Multiple sequence alignment - TraesCS3B01G608200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G608200 chr3B 100.000 6589 0 0 1001 7589 826645944 826652532 0.000000e+00 12168.0
1 TraesCS3B01G608200 chr3B 94.311 2742 113 24 1233 3968 826621173 826623877 0.000000e+00 4159.0
2 TraesCS3B01G608200 chr3B 92.063 1197 54 20 1001 2177 826615072 826616247 0.000000e+00 1646.0
3 TraesCS3B01G608200 chr3B 96.711 821 23 2 4062 4881 826623876 826624693 0.000000e+00 1363.0
4 TraesCS3B01G608200 chr3B 96.224 821 27 2 4062 4881 826595834 826596651 0.000000e+00 1341.0
5 TraesCS3B01G608200 chr3B 95.981 821 29 2 4062 4881 826455423 826456240 0.000000e+00 1330.0
6 TraesCS3B01G608200 chr3B 100.000 621 0 0 1 621 826644944 826645564 0.000000e+00 1147.0
7 TraesCS3B01G608200 chr3B 83.706 626 70 17 1 621 826614409 826615007 5.140000e-156 562.0
8 TraesCS3B01G608200 chr3B 91.803 305 17 3 3665 3968 826455127 826455424 1.180000e-112 418.0
9 TraesCS3B01G608200 chr3B 91.803 305 17 3 3665 3968 826595538 826595835 1.180000e-112 418.0
10 TraesCS3B01G608200 chr3D 91.240 3596 178 59 4065 7584 612315197 612311663 0.000000e+00 4769.0
11 TraesCS3B01G608200 chr3D 92.126 3010 126 45 1001 3968 612318139 612315199 0.000000e+00 4143.0
12 TraesCS3B01G608200 chr3D 82.609 115 13 6 2129 2239 45494499 45494388 2.250000e-15 95.3
13 TraesCS3B01G608200 chr3D 89.474 57 6 0 1353 1409 21942279 21942223 1.060000e-08 73.1
14 TraesCS3B01G608200 chr3A 92.800 1639 74 15 1558 3184 747008274 747006668 0.000000e+00 2333.0
15 TraesCS3B01G608200 chr3A 93.542 1564 60 12 4065 5621 747005995 747004466 0.000000e+00 2290.0
16 TraesCS3B01G608200 chr3A 89.293 1569 102 35 5687 7216 747004223 747002682 0.000000e+00 1906.0
17 TraesCS3B01G608200 chr3A 90.065 614 27 10 3366 3968 747006587 747005997 0.000000e+00 765.0
18 TraesCS3B01G608200 chr3A 86.078 510 22 15 1001 1485 747008756 747008271 3.160000e-138 503.0
19 TraesCS3B01G608200 chr3A 85.019 267 31 4 7273 7539 747002581 747002324 5.840000e-66 263.0
20 TraesCS3B01G608200 chr3A 89.535 86 9 0 3225 3310 747006672 747006587 8.050000e-20 110.0
21 TraesCS3B01G608200 chr6A 83.706 2283 234 63 1738 3968 592434882 592437078 0.000000e+00 2028.0
22 TraesCS3B01G608200 chr6A 87.955 1320 120 22 4067 5370 592437082 592438378 0.000000e+00 1520.0
23 TraesCS3B01G608200 chr6A 87.473 471 44 10 5365 5828 592438625 592439087 5.210000e-146 529.0
24 TraesCS3B01G608200 chr6A 89.494 257 21 2 6342 6594 592440050 592440304 3.420000e-83 320.0
25 TraesCS3B01G608200 chr6A 88.095 252 18 3 5394 5645 101615285 101615524 9.630000e-74 289.0
26 TraesCS3B01G608200 chr6A 94.245 139 8 0 5733 5871 132972941 132973079 5.970000e-51 213.0
27 TraesCS3B01G608200 chr6A 78.862 369 36 23 6517 6853 592455567 592455925 2.150000e-50 211.0
28 TraesCS3B01G608200 chr6A 82.051 234 24 9 6050 6279 592439400 592439619 4.680000e-42 183.0
29 TraesCS3B01G608200 chr6B 86.780 1702 140 36 2291 3967 672363258 672364899 0.000000e+00 1818.0
30 TraesCS3B01G608200 chr6B 89.689 1319 115 17 4067 5370 672364904 672366216 0.000000e+00 1663.0
31 TraesCS3B01G608200 chr6B 77.884 1049 123 59 5896 6863 672367150 672368170 1.110000e-152 551.0
32 TraesCS3B01G608200 chr6B 87.152 467 49 6 5365 5828 672366442 672366900 3.140000e-143 520.0
33 TraesCS3B01G608200 chr6B 78.018 555 71 29 1700 2239 672362714 672363232 1.240000e-77 302.0
34 TraesCS3B01G608200 chr6B 80.312 320 39 12 6425 6724 672406856 672407171 3.560000e-53 220.0
35 TraesCS3B01G608200 chr6D 89.962 1305 111 16 4067 5355 445764590 445765890 0.000000e+00 1666.0
36 TraesCS3B01G608200 chr6D 83.020 1331 122 49 1738 3010 445762343 445763627 0.000000e+00 1110.0
37 TraesCS3B01G608200 chr6D 84.386 570 51 19 6050 6600 445767060 445767610 6.750000e-145 525.0
38 TraesCS3B01G608200 chr6D 83.756 591 54 18 3008 3593 445763708 445764261 8.730000e-144 521.0
39 TraesCS3B01G608200 chr6D 79.242 554 59 30 6379 6892 445775670 445776207 1.220000e-87 335.0
40 TraesCS3B01G608200 chr6D 89.147 258 20 2 5365 5621 445766138 445766388 1.590000e-81 315.0
41 TraesCS3B01G608200 chr6D 80.098 407 40 20 1009 1402 414472098 414471720 1.620000e-66 265.0
42 TraesCS3B01G608200 chr6D 81.949 277 29 13 1004 1271 448377366 448377630 1.660000e-51 215.0
43 TraesCS3B01G608200 chrUn 95.981 821 29 2 4062 4881 330628364 330629181 0.000000e+00 1330.0
44 TraesCS3B01G608200 chrUn 97.037 540 13 1 4342 4881 423366980 423367516 0.000000e+00 905.0
45 TraesCS3B01G608200 chrUn 91.803 305 17 3 3665 3968 330628068 330628365 1.180000e-112 418.0
46 TraesCS3B01G608200 chrUn 91.803 305 17 3 3665 3968 380431143 380431440 1.180000e-112 418.0
47 TraesCS3B01G608200 chrUn 92.053 302 16 3 3668 3968 459410941 459410647 1.180000e-112 418.0
48 TraesCS3B01G608200 chr7D 90.801 587 52 2 1716 2302 85357263 85357847 0.000000e+00 784.0
49 TraesCS3B01G608200 chr7D 81.588 277 30 13 1004 1271 481608176 481607912 7.720000e-50 209.0
50 TraesCS3B01G608200 chr7D 95.575 113 4 1 3956 4067 269373320 269373432 6.050000e-41 180.0
51 TraesCS3B01G608200 chr7A 86.431 339 25 9 5733 6051 72961758 72961421 1.210000e-92 351.0
52 TraesCS3B01G608200 chr5A 88.095 252 17 4 5394 5645 554435931 554435693 3.470000e-73 287.0
53 TraesCS3B01G608200 chr5A 87.698 252 18 4 5394 5645 554380534 554380296 1.610000e-71 281.0
54 TraesCS3B01G608200 chr5A 87.302 252 20 3 5394 5645 614712915 614713154 2.090000e-70 278.0
55 TraesCS3B01G608200 chr5A 94.964 139 7 0 5733 5871 554435684 554435546 1.280000e-52 219.0
56 TraesCS3B01G608200 chr5A 94.245 139 8 0 5733 5871 554380287 554380149 5.970000e-51 213.0
57 TraesCS3B01G608200 chr5A 94.175 103 6 0 5733 5835 20364763 20364661 2.830000e-34 158.0
58 TraesCS3B01G608200 chr4A 87.352 253 19 4 5394 5645 197480816 197480576 2.090000e-70 278.0
59 TraesCS3B01G608200 chr4A 94.175 103 6 0 5733 5835 197480567 197480465 2.830000e-34 158.0
60 TraesCS3B01G608200 chr1D 98.113 106 1 1 3966 4071 314718503 314718399 4.680000e-42 183.0
61 TraesCS3B01G608200 chr5B 98.077 104 2 0 3965 4068 455737503 455737606 1.680000e-41 182.0
62 TraesCS3B01G608200 chr5B 86.325 117 16 0 2309 2425 261255682 261255566 2.220000e-25 128.0
63 TraesCS3B01G608200 chr2A 97.196 107 1 1 3964 4068 92494525 92494419 6.050000e-41 180.0
64 TraesCS3B01G608200 chr2A 98.058 103 2 0 3966 4068 619208031 619208133 6.050000e-41 180.0
65 TraesCS3B01G608200 chr2A 82.857 105 11 6 2139 2239 758293424 758293323 3.770000e-13 87.9
66 TraesCS3B01G608200 chr7B 97.170 106 2 1 3967 4071 5263738 5263843 2.180000e-40 178.0
67 TraesCS3B01G608200 chr7B 82.609 115 13 6 2129 2239 164155071 164155182 2.250000e-15 95.3
68 TraesCS3B01G608200 chr5D 96.262 107 4 0 3958 4064 335127543 335127649 7.830000e-40 176.0
69 TraesCS3B01G608200 chr1B 95.455 110 3 2 3967 4076 536657407 536657514 2.810000e-39 174.0
70 TraesCS3B01G608200 chr1B 93.220 118 6 2 3947 4063 233786919 233786803 1.010000e-38 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G608200 chr3B 826644944 826652532 7588 False 6657.500000 12168 100.0000 1 7589 2 chr3B.!!$F5 7588
1 TraesCS3B01G608200 chr3B 826621173 826624693 3520 False 2761.000000 4159 95.5110 1233 4881 2 chr3B.!!$F4 3648
2 TraesCS3B01G608200 chr3B 826614409 826616247 1838 False 1104.000000 1646 87.8845 1 2177 2 chr3B.!!$F3 2176
3 TraesCS3B01G608200 chr3B 826595538 826596651 1113 False 879.500000 1341 94.0135 3665 4881 2 chr3B.!!$F2 1216
4 TraesCS3B01G608200 chr3B 826455127 826456240 1113 False 874.000000 1330 93.8920 3665 4881 2 chr3B.!!$F1 1216
5 TraesCS3B01G608200 chr3D 612311663 612318139 6476 True 4456.000000 4769 91.6830 1001 7584 2 chr3D.!!$R3 6583
6 TraesCS3B01G608200 chr3A 747002324 747008756 6432 True 1167.142857 2333 89.4760 1001 7539 7 chr3A.!!$R1 6538
7 TraesCS3B01G608200 chr6A 592434882 592440304 5422 False 916.000000 2028 86.1358 1738 6594 5 chr6A.!!$F4 4856
8 TraesCS3B01G608200 chr6B 672362714 672368170 5456 False 970.800000 1818 83.9046 1700 6863 5 chr6B.!!$F2 5163
9 TraesCS3B01G608200 chr6D 445762343 445767610 5267 False 827.400000 1666 86.0542 1738 6600 5 chr6D.!!$F3 4862
10 TraesCS3B01G608200 chr6D 445775670 445776207 537 False 335.000000 335 79.2420 6379 6892 1 chr6D.!!$F1 513
11 TraesCS3B01G608200 chrUn 423366980 423367516 536 False 905.000000 905 97.0370 4342 4881 1 chrUn.!!$F2 539
12 TraesCS3B01G608200 chrUn 330628068 330629181 1113 False 874.000000 1330 93.8920 3665 4881 2 chrUn.!!$F3 1216
13 TraesCS3B01G608200 chr7D 85357263 85357847 584 False 784.000000 784 90.8010 1716 2302 1 chr7D.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.105224 TTTCGTCGACTCAGGGCAAA 59.895 50.000 14.70 0.00 0.00 3.68 F
570 576 0.107703 TAATGAGCTCCCACCAAGCG 60.108 55.000 12.15 0.00 44.59 4.68 F
1712 1775 1.110442 AGTAGCTGCTACTGCTGGAG 58.890 55.000 34.61 0.00 44.47 3.86 F
2282 2387 0.457035 CATGGGCATTTCACCGGAAG 59.543 55.000 9.46 0.00 33.82 3.46 F
3979 4257 0.179054 GCCAAATACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79 F
3980 4258 0.468648 CCAAATACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46 F
3981 4259 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37 F
3982 4260 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12 F
4063 4341 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24 F
5694 6457 2.606108 GGACGAAATTTGTGGCCATTC 58.394 47.619 9.72 7.42 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1775 0.184211 ACACAAACACCTACACCCCC 59.816 55.000 0.00 0.00 0.00 5.40 R
2037 2112 1.723003 GCAATCAGCAAAAGCGGAAAG 59.277 47.619 0.00 0.00 44.79 2.62 R
3275 3522 1.355720 ACCCTTTGGCAAGCTACAGAT 59.644 47.619 0.00 0.00 33.59 2.90 R
4047 4325 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37 R
5682 6445 1.902938 TGTCATCGAATGGCCACAAA 58.097 45.000 8.16 0.00 32.84 2.83 R
5694 6457 2.993220 TCGAAGGTTGAACATGTCATCG 59.007 45.455 0.00 0.51 36.70 3.84 R
5815 6580 4.472286 TCGTTAAATAGCTTTGCTTGCAC 58.528 39.130 0.00 0.00 40.44 4.57 R
5917 6873 7.112452 AGTAGAACATCATACTGCACATGTA 57.888 36.000 0.00 0.00 31.09 2.29 R
6011 6983 0.756903 ATGCCTATGGGTACGTGTCC 59.243 55.000 0.00 0.00 34.45 4.02 R
6952 8384 1.761784 CCATGGTAGCAGCTCTTCTCT 59.238 52.381 2.57 0.00 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.226802 CCAGCGACGAGGTCAGATG 60.227 63.158 0.00 0.00 32.09 2.90
27 28 1.226802 CAGCGACGAGGTCAGATGG 60.227 63.158 0.00 0.00 32.09 3.51
29 30 0.753479 AGCGACGAGGTCAGATGGAT 60.753 55.000 0.00 0.00 32.09 3.41
31 32 1.337071 GCGACGAGGTCAGATGGATAA 59.663 52.381 0.00 0.00 32.09 1.75
32 33 2.605823 GCGACGAGGTCAGATGGATAAG 60.606 54.545 0.00 0.00 32.09 1.73
33 34 2.619177 CGACGAGGTCAGATGGATAAGT 59.381 50.000 0.00 0.00 32.09 2.24
36 37 4.759782 ACGAGGTCAGATGGATAAGTTTG 58.240 43.478 0.00 0.00 0.00 2.93
37 38 4.223032 ACGAGGTCAGATGGATAAGTTTGT 59.777 41.667 0.00 0.00 0.00 2.83
38 39 4.806247 CGAGGTCAGATGGATAAGTTTGTC 59.194 45.833 0.00 0.00 0.00 3.18
73 74 2.706723 TGGCTAACACAAGGGTAGTTGA 59.293 45.455 0.00 0.00 0.00 3.18
89 90 4.091453 AGTTGACTTGGTTGTGTTTTCG 57.909 40.909 0.00 0.00 0.00 3.46
97 98 1.928503 GGTTGTGTTTTCGTCGACTCA 59.071 47.619 14.70 0.00 0.00 3.41
104 105 0.105224 TTTCGTCGACTCAGGGCAAA 59.895 50.000 14.70 0.00 0.00 3.68
146 148 2.159366 GCTCGTCTTCTTCTTCGGATCA 60.159 50.000 0.00 0.00 0.00 2.92
166 168 5.459536 TCATGGATCCTTCTAGATCAACG 57.540 43.478 14.23 0.00 43.79 4.10
190 192 1.203087 TGGTCACTTCCCGGTAGAGAA 60.203 52.381 0.00 0.00 0.00 2.87
191 193 1.897802 GGTCACTTCCCGGTAGAGAAA 59.102 52.381 0.00 0.00 0.00 2.52
192 194 2.094130 GGTCACTTCCCGGTAGAGAAAG 60.094 54.545 0.00 0.00 0.00 2.62
193 195 2.094130 GTCACTTCCCGGTAGAGAAAGG 60.094 54.545 0.00 0.00 0.00 3.11
197 199 1.553706 TCCCGGTAGAGAAAGGTGAC 58.446 55.000 0.00 0.00 0.00 3.67
209 211 2.147387 AGGTGACTTCCCGGCTGTT 61.147 57.895 0.00 0.00 37.44 3.16
212 214 1.896660 TGACTTCCCGGCTGTTTGC 60.897 57.895 0.00 0.00 41.94 3.68
224 226 1.337167 GCTGTTTGCCTGGATTCAACC 60.337 52.381 0.00 0.00 35.15 3.77
227 229 3.037549 TGTTTGCCTGGATTCAACCTTT 58.962 40.909 0.00 0.00 0.00 3.11
232 234 3.069443 TGCCTGGATTCAACCTTTTTGTC 59.931 43.478 0.00 0.00 0.00 3.18
234 236 3.006859 CCTGGATTCAACCTTTTTGTCCC 59.993 47.826 0.00 0.00 0.00 4.46
235 237 2.625790 TGGATTCAACCTTTTTGTCCCG 59.374 45.455 0.00 0.00 0.00 5.14
236 238 2.888414 GGATTCAACCTTTTTGTCCCGA 59.112 45.455 0.00 0.00 0.00 5.14
242 244 1.203313 CTTTTTGTCCCGACGACGC 59.797 57.895 0.64 0.00 45.23 5.19
243 245 2.166584 CTTTTTGTCCCGACGACGCC 62.167 60.000 0.64 0.00 45.23 5.68
261 263 1.446099 CGGCGCAGAACTCTAGCAA 60.446 57.895 10.83 0.00 32.69 3.91
264 266 1.148310 GCGCAGAACTCTAGCAACAA 58.852 50.000 0.30 0.00 0.00 2.83
268 270 3.002246 CGCAGAACTCTAGCAACAACAAA 59.998 43.478 0.00 0.00 0.00 2.83
271 273 5.979517 GCAGAACTCTAGCAACAACAAATTT 59.020 36.000 0.00 0.00 0.00 1.82
277 279 5.277825 TCTAGCAACAACAAATTTGGTTCG 58.722 37.500 21.74 7.52 35.21 3.95
304 306 0.742281 CATGTGCGGAACAGAGAGGG 60.742 60.000 0.00 0.00 43.64 4.30
305 307 2.435059 GTGCGGAACAGAGAGGGC 60.435 66.667 0.00 0.00 0.00 5.19
308 310 3.068691 CGGAACAGAGAGGGCGGA 61.069 66.667 0.00 0.00 0.00 5.54
311 313 1.513622 GAACAGAGAGGGCGGAGAC 59.486 63.158 0.00 0.00 0.00 3.36
340 342 6.151144 CCGAGGAGTGGAATGTATTTCTTTTT 59.849 38.462 0.00 0.00 34.56 1.94
363 365 9.927668 TTTTCATTTTGGGATCTCTTGTAATTC 57.072 29.630 0.00 0.00 0.00 2.17
368 370 9.713684 ATTTTGGGATCTCTTGTAATTCCAATA 57.286 29.630 0.00 0.00 33.73 1.90
408 410 3.434940 AAAAAGACTTACGCCCCATCT 57.565 42.857 0.00 0.00 0.00 2.90
409 411 2.693267 AAAGACTTACGCCCCATCTC 57.307 50.000 0.00 0.00 0.00 2.75
411 413 1.067582 GACTTACGCCCCATCTCGG 59.932 63.158 0.00 0.00 0.00 4.63
412 414 2.280186 CTTACGCCCCATCTCGGC 60.280 66.667 0.00 0.00 43.38 5.54
417 419 3.508840 GCCCCATCTCGGCGTTTG 61.509 66.667 6.85 3.09 36.47 2.93
418 420 3.508840 CCCCATCTCGGCGTTTGC 61.509 66.667 6.85 0.00 41.71 3.68
419 421 2.745884 CCCATCTCGGCGTTTGCA 60.746 61.111 6.85 0.00 45.35 4.08
421 423 1.135315 CCATCTCGGCGTTTGCAAG 59.865 57.895 6.85 0.00 45.35 4.01
422 424 1.135315 CATCTCGGCGTTTGCAAGG 59.865 57.895 6.85 0.00 45.35 3.61
423 425 2.690778 ATCTCGGCGTTTGCAAGGC 61.691 57.895 6.85 14.22 45.35 4.35
424 426 3.659092 CTCGGCGTTTGCAAGGCA 61.659 61.111 21.36 5.88 45.35 4.75
427 429 4.662961 GGCGTTTGCAAGGCACCC 62.663 66.667 21.36 8.55 45.35 4.61
428 430 3.605664 GCGTTTGCAAGGCACCCT 61.606 61.111 16.80 0.00 38.71 4.34
429 431 3.128375 CGTTTGCAAGGCACCCTT 58.872 55.556 0.00 0.00 45.88 3.95
452 454 7.603404 CCTTGCATTTTCAGGTCAAATTTGATA 59.397 33.333 23.05 7.61 39.73 2.15
454 456 9.504708 TTGCATTTTCAGGTCAAATTTGATAAT 57.495 25.926 23.05 10.02 39.73 1.28
455 457 8.937884 TGCATTTTCAGGTCAAATTTGATAATG 58.062 29.630 23.05 19.73 40.29 1.90
456 458 9.153721 GCATTTTCAGGTCAAATTTGATAATGA 57.846 29.630 23.05 21.35 40.01 2.57
486 488 9.468532 GAATTTAAGCAACAAAAGATGAACTCT 57.531 29.630 0.00 0.00 34.96 3.24
488 490 9.899226 ATTTAAGCAACAAAAGATGAACTCTAC 57.101 29.630 0.00 0.00 32.41 2.59
489 491 8.677148 TTAAGCAACAAAAGATGAACTCTACT 57.323 30.769 0.00 0.00 32.41 2.57
490 492 6.793492 AGCAACAAAAGATGAACTCTACTC 57.207 37.500 0.00 0.00 32.41 2.59
491 493 6.529220 AGCAACAAAAGATGAACTCTACTCT 58.471 36.000 0.00 0.00 32.41 3.24
524 526 8.047310 GGAAACCAAATCTAACCAAGAGAGATA 58.953 37.037 0.00 0.00 37.74 1.98
554 560 6.311735 ACTCAACAATTACCAACCCAGTAAT 58.688 36.000 0.00 0.00 41.13 1.89
555 561 6.208599 ACTCAACAATTACCAACCCAGTAATG 59.791 38.462 0.00 0.00 39.69 1.90
570 576 0.107703 TAATGAGCTCCCACCAAGCG 60.108 55.000 12.15 0.00 44.59 4.68
589 595 1.226030 GGTCAAGTCAAACCGACCGG 61.226 60.000 6.94 6.94 46.69 5.28
1122 1143 2.203422 ATCGCCGAGGAGGAGGAG 60.203 66.667 0.00 0.00 45.00 3.69
1209 1233 2.726351 GGAGGAGTTCGAGGGGCTG 61.726 68.421 0.00 0.00 0.00 4.85
1228 1267 1.820481 GAGGAGGAGGACGAGGACG 60.820 68.421 0.00 0.00 45.75 4.79
1229 1268 2.254737 GAGGAGGAGGACGAGGACGA 62.255 65.000 0.00 0.00 42.66 4.20
1230 1269 1.378250 GGAGGAGGACGAGGACGAA 60.378 63.158 0.00 0.00 42.66 3.85
1494 1556 6.501781 GCCTCAATTCATTCCTCATTTAGTG 58.498 40.000 0.00 0.00 0.00 2.74
1677 1740 1.171308 CTGGGTGGCATTCAAGTGAG 58.829 55.000 0.00 0.00 0.00 3.51
1684 1747 1.666888 GGCATTCAAGTGAGGTTTGCG 60.667 52.381 0.00 0.00 0.00 4.85
1712 1775 1.110442 AGTAGCTGCTACTGCTGGAG 58.890 55.000 34.61 0.00 44.47 3.86
1739 1803 4.986659 GTGTAGGTGTTTGTGTCGTCTTAT 59.013 41.667 0.00 0.00 0.00 1.73
1854 1923 5.298347 GCAAGCCGATTTACTCTAGGTAAT 58.702 41.667 5.11 0.00 39.75 1.89
1894 1968 9.995003 GAGGAATTCATGATAGAGTTTATCAGT 57.005 33.333 7.93 0.00 37.37 3.41
2022 2097 3.796178 TGCAAGCGATTGTTTCTTTTGTC 59.204 39.130 15.72 0.00 0.00 3.18
2037 2112 2.380084 TTGTCGAGAACAGGTATGCC 57.620 50.000 0.00 0.00 39.58 4.40
2282 2387 0.457035 CATGGGCATTTCACCGGAAG 59.543 55.000 9.46 0.00 33.82 3.46
2514 2649 3.214328 ACAGTCTTGCGTTTCCATTCTT 58.786 40.909 0.00 0.00 0.00 2.52
2515 2650 3.003689 ACAGTCTTGCGTTTCCATTCTTG 59.996 43.478 0.00 0.00 0.00 3.02
2516 2651 2.030805 AGTCTTGCGTTTCCATTCTTGC 60.031 45.455 0.00 0.00 0.00 4.01
2517 2652 1.952990 TCTTGCGTTTCCATTCTTGCA 59.047 42.857 0.00 0.00 0.00 4.08
2518 2653 2.557924 TCTTGCGTTTCCATTCTTGCAT 59.442 40.909 0.00 0.00 31.70 3.96
2519 2654 3.005684 TCTTGCGTTTCCATTCTTGCATT 59.994 39.130 0.00 0.00 31.70 3.56
2520 2655 3.383620 TGCGTTTCCATTCTTGCATTT 57.616 38.095 0.00 0.00 0.00 2.32
2521 2656 3.316283 TGCGTTTCCATTCTTGCATTTC 58.684 40.909 0.00 0.00 0.00 2.17
2522 2657 2.667969 GCGTTTCCATTCTTGCATTTCC 59.332 45.455 0.00 0.00 0.00 3.13
2523 2658 3.860378 GCGTTTCCATTCTTGCATTTCCA 60.860 43.478 0.00 0.00 0.00 3.53
2524 2659 4.497300 CGTTTCCATTCTTGCATTTCCAT 58.503 39.130 0.00 0.00 0.00 3.41
2525 2660 4.931002 CGTTTCCATTCTTGCATTTCCATT 59.069 37.500 0.00 0.00 0.00 3.16
2526 2661 5.062558 CGTTTCCATTCTTGCATTTCCATTC 59.937 40.000 0.00 0.00 0.00 2.67
2527 2662 6.168389 GTTTCCATTCTTGCATTTCCATTCT 58.832 36.000 0.00 0.00 0.00 2.40
2568 2711 5.234757 TCTGAAAACACAAATTTGCAGATGC 59.765 36.000 18.12 0.00 45.50 3.91
2712 2855 5.268118 AGCTTGTTTCCTTTTCCTTTCTG 57.732 39.130 0.00 0.00 0.00 3.02
2741 2885 9.793259 GATCCCATCTTAATACATTTTGGACTA 57.207 33.333 0.00 0.00 0.00 2.59
3247 3493 6.377146 TGATCTTTTTGTAGAGTTAATGGCCC 59.623 38.462 0.00 0.00 0.00 5.80
3256 3502 2.937149 GAGTTAATGGCCCTTCTCGAAC 59.063 50.000 0.00 0.00 0.00 3.95
3263 3509 1.757699 GGCCCTTCTCGAACAGTCTAT 59.242 52.381 0.00 0.00 0.00 1.98
3270 3516 6.395629 CCTTCTCGAACAGTCTATGGTTTTA 58.604 40.000 0.00 0.00 0.00 1.52
3275 3522 6.693466 TCGAACAGTCTATGGTTTTATGTGA 58.307 36.000 0.00 0.00 0.00 3.58
3326 3579 6.963322 ACCATTTAGATTGCTCCTTCTAGTT 58.037 36.000 0.00 0.00 0.00 2.24
3725 3992 8.106462 TCAGTTATGTCTTTCACCATATCCAAA 58.894 33.333 0.00 0.00 0.00 3.28
3726 3993 8.400947 CAGTTATGTCTTTCACCATATCCAAAG 58.599 37.037 0.00 0.00 0.00 2.77
3803 4073 7.331026 TGGTATCAGATGTTTTCGATCTCTTT 58.669 34.615 0.00 0.00 0.00 2.52
3973 4251 1.780503 GCCATTGCCAAATACTCCCT 58.219 50.000 0.00 0.00 0.00 4.20
3974 4252 1.683385 GCCATTGCCAAATACTCCCTC 59.317 52.381 0.00 0.00 0.00 4.30
3975 4253 2.310538 CCATTGCCAAATACTCCCTCC 58.689 52.381 0.00 0.00 0.00 4.30
3976 4254 1.949525 CATTGCCAAATACTCCCTCCG 59.050 52.381 0.00 0.00 0.00 4.63
3977 4255 0.988832 TTGCCAAATACTCCCTCCGT 59.011 50.000 0.00 0.00 0.00 4.69
3978 4256 0.539986 TGCCAAATACTCCCTCCGTC 59.460 55.000 0.00 0.00 0.00 4.79
3979 4257 0.179054 GCCAAATACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
3980 4258 0.468648 CCAAATACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
3981 4259 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
3982 4260 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
3983 4261 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3984 4262 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3985 4263 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3986 4264 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3987 4265 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3988 4266 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3989 4267 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3990 4268 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
3991 4269 4.042174 TCCCTCCGTCCCAAAATAAGTAT 58.958 43.478 0.00 0.00 0.00 2.12
3992 4270 4.102054 TCCCTCCGTCCCAAAATAAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
3993 4271 4.102681 CCCTCCGTCCCAAAATAAGTATCT 59.897 45.833 0.00 0.00 0.00 1.98
3994 4272 5.397559 CCCTCCGTCCCAAAATAAGTATCTT 60.398 44.000 0.00 0.00 0.00 2.40
3995 4273 5.527582 CCTCCGTCCCAAAATAAGTATCTTG 59.472 44.000 0.00 0.00 0.00 3.02
3996 4274 6.302535 TCCGTCCCAAAATAAGTATCTTGA 57.697 37.500 0.00 0.00 0.00 3.02
3997 4275 6.346096 TCCGTCCCAAAATAAGTATCTTGAG 58.654 40.000 0.00 0.00 0.00 3.02
3998 4276 5.007724 CCGTCCCAAAATAAGTATCTTGAGC 59.992 44.000 0.00 0.00 0.00 4.26
3999 4277 5.817816 CGTCCCAAAATAAGTATCTTGAGCT 59.182 40.000 0.00 0.00 0.00 4.09
4000 4278 6.316390 CGTCCCAAAATAAGTATCTTGAGCTT 59.684 38.462 0.00 0.00 0.00 3.74
4001 4279 7.494625 CGTCCCAAAATAAGTATCTTGAGCTTA 59.505 37.037 0.00 0.00 0.00 3.09
4002 4280 8.831550 GTCCCAAAATAAGTATCTTGAGCTTAG 58.168 37.037 0.00 0.00 0.00 2.18
4003 4281 8.548877 TCCCAAAATAAGTATCTTGAGCTTAGT 58.451 33.333 0.00 0.00 0.00 2.24
4004 4282 9.832445 CCCAAAATAAGTATCTTGAGCTTAGTA 57.168 33.333 0.00 0.00 0.00 1.82
4013 4291 9.726438 AGTATCTTGAGCTTAGTACAAATTTGT 57.274 29.630 25.99 25.99 44.86 2.83
4038 4316 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
4039 4317 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
4040 4318 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
4041 4319 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
4042 4320 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
4043 4321 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
4044 4322 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
4045 4323 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
4046 4324 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
4049 4327 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4050 4328 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
4051 4329 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
4052 4330 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4053 4331 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4054 4332 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4055 4333 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4056 4334 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4057 4335 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4058 4336 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4059 4337 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4060 4338 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4061 4339 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4062 4340 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4063 4341 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
4277 4557 6.366332 CCTCCGAATCTTTTAGGTAATCATCG 59.634 42.308 0.00 0.00 0.00 3.84
4294 4575 3.749609 TCATCGCATGCTATCTGAAATGG 59.250 43.478 17.13 0.00 0.00 3.16
4328 4609 7.611467 TGACCTACAAGCATCTCACAATATTTT 59.389 33.333 0.00 0.00 0.00 1.82
4470 4751 8.785329 TGAATATGCATGTTCACTTAAGTGTA 57.215 30.769 28.66 20.90 45.76 2.90
4530 4811 2.851263 ACGGCACAGATGGAAACTTA 57.149 45.000 0.00 0.00 0.00 2.24
4771 5060 6.656270 TGAATGCTGCCTAATATGTATTGGAG 59.344 38.462 0.00 0.00 0.00 3.86
4836 5126 7.144000 GCATTCAGGATGTTCTATTGAAATCC 58.856 38.462 16.02 16.02 38.57 3.01
5025 5315 8.817100 GGACTTTGGCATTTTATATACAAAAGC 58.183 33.333 0.00 0.00 31.29 3.51
5169 5468 7.067496 ACTGTCTTTGAGAGAAAACCTGATA 57.933 36.000 0.00 0.00 35.79 2.15
5340 5648 9.528018 TTTTTGATTGGATTGTTTCTGTTAGTC 57.472 29.630 0.00 0.00 0.00 2.59
5341 5649 8.463930 TTTGATTGGATTGTTTCTGTTAGTCT 57.536 30.769 0.00 0.00 0.00 3.24
5366 5928 9.857957 CTATTCCCCGAGTTATAGTTCTTATTC 57.142 37.037 0.00 0.00 0.00 1.75
5401 5964 9.360093 GTAGGTAGCAACTATAGAAATATGCAG 57.640 37.037 6.78 0.00 36.30 4.41
5429 5992 6.538444 GTTCTTAGTGTATTTTGCTGCTCTC 58.462 40.000 0.00 0.00 0.00 3.20
5434 5997 5.121811 AGTGTATTTTGCTGCTCTCATAGG 58.878 41.667 0.00 0.00 0.00 2.57
5481 6048 7.046652 CCATTGGGATCTAGATATCATCACAC 58.953 42.308 4.89 0.00 35.59 3.82
5499 6066 4.520111 TCACACCAAATCATTTGTCTGGAG 59.480 41.667 9.31 0.00 38.98 3.86
5694 6457 2.606108 GGACGAAATTTGTGGCCATTC 58.394 47.619 9.72 7.42 0.00 2.67
5724 6487 3.056536 TGTTCAACCTTCGAGAGAGATGG 60.057 47.826 0.00 0.00 43.69 3.51
5731 6494 4.825085 ACCTTCGAGAGAGATGGAACTATC 59.175 45.833 6.01 0.00 43.69 2.08
5738 6503 6.478512 AGAGAGATGGAACTATCACCTTTC 57.521 41.667 0.00 0.00 31.52 2.62
5815 6580 2.782163 CAATTGTGCGATCTCAGCTTG 58.218 47.619 0.00 0.00 35.28 4.01
5885 6815 6.540189 GGCATATAGTATGCAGGGAACTAATG 59.460 42.308 19.92 6.03 46.21 1.90
5888 6818 4.423625 AGTATGCAGGGAACTAATGTCC 57.576 45.455 0.00 0.00 40.21 4.02
5897 6835 6.284459 CAGGGAACTAATGTCCTGTATCTTC 58.716 44.000 0.00 0.00 41.21 2.87
5932 6888 7.606073 ACAAATACAGTTACATGTGCAGTATGA 59.394 33.333 9.11 0.18 34.17 2.15
5940 6896 7.492669 AGTTACATGTGCAGTATGATGTTCTAC 59.507 37.037 9.11 6.24 39.69 2.59
5946 6902 7.382898 TGTGCAGTATGATGTTCTACTTTACA 58.617 34.615 0.00 0.00 39.69 2.41
6008 6980 5.454966 TCAGTAGTACCATCCATTCTGCTA 58.545 41.667 0.00 0.00 0.00 3.49
6011 6983 6.648310 CAGTAGTACCATCCATTCTGCTAATG 59.352 42.308 0.00 5.63 0.00 1.90
6026 6998 3.069016 TGCTAATGGACACGTACCCATAG 59.931 47.826 17.86 15.49 41.98 2.23
6028 7000 0.756903 ATGGACACGTACCCATAGGC 59.243 55.000 16.52 0.00 41.09 3.93
6030 7002 0.756903 GGACACGTACCCATAGGCAT 59.243 55.000 0.00 0.00 36.11 4.40
6031 7003 1.965643 GGACACGTACCCATAGGCATA 59.034 52.381 0.00 0.00 36.11 3.14
6032 7004 2.565834 GGACACGTACCCATAGGCATAT 59.434 50.000 0.00 0.00 36.11 1.78
6034 7006 4.221262 GGACACGTACCCATAGGCATATAA 59.779 45.833 0.00 0.00 36.11 0.98
6036 7008 5.544650 ACACGTACCCATAGGCATATAAAC 58.455 41.667 0.00 0.00 36.11 2.01
6037 7009 5.306160 ACACGTACCCATAGGCATATAAACT 59.694 40.000 0.00 0.00 36.11 2.66
6039 7011 4.630069 CGTACCCATAGGCATATAAACTGC 59.370 45.833 0.00 0.00 38.93 4.40
6100 7100 5.304614 GCATTGATGTCCTAGGAGTACCTTA 59.695 44.000 13.15 0.00 45.36 2.69
6101 7101 6.517529 GCATTGATGTCCTAGGAGTACCTTAG 60.518 46.154 13.15 0.43 45.36 2.18
6103 7103 5.692928 TGATGTCCTAGGAGTACCTTAGTC 58.307 45.833 13.15 0.00 45.36 2.59
6104 7104 4.148128 TGTCCTAGGAGTACCTTAGTCG 57.852 50.000 13.15 0.00 45.36 4.18
6105 7105 3.521126 TGTCCTAGGAGTACCTTAGTCGT 59.479 47.826 13.15 0.00 45.36 4.34
6106 7106 3.876320 GTCCTAGGAGTACCTTAGTCGTG 59.124 52.174 13.15 0.00 45.36 4.35
6107 7107 3.776969 TCCTAGGAGTACCTTAGTCGTGA 59.223 47.826 7.62 0.00 45.36 4.35
6108 7108 4.225942 TCCTAGGAGTACCTTAGTCGTGAA 59.774 45.833 7.62 0.00 45.36 3.18
6110 7110 5.593502 CCTAGGAGTACCTTAGTCGTGAATT 59.406 44.000 1.05 0.00 45.36 2.17
6111 7111 5.997384 AGGAGTACCTTAGTCGTGAATTT 57.003 39.130 0.00 0.00 45.36 1.82
6112 7112 6.356186 AGGAGTACCTTAGTCGTGAATTTT 57.644 37.500 0.00 0.00 45.36 1.82
6113 7113 6.396450 AGGAGTACCTTAGTCGTGAATTTTC 58.604 40.000 0.00 0.00 45.36 2.29
6114 7114 6.210984 AGGAGTACCTTAGTCGTGAATTTTCT 59.789 38.462 0.00 0.00 45.36 2.52
6115 7115 6.872547 GGAGTACCTTAGTCGTGAATTTTCTT 59.127 38.462 0.00 0.00 0.00 2.52
6154 7154 8.213518 TGAAGTGTGATGCTATTTCCTATTTC 57.786 34.615 0.00 0.00 0.00 2.17
6167 7167 2.104111 TCCTATTTCCCTATGTGTGCCG 59.896 50.000 0.00 0.00 0.00 5.69
6256 7260 0.108186 TGTATGCAGCCTTCAGTCCG 60.108 55.000 0.00 0.00 0.00 4.79
6310 7680 6.058183 ACAGTTCAGCAATACTATCAATCCC 58.942 40.000 0.00 0.00 0.00 3.85
6608 8012 8.590204 TGTATGAGGTTTGTCTCTGTAACATTA 58.410 33.333 0.00 0.00 34.98 1.90
6609 8013 9.601217 GTATGAGGTTTGTCTCTGTAACATTAT 57.399 33.333 0.00 0.00 34.98 1.28
6654 8059 5.237048 TCATGATGATCGTTGTTCAAGACA 58.763 37.500 0.00 0.00 36.19 3.41
6754 8173 2.422746 ACCTCCTAATTCCCCATGGAG 58.577 52.381 15.22 0.00 43.07 3.86
6948 8380 8.963725 TCCTAGTATCGTTGATGAGTAGAAAAA 58.036 33.333 0.00 0.00 0.00 1.94
6977 8409 4.127744 GCTGCTACCATGGCCCCA 62.128 66.667 13.04 5.11 0.00 4.96
6978 8410 2.194056 CTGCTACCATGGCCCCAG 59.806 66.667 13.04 11.50 0.00 4.45
7038 8471 4.864334 CTGGGGATCGGCTGCACC 62.864 72.222 0.50 0.00 0.00 5.01
7206 8639 0.179171 CGTCGTCGATAGCAACTGGT 60.179 55.000 0.00 0.00 39.71 4.00
7216 8649 2.281070 CAACTGGTGCGCTCCTGT 60.281 61.111 28.56 28.56 40.47 4.00
7217 8650 2.031163 AACTGGTGCGCTCCTGTC 59.969 61.111 32.21 8.69 38.40 3.51
7218 8651 3.537206 AACTGGTGCGCTCCTGTCC 62.537 63.158 32.21 15.51 38.40 4.02
7283 8784 2.682494 CGGGGAGAAGGTCGGGAA 60.682 66.667 0.00 0.00 0.00 3.97
7308 8809 2.814341 CCTGAGTCGCTGCTGCTG 60.814 66.667 14.03 0.77 36.97 4.41
7454 8964 4.021925 GCGCACCTCCTCCTTGGT 62.022 66.667 0.30 0.00 36.96 3.67
7467 8977 2.604686 TTGGTCGCCTCCAGCTCT 60.605 61.111 0.00 0.00 40.39 4.09
7470 8980 3.768922 GTCGCCTCCAGCTCTGCT 61.769 66.667 0.00 0.00 40.77 4.24
7513 9023 2.430610 GCCTCCTCCACGATCTGCT 61.431 63.158 0.00 0.00 0.00 4.24
7514 9024 1.440893 CCTCCTCCACGATCTGCTG 59.559 63.158 0.00 0.00 0.00 4.41
7515 9025 1.227205 CTCCTCCACGATCTGCTGC 60.227 63.158 0.00 0.00 0.00 5.25
7519 9029 1.773054 CTCCACGATCTGCTGCATGC 61.773 60.000 11.82 11.82 43.25 4.06
7558 9068 4.639906 TCTGCATGCCACGCCACA 62.640 61.111 16.68 0.00 0.00 4.17
7575 9087 2.159517 CCACAGCGACAAAGATTAAGCC 60.160 50.000 0.00 0.00 0.00 4.35
7584 9096 4.151883 ACAAAGATTAAGCCAAAGGAGCA 58.848 39.130 0.00 0.00 0.00 4.26
7585 9097 4.219288 ACAAAGATTAAGCCAAAGGAGCAG 59.781 41.667 0.00 0.00 0.00 4.24
7586 9098 2.373224 AGATTAAGCCAAAGGAGCAGC 58.627 47.619 0.00 0.00 0.00 5.25
7587 9099 2.094675 GATTAAGCCAAAGGAGCAGCA 58.905 47.619 0.00 0.00 0.00 4.41
7588 9100 1.993956 TTAAGCCAAAGGAGCAGCAA 58.006 45.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.619177 ACTTATCCATCTGACCTCGTCG 59.381 50.000 0.00 0.00 34.95 5.12
16 17 4.806247 CGACAAACTTATCCATCTGACCTC 59.194 45.833 0.00 0.00 0.00 3.85
26 27 6.496338 AATGGAAAGACGACAAACTTATCC 57.504 37.500 0.00 0.00 0.00 2.59
27 28 7.323656 CACAAATGGAAAGACGACAAACTTATC 59.676 37.037 0.00 0.00 0.00 1.75
29 30 6.491394 CACAAATGGAAAGACGACAAACTTA 58.509 36.000 0.00 0.00 0.00 2.24
31 32 4.920376 CACAAATGGAAAGACGACAAACT 58.080 39.130 0.00 0.00 0.00 2.66
73 74 2.094734 GTCGACGAAAACACAACCAAGT 59.905 45.455 0.00 0.00 0.00 3.16
89 90 2.668280 GCGTTTGCCCTGAGTCGAC 61.668 63.158 7.70 7.70 33.98 4.20
104 105 1.683917 GAGATGATCACACCTAGGCGT 59.316 52.381 9.30 1.49 0.00 5.68
146 148 4.022762 CGACGTTGATCTAGAAGGATCCAT 60.023 45.833 15.82 0.17 40.80 3.41
157 159 2.156917 AGTGACCACGACGTTGATCTA 58.843 47.619 10.51 0.00 36.20 1.98
166 168 1.526575 TACCGGGAAGTGACCACGAC 61.527 60.000 6.32 0.00 36.20 4.34
190 192 1.705997 AACAGCCGGGAAGTCACCTT 61.706 55.000 2.18 0.00 0.00 3.50
191 193 1.705997 AAACAGCCGGGAAGTCACCT 61.706 55.000 2.18 0.00 0.00 4.00
192 194 1.228154 AAACAGCCGGGAAGTCACC 60.228 57.895 2.18 0.00 0.00 4.02
193 195 1.949257 CAAACAGCCGGGAAGTCAC 59.051 57.895 2.18 0.00 0.00 3.67
209 211 3.454082 ACAAAAAGGTTGAATCCAGGCAA 59.546 39.130 0.00 0.00 0.00 4.52
212 214 3.006859 GGGACAAAAAGGTTGAATCCAGG 59.993 47.826 0.00 0.00 0.00 4.45
224 226 1.203313 GCGTCGTCGGGACAAAAAG 59.797 57.895 3.90 0.00 46.42 2.27
242 244 2.583593 GCTAGAGTTCTGCGCCGG 60.584 66.667 4.18 0.00 0.00 6.13
243 245 1.446099 TTGCTAGAGTTCTGCGCCG 60.446 57.895 4.18 0.00 0.00 6.46
250 252 6.273071 ACCAAATTTGTTGTTGCTAGAGTTC 58.727 36.000 16.73 0.00 0.00 3.01
261 263 2.969628 TGGCGAACCAAATTTGTTGT 57.030 40.000 16.73 5.90 45.37 3.32
288 290 2.435059 GCCCTCTCTGTTCCGCAC 60.435 66.667 0.00 0.00 0.00 5.34
295 297 1.379309 GAGTCTCCGCCCTCTCTGT 60.379 63.158 0.00 0.00 0.00 3.41
304 306 4.816984 TCCTCGGGGAGTCTCCGC 62.817 72.222 27.31 23.04 46.43 5.54
311 313 7.703945 GAAATACATTCCACTCCTCGGGGAG 62.704 52.000 30.34 30.34 46.31 4.30
340 342 7.181361 TGGAATTACAAGAGATCCCAAAATGA 58.819 34.615 0.00 0.00 0.00 2.57
347 349 7.449704 AGCATTATTGGAATTACAAGAGATCCC 59.550 37.037 9.41 0.00 33.23 3.85
348 350 8.401490 AGCATTATTGGAATTACAAGAGATCC 57.599 34.615 9.41 0.00 33.23 3.36
393 395 1.067582 CCGAGATGGGGCGTAAGTC 59.932 63.158 0.00 0.00 45.19 3.01
395 397 2.280186 GCCGAGATGGGGCGTAAG 60.280 66.667 0.00 0.00 41.39 2.34
402 404 2.257286 CTTGCAAACGCCGAGATGGG 62.257 60.000 0.00 0.00 38.63 4.00
403 405 1.135315 CTTGCAAACGCCGAGATGG 59.865 57.895 0.00 0.00 42.50 3.51
405 407 2.690778 GCCTTGCAAACGCCGAGAT 61.691 57.895 0.00 0.00 0.00 2.75
407 409 3.659092 TGCCTTGCAAACGCCGAG 61.659 61.111 13.92 0.00 34.76 4.63
408 410 3.959975 GTGCCTTGCAAACGCCGA 61.960 61.111 13.92 0.00 41.47 5.54
409 411 4.999939 GGTGCCTTGCAAACGCCG 63.000 66.667 14.07 0.00 41.47 6.46
411 413 3.150647 AAGGGTGCCTTGCAAACGC 62.151 57.895 10.51 10.51 42.96 4.84
412 414 3.128375 AAGGGTGCCTTGCAAACG 58.872 55.556 0.00 0.00 42.96 3.60
423 425 1.962807 TGACCTGAAAATGCAAGGGTG 59.037 47.619 6.35 0.00 0.00 4.61
424 426 2.380064 TGACCTGAAAATGCAAGGGT 57.620 45.000 6.35 1.49 0.00 4.34
427 429 6.847956 TCAAATTTGACCTGAAAATGCAAG 57.152 33.333 16.91 0.00 31.01 4.01
428 430 8.899427 TTATCAAATTTGACCTGAAAATGCAA 57.101 26.923 22.71 0.00 40.49 4.08
429 431 8.937884 CATTATCAAATTTGACCTGAAAATGCA 58.062 29.630 22.71 0.00 40.49 3.96
430 432 9.153721 TCATTATCAAATTTGACCTGAAAATGC 57.846 29.630 22.71 0.00 40.49 3.56
458 460 9.598517 AGTTCATCTTTTGTTGCTTAAATTCAA 57.401 25.926 0.00 0.00 0.00 2.69
487 489 8.793592 GTTAGATTTGGTTTCCAATTGTAGAGT 58.206 33.333 4.43 0.00 43.55 3.24
488 490 8.244113 GGTTAGATTTGGTTTCCAATTGTAGAG 58.756 37.037 4.43 0.00 43.55 2.43
489 491 7.726291 TGGTTAGATTTGGTTTCCAATTGTAGA 59.274 33.333 4.43 0.00 43.55 2.59
490 492 7.891561 TGGTTAGATTTGGTTTCCAATTGTAG 58.108 34.615 4.43 0.00 43.55 2.74
491 493 7.841282 TGGTTAGATTTGGTTTCCAATTGTA 57.159 32.000 4.43 0.20 43.55 2.41
512 514 6.438741 TGTTGAGTTCATCTATCTCTCTTGGT 59.561 38.462 0.00 0.00 0.00 3.67
513 515 6.871844 TGTTGAGTTCATCTATCTCTCTTGG 58.128 40.000 0.00 0.00 0.00 3.61
524 526 5.476945 GGGTTGGTAATTGTTGAGTTCATCT 59.523 40.000 0.00 0.00 0.00 2.90
554 560 4.020617 CCGCTTGGTGGGAGCTCA 62.021 66.667 17.19 0.00 37.99 4.26
555 561 4.021925 ACCGCTTGGTGGGAGCTC 62.022 66.667 4.71 4.71 46.92 4.09
1122 1143 2.117779 GTACCCCTCGTCGTCCTCC 61.118 68.421 0.00 0.00 0.00 4.30
1185 1209 1.040339 CCTCGAACTCCTCCCTCTGG 61.040 65.000 0.00 0.00 0.00 3.86
1187 1211 1.308326 CCCTCGAACTCCTCCCTCT 59.692 63.158 0.00 0.00 0.00 3.69
1209 1233 1.454295 GTCCTCGTCCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
1427 1489 4.245660 TGGTTGAAATAGCTCAAGAGACG 58.754 43.478 0.32 0.00 36.01 4.18
1465 1527 3.129871 GAGGAATGAATTGAGGCGAGAG 58.870 50.000 0.00 0.00 0.00 3.20
1494 1556 0.307760 CGCTCGGCATCCAAATTACC 59.692 55.000 0.00 0.00 0.00 2.85
1515 1577 8.600449 GCTGAAGCTACTTGATAATAATGTCT 57.400 34.615 0.00 0.00 38.21 3.41
1553 1615 4.906065 TTATGAGTGAGCATGGATTTGC 57.094 40.909 0.00 0.00 43.09 3.68
1712 1775 0.184211 ACACAAACACCTACACCCCC 59.816 55.000 0.00 0.00 0.00 5.40
1854 1923 8.992349 TCATGAATTCCTCTTTCCTAAGTGATA 58.008 33.333 2.27 0.00 32.98 2.15
1894 1968 3.503363 CACCTGAGAAAGTGCAGCAATTA 59.497 43.478 8.83 0.00 0.00 1.40
1934 2008 2.821991 AGTTGAACCAGACGAAGGAG 57.178 50.000 0.00 0.00 0.00 3.69
2037 2112 1.723003 GCAATCAGCAAAAGCGGAAAG 59.277 47.619 0.00 0.00 44.79 2.62
2514 2649 6.474140 AATCAGCATAAGAATGGAAATGCA 57.526 33.333 8.65 0.00 45.62 3.96
2515 2650 7.208080 AGAAATCAGCATAAGAATGGAAATGC 58.792 34.615 0.00 0.00 43.97 3.56
2516 2651 8.630917 AGAGAAATCAGCATAAGAATGGAAATG 58.369 33.333 0.00 0.00 33.38 2.32
2517 2652 8.630917 CAGAGAAATCAGCATAAGAATGGAAAT 58.369 33.333 0.00 0.00 33.38 2.17
2518 2653 7.613022 ACAGAGAAATCAGCATAAGAATGGAAA 59.387 33.333 0.00 0.00 33.38 3.13
2519 2654 7.114754 ACAGAGAAATCAGCATAAGAATGGAA 58.885 34.615 0.00 0.00 33.38 3.53
2520 2655 6.656902 ACAGAGAAATCAGCATAAGAATGGA 58.343 36.000 0.00 0.00 33.38 3.41
2521 2656 6.766944 AGACAGAGAAATCAGCATAAGAATGG 59.233 38.462 0.00 0.00 33.38 3.16
2522 2657 7.494952 TCAGACAGAGAAATCAGCATAAGAATG 59.505 37.037 0.00 0.00 36.09 2.67
2523 2658 7.563020 TCAGACAGAGAAATCAGCATAAGAAT 58.437 34.615 0.00 0.00 0.00 2.40
2524 2659 6.939622 TCAGACAGAGAAATCAGCATAAGAA 58.060 36.000 0.00 0.00 0.00 2.52
2525 2660 6.535963 TCAGACAGAGAAATCAGCATAAGA 57.464 37.500 0.00 0.00 0.00 2.10
2526 2661 7.606858 TTTCAGACAGAGAAATCAGCATAAG 57.393 36.000 0.00 0.00 30.56 1.73
2527 2662 7.445096 TGTTTTCAGACAGAGAAATCAGCATAA 59.555 33.333 0.00 0.00 35.17 1.90
2568 2711 5.108385 ACCGACTTTGTCAAAATAAGCAG 57.892 39.130 0.00 0.00 32.09 4.24
2712 2855 6.381801 CAAAATGTATTAAGATGGGATCCGC 58.618 40.000 5.45 0.00 0.00 5.54
2983 3129 8.353423 ACATCTTACCAAATAAGCATGACTTT 57.647 30.769 0.00 0.00 40.29 2.66
3051 3280 5.070446 TGAAGCTCTAGAAAGTTCAAGTGGA 59.930 40.000 8.08 0.00 0.00 4.02
3247 3493 7.545965 ACATAAAACCATAGACTGTTCGAGAAG 59.454 37.037 0.00 0.00 0.00 2.85
3256 3502 9.254133 CTACAGATCACATAAAACCATAGACTG 57.746 37.037 0.00 0.00 0.00 3.51
3263 3509 5.123820 GCAAGCTACAGATCACATAAAACCA 59.876 40.000 0.00 0.00 0.00 3.67
3270 3516 3.354948 TTGGCAAGCTACAGATCACAT 57.645 42.857 0.00 0.00 0.00 3.21
3275 3522 1.355720 ACCCTTTGGCAAGCTACAGAT 59.644 47.619 0.00 0.00 33.59 2.90
3326 3579 7.552687 CAGAAGCCCACAATAACAAATAGTAGA 59.447 37.037 0.00 0.00 0.00 2.59
3725 3992 5.363562 TCTCAGAAATGTGGCATATCACT 57.636 39.130 0.00 0.00 38.40 3.41
3726 3993 6.630444 ATTCTCAGAAATGTGGCATATCAC 57.370 37.500 0.00 0.00 38.09 3.06
3765 4034 8.408043 ACATCTGATACCAAAGAACAAAATGA 57.592 30.769 0.00 0.00 0.00 2.57
3803 4073 7.448777 AGAACACAGAAGTCATTGAGTCTACTA 59.551 37.037 0.00 0.00 0.00 1.82
3968 4246 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3969 4247 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
3970 4248 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
3971 4249 5.291905 AGATACTTATTTTGGGACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
3972 4250 6.346096 TCAAGATACTTATTTTGGGACGGAG 58.654 40.000 0.00 0.00 31.05 4.63
3973 4251 6.302535 TCAAGATACTTATTTTGGGACGGA 57.697 37.500 0.00 0.00 31.05 4.69
3974 4252 5.007724 GCTCAAGATACTTATTTTGGGACGG 59.992 44.000 4.03 0.00 31.82 4.79
3975 4253 5.817816 AGCTCAAGATACTTATTTTGGGACG 59.182 40.000 4.03 0.00 31.82 4.79
3976 4254 7.631717 AAGCTCAAGATACTTATTTTGGGAC 57.368 36.000 4.03 0.00 31.82 4.46
3977 4255 8.548877 ACTAAGCTCAAGATACTTATTTTGGGA 58.451 33.333 4.03 0.00 31.82 4.37
3978 4256 8.738645 ACTAAGCTCAAGATACTTATTTTGGG 57.261 34.615 3.19 0.00 32.95 4.12
3987 4265 9.726438 ACAAATTTGTACTAAGCTCAAGATACT 57.274 29.630 22.10 0.00 40.16 2.12
4013 4291 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
4015 4293 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
4016 4294 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
4017 4295 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
4018 4296 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
4019 4297 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
4020 4298 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
4023 4301 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4024 4302 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4025 4303 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4026 4304 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4027 4305 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
4028 4306 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4029 4307 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4030 4308 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4031 4309 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4032 4310 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4033 4311 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4034 4312 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4035 4313 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4036 4314 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4037 4315 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4038 4316 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4039 4317 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4040 4318 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4041 4319 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4042 4320 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4043 4321 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4044 4322 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
4045 4323 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4046 4324 2.292389 TGTATTACTCCCTCCGTCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
4047 4325 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
4048 4326 1.685517 GTGTATTACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
4049 4327 2.664015 AGTGTATTACTCCCTCCGTCC 58.336 52.381 0.00 0.00 33.17 4.79
4050 4328 5.533903 TCATAAGTGTATTACTCCCTCCGTC 59.466 44.000 0.00 0.00 39.18 4.79
4051 4329 5.452255 TCATAAGTGTATTACTCCCTCCGT 58.548 41.667 0.00 0.00 39.18 4.69
4052 4330 6.591750 ATCATAAGTGTATTACTCCCTCCG 57.408 41.667 0.00 0.00 39.18 4.63
4053 4331 6.651225 GCAATCATAAGTGTATTACTCCCTCC 59.349 42.308 0.00 0.00 39.18 4.30
4054 4332 7.217200 TGCAATCATAAGTGTATTACTCCCTC 58.783 38.462 0.00 0.00 39.18 4.30
4055 4333 7.136822 TGCAATCATAAGTGTATTACTCCCT 57.863 36.000 0.00 0.00 39.18 4.20
4056 4334 7.499232 AGTTGCAATCATAAGTGTATTACTCCC 59.501 37.037 0.59 0.00 39.18 4.30
4057 4335 8.438676 AGTTGCAATCATAAGTGTATTACTCC 57.561 34.615 0.59 0.00 39.18 3.85
4124 4404 2.949451 ACATGAACGCAGAGGACTAG 57.051 50.000 0.00 0.00 0.00 2.57
4187 4467 1.733402 TTGCCTTTTGTGCTCCCACG 61.733 55.000 0.00 0.00 45.04 4.94
4277 4557 5.045872 GGTTTTCCATTTCAGATAGCATGC 58.954 41.667 10.51 10.51 40.31 4.06
4318 4599 7.593273 TCCTGCGTTAAACAGAAAAATATTGTG 59.407 33.333 8.06 0.00 37.32 3.33
4328 4609 2.798283 CGAAGTCCTGCGTTAAACAGAA 59.202 45.455 8.06 0.00 37.32 3.02
4470 4751 4.532126 TCTCATAATGAGGATATTGCCGGT 59.468 41.667 1.90 0.00 44.39 5.28
4530 4811 9.836864 TGATCAACACTGCATATAAACTTCTAT 57.163 29.630 0.00 0.00 0.00 1.98
4771 5060 5.583969 GACAAAAGAGTAGTTGTCTCAGC 57.416 43.478 8.83 0.00 46.57 4.26
4836 5126 3.319137 TGGACTTCGAGAAGGACATTG 57.681 47.619 16.16 0.00 42.53 2.82
5025 5315 6.128876 ACGATACGTACTGATCAAGATAGACG 60.129 42.308 0.00 3.34 38.73 4.18
5117 5407 8.190122 CACTAATGCAGAAGTAAATAATGCCAA 58.810 33.333 3.59 0.00 36.04 4.52
5119 5409 7.930217 TCACTAATGCAGAAGTAAATAATGCC 58.070 34.615 3.59 0.00 36.04 4.40
5120 5410 9.226345 GTTCACTAATGCAGAAGTAAATAATGC 57.774 33.333 3.59 0.00 37.40 3.56
5136 5434 7.953158 TTCTCTCAAAGACAGTTCACTAATG 57.047 36.000 0.00 0.00 32.27 1.90
5169 5468 3.077484 AGCCTTGTACAATCTGCACAT 57.923 42.857 20.32 4.40 0.00 3.21
5340 5648 9.857957 GAATAAGAACTATAACTCGGGGAATAG 57.142 37.037 4.99 4.99 0.00 1.73
5341 5649 9.597681 AGAATAAGAACTATAACTCGGGGAATA 57.402 33.333 0.00 0.00 0.00 1.75
5366 5928 9.232473 TCTATAGTTGCTACCTACACATCATAG 57.768 37.037 0.00 0.00 0.00 2.23
5401 5964 5.960105 GCAGCAAAATACACTAAGAACGATC 59.040 40.000 0.00 0.00 0.00 3.69
5499 6066 9.573133 CAAATTCAGTTTATACATCCCTTTGTC 57.427 33.333 0.00 0.00 0.00 3.18
5646 6405 6.732896 AACAGGGTCTAGATACAACCATAG 57.267 41.667 0.00 0.00 34.62 2.23
5649 6408 6.781014 CCTATAACAGGGTCTAGATACAACCA 59.219 42.308 0.00 0.00 41.26 3.67
5650 6409 7.229581 CCTATAACAGGGTCTAGATACAACC 57.770 44.000 0.00 0.00 41.26 3.77
5682 6445 1.902938 TGTCATCGAATGGCCACAAA 58.097 45.000 8.16 0.00 32.84 2.83
5694 6457 2.993220 TCGAAGGTTGAACATGTCATCG 59.007 45.455 0.00 0.51 36.70 3.84
5724 6487 7.550906 AGCAACTAGAATGAAAGGTGATAGTTC 59.449 37.037 0.00 0.00 31.83 3.01
5731 6494 6.595326 TCATGTAGCAACTAGAATGAAAGGTG 59.405 38.462 0.00 0.00 33.40 4.00
5738 6503 9.755804 TCTTAGAATCATGTAGCAACTAGAATG 57.244 33.333 0.00 0.00 0.00 2.67
5815 6580 4.472286 TCGTTAAATAGCTTTGCTTGCAC 58.528 39.130 0.00 0.00 40.44 4.57
5885 6815 7.591006 TTGTAAACATTCGAAGATACAGGAC 57.409 36.000 3.35 0.00 35.04 3.85
5897 6835 9.820229 ACATGTAACTGTATTTGTAAACATTCG 57.180 29.630 0.00 0.00 0.00 3.34
5916 6872 7.555965 AGTAGAACATCATACTGCACATGTAA 58.444 34.615 0.00 0.00 31.09 2.41
5917 6873 7.112452 AGTAGAACATCATACTGCACATGTA 57.888 36.000 0.00 0.00 31.09 2.29
6008 6980 1.140252 GCCTATGGGTACGTGTCCATT 59.860 52.381 23.27 11.89 43.01 3.16
6011 6983 0.756903 ATGCCTATGGGTACGTGTCC 59.243 55.000 0.00 0.00 34.45 4.02
6028 7000 7.173907 AGCAATAACAGCTAGGCAGTTTATATG 59.826 37.037 5.71 2.95 41.32 1.78
6030 7002 6.591935 AGCAATAACAGCTAGGCAGTTTATA 58.408 36.000 5.71 0.00 41.32 0.98
6031 7003 5.440610 AGCAATAACAGCTAGGCAGTTTAT 58.559 37.500 5.71 0.00 41.32 1.40
6032 7004 4.843728 AGCAATAACAGCTAGGCAGTTTA 58.156 39.130 5.71 0.00 41.32 2.01
6034 7006 3.356529 AGCAATAACAGCTAGGCAGTT 57.643 42.857 5.70 5.70 41.32 3.16
6036 7008 2.223433 GCAAGCAATAACAGCTAGGCAG 60.223 50.000 0.00 0.00 42.53 4.85
6037 7009 1.745087 GCAAGCAATAACAGCTAGGCA 59.255 47.619 0.00 0.00 42.53 4.75
6039 7011 2.223433 GCAGCAAGCAATAACAGCTAGG 60.223 50.000 0.00 0.00 42.53 3.02
6040 7012 3.062323 GCAGCAAGCAATAACAGCTAG 57.938 47.619 0.00 0.00 42.53 3.42
6064 7064 2.165167 CATCAATGCCACAGAACCACT 58.835 47.619 0.00 0.00 0.00 4.00
6103 7103 9.612620 AGCTAGTAAAATTCAAGAAAATTCACG 57.387 29.630 0.00 0.00 0.00 4.35
6110 7110 9.120538 ACACTTCAGCTAGTAAAATTCAAGAAA 57.879 29.630 0.00 0.00 0.00 2.52
6111 7111 8.559536 CACACTTCAGCTAGTAAAATTCAAGAA 58.440 33.333 0.00 0.00 0.00 2.52
6112 7112 7.931407 TCACACTTCAGCTAGTAAAATTCAAGA 59.069 33.333 0.00 0.00 0.00 3.02
6113 7113 8.087982 TCACACTTCAGCTAGTAAAATTCAAG 57.912 34.615 0.00 0.00 0.00 3.02
6114 7114 8.506437 CATCACACTTCAGCTAGTAAAATTCAA 58.494 33.333 0.00 0.00 0.00 2.69
6115 7115 7.361201 GCATCACACTTCAGCTAGTAAAATTCA 60.361 37.037 0.00 0.00 0.00 2.57
6130 7130 7.255277 GGGAAATAGGAAATAGCATCACACTTC 60.255 40.741 0.00 0.00 0.00 3.01
6154 7154 0.107897 TAACTGCGGCACACATAGGG 60.108 55.000 0.00 0.00 0.00 3.53
6167 7167 8.520351 AGGGAAATTATGTAACAAAGTAACTGC 58.480 33.333 0.00 0.00 0.00 4.40
6256 7260 2.399356 GCTAACCTTGTCGGCCAGC 61.399 63.158 2.24 0.00 36.21 4.85
6310 7680 7.329471 CAGGTTATTACACGGTGATAGATGATG 59.671 40.741 16.29 1.83 0.00 3.07
6608 8012 5.659440 ATAAAAAGGACCACATTTGCGAT 57.341 34.783 0.00 0.00 30.40 4.58
6609 8013 5.010112 TGAATAAAAAGGACCACATTTGCGA 59.990 36.000 0.00 0.00 30.40 5.10
6806 8229 9.897744 TGAATTGATTGAACATACAGAAGAAAC 57.102 29.630 0.00 0.00 0.00 2.78
6876 8307 2.639327 GCGGAAAGCAAGGTGCCAT 61.639 57.895 0.00 0.00 46.52 4.40
6948 8380 3.169099 TGGTAGCAGCTCTTCTCTCTTT 58.831 45.455 0.00 0.00 0.00 2.52
6949 8381 2.813907 TGGTAGCAGCTCTTCTCTCTT 58.186 47.619 0.00 0.00 0.00 2.85
6950 8382 2.523325 TGGTAGCAGCTCTTCTCTCT 57.477 50.000 0.00 0.00 0.00 3.10
6951 8383 2.224018 CCATGGTAGCAGCTCTTCTCTC 60.224 54.545 2.57 0.00 0.00 3.20
6952 8384 1.761784 CCATGGTAGCAGCTCTTCTCT 59.238 52.381 2.57 0.00 0.00 3.10
6977 8409 3.790437 CTCGTGCTCCCATGGGCT 61.790 66.667 27.41 0.00 34.68 5.19
6978 8410 3.746949 CTCTCGTGCTCCCATGGGC 62.747 68.421 27.41 16.06 34.68 5.36
7206 8639 2.343758 GTTGAGGACAGGAGCGCA 59.656 61.111 11.47 0.00 0.00 6.09
7263 8764 3.823330 CCGACCTTCTCCCCGACG 61.823 72.222 0.00 0.00 0.00 5.12
7265 8766 3.228243 TTCCCGACCTTCTCCCCGA 62.228 63.158 0.00 0.00 0.00 5.14
7266 8767 2.682494 TTCCCGACCTTCTCCCCG 60.682 66.667 0.00 0.00 0.00 5.73
7358 8859 3.618780 GACCAGCTCCAGCACCAGG 62.619 68.421 0.48 0.03 45.16 4.45
7495 9005 2.107953 GCAGATCGTGGAGGAGGC 59.892 66.667 0.00 0.00 0.00 4.70
7558 9068 3.191371 CCTTTGGCTTAATCTTTGTCGCT 59.809 43.478 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.