7.513371 AATTACCAGTTTGTTAATCACGGAA 57.487 32.000 0.00 0.00 0.00 4.30
718 734 7.228906 TGAAATTACCAGTTTGTTAATCACGGA 59.771 33.333 0.00 0.00 0.00 4.69
721 737 9.139174 CCATGAAATTACCAGTTTGTTAATCAC 57.861 33.333 0.00 0.00 0.00 3.06
722 738 8.310382 CCCATGAAATTACCAGTTTGTTAATCA 58.690 33.333 0.00 0.00 0.00 2.57
728 744 3.260632 GCCCCATGAAATTACCAGTTTGT 59.739 43.478 0.00 0.00 0.00 2.83
729 745 3.675775 CGCCCCATGAAATTACCAGTTTG 60.676 47.826 0.00 0.00 0.00 2.93
743 759 4.873129 CCTCGACGACGCCCCATG 62.873 72.222 1.48 0.00 39.58 3.66
764 780 5.933463 CACCTAGACGGAAGGAGTACTATAG 59.067 48.000 0.00 0.00 37.57 1.31
765 781 5.604231 TCACCTAGACGGAAGGAGTACTATA 59.396 44.000 0.00 0.00 37.57 1.31
766 782 4.411540 TCACCTAGACGGAAGGAGTACTAT 59.588 45.833 0.00 0.00 37.57 2.12
767 783 3.776969 TCACCTAGACGGAAGGAGTACTA 59.223 47.826 0.00 0.00 37.57 1.82
768 784 2.575279 TCACCTAGACGGAAGGAGTACT 59.425 50.000 0.00 0.00 37.57 2.73
769 785 2.996631 TCACCTAGACGGAAGGAGTAC 58.003 52.381 6.93 0.00 37.57 2.73
770 786 3.726557 TTCACCTAGACGGAAGGAGTA 57.273 47.619 6.93 0.00 37.57 2.59
771 787 2.599408 TTCACCTAGACGGAAGGAGT 57.401 50.000 6.93 0.00 37.57 3.85
772 788 2.362717 GGATTCACCTAGACGGAAGGAG 59.637 54.545 6.93 0.00 37.57 3.69
773 789 2.291996 TGGATTCACCTAGACGGAAGGA 60.292 50.000 6.93 0.00 37.57 3.36
774 790 2.108168 TGGATTCACCTAGACGGAAGG 58.892 52.381 0.00 0.00 40.20 3.46
775 791 3.133003 ACATGGATTCACCTAGACGGAAG 59.867 47.826 0.00 0.00 39.86 3.46
776 792 3.104512 ACATGGATTCACCTAGACGGAA 58.895 45.455 0.00 0.00 39.86 4.30
777 793 2.430694 CACATGGATTCACCTAGACGGA 59.569 50.000 0.00 0.00 39.86 4.69
778 794 2.826428 CACATGGATTCACCTAGACGG 58.174 52.381 0.00 0.00 39.86 4.79
779 795 2.205074 GCACATGGATTCACCTAGACG 58.795 52.381 0.00 0.00 39.86 4.18
780 796 2.939103 GTGCACATGGATTCACCTAGAC 59.061 50.000 13.17 0.00 39.86 2.59
781 797 2.092968 GGTGCACATGGATTCACCTAGA 60.093 50.000 20.43 0.00 44.09 2.43
782 798 2.292267 GGTGCACATGGATTCACCTAG 58.708 52.381 20.43 0.00 44.09 3.02
783 799 1.406751 CGGTGCACATGGATTCACCTA 60.407 52.381 20.43 0.00 44.99 3.08
784 800 0.677731 CGGTGCACATGGATTCACCT 60.678 55.000 20.43 0.00 44.99 4.00
785 801 0.960364 ACGGTGCACATGGATTCACC 60.960 55.000 20.43 14.18 44.04 4.02
786 802 0.168788 CACGGTGCACATGGATTCAC 59.831 55.000 20.43 0.00 0.00 3.18
787 803 0.036022 TCACGGTGCACATGGATTCA 59.964 50.000 20.43 0.00 0.00 2.57
788 804 0.447801 GTCACGGTGCACATGGATTC 59.552 55.000 20.43 0.00 0.00 2.52
789 805 0.960364 GGTCACGGTGCACATGGATT 60.960 55.000 20.43 0.00 0.00 3.01
790 806 1.377202 GGTCACGGTGCACATGGAT 60.377 57.895 20.43 0.00 0.00 3.41
791 807 2.031919 GGTCACGGTGCACATGGA 59.968 61.111 20.43 9.31 0.00 3.41
792 808 1.855213 CTTGGTCACGGTGCACATGG 61.855 60.000 20.43 9.69 0.00 3.66
793 809 1.575922 CTTGGTCACGGTGCACATG 59.424 57.895 20.43 16.15 0.00 3.21
794 810 1.600636 CCTTGGTCACGGTGCACAT 60.601 57.895 20.43 2.58 0.00 3.21
795 811 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
796 812 2.110213 TCCTTGGTCACGGTGCAC 59.890 61.111 8.80 8.80 0.00 4.57
797 813 1.978455 AAGTCCTTGGTCACGGTGCA 61.978 55.000 2.51 0.00 0.00 4.57
798 814 0.034337 TAAGTCCTTGGTCACGGTGC 59.966 55.000 2.51 0.00 0.00 5.01
799 815 2.224209 ACTTAAGTCCTTGGTCACGGTG 60.224 50.000 1.12 0.56 0.00 4.94
800 816 2.044758 ACTTAAGTCCTTGGTCACGGT 58.955 47.619 1.12 0.00 0.00 4.83
801 817 2.806244 CAACTTAAGTCCTTGGTCACGG 59.194 50.000 8.95 0.00 0.00 4.94
802 818 3.247648 CACAACTTAAGTCCTTGGTCACG 59.752 47.826 8.95 0.00 0.00 4.35
803 819 3.003378 GCACAACTTAAGTCCTTGGTCAC 59.997 47.826 8.95 0.00 0.00 3.67
804 820 3.211045 GCACAACTTAAGTCCTTGGTCA 58.789 45.455 8.95 0.00 0.00 4.02
805 821 3.003378 GTGCACAACTTAAGTCCTTGGTC 59.997 47.826 13.17 1.35 0.00 4.02
806 822 2.949644 GTGCACAACTTAAGTCCTTGGT 59.050 45.455 13.17 0.19 0.00 3.67
807 823 2.293399 GGTGCACAACTTAAGTCCTTGG 59.707 50.000 20.43 0.00 0.00 3.61
808 824 2.032030 CGGTGCACAACTTAAGTCCTTG 60.032 50.000 20.43 6.41 0.00 3.61
809 825 2.218603 CGGTGCACAACTTAAGTCCTT 58.781 47.619 20.43 0.00 0.00 3.36
810 826 1.140252 ACGGTGCACAACTTAAGTCCT 59.860 47.619 20.43 0.00 0.00 3.85
811 827 1.263217 CACGGTGCACAACTTAAGTCC 59.737 52.381 20.43 3.65 0.00 3.85
812 828 2.033151 GTCACGGTGCACAACTTAAGTC 60.033 50.000 20.43 0.00 0.00 3.01
813 829 1.937899 GTCACGGTGCACAACTTAAGT 59.062 47.619 20.43 1.12 0.00 2.24
814 830 1.263217 GGTCACGGTGCACAACTTAAG 59.737 52.381 20.43 0.00 0.00 1.85
815 831 1.301423 GGTCACGGTGCACAACTTAA 58.699 50.000 20.43 0.00 0.00 1.85
816 832 0.178301 TGGTCACGGTGCACAACTTA 59.822 50.000 20.43 0.00 0.00 2.24
817 833 0.678366 TTGGTCACGGTGCACAACTT 60.678 50.000 20.43 0.00 0.00 2.66
818 834 1.078072 TTGGTCACGGTGCACAACT 60.078 52.632 20.43 0.00 0.00 3.16
819 835 1.355210 CTTGGTCACGGTGCACAAC 59.645 57.895 20.43 10.47 0.00 3.32
820 836 1.821759 CCTTGGTCACGGTGCACAA 60.822 57.895 20.43 9.76 0.00 3.33
821 837 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
822 838 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
823 839 2.425592 CTCCTTGGTCACGGTGCA 59.574 61.111 2.51 0.00 0.00 4.57
824 840 2.358737 CCTCCTTGGTCACGGTGC 60.359 66.667 2.51 0.00 0.00 5.01
825 841 1.293498 CTCCTCCTTGGTCACGGTG 59.707 63.158 0.56 0.56 37.07 4.94
826 842 1.913762 CCTCCTCCTTGGTCACGGT 60.914 63.158 0.00 0.00 37.07 4.83
827 843 1.192146 TTCCTCCTCCTTGGTCACGG 61.192 60.000 0.00 0.00 37.07 4.94
828 844 0.685097 TTTCCTCCTCCTTGGTCACG 59.315 55.000 0.00 0.00 37.07 4.35
829 845 2.951229 TTTTCCTCCTCCTTGGTCAC 57.049 50.000 0.00 0.00 37.07 3.67
846 862 8.672823 ATTACAACTTAAGGTCTCTCGTTTTT 57.327 30.769 7.53 0.00 0.00 1.94
847 863 7.387122 GGATTACAACTTAAGGTCTCTCGTTTT 59.613 37.037 7.53 0.00 0.00 2.43
848 864 6.872547 GGATTACAACTTAAGGTCTCTCGTTT 59.127 38.462 7.53 0.00 0.00 3.60
849 865 6.014840 TGGATTACAACTTAAGGTCTCTCGTT 60.015 38.462 7.53 0.00 0.00 3.85
850 866 5.479375 TGGATTACAACTTAAGGTCTCTCGT 59.521 40.000 7.53 0.00 0.00 4.18
851 867 5.962433 TGGATTACAACTTAAGGTCTCTCG 58.038 41.667 7.53 0.00 0.00 4.04
852 868 7.278868 CACATGGATTACAACTTAAGGTCTCTC 59.721 40.741 7.53 0.00 0.00 3.20
853 869 7.106239 CACATGGATTACAACTTAAGGTCTCT 58.894 38.462 7.53 0.00 0.00 3.10
854 870 6.183360 GCACATGGATTACAACTTAAGGTCTC 60.183 42.308 7.53 0.00 0.00 3.36
855 871 5.648092 GCACATGGATTACAACTTAAGGTCT 59.352 40.000 7.53 0.00 0.00 3.85
856 872 5.163652 GGCACATGGATTACAACTTAAGGTC 60.164 44.000 7.53 0.00 0.00 3.85
857 873 4.705023 GGCACATGGATTACAACTTAAGGT 59.295 41.667 7.53 0.00 0.00 3.50
858 874 4.097892 GGGCACATGGATTACAACTTAAGG 59.902 45.833 7.53 0.00 0.00 2.69
859 875 4.097892 GGGGCACATGGATTACAACTTAAG 59.902 45.833 0.00 0.00 0.00 1.85
860 876 4.020543 GGGGCACATGGATTACAACTTAA 58.979 43.478 0.00 0.00 0.00 1.85
861 877 3.626930 GGGGCACATGGATTACAACTTA 58.373 45.455 0.00 0.00 0.00 2.24
862 878 2.456577 GGGGCACATGGATTACAACTT 58.543 47.619 0.00 0.00 0.00 2.66
863 879 1.681780 CGGGGCACATGGATTACAACT 60.682 52.381 0.00 0.00 0.00 3.16
864 880 0.738389 CGGGGCACATGGATTACAAC 59.262 55.000 0.00 0.00 0.00 3.32
865 881 1.034838 GCGGGGCACATGGATTACAA 61.035 55.000 0.00 0.00 0.00 2.41
866 882 1.453015 GCGGGGCACATGGATTACA 60.453 57.895 0.00 0.00 0.00 2.41
867 883 0.107831 TAGCGGGGCACATGGATTAC 59.892 55.000 0.00 0.00 0.00 1.89
868 884 1.064003 ATAGCGGGGCACATGGATTA 58.936 50.000 0.00 0.00 0.00 1.75
869 885 1.064003 TATAGCGGGGCACATGGATT 58.936 50.000 0.00 0.00 0.00 3.01
870 886 1.289160 ATATAGCGGGGCACATGGAT 58.711 50.000 0.00 0.00 0.00 3.41
871 887 1.945580 TATATAGCGGGGCACATGGA 58.054 50.000 0.00 0.00 0.00 3.41
872 888 2.290008 TGTTATATAGCGGGGCACATGG 60.290 50.000 0.00 0.00 0.00 3.66
873 889 3.052455 TGTTATATAGCGGGGCACATG 57.948 47.619 0.00 0.00 0.00 3.21
874 890 3.408634 GTTGTTATATAGCGGGGCACAT 58.591 45.455 0.00 0.00 0.00 3.21
875 891 2.485835 GGTTGTTATATAGCGGGGCACA 60.486 50.000 0.00 0.00 0.00 4.57
876 892 2.148768 GGTTGTTATATAGCGGGGCAC 58.851 52.381 0.00 0.00 0.00 5.01
877 893 1.072648 GGGTTGTTATATAGCGGGGCA 59.927 52.381 0.00 0.00 0.00 5.36
878 894 1.612462 GGGGTTGTTATATAGCGGGGC 60.612 57.143 0.00 0.00 0.00 5.80
879 895 1.003928 GGGGGTTGTTATATAGCGGGG 59.996 57.143 0.00 0.00 0.00 5.73
880 896 1.982958 AGGGGGTTGTTATATAGCGGG 59.017 52.381 0.00 0.00 0.00 6.13
881 897 4.828829 CTTAGGGGGTTGTTATATAGCGG 58.171 47.826 0.00 0.00 0.00 5.52
882 898 4.251268 GCTTAGGGGGTTGTTATATAGCG 58.749 47.826 0.00 0.00 0.00 4.26
883 899 5.001874 GTGCTTAGGGGGTTGTTATATAGC 58.998 45.833 0.00 0.00 0.00 2.97
884 900 5.235516 CGTGCTTAGGGGGTTGTTATATAG 58.764 45.833 0.00 0.00 0.00 1.31
885 901 4.503643 GCGTGCTTAGGGGGTTGTTATATA 60.504 45.833 0.00 0.00 0.00 0.86
886 902 3.746432 GCGTGCTTAGGGGGTTGTTATAT 60.746 47.826 0.00 0.00 0.00 0.86
907 923 1.813178 GGGACAGCTACAAGAAAAGGC 59.187 52.381 0.00 0.00 0.00 4.35
944 960 0.468226 AGTGTGCGGAGGAAACAAGA 59.532 50.000 0.00 0.00 39.13 3.02
953 969 0.874175 TCACGAAACAGTGTGCGGAG 60.874 55.000 19.07 12.73 42.40 4.63
988 1005 0.392193 GTCTCCATGGTCACAGCCAG 60.392 60.000 12.58 0.00 42.47 4.85
993 1010 0.891904 TCGTCGTCTCCATGGTCACA 60.892 55.000 12.58 0.00 0.00 3.58
1039 1056 2.110967 CCAGGCACAAGAGGATGCG 61.111 63.158 0.00 0.00 43.02 4.73
1249 1281 1.516603 GACGGCAGAGAAGGTACGC 60.517 63.158 0.00 0.00 0.00 4.42
1257 1289 0.679960 TTGGATCGAGACGGCAGAGA 60.680 55.000 0.00 0.00 0.00 3.10
1283 1315 3.313012 TCATCCATTTCGACTGACGTT 57.687 42.857 0.00 0.00 43.13 3.99
1311 1359 7.321984 CGTGCATACATACATCAAATCAATCAC 59.678 37.037 0.00 0.00 0.00 3.06
1321 1369 2.482864 CTGCCGTGCATACATACATCA 58.517 47.619 0.00 0.00 38.13 3.07
1327 1379 2.896854 CGGCTGCCGTGCATACAT 60.897 61.111 31.72 0.00 42.73 2.29
1523 1635 2.815589 GCAAATGGTGTCCTTGACCTCT 60.816 50.000 0.00 0.00 34.26 3.69
1535 1647 1.750399 CGGGGAGGAGCAAATGGTG 60.750 63.158 0.00 0.00 0.00 4.17
1564 1676 2.124122 TGTATCGATCGGCGTTCATTG 58.876 47.619 16.41 3.60 41.80 2.82
1581 1708 5.106317 GGCAAGAAAATTCAGAACCGATGTA 60.106 40.000 0.00 0.00 0.00 2.29
1595 1785 5.764686 GGAACATTTTTCAGGGCAAGAAAAT 59.235 36.000 14.36 5.94 42.54 1.82
1604 1794 3.814842 GGCAAAAGGAACATTTTTCAGGG 59.185 43.478 0.00 0.00 30.01 4.45
1607 1797 4.275443 GCATGGCAAAAGGAACATTTTTCA 59.725 37.500 0.00 0.00 30.01 2.69
1608 1798 4.516321 AGCATGGCAAAAGGAACATTTTTC 59.484 37.500 0.00 0.00 30.01 2.29
1609 1799 4.463070 AGCATGGCAAAAGGAACATTTTT 58.537 34.783 0.00 0.00 30.01 1.94
1610 1800 4.067192 GAGCATGGCAAAAGGAACATTTT 58.933 39.130 0.00 0.00 32.65 1.82
1611 1801 3.557686 GGAGCATGGCAAAAGGAACATTT 60.558 43.478 0.00 0.00 0.00 2.32
1612 1802 2.027837 GGAGCATGGCAAAAGGAACATT 60.028 45.455 0.00 0.00 0.00 2.71
1613 1803 1.551883 GGAGCATGGCAAAAGGAACAT 59.448 47.619 0.00 0.00 0.00 2.71
1615 1805 0.247460 GGGAGCATGGCAAAAGGAAC 59.753 55.000 0.00 0.00 0.00 3.62
1618 1808 0.324091 AGAGGGAGCATGGCAAAAGG 60.324 55.000 0.00 0.00 0.00 3.11
1624 1814 1.875576 CGTTCATAGAGGGAGCATGGC 60.876 57.143 0.00 0.00 0.00 4.40
1625 1815 1.414181 ACGTTCATAGAGGGAGCATGG 59.586 52.381 0.00 0.00 0.00 3.66
1626 1816 2.898729 ACGTTCATAGAGGGAGCATG 57.101 50.000 0.00 0.00 0.00 4.06
1627 1817 2.766263 TGAACGTTCATAGAGGGAGCAT 59.234 45.455 26.53 0.00 31.01 3.79
1628 1818 2.094182 GTGAACGTTCATAGAGGGAGCA 60.094 50.000 31.81 4.02 39.73 4.26
1629 1819 2.166664 AGTGAACGTTCATAGAGGGAGC 59.833 50.000 31.81 16.40 39.73 4.70
1630 1820 3.444034 TCAGTGAACGTTCATAGAGGGAG 59.556 47.826 31.81 15.73 39.73 4.30
1631 1821 3.427573 TCAGTGAACGTTCATAGAGGGA 58.572 45.455 31.81 19.28 39.73 4.20
1632 1822 3.868757 TCAGTGAACGTTCATAGAGGG 57.131 47.619 31.81 17.59 39.73 4.30
1633 1823 5.460419 GCTATTCAGTGAACGTTCATAGAGG 59.540 44.000 31.81 22.45 39.73 3.69
1634 1824 6.036470 TGCTATTCAGTGAACGTTCATAGAG 58.964 40.000 31.81 22.38 39.73 2.43
1635 1825 5.961272 TGCTATTCAGTGAACGTTCATAGA 58.039 37.500 31.81 26.96 39.73 1.98
1636 1826 6.476706 TGATGCTATTCAGTGAACGTTCATAG 59.523 38.462 31.81 26.51 39.73 2.23
1637 1827 6.255670 GTGATGCTATTCAGTGAACGTTCATA 59.744 38.462 31.81 18.92 39.73 2.15
1638 1828 5.063944 GTGATGCTATTCAGTGAACGTTCAT 59.936 40.000 31.81 18.81 39.73 2.57
1639 1829 4.388773 GTGATGCTATTCAGTGAACGTTCA 59.611 41.667 26.53 26.53 34.20 3.18
1640 1830 4.201724 GGTGATGCTATTCAGTGAACGTTC 60.202 45.833 21.42 21.42 0.00 3.95
1641 1831 3.684788 GGTGATGCTATTCAGTGAACGTT 59.315 43.478 7.96 0.00 0.00 3.99
1642 1832 3.262420 GGTGATGCTATTCAGTGAACGT 58.738 45.455 7.96 0.00 0.00 3.99
1643 1833 3.261580 TGGTGATGCTATTCAGTGAACG 58.738 45.455 7.96 3.68 0.00 3.95
1644 1834 5.627499 TTTGGTGATGCTATTCAGTGAAC 57.373 39.130 7.96 0.00 0.00 3.18
1645 1835 6.647334 TTTTTGGTGATGCTATTCAGTGAA 57.353 33.333 8.27 8.27 0.00 3.18
1718 1928 4.680237 CCCAGCTCGCCGAACACA 62.680 66.667 0.00 0.00 0.00 3.72
1731 1941 2.813908 GTAGTCGTTGCCGCCCAG 60.814 66.667 0.00 0.00 0.00 4.45
1766 1976 1.483595 CCTTGTCCAGGCTCCACTCA 61.484 60.000 0.00 0.00 35.13 3.41
2090 2300 4.634703 TGGGGTGTGCGTGCGAAT 62.635 61.111 0.00 0.00 0.00 3.34
2143 2353 8.655935 AGGAATCAAATAAGGAACAAGACATT 57.344 30.769 0.00 0.00 0.00 2.71
2181 2412 2.146342 CACACACCAGCAGTAGGAAAG 58.854 52.381 0.00 0.00 0.00 2.62
2182 2413 1.488812 ACACACACCAGCAGTAGGAAA 59.511 47.619 0.00 0.00 0.00 3.13
2183 2414 1.128200 ACACACACCAGCAGTAGGAA 58.872 50.000 0.00 0.00 0.00 3.36
2185 2416 0.106708 ACACACACACCAGCAGTAGG 59.893 55.000 0.00 0.00 0.00 3.18
2189 2420 1.026182 ACACACACACACACCAGCAG 61.026 55.000 0.00 0.00 0.00 4.24
2190 2421 1.002746 ACACACACACACACCAGCA 60.003 52.632 0.00 0.00 0.00 4.41
2191 2422 1.305219 ACACACACACACACACCAGC 61.305 55.000 0.00 0.00 0.00 4.85
2192 2423 1.130373 GAACACACACACACACACCAG 59.870 52.381 0.00 0.00 0.00 4.00
2193 2424 1.160989 GAACACACACACACACACCA 58.839 50.000 0.00 0.00 0.00 4.17
2194 2425 1.130373 CTGAACACACACACACACACC 59.870 52.381 0.00 0.00 0.00 4.16
2195 2426 1.804151 ACTGAACACACACACACACAC 59.196 47.619 0.00 0.00 0.00 3.82
2196 2427 2.177394 ACTGAACACACACACACACA 57.823 45.000 0.00 0.00 0.00 3.72
2197 2428 2.742053 AGAACTGAACACACACACACAC 59.258 45.455 0.00 0.00 0.00 3.82
2198 2429 2.741517 CAGAACTGAACACACACACACA 59.258 45.455 0.00 0.00 0.00 3.72
2233 2464 9.273016 CTCTGTCCTTAAAGTTGTATTCTTGAA 57.727 33.333 0.00 0.00 0.00 2.69
2234 2465 7.387948 GCTCTGTCCTTAAAGTTGTATTCTTGA 59.612 37.037 0.00 0.00 0.00 3.02
2235 2466 7.173218 TGCTCTGTCCTTAAAGTTGTATTCTTG 59.827 37.037 0.00 0.00 0.00 3.02
2547 3841 6.409524 TTCCGGTTAATAGACCATATCGTT 57.590 37.500 0.00 0.00 39.78 3.85
2566 3860 0.304705 CGAGCCGAATTGGATTTCCG 59.695 55.000 0.00 0.00 42.00 4.30
2801 4110 5.009911 ACAAGAATGCTAGACAATTTGCACA 59.990 36.000 0.00 0.00 38.29 4.57
2828 4138 9.052759 GTCTCTTTTCAGGTGTTCATTTTAGTA 57.947 33.333 0.00 0.00 0.00 1.82
2834 4144 7.255277 GCTTTAGTCTCTTTTCAGGTGTTCATT 60.255 37.037 0.00 0.00 0.00 2.57
2842 4152 4.293662 AGGGCTTTAGTCTCTTTTCAGG 57.706 45.455 0.00 0.00 0.00 3.86
2887 4197 2.025887 AGCCAGGGGTAAAATCTGTCAG 60.026 50.000 0.00 0.00 0.00 3.51
2922 4234 3.128415 CCCAAAACAAGCAAACCAAAAGG 59.872 43.478 0.00 0.00 0.00 3.11
2952 4264 3.955551 TGCCGTACAGATACAAGATGGTA 59.044 43.478 0.00 0.00 0.00 3.25
2969 5621 9.386010 TGTTATAAATAATACTCAAACTGCCGT 57.614 29.630 0.00 0.00 0.00 5.68
2971 5623 9.646336 CGTGTTATAAATAATACTCAAACTGCC 57.354 33.333 7.66 0.00 33.75 4.85
2972 5624 9.646336 CCGTGTTATAAATAATACTCAAACTGC 57.354 33.333 7.66 0.00 33.75 4.40
2974 5626 9.333724 CCCCGTGTTATAAATAATACTCAAACT 57.666 33.333 7.66 0.00 33.75 2.66
2975 5627 9.328845 TCCCCGTGTTATAAATAATACTCAAAC 57.671 33.333 7.66 0.00 33.75 2.93
2977 5629 9.902684 TTTCCCCGTGTTATAAATAATACTCAA 57.097 29.630 7.66 0.00 33.75 3.02
2978 5630 9.902684 TTTTCCCCGTGTTATAAATAATACTCA 57.097 29.630 7.66 0.00 33.75 3.41
2981 5633 9.734620 GGTTTTTCCCCGTGTTATAAATAATAC 57.265 33.333 0.00 0.85 32.93 1.89
2982 5634 9.697990 AGGTTTTTCCCCGTGTTATAAATAATA 57.302 29.630 0.00 0.00 36.75 0.98
2983 5635 8.471609 CAGGTTTTTCCCCGTGTTATAAATAAT 58.528 33.333 0.00 0.00 36.75 1.28
2984 5636 7.450944 ACAGGTTTTTCCCCGTGTTATAAATAA 59.549 33.333 0.00 0.00 36.75 1.40
2985 5637 6.947158 ACAGGTTTTTCCCCGTGTTATAAATA 59.053 34.615 0.00 0.00 36.75 1.40
2986 5638 5.776208 ACAGGTTTTTCCCCGTGTTATAAAT 59.224 36.000 0.00 0.00 36.75 1.40
2987 5639 5.139001 ACAGGTTTTTCCCCGTGTTATAAA 58.861 37.500 0.00 0.00 36.75 1.40
2988 5640 4.727677 ACAGGTTTTTCCCCGTGTTATAA 58.272 39.130 0.00 0.00 36.75 0.98
2989 5641 4.370094 ACAGGTTTTTCCCCGTGTTATA 57.630 40.909 0.00 0.00 36.75 0.98
2990 5642 3.232720 ACAGGTTTTTCCCCGTGTTAT 57.767 42.857 0.00 0.00 36.75 1.89
2991 5643 2.732844 ACAGGTTTTTCCCCGTGTTA 57.267 45.000 0.00 0.00 36.75 2.41
2992 5644 1.855295 AACAGGTTTTTCCCCGTGTT 58.145 45.000 0.00 0.00 36.75 3.32
2993 5645 1.855295 AAACAGGTTTTTCCCCGTGT 58.145 45.000 0.00 0.00 36.75 4.49
2994 5646 2.166664 TCAAAACAGGTTTTTCCCCGTG 59.833 45.455 7.38 0.00 40.45 4.94
2995 5647 2.429250 CTCAAAACAGGTTTTTCCCCGT 59.571 45.455 7.38 0.00 40.45 5.28
2996 5648 2.691011 TCTCAAAACAGGTTTTTCCCCG 59.309 45.455 7.38 0.00 40.45 5.73
3000 5652 5.812127 AGCAACATCTCAAAACAGGTTTTTC 59.188 36.000 7.38 0.00 40.45 2.29
3001 5653 5.733676 AGCAACATCTCAAAACAGGTTTTT 58.266 33.333 7.38 0.00 40.45 1.94
3061 5713 5.199424 AGTTTCAACACGATTATGTACGC 57.801 39.130 0.00 0.00 30.75 4.42
3062 5714 7.285069 TGAAAGTTTCAACACGATTATGTACG 58.715 34.615 15.92 0.00 36.59 3.67
3086 5745 0.179134 GCTGCGTGGTAGGAGTACTG 60.179 60.000 0.00 0.00 31.83 2.74
3087 5746 1.321074 GGCTGCGTGGTAGGAGTACT 61.321 60.000 0.00 0.00 31.83 2.73
3101 5760 3.862063 CTTCAACACACGCGGCTGC 62.862 63.158 12.47 7.70 37.91 5.25
3109 5768 4.212214 CCTTTCAGTCTAGCTTCAACACAC 59.788 45.833 0.00 0.00 0.00 3.82
3160 5828 4.538738 GACTCTCCTCCTATACACCTTGT 58.461 47.826 0.00 0.00 0.00 3.16
3171 5839 3.704545 ATCTGATTGGACTCTCCTCCT 57.295 47.619 0.00 0.00 37.46 3.69
3201 5869 2.178912 TTGGGCGTTTCCTAACTGAG 57.821 50.000 0.00 0.00 29.51 3.35
3215 5883 4.039852 TCCCTGTTTTCTTTGTAATTGGGC 59.960 41.667 0.00 0.00 0.00 5.36
3316 5987 3.383825 GCCAAAATGCAGGAGAGAATCAT 59.616 43.478 0.00 0.00 37.82 2.45
3329 6000 0.730494 GAGCTGTGTCGCCAAAATGC 60.730 55.000 0.00 0.00 0.00 3.56
3331 6002 0.537143 TGGAGCTGTGTCGCCAAAAT 60.537 50.000 0.00 0.00 32.95 1.82
3478 6161 1.077212 ATGCATGAGCCTCCACACC 60.077 57.895 0.00 0.00 41.13 4.16
3496 6179 1.822371 TCATATCGGCTATAAGCGGCA 59.178 47.619 1.45 0.00 43.62 5.69
3499 6182 4.026228 CAGCATTCATATCGGCTATAAGCG 60.026 45.833 0.00 0.00 43.62 4.68
3540 6231 3.419759 GGTGTTGAACGCGCCGAT 61.420 61.111 5.73 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.