Multiple sequence alignment - TraesCS3B01G607200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G607200 chr3B 100.000 9069 0 0 1 9069 825949185 825958253 0.000000e+00 16748.0
1 TraesCS3B01G607200 chr3B 90.265 113 10 1 473 584 254760704 254760816 7.340000e-31 147.0
2 TraesCS3B01G607200 chr3B 90.179 112 11 0 473 584 725387879 725387990 7.340000e-31 147.0
3 TraesCS3B01G607200 chr3D 97.362 8416 159 39 685 9067 613126934 613118549 0.000000e+00 14253.0
4 TraesCS3B01G607200 chr3D 74.383 527 83 27 8529 9014 353216631 353216116 2.600000e-40 178.0
5 TraesCS3B01G607200 chr3D 85.926 135 15 4 473 605 593241523 593241391 3.410000e-29 141.0
6 TraesCS3B01G607200 chr3D 87.705 122 13 2 474 593 601830893 601831014 3.410000e-29 141.0
7 TraesCS3B01G607200 chr3D 73.176 507 79 31 8557 9012 6980218 6980718 7.390000e-26 130.0
8 TraesCS3B01G607200 chr3D 94.000 50 3 0 196 245 538453019 538452970 9.760000e-10 76.8
9 TraesCS3B01G607200 chr3D 87.273 55 5 1 271 323 325687725 325687671 2.730000e-05 62.1
10 TraesCS3B01G607200 chr3D 96.774 31 1 0 319 349 168853214 168853244 1.600000e-02 52.8
11 TraesCS3B01G607200 chr3A 96.755 8135 191 41 685 8795 749852829 749844744 0.000000e+00 13492.0
12 TraesCS3B01G607200 chr3A 91.406 128 11 0 348 475 85741110 85741237 9.360000e-40 176.0
13 TraesCS3B01G607200 chr3A 90.909 44 1 3 1665 1708 542742488 542742448 1.000000e-03 56.5
14 TraesCS3B01G607200 chr7D 86.667 915 106 13 6599 7503 40796826 40795918 0.000000e+00 1000.0
15 TraesCS3B01G607200 chr7D 86.720 497 54 6 5650 6142 40797507 40797019 8.010000e-150 542.0
16 TraesCS3B01G607200 chr7D 86.774 310 39 2 7171 7479 40720145 40719837 2.420000e-90 344.0
17 TraesCS3B01G607200 chr7D 79.070 430 71 15 7992 8406 40717681 40717256 2.490000e-70 278.0
18 TraesCS3B01G607200 chr7D 92.391 92 6 1 2253 2344 185552781 185552871 7.390000e-26 130.0
19 TraesCS3B01G607200 chr7D 88.119 101 10 2 2250 2349 519264639 519264540 1.600000e-22 119.0
20 TraesCS3B01G607200 chr7D 94.000 50 3 0 196 245 405741915 405741964 9.760000e-10 76.8
21 TraesCS3B01G607200 chr7D 91.837 49 2 2 271 317 447879095 447879047 5.880000e-07 67.6
22 TraesCS3B01G607200 chr7D 88.462 52 4 2 268 317 157776950 157777001 2.730000e-05 62.1
23 TraesCS3B01G607200 chr7D 100.000 28 0 0 322 349 292255059 292255032 1.600000e-02 52.8
24 TraesCS3B01G607200 chr4A 83.439 314 47 5 7168 7479 647378736 647379046 4.140000e-73 287.0
25 TraesCS3B01G607200 chr4A 75.888 535 75 28 8528 9014 711970114 711970642 3.300000e-54 224.0
26 TraesCS3B01G607200 chr4A 75.560 536 76 29 8528 9014 711953356 711953885 7.130000e-51 213.0
27 TraesCS3B01G607200 chr7A 76.626 492 64 22 8570 9014 162762416 162762903 3.300000e-54 224.0
28 TraesCS3B01G607200 chr7A 74.953 535 82 25 8529 9014 726134010 726133479 2.000000e-46 198.0
29 TraesCS3B01G607200 chr5B 75.655 534 79 21 8529 9014 680955920 680955390 1.530000e-52 219.0
30 TraesCS3B01G607200 chr5B 75.468 534 80 21 8529 9014 680952655 680952125 7.130000e-51 213.0
31 TraesCS3B01G607200 chr5B 75.094 534 79 26 8529 9014 684129711 684129184 5.550000e-47 200.0
32 TraesCS3B01G607200 chr5B 91.200 125 11 0 348 472 356305226 356305350 4.350000e-38 171.0
33 TraesCS3B01G607200 chr5B 90.625 128 12 0 348 475 385406365 385406238 4.350000e-38 171.0
34 TraesCS3B01G607200 chr5B 91.589 107 8 1 473 578 274835732 274835838 7.340000e-31 147.0
35 TraesCS3B01G607200 chr5B 83.036 112 16 3 1655 1763 597291901 597291790 2.080000e-16 99.0
36 TraesCS3B01G607200 chr5B 94.118 34 2 0 268 301 295432364 295432397 1.600000e-02 52.8
37 TraesCS3B01G607200 chr4B 75.376 532 83 18 8528 9014 328111281 328110753 7.130000e-51 213.0
38 TraesCS3B01G607200 chr4B 73.694 536 89 20 8528 9014 351427945 351428477 2.620000e-35 161.0
39 TraesCS3B01G607200 chr4B 88.073 109 9 3 2258 2363 491017725 491017618 9.560000e-25 126.0
40 TraesCS3B01G607200 chr4B 90.909 44 4 0 196 239 452323642 452323685 9.830000e-05 60.2
41 TraesCS3B01G607200 chr1A 75.191 524 86 21 8529 9014 536966391 536966908 3.320000e-49 207.0
42 TraesCS3B01G607200 chr1A 73.606 538 88 26 8526 9014 71307076 71306544 3.390000e-34 158.0
43 TraesCS3B01G607200 chr2D 75.709 494 65 25 8570 9014 647713779 647714266 7.180000e-46 196.0
44 TraesCS3B01G607200 chr2D 73.694 536 83 32 8529 9014 39001317 39000790 1.220000e-33 156.0
45 TraesCS3B01G607200 chr2D 79.012 162 31 2 8854 9012 128412250 128412411 3.460000e-19 108.0
46 TraesCS3B01G607200 chr2D 91.379 58 4 1 188 245 80907771 80907715 2.710000e-10 78.7
47 TraesCS3B01G607200 chr5A 74.766 535 81 24 8529 9014 633638706 633639235 3.340000e-44 191.0
48 TraesCS3B01G607200 chr5A 74.593 492 72 22 8570 9013 673939314 673939800 5.630000e-37 167.0
49 TraesCS3B01G607200 chr5A 87.288 118 14 1 474 590 632299728 632299611 5.710000e-27 134.0
50 TraesCS3B01G607200 chr6A 74.484 533 84 23 8529 9014 33141630 33142157 5.590000e-42 183.0
51 TraesCS3B01G607200 chr1B 74.388 531 87 23 8529 9014 641612103 641611577 2.010000e-41 182.0
52 TraesCS3B01G607200 chr1B 91.200 125 11 0 348 472 66052860 66052984 4.350000e-38 171.0
53 TraesCS3B01G607200 chr1B 92.222 90 6 1 2258 2347 626712806 626712894 9.560000e-25 126.0
54 TraesCS3B01G607200 chr1B 90.741 54 5 0 196 249 228321228 228321175 1.260000e-08 73.1
55 TraesCS3B01G607200 chr1B 100.000 29 0 0 135 163 399212089 399212117 5.000000e-03 54.7
56 TraesCS3B01G607200 chr7B 91.200 125 11 0 348 472 526583124 526583248 4.350000e-38 171.0
57 TraesCS3B01G607200 chr7B 90.625 128 12 0 348 475 713350235 713350108 4.350000e-38 171.0
58 TraesCS3B01G607200 chr7B 92.593 54 4 0 196 249 299446165 299446218 2.710000e-10 78.7
59 TraesCS3B01G607200 chr6B 90.625 128 12 0 348 475 671675315 671675188 4.350000e-38 171.0
60 TraesCS3B01G607200 chr6B 78.676 136 18 5 8707 8832 43795392 43795258 7.550000e-11 80.5
61 TraesCS3B01G607200 chr6B 94.737 38 2 0 319 356 401652554 401652517 9.830000e-05 60.2
62 TraesCS3B01G607200 chr2B 90.625 128 12 0 348 475 60658287 60658160 4.350000e-38 171.0
63 TraesCS3B01G607200 chr2B 91.200 125 11 0 348 472 676847090 676847214 4.350000e-38 171.0
64 TraesCS3B01G607200 chr2B 80.892 157 20 7 1612 1764 708066447 708066297 2.070000e-21 115.0
65 TraesCS3B01G607200 chr2B 82.278 79 12 2 1670 1748 51721300 51721224 5.880000e-07 67.6
66 TraesCS3B01G607200 chr2B 100.000 31 0 0 271 301 322589366 322589336 3.540000e-04 58.4
67 TraesCS3B01G607200 chr2A 74.542 491 74 29 8570 9014 9331372 9331857 5.630000e-37 167.0
68 TraesCS3B01G607200 chr2A 88.158 76 9 0 4357 4432 27419195 27419270 3.490000e-14 91.6
69 TraesCS3B01G607200 chr2A 93.103 58 1 2 269 323 312361038 312360981 2.100000e-11 82.4
70 TraesCS3B01G607200 chr1D 88.889 117 12 1 475 590 290948697 290948581 9.490000e-30 143.0
71 TraesCS3B01G607200 chr1D 91.398 93 6 2 2255 2347 464856771 464856861 9.560000e-25 126.0
72 TraesCS3B01G607200 chr1D 74.221 353 64 17 8527 8855 397382583 397382932 1.240000e-23 122.0
73 TraesCS3B01G607200 chr1D 94.000 50 3 0 196 245 425113874 425113825 9.760000e-10 76.8
74 TraesCS3B01G607200 chrUn 89.381 113 11 1 473 584 36388161 36388273 3.410000e-29 141.0
75 TraesCS3B01G607200 chrUn 89.381 113 11 1 473 584 304606956 304607068 3.410000e-29 141.0
76 TraesCS3B01G607200 chrUn 72.989 522 83 27 8543 9014 92804838 92804325 7.390000e-26 130.0
77 TraesCS3B01G607200 chr6D 84.956 113 15 2 2249 2361 17316619 17316729 7.440000e-21 113.0
78 TraesCS3B01G607200 chr6D 77.108 166 16 6 1589 1754 11071948 11071805 9.760000e-10 76.8
79 TraesCS3B01G607200 chr6D 94.000 50 3 0 196 245 286503597 286503548 9.760000e-10 76.8
80 TraesCS3B01G607200 chr5D 88.421 95 10 1 2258 2352 104973015 104972922 7.440000e-21 113.0
81 TraesCS3B01G607200 chr5D 86.022 93 4 3 268 351 29150750 29150842 3.490000e-14 91.6
82 TraesCS3B01G607200 chr5D 81.818 99 18 0 1665 1763 486244609 486244511 5.840000e-12 84.2
83 TraesCS3B01G607200 chr4D 85.714 77 2 3 282 349 92452075 92451999 1.260000e-08 73.1
84 TraesCS3B01G607200 chr4D 80.460 87 9 3 271 349 309706697 309706783 9.830000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G607200 chr3B 825949185 825958253 9068 False 16748 16748 100.0000 1 9069 1 chr3B.!!$F3 9068
1 TraesCS3B01G607200 chr3D 613118549 613126934 8385 True 14253 14253 97.3620 685 9067 1 chr3D.!!$R5 8382
2 TraesCS3B01G607200 chr3A 749844744 749852829 8085 True 13492 13492 96.7550 685 8795 1 chr3A.!!$R2 8110
3 TraesCS3B01G607200 chr7D 40795918 40797507 1589 True 771 1000 86.6935 5650 7503 2 chr7D.!!$R5 1853
4 TraesCS3B01G607200 chr7D 40717256 40720145 2889 True 311 344 82.9220 7171 8406 2 chr7D.!!$R4 1235
5 TraesCS3B01G607200 chr4A 711970114 711970642 528 False 224 224 75.8880 8528 9014 1 chr4A.!!$F3 486
6 TraesCS3B01G607200 chr4A 711953356 711953885 529 False 213 213 75.5600 8528 9014 1 chr4A.!!$F2 486
7 TraesCS3B01G607200 chr5B 680952125 680955920 3795 True 216 219 75.5615 8529 9014 2 chr5B.!!$R4 485
8 TraesCS3B01G607200 chr4B 328110753 328111281 528 True 213 213 75.3760 8528 9014 1 chr4B.!!$R1 486
9 TraesCS3B01G607200 chr1A 536966391 536966908 517 False 207 207 75.1910 8529 9014 1 chr1A.!!$F1 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.036875 AAACGAAGAAGCAGGGGGAG 59.963 55.000 0.00 0.0 0.00 4.30 F
682 683 0.099968 TACCACATAGCGTGCGACTC 59.900 55.000 0.00 0.0 44.91 3.36 F
1223 1230 0.397254 AGGTACATCCTCAGGTCCCG 60.397 60.000 0.00 0.0 44.42 5.14 F
1525 1540 1.002134 CACCGATGCAGGGGTTTCT 60.002 57.895 8.65 0.0 33.23 2.52 F
1836 1854 2.054687 TTTACTGTACACCGAGCACG 57.945 50.000 0.00 0.0 39.43 5.34 F
2877 2896 2.819608 GGTTGATTGCTGCCTAAGACAA 59.180 45.455 0.00 0.0 0.00 3.18 F
3620 3643 2.967887 ACTAGTGGGACCGTGTAACTTT 59.032 45.455 0.00 0.0 31.75 2.66 F
3656 3679 3.096092 TGTTTGAAAGAAGTTGGTGGCT 58.904 40.909 0.00 0.0 0.00 4.75 F
5623 5651 4.218417 GGCCTGATTTCTAACTTCAAAGCA 59.782 41.667 0.00 0.0 0.00 3.91 F
6088 6120 2.084610 TGAACAATGAGAGACCAGCG 57.915 50.000 0.00 0.0 0.00 5.18 F
6348 6381 2.478872 TCCATAGAGACCCCCTTCTG 57.521 55.000 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1854 1.064208 TCTGAGTTCGAGCTCATACGC 59.936 52.381 28.84 12.58 43.61 4.42 R
2424 2443 5.066893 GCAGATCACCAAGCTTTCATATCAA 59.933 40.000 0.00 0.00 0.00 2.57 R
2493 2512 5.189736 TCTTGGCTCAACATACTTCCTGTAT 59.810 40.000 0.00 0.00 42.18 2.29 R
3345 3366 2.702898 TCAACGATGCAAATGTGGTG 57.297 45.000 0.00 0.00 0.00 4.17 R
3463 3484 5.864986 AGTTACCTTTTATGAAATGACGCG 58.135 37.500 3.53 3.53 0.00 6.01 R
3912 3936 1.376037 GTAGCCTGCAGGTCACCAC 60.376 63.158 32.81 18.86 37.57 4.16 R
4949 4976 4.048504 GCAATGGACACACAAAAGGTAAC 58.951 43.478 0.00 0.00 0.00 2.50 R
5635 5663 5.237344 GCAGAAGAGCTCAAACAAAAGTAGA 59.763 40.000 17.77 0.00 0.00 2.59 R
7462 7634 2.041620 CCCAAGGGTTCAGATGGAAAGA 59.958 50.000 0.00 0.00 37.23 2.52 R
7890 8069 3.454082 AGGATTTGGTGAAAAGGTTGCAA 59.546 39.130 0.00 0.00 0.00 4.08 R
8090 8269 1.460504 ACTCCACAATCGCTCGTCTA 58.539 50.000 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.435410 GGGGGTAACGAGTTGCGG 60.435 66.667 0.00 0.00 46.49 5.69
39 40 2.344872 GGGGTAACGAGTTGCGGT 59.655 61.111 0.00 0.00 46.49 5.68
40 41 1.301953 GGGGTAACGAGTTGCGGTT 60.302 57.895 0.00 0.00 46.49 4.44
41 42 1.571215 GGGGTAACGAGTTGCGGTTG 61.571 60.000 0.00 0.00 46.49 3.77
42 43 1.205820 GGTAACGAGTTGCGGTTGC 59.794 57.895 0.00 0.00 46.49 4.17
59 60 4.776322 CGGCGGCACATGGGAGAA 62.776 66.667 10.53 0.00 0.00 2.87
60 61 3.134127 GGCGGCACATGGGAGAAC 61.134 66.667 3.07 0.00 0.00 3.01
61 62 2.359850 GCGGCACATGGGAGAACA 60.360 61.111 0.00 0.00 0.00 3.18
62 63 1.971167 GCGGCACATGGGAGAACAA 60.971 57.895 0.00 0.00 0.00 2.83
63 64 1.523154 GCGGCACATGGGAGAACAAA 61.523 55.000 0.00 0.00 0.00 2.83
64 65 0.240945 CGGCACATGGGAGAACAAAC 59.759 55.000 0.00 0.00 0.00 2.93
65 66 0.240945 GGCACATGGGAGAACAAACG 59.759 55.000 0.00 0.00 0.00 3.60
66 67 1.234821 GCACATGGGAGAACAAACGA 58.765 50.000 0.00 0.00 0.00 3.85
67 68 1.606668 GCACATGGGAGAACAAACGAA 59.393 47.619 0.00 0.00 0.00 3.85
68 69 2.350772 GCACATGGGAGAACAAACGAAG 60.351 50.000 0.00 0.00 0.00 3.79
69 70 3.138304 CACATGGGAGAACAAACGAAGA 58.862 45.455 0.00 0.00 0.00 2.87
70 71 3.563808 CACATGGGAGAACAAACGAAGAA 59.436 43.478 0.00 0.00 0.00 2.52
71 72 3.815401 ACATGGGAGAACAAACGAAGAAG 59.185 43.478 0.00 0.00 0.00 2.85
72 73 2.218603 TGGGAGAACAAACGAAGAAGC 58.781 47.619 0.00 0.00 0.00 3.86
73 74 2.218603 GGGAGAACAAACGAAGAAGCA 58.781 47.619 0.00 0.00 0.00 3.91
74 75 2.224314 GGGAGAACAAACGAAGAAGCAG 59.776 50.000 0.00 0.00 0.00 4.24
75 76 2.224314 GGAGAACAAACGAAGAAGCAGG 59.776 50.000 0.00 0.00 0.00 4.85
76 77 2.222027 AGAACAAACGAAGAAGCAGGG 58.778 47.619 0.00 0.00 0.00 4.45
77 78 1.266989 GAACAAACGAAGAAGCAGGGG 59.733 52.381 0.00 0.00 0.00 4.79
78 79 0.537371 ACAAACGAAGAAGCAGGGGG 60.537 55.000 0.00 0.00 0.00 5.40
79 80 0.250727 CAAACGAAGAAGCAGGGGGA 60.251 55.000 0.00 0.00 0.00 4.81
80 81 0.036875 AAACGAAGAAGCAGGGGGAG 59.963 55.000 0.00 0.00 0.00 4.30
81 82 0.836400 AACGAAGAAGCAGGGGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
82 83 0.836400 ACGAAGAAGCAGGGGGAGAA 60.836 55.000 0.00 0.00 0.00 2.87
83 84 0.324943 CGAAGAAGCAGGGGGAGAAA 59.675 55.000 0.00 0.00 0.00 2.52
84 85 1.677217 CGAAGAAGCAGGGGGAGAAAG 60.677 57.143 0.00 0.00 0.00 2.62
85 86 1.630878 GAAGAAGCAGGGGGAGAAAGA 59.369 52.381 0.00 0.00 0.00 2.52
86 87 1.747444 AGAAGCAGGGGGAGAAAGAA 58.253 50.000 0.00 0.00 0.00 2.52
87 88 2.065799 AGAAGCAGGGGGAGAAAGAAA 58.934 47.619 0.00 0.00 0.00 2.52
88 89 2.040947 AGAAGCAGGGGGAGAAAGAAAG 59.959 50.000 0.00 0.00 0.00 2.62
89 90 1.747444 AGCAGGGGGAGAAAGAAAGA 58.253 50.000 0.00 0.00 0.00 2.52
90 91 2.282900 AGCAGGGGGAGAAAGAAAGAT 58.717 47.619 0.00 0.00 0.00 2.40
91 92 2.025510 AGCAGGGGGAGAAAGAAAGATG 60.026 50.000 0.00 0.00 0.00 2.90
92 93 2.025887 GCAGGGGGAGAAAGAAAGATGA 60.026 50.000 0.00 0.00 0.00 2.92
93 94 3.372458 GCAGGGGGAGAAAGAAAGATGAT 60.372 47.826 0.00 0.00 0.00 2.45
94 95 4.205587 CAGGGGGAGAAAGAAAGATGATG 58.794 47.826 0.00 0.00 0.00 3.07
95 96 2.954989 GGGGGAGAAAGAAAGATGATGC 59.045 50.000 0.00 0.00 0.00 3.91
96 97 3.624777 GGGGAGAAAGAAAGATGATGCA 58.375 45.455 0.00 0.00 0.00 3.96
97 98 3.631227 GGGGAGAAAGAAAGATGATGCAG 59.369 47.826 0.00 0.00 0.00 4.41
98 99 4.521146 GGGAGAAAGAAAGATGATGCAGA 58.479 43.478 0.00 0.00 0.00 4.26
99 100 5.131784 GGGAGAAAGAAAGATGATGCAGAT 58.868 41.667 0.00 0.00 0.00 2.90
100 101 5.008811 GGGAGAAAGAAAGATGATGCAGATG 59.991 44.000 0.00 0.00 0.00 2.90
101 102 5.502153 AGAAAGAAAGATGATGCAGATGC 57.498 39.130 0.00 0.00 42.50 3.91
102 103 4.338682 AGAAAGAAAGATGATGCAGATGCC 59.661 41.667 1.72 0.00 41.18 4.40
103 104 3.292492 AGAAAGATGATGCAGATGCCA 57.708 42.857 1.72 0.00 41.18 4.92
104 105 3.628008 AGAAAGATGATGCAGATGCCAA 58.372 40.909 1.72 0.00 41.18 4.52
105 106 4.021229 AGAAAGATGATGCAGATGCCAAA 58.979 39.130 1.72 0.00 41.18 3.28
106 107 4.649674 AGAAAGATGATGCAGATGCCAAAT 59.350 37.500 1.72 0.00 41.18 2.32
107 108 4.585955 AAGATGATGCAGATGCCAAATC 57.414 40.909 1.72 2.95 41.18 2.17
108 109 2.891580 AGATGATGCAGATGCCAAATCC 59.108 45.455 1.72 0.00 41.18 3.01
109 110 2.146920 TGATGCAGATGCCAAATCCA 57.853 45.000 1.72 0.00 41.18 3.41
110 111 2.458620 TGATGCAGATGCCAAATCCAA 58.541 42.857 1.72 0.00 41.18 3.53
111 112 3.035363 TGATGCAGATGCCAAATCCAAT 58.965 40.909 1.72 0.00 41.18 3.16
112 113 2.971660 TGCAGATGCCAAATCCAATG 57.028 45.000 1.72 0.00 41.18 2.82
113 114 1.483004 TGCAGATGCCAAATCCAATGG 59.517 47.619 1.72 0.00 41.18 3.16
122 123 3.355378 CCAAATCCAATGGCTGTCTACA 58.645 45.455 0.00 0.00 0.00 2.74
123 124 3.763360 CCAAATCCAATGGCTGTCTACAA 59.237 43.478 0.00 0.00 0.00 2.41
124 125 4.380867 CCAAATCCAATGGCTGTCTACAAC 60.381 45.833 0.00 0.00 0.00 3.32
125 126 4.307032 AATCCAATGGCTGTCTACAACT 57.693 40.909 0.00 0.00 0.00 3.16
126 127 3.057969 TCCAATGGCTGTCTACAACTG 57.942 47.619 0.00 0.00 0.00 3.16
127 128 2.371841 TCCAATGGCTGTCTACAACTGT 59.628 45.455 0.00 0.00 0.00 3.55
128 129 3.580895 TCCAATGGCTGTCTACAACTGTA 59.419 43.478 0.00 0.00 0.00 2.74
129 130 4.225042 TCCAATGGCTGTCTACAACTGTAT 59.775 41.667 0.00 0.00 0.00 2.29
130 131 4.572389 CCAATGGCTGTCTACAACTGTATC 59.428 45.833 0.00 0.00 0.00 2.24
131 132 3.503827 TGGCTGTCTACAACTGTATCG 57.496 47.619 0.00 0.00 0.00 2.92
132 133 3.086282 TGGCTGTCTACAACTGTATCGA 58.914 45.455 0.00 0.00 0.00 3.59
133 134 3.128764 TGGCTGTCTACAACTGTATCGAG 59.871 47.826 0.00 0.00 0.00 4.04
134 135 3.109619 GCTGTCTACAACTGTATCGAGC 58.890 50.000 0.00 0.00 0.00 5.03
135 136 3.355270 CTGTCTACAACTGTATCGAGCG 58.645 50.000 0.00 0.00 0.00 5.03
136 137 2.096980 TGTCTACAACTGTATCGAGCGG 59.903 50.000 0.00 0.00 0.00 5.52
137 138 2.097142 GTCTACAACTGTATCGAGCGGT 59.903 50.000 0.00 0.00 0.00 5.68
138 139 2.751259 TCTACAACTGTATCGAGCGGTT 59.249 45.455 10.16 10.16 36.00 4.44
140 141 0.370273 CAACTGTATCGAGCGGTTGC 59.630 55.000 22.82 0.00 43.43 4.17
161 162 2.126110 GCGACCGGCCCAAATTTG 60.126 61.111 11.40 11.40 34.80 2.32
172 173 0.175531 CCAAATTTGGGATGGTCGGC 59.824 55.000 26.87 0.00 44.70 5.54
173 174 0.175531 CAAATTTGGGATGGTCGGCC 59.824 55.000 10.49 0.00 0.00 6.13
174 175 1.319614 AAATTTGGGATGGTCGGCCG 61.320 55.000 22.12 22.12 37.67 6.13
175 176 3.714487 ATTTGGGATGGTCGGCCGG 62.714 63.158 27.83 6.80 37.67 6.13
195 196 2.493713 CGTCTAGCACGCTCCTATTT 57.506 50.000 0.00 0.00 42.87 1.40
196 197 3.620929 CGTCTAGCACGCTCCTATTTA 57.379 47.619 0.00 0.00 42.87 1.40
197 198 3.298317 CGTCTAGCACGCTCCTATTTAC 58.702 50.000 0.00 0.00 42.87 2.01
198 199 3.003482 CGTCTAGCACGCTCCTATTTACT 59.997 47.826 0.00 0.00 42.87 2.24
199 200 4.212847 CGTCTAGCACGCTCCTATTTACTA 59.787 45.833 0.00 0.00 42.87 1.82
200 201 5.451039 GTCTAGCACGCTCCTATTTACTAC 58.549 45.833 0.00 0.00 0.00 2.73
201 202 3.729862 AGCACGCTCCTATTTACTACC 57.270 47.619 0.00 0.00 0.00 3.18
202 203 3.297736 AGCACGCTCCTATTTACTACCT 58.702 45.455 0.00 0.00 0.00 3.08
203 204 3.318557 AGCACGCTCCTATTTACTACCTC 59.681 47.826 0.00 0.00 0.00 3.85
204 205 3.552478 GCACGCTCCTATTTACTACCTCC 60.552 52.174 0.00 0.00 0.00 4.30
205 206 3.635373 CACGCTCCTATTTACTACCTCCA 59.365 47.826 0.00 0.00 0.00 3.86
206 207 4.281182 CACGCTCCTATTTACTACCTCCAT 59.719 45.833 0.00 0.00 0.00 3.41
207 208 4.523558 ACGCTCCTATTTACTACCTCCATC 59.476 45.833 0.00 0.00 0.00 3.51
208 209 4.082136 CGCTCCTATTTACTACCTCCATCC 60.082 50.000 0.00 0.00 0.00 3.51
209 210 5.088026 GCTCCTATTTACTACCTCCATCCT 58.912 45.833 0.00 0.00 0.00 3.24
210 211 6.254522 GCTCCTATTTACTACCTCCATCCTA 58.745 44.000 0.00 0.00 0.00 2.94
211 212 6.378848 GCTCCTATTTACTACCTCCATCCTAG 59.621 46.154 0.00 0.00 0.00 3.02
212 213 7.417811 TCCTATTTACTACCTCCATCCTAGT 57.582 40.000 0.00 0.00 0.00 2.57
213 214 7.834046 TCCTATTTACTACCTCCATCCTAGTT 58.166 38.462 0.00 0.00 0.00 2.24
214 215 8.294690 TCCTATTTACTACCTCCATCCTAGTTT 58.705 37.037 0.00 0.00 0.00 2.66
215 216 9.597681 CCTATTTACTACCTCCATCCTAGTTTA 57.402 37.037 0.00 0.00 0.00 2.01
221 222 8.709272 ACTACCTCCATCCTAGTTTATTAGTC 57.291 38.462 0.00 0.00 0.00 2.59
222 223 6.997942 ACCTCCATCCTAGTTTATTAGTCC 57.002 41.667 0.00 0.00 0.00 3.85
223 224 6.694611 ACCTCCATCCTAGTTTATTAGTCCT 58.305 40.000 0.00 0.00 0.00 3.85
224 225 6.783482 ACCTCCATCCTAGTTTATTAGTCCTC 59.217 42.308 0.00 0.00 0.00 3.71
225 226 7.013834 CCTCCATCCTAGTTTATTAGTCCTCT 58.986 42.308 0.00 0.00 0.00 3.69
226 227 7.511028 CCTCCATCCTAGTTTATTAGTCCTCTT 59.489 40.741 0.00 0.00 0.00 2.85
227 228 8.855804 TCCATCCTAGTTTATTAGTCCTCTTT 57.144 34.615 0.00 0.00 0.00 2.52
228 229 8.925338 TCCATCCTAGTTTATTAGTCCTCTTTC 58.075 37.037 0.00 0.00 0.00 2.62
229 230 8.929487 CCATCCTAGTTTATTAGTCCTCTTTCT 58.071 37.037 0.00 0.00 0.00 2.52
239 240 9.959721 TTATTAGTCCTCTTTCTAATTTGTGCT 57.040 29.630 0.00 0.00 37.78 4.40
241 242 9.959721 ATTAGTCCTCTTTCTAATTTGTGCTAA 57.040 29.630 0.00 0.00 34.48 3.09
242 243 9.787435 TTAGTCCTCTTTCTAATTTGTGCTAAA 57.213 29.630 0.00 0.00 0.00 1.85
243 244 8.870075 AGTCCTCTTTCTAATTTGTGCTAAAT 57.130 30.769 0.00 0.00 0.00 1.40
244 245 9.301897 AGTCCTCTTTCTAATTTGTGCTAAATT 57.698 29.630 13.92 13.92 34.55 1.82
291 292 8.729805 AAAATTGTGCTAAATTTTGACCAAGA 57.270 26.923 16.73 0.00 44.24 3.02
292 293 8.907222 AAATTGTGCTAAATTTTGACCAAGAT 57.093 26.923 3.69 0.00 36.56 2.40
293 294 8.907222 AATTGTGCTAAATTTTGACCAAGATT 57.093 26.923 3.69 0.00 0.00 2.40
294 295 8.907222 ATTGTGCTAAATTTTGACCAAGATTT 57.093 26.923 13.38 13.38 38.28 2.17
295 296 9.995003 ATTGTGCTAAATTTTGACCAAGATTTA 57.005 25.926 13.98 13.98 36.74 1.40
296 297 9.823647 TTGTGCTAAATTTTGACCAAGATTTAA 57.176 25.926 14.96 4.48 37.11 1.52
297 298 9.255304 TGTGCTAAATTTTGACCAAGATTTAAC 57.745 29.630 14.96 12.44 37.11 2.01
298 299 9.476202 GTGCTAAATTTTGACCAAGATTTAACT 57.524 29.630 14.96 0.00 37.11 2.24
299 300 9.474920 TGCTAAATTTTGACCAAGATTTAACTG 57.525 29.630 14.96 8.39 37.11 3.16
300 301 9.691362 GCTAAATTTTGACCAAGATTTAACTGA 57.309 29.630 14.96 1.45 37.11 3.41
303 304 9.883142 AAATTTTGACCAAGATTTAACTGACAA 57.117 25.926 8.81 0.00 34.59 3.18
312 313 9.722056 CCAAGATTTAACTGACAATATTAGTGC 57.278 33.333 0.00 0.00 0.00 4.40
318 319 8.785329 TTAACTGACAATATTAGTGCATGTCA 57.215 30.769 14.46 14.46 45.74 3.58
319 320 7.686438 AACTGACAATATTAGTGCATGTCAA 57.314 32.000 15.64 3.54 46.74 3.18
320 321 7.076842 ACTGACAATATTAGTGCATGTCAAC 57.923 36.000 15.64 0.00 46.74 3.18
321 322 6.654582 ACTGACAATATTAGTGCATGTCAACA 59.345 34.615 15.64 0.00 46.74 3.33
322 323 7.174772 ACTGACAATATTAGTGCATGTCAACAA 59.825 33.333 15.64 0.00 46.74 2.83
323 324 8.054152 TGACAATATTAGTGCATGTCAACAAT 57.946 30.769 13.21 0.00 45.17 2.71
324 325 9.171877 TGACAATATTAGTGCATGTCAACAATA 57.828 29.630 13.21 1.88 45.17 1.90
327 328 9.321590 CAATATTAGTGCATGTCAACAATATCG 57.678 33.333 0.00 0.00 29.78 2.92
328 329 6.925610 ATTAGTGCATGTCAACAATATCGT 57.074 33.333 0.00 0.00 0.00 3.73
329 330 6.735678 TTAGTGCATGTCAACAATATCGTT 57.264 33.333 0.00 0.00 0.00 3.85
330 331 4.973396 AGTGCATGTCAACAATATCGTTG 58.027 39.130 0.00 0.00 46.21 4.10
331 332 4.097714 GTGCATGTCAACAATATCGTTGG 58.902 43.478 6.69 0.00 45.16 3.77
332 333 4.006319 TGCATGTCAACAATATCGTTGGA 58.994 39.130 6.69 0.00 45.16 3.53
333 334 4.639755 TGCATGTCAACAATATCGTTGGAT 59.360 37.500 6.69 0.00 45.16 3.41
334 335 5.125257 TGCATGTCAACAATATCGTTGGATT 59.875 36.000 6.69 0.00 45.16 3.01
335 336 5.682862 GCATGTCAACAATATCGTTGGATTC 59.317 40.000 6.69 0.00 45.16 2.52
336 337 5.463499 TGTCAACAATATCGTTGGATTCG 57.537 39.130 6.69 0.00 45.16 3.34
337 338 4.932799 TGTCAACAATATCGTTGGATTCGT 59.067 37.500 6.69 0.00 45.16 3.85
338 339 6.100668 TGTCAACAATATCGTTGGATTCGTA 58.899 36.000 6.69 0.00 45.16 3.43
339 340 6.759356 TGTCAACAATATCGTTGGATTCGTAT 59.241 34.615 6.69 0.00 45.16 3.06
340 341 7.279090 TGTCAACAATATCGTTGGATTCGTATT 59.721 33.333 6.69 0.00 45.16 1.89
341 342 8.120465 GTCAACAATATCGTTGGATTCGTATTT 58.880 33.333 6.69 0.00 45.16 1.40
342 343 9.315525 TCAACAATATCGTTGGATTCGTATTTA 57.684 29.630 6.69 0.00 45.16 1.40
343 344 9.923786 CAACAATATCGTTGGATTCGTATTTAA 57.076 29.630 0.00 0.00 42.10 1.52
345 346 9.925268 ACAATATCGTTGGATTCGTATTTAAAC 57.075 29.630 0.00 0.00 34.00 2.01
346 347 9.923786 CAATATCGTTGGATTCGTATTTAAACA 57.076 29.630 0.00 0.00 34.00 2.83
350 351 8.706492 TCGTTGGATTCGTATTTAAACATACT 57.294 30.769 0.00 0.00 0.00 2.12
351 352 8.810427 TCGTTGGATTCGTATTTAAACATACTC 58.190 33.333 0.00 0.00 0.00 2.59
352 353 8.060090 CGTTGGATTCGTATTTAAACATACTCC 58.940 37.037 0.00 0.00 0.00 3.85
353 354 8.340443 GTTGGATTCGTATTTAAACATACTCCC 58.660 37.037 0.00 0.00 0.00 4.30
354 355 7.798071 TGGATTCGTATTTAAACATACTCCCT 58.202 34.615 0.00 0.00 0.00 4.20
355 356 7.929785 TGGATTCGTATTTAAACATACTCCCTC 59.070 37.037 0.00 0.00 0.00 4.30
356 357 7.387122 GGATTCGTATTTAAACATACTCCCTCC 59.613 40.741 0.00 0.00 0.00 4.30
357 358 5.835257 TCGTATTTAAACATACTCCCTCCG 58.165 41.667 0.00 0.00 0.00 4.63
358 359 5.360714 TCGTATTTAAACATACTCCCTCCGT 59.639 40.000 0.00 0.00 0.00 4.69
359 360 6.044682 CGTATTTAAACATACTCCCTCCGTT 58.955 40.000 0.00 0.00 0.00 4.44
360 361 6.536224 CGTATTTAAACATACTCCCTCCGTTT 59.464 38.462 0.00 0.00 34.40 3.60
361 362 6.997239 ATTTAAACATACTCCCTCCGTTTC 57.003 37.500 0.00 0.00 32.42 2.78
362 363 5.486735 TTAAACATACTCCCTCCGTTTCA 57.513 39.130 0.00 0.00 32.42 2.69
363 364 3.329929 AACATACTCCCTCCGTTTCAC 57.670 47.619 0.00 0.00 0.00 3.18
364 365 2.253610 ACATACTCCCTCCGTTTCACA 58.746 47.619 0.00 0.00 0.00 3.58
365 366 2.635915 ACATACTCCCTCCGTTTCACAA 59.364 45.455 0.00 0.00 0.00 3.33
366 367 3.263425 ACATACTCCCTCCGTTTCACAAT 59.737 43.478 0.00 0.00 0.00 2.71
367 368 4.468510 ACATACTCCCTCCGTTTCACAATA 59.531 41.667 0.00 0.00 0.00 1.90
368 369 3.329929 ACTCCCTCCGTTTCACAATAC 57.670 47.619 0.00 0.00 0.00 1.89
369 370 2.635915 ACTCCCTCCGTTTCACAATACA 59.364 45.455 0.00 0.00 0.00 2.29
370 371 3.263425 ACTCCCTCCGTTTCACAATACAT 59.737 43.478 0.00 0.00 0.00 2.29
371 372 3.605634 TCCCTCCGTTTCACAATACATG 58.394 45.455 0.00 0.00 0.00 3.21
372 373 2.097466 CCCTCCGTTTCACAATACATGC 59.903 50.000 0.00 0.00 0.00 4.06
373 374 2.097466 CCTCCGTTTCACAATACATGCC 59.903 50.000 0.00 0.00 0.00 4.40
374 375 3.009723 CTCCGTTTCACAATACATGCCT 58.990 45.455 0.00 0.00 0.00 4.75
375 376 3.417101 TCCGTTTCACAATACATGCCTT 58.583 40.909 0.00 0.00 0.00 4.35
376 377 3.438781 TCCGTTTCACAATACATGCCTTC 59.561 43.478 0.00 0.00 0.00 3.46
377 378 3.440173 CCGTTTCACAATACATGCCTTCT 59.560 43.478 0.00 0.00 0.00 2.85
378 379 4.634004 CCGTTTCACAATACATGCCTTCTA 59.366 41.667 0.00 0.00 0.00 2.10
379 380 5.296780 CCGTTTCACAATACATGCCTTCTAT 59.703 40.000 0.00 0.00 0.00 1.98
380 381 6.183360 CCGTTTCACAATACATGCCTTCTATT 60.183 38.462 0.00 0.00 0.00 1.73
381 382 7.011950 CCGTTTCACAATACATGCCTTCTATTA 59.988 37.037 0.00 0.00 0.00 0.98
382 383 8.559536 CGTTTCACAATACATGCCTTCTATTAT 58.440 33.333 0.00 0.00 0.00 1.28
466 467 6.548441 TGTAAGTCAAGTATTTTGGAACGG 57.452 37.500 0.00 0.00 0.00 4.44
467 468 6.289834 TGTAAGTCAAGTATTTTGGAACGGA 58.710 36.000 0.00 0.00 0.00 4.69
468 469 6.766944 TGTAAGTCAAGTATTTTGGAACGGAA 59.233 34.615 0.00 0.00 0.00 4.30
469 470 5.941948 AGTCAAGTATTTTGGAACGGAAG 57.058 39.130 0.00 0.00 0.00 3.46
470 471 4.760204 AGTCAAGTATTTTGGAACGGAAGG 59.240 41.667 0.00 0.00 0.00 3.46
471 472 4.758165 GTCAAGTATTTTGGAACGGAAGGA 59.242 41.667 0.00 0.00 0.00 3.36
472 473 5.239963 GTCAAGTATTTTGGAACGGAAGGAA 59.760 40.000 0.00 0.00 0.00 3.36
473 474 6.007703 TCAAGTATTTTGGAACGGAAGGAAT 58.992 36.000 0.00 0.00 0.00 3.01
474 475 7.120138 GTCAAGTATTTTGGAACGGAAGGAATA 59.880 37.037 0.00 0.00 0.00 1.75
475 476 7.335924 TCAAGTATTTTGGAACGGAAGGAATAG 59.664 37.037 0.00 0.00 0.00 1.73
476 477 6.718294 AGTATTTTGGAACGGAAGGAATAGT 58.282 36.000 0.00 0.00 0.00 2.12
477 478 7.173032 AGTATTTTGGAACGGAAGGAATAGTT 58.827 34.615 0.00 0.00 0.00 2.24
478 479 6.911250 ATTTTGGAACGGAAGGAATAGTTT 57.089 33.333 0.00 0.00 0.00 2.66
479 480 6.718522 TTTTGGAACGGAAGGAATAGTTTT 57.281 33.333 0.00 0.00 0.00 2.43
480 481 6.718522 TTTGGAACGGAAGGAATAGTTTTT 57.281 33.333 0.00 0.00 0.00 1.94
481 482 7.820578 TTTGGAACGGAAGGAATAGTTTTTA 57.179 32.000 0.00 0.00 0.00 1.52
482 483 7.820578 TTGGAACGGAAGGAATAGTTTTTAA 57.179 32.000 0.00 0.00 0.00 1.52
483 484 8.411991 TTGGAACGGAAGGAATAGTTTTTAAT 57.588 30.769 0.00 0.00 0.00 1.40
484 485 7.822658 TGGAACGGAAGGAATAGTTTTTAATG 58.177 34.615 0.00 0.00 0.00 1.90
485 486 7.666388 TGGAACGGAAGGAATAGTTTTTAATGA 59.334 33.333 0.00 0.00 0.00 2.57
486 487 8.683615 GGAACGGAAGGAATAGTTTTTAATGAT 58.316 33.333 0.00 0.00 0.00 2.45
516 517 8.659925 TTTTTAGTGACATGCATGAACATTTT 57.340 26.923 32.75 19.78 0.00 1.82
517 518 7.640616 TTTAGTGACATGCATGAACATTTTG 57.359 32.000 32.75 5.04 0.00 2.44
518 519 5.204409 AGTGACATGCATGAACATTTTGT 57.796 34.783 32.75 8.74 0.00 2.83
519 520 5.603596 AGTGACATGCATGAACATTTTGTT 58.396 33.333 32.75 6.24 44.37 2.83
520 521 6.747125 AGTGACATGCATGAACATTTTGTTA 58.253 32.000 32.75 2.51 41.28 2.41
521 522 6.864685 AGTGACATGCATGAACATTTTGTTAG 59.135 34.615 32.75 1.29 41.28 2.34
522 523 6.642131 GTGACATGCATGAACATTTTGTTAGT 59.358 34.615 32.75 4.97 41.28 2.24
523 524 7.169645 GTGACATGCATGAACATTTTGTTAGTT 59.830 33.333 32.75 4.26 41.28 2.24
524 525 8.355913 TGACATGCATGAACATTTTGTTAGTTA 58.644 29.630 32.75 0.00 41.28 2.24
525 526 9.190858 GACATGCATGAACATTTTGTTAGTTAA 57.809 29.630 32.75 0.00 41.28 2.01
526 527 9.539825 ACATGCATGAACATTTTGTTAGTTAAA 57.460 25.926 32.75 0.00 41.28 1.52
549 550 7.650834 AATTGATGGTTAAAATTTGACACGG 57.349 32.000 3.13 0.00 0.00 4.94
550 551 6.392625 TTGATGGTTAAAATTTGACACGGA 57.607 33.333 3.13 0.00 0.00 4.69
551 552 6.582677 TGATGGTTAAAATTTGACACGGAT 57.417 33.333 3.13 0.00 0.00 4.18
552 553 6.987386 TGATGGTTAAAATTTGACACGGATT 58.013 32.000 3.13 0.00 0.00 3.01
553 554 8.112016 TGATGGTTAAAATTTGACACGGATTA 57.888 30.769 3.13 0.00 0.00 1.75
554 555 8.024285 TGATGGTTAAAATTTGACACGGATTAC 58.976 33.333 3.13 0.00 0.00 1.89
555 556 7.273320 TGGTTAAAATTTGACACGGATTACA 57.727 32.000 3.13 0.00 0.00 2.41
556 557 7.713750 TGGTTAAAATTTGACACGGATTACAA 58.286 30.769 3.13 0.00 0.00 2.41
557 558 8.361139 TGGTTAAAATTTGACACGGATTACAAT 58.639 29.630 3.13 0.00 0.00 2.71
558 559 8.643752 GGTTAAAATTTGACACGGATTACAATG 58.356 33.333 3.13 0.00 0.00 2.82
559 560 8.643752 GTTAAAATTTGACACGGATTACAATGG 58.356 33.333 0.00 0.00 0.00 3.16
560 561 6.582677 AAATTTGACACGGATTACAATGGA 57.417 33.333 0.00 0.00 0.00 3.41
561 562 6.582677 AATTTGACACGGATTACAATGGAA 57.417 33.333 0.00 0.00 0.00 3.53
562 563 6.582677 ATTTGACACGGATTACAATGGAAA 57.417 33.333 0.00 0.00 0.00 3.13
563 564 5.365403 TTGACACGGATTACAATGGAAAC 57.635 39.130 0.00 0.00 0.00 2.78
578 579 3.150767 TGGAAACAATAAACCAGGACGG 58.849 45.455 0.00 0.00 37.44 4.79
579 580 3.181442 TGGAAACAATAAACCAGGACGGA 60.181 43.478 0.00 0.00 37.44 4.69
580 581 4.014406 GGAAACAATAAACCAGGACGGAT 58.986 43.478 0.00 0.00 38.63 4.18
581 582 4.142469 GGAAACAATAAACCAGGACGGATG 60.142 45.833 0.00 0.00 38.63 3.51
582 583 3.713826 ACAATAAACCAGGACGGATGT 57.286 42.857 0.00 0.00 38.63 3.06
583 584 4.829872 ACAATAAACCAGGACGGATGTA 57.170 40.909 0.00 0.00 38.63 2.29
584 585 4.510571 ACAATAAACCAGGACGGATGTAC 58.489 43.478 0.00 0.00 38.63 2.90
585 586 4.224370 ACAATAAACCAGGACGGATGTACT 59.776 41.667 0.00 0.00 41.12 2.73
586 587 5.422970 ACAATAAACCAGGACGGATGTACTA 59.577 40.000 0.00 0.00 37.07 1.82
587 588 5.786264 ATAAACCAGGACGGATGTACTAG 57.214 43.478 0.00 0.00 37.07 2.57
588 589 2.822707 ACCAGGACGGATGTACTAGT 57.177 50.000 0.00 0.00 37.07 2.57
589 590 3.939740 ACCAGGACGGATGTACTAGTA 57.060 47.619 0.00 0.00 37.07 1.82
590 591 3.818180 ACCAGGACGGATGTACTAGTAG 58.182 50.000 1.87 0.00 37.07 2.57
591 592 3.201708 ACCAGGACGGATGTACTAGTAGT 59.798 47.826 8.14 8.14 37.07 2.73
592 593 4.205587 CCAGGACGGATGTACTAGTAGTT 58.794 47.826 8.40 0.00 37.07 2.24
593 594 4.643784 CCAGGACGGATGTACTAGTAGTTT 59.356 45.833 8.40 0.00 37.07 2.66
594 595 5.824624 CCAGGACGGATGTACTAGTAGTTTA 59.175 44.000 8.40 0.00 37.07 2.01
595 596 6.238593 CCAGGACGGATGTACTAGTAGTTTAC 60.239 46.154 8.40 2.10 37.07 2.01
596 597 6.541641 CAGGACGGATGTACTAGTAGTTTACT 59.458 42.308 8.40 0.00 37.07 2.24
597 598 7.712639 CAGGACGGATGTACTAGTAGTTTACTA 59.287 40.741 8.40 0.00 37.07 1.82
598 599 8.267894 AGGACGGATGTACTAGTAGTTTACTAA 58.732 37.037 8.40 0.00 37.57 2.24
599 600 8.338986 GGACGGATGTACTAGTAGTTTACTAAC 58.661 40.741 8.40 0.00 40.49 2.34
600 601 9.103861 GACGGATGTACTAGTAGTTTACTAACT 57.896 37.037 8.40 0.00 46.18 2.24
601 602 9.454859 ACGGATGTACTAGTAGTTTACTAACTT 57.545 33.333 8.40 0.00 41.85 2.66
626 627 6.787085 AACCTAGAATAATCATGTAAGCGC 57.213 37.500 0.00 0.00 0.00 5.92
627 628 5.238583 ACCTAGAATAATCATGTAAGCGCC 58.761 41.667 2.29 0.00 0.00 6.53
628 629 4.631813 CCTAGAATAATCATGTAAGCGCCC 59.368 45.833 2.29 0.00 0.00 6.13
629 630 4.357918 AGAATAATCATGTAAGCGCCCT 57.642 40.909 2.29 0.00 0.00 5.19
630 631 5.483685 AGAATAATCATGTAAGCGCCCTA 57.516 39.130 2.29 0.00 0.00 3.53
631 632 5.482908 AGAATAATCATGTAAGCGCCCTAG 58.517 41.667 2.29 0.00 0.00 3.02
632 633 4.891992 ATAATCATGTAAGCGCCCTAGT 57.108 40.909 2.29 0.00 0.00 2.57
633 634 2.533266 ATCATGTAAGCGCCCTAGTG 57.467 50.000 2.29 0.00 0.00 2.74
634 635 1.480789 TCATGTAAGCGCCCTAGTGA 58.519 50.000 2.29 0.30 0.00 3.41
635 636 2.039418 TCATGTAAGCGCCCTAGTGAT 58.961 47.619 2.29 0.00 0.00 3.06
636 637 2.035961 TCATGTAAGCGCCCTAGTGATC 59.964 50.000 2.29 0.00 0.00 2.92
637 638 0.384309 TGTAAGCGCCCTAGTGATCG 59.616 55.000 2.29 0.00 0.00 3.69
638 639 0.666913 GTAAGCGCCCTAGTGATCGA 59.333 55.000 2.29 0.00 0.00 3.59
639 640 0.666913 TAAGCGCCCTAGTGATCGAC 59.333 55.000 2.29 0.00 0.00 4.20
640 641 1.320344 AAGCGCCCTAGTGATCGACA 61.320 55.000 2.29 0.00 0.00 4.35
641 642 1.109920 AGCGCCCTAGTGATCGACAT 61.110 55.000 2.29 0.00 0.00 3.06
642 643 0.596577 GCGCCCTAGTGATCGACATA 59.403 55.000 0.00 0.00 0.00 2.29
643 644 1.666311 GCGCCCTAGTGATCGACATAC 60.666 57.143 0.00 0.00 0.00 2.39
644 645 1.607148 CGCCCTAGTGATCGACATACA 59.393 52.381 0.00 0.00 0.00 2.29
645 646 2.604855 CGCCCTAGTGATCGACATACAC 60.605 54.545 0.00 0.00 35.15 2.90
646 647 2.604855 GCCCTAGTGATCGACATACACG 60.605 54.545 0.00 0.00 39.19 4.49
647 648 2.617308 CCCTAGTGATCGACATACACGT 59.383 50.000 0.00 0.00 39.19 4.49
648 649 3.066342 CCCTAGTGATCGACATACACGTT 59.934 47.826 0.00 0.00 39.19 3.99
649 650 4.439700 CCCTAGTGATCGACATACACGTTT 60.440 45.833 0.00 0.00 39.19 3.60
650 651 5.100259 CCTAGTGATCGACATACACGTTTT 58.900 41.667 0.00 0.00 39.19 2.43
651 652 5.229469 CCTAGTGATCGACATACACGTTTTC 59.771 44.000 0.00 0.00 39.19 2.29
652 653 4.806330 AGTGATCGACATACACGTTTTCT 58.194 39.130 0.00 0.00 39.19 2.52
653 654 5.946298 AGTGATCGACATACACGTTTTCTA 58.054 37.500 0.00 0.00 39.19 2.10
654 655 6.561614 AGTGATCGACATACACGTTTTCTAT 58.438 36.000 0.00 0.00 39.19 1.98
655 656 7.033791 AGTGATCGACATACACGTTTTCTATT 58.966 34.615 0.00 0.00 39.19 1.73
656 657 8.186163 AGTGATCGACATACACGTTTTCTATTA 58.814 33.333 0.00 0.00 39.19 0.98
657 658 8.469902 GTGATCGACATACACGTTTTCTATTAG 58.530 37.037 0.00 0.00 0.00 1.73
658 659 6.801367 TCGACATACACGTTTTCTATTAGC 57.199 37.500 0.00 0.00 0.00 3.09
659 660 5.453266 TCGACATACACGTTTTCTATTAGCG 59.547 40.000 0.00 0.00 0.00 4.26
660 661 5.385396 ACATACACGTTTTCTATTAGCGC 57.615 39.130 0.00 0.00 0.00 5.92
661 662 4.269363 ACATACACGTTTTCTATTAGCGCC 59.731 41.667 2.29 0.00 0.00 6.53
662 663 2.004733 ACACGTTTTCTATTAGCGCCC 58.995 47.619 2.29 0.00 0.00 6.13
663 664 2.277084 CACGTTTTCTATTAGCGCCCT 58.723 47.619 2.29 0.00 0.00 5.19
664 665 3.119029 ACACGTTTTCTATTAGCGCCCTA 60.119 43.478 2.29 0.00 0.00 3.53
665 666 3.244579 CACGTTTTCTATTAGCGCCCTAC 59.755 47.826 2.29 0.00 0.00 3.18
666 667 2.798847 CGTTTTCTATTAGCGCCCTACC 59.201 50.000 2.29 0.00 0.00 3.18
667 668 3.738899 CGTTTTCTATTAGCGCCCTACCA 60.739 47.826 2.29 0.00 0.00 3.25
668 669 3.464111 TTTCTATTAGCGCCCTACCAC 57.536 47.619 2.29 0.00 0.00 4.16
669 670 2.076207 TCTATTAGCGCCCTACCACA 57.924 50.000 2.29 0.00 0.00 4.17
670 671 2.605257 TCTATTAGCGCCCTACCACAT 58.395 47.619 2.29 0.00 0.00 3.21
671 672 3.770046 TCTATTAGCGCCCTACCACATA 58.230 45.455 2.29 0.00 0.00 2.29
672 673 3.762288 TCTATTAGCGCCCTACCACATAG 59.238 47.826 2.29 0.00 0.00 2.23
673 674 0.391597 TTAGCGCCCTACCACATAGC 59.608 55.000 2.29 0.00 0.00 2.97
675 676 2.812499 CGCCCTACCACATAGCGT 59.188 61.111 0.00 0.00 41.78 5.07
676 677 1.591594 CGCCCTACCACATAGCGTG 60.592 63.158 0.00 0.00 45.92 5.34
677 678 1.887707 GCCCTACCACATAGCGTGC 60.888 63.158 0.00 0.00 44.91 5.34
678 679 1.591594 CCCTACCACATAGCGTGCG 60.592 63.158 0.00 0.00 44.91 5.34
679 680 1.435925 CCTACCACATAGCGTGCGA 59.564 57.895 0.00 0.00 44.91 5.10
680 681 0.870307 CCTACCACATAGCGTGCGAC 60.870 60.000 0.00 0.00 44.91 5.19
681 682 0.100682 CTACCACATAGCGTGCGACT 59.899 55.000 0.00 0.00 44.91 4.18
682 683 0.099968 TACCACATAGCGTGCGACTC 59.900 55.000 0.00 0.00 44.91 3.36
683 684 1.878522 CCACATAGCGTGCGACTCC 60.879 63.158 0.00 0.00 44.91 3.85
703 704 1.676678 CGTCATCGACTCCCATGGGT 61.677 60.000 30.28 12.71 39.71 4.51
981 988 3.503363 GGTCGTCGGTCGGATCGT 61.503 66.667 10.85 0.00 40.32 3.73
1223 1230 0.397254 AGGTACATCCTCAGGTCCCG 60.397 60.000 0.00 0.00 44.42 5.14
1344 1353 2.390225 TATTGGCAACTGTTTGGGGT 57.610 45.000 0.00 0.00 32.81 4.95
1345 1354 1.047801 ATTGGCAACTGTTTGGGGTC 58.952 50.000 0.00 0.00 32.81 4.46
1365 1374 5.104900 GGGTCCTGAAGATCAGTTTAAGCTA 60.105 44.000 6.62 0.00 42.80 3.32
1394 1409 9.262358 CTTAATCAGTTACAGGGTTATTAGCTC 57.738 37.037 0.00 0.00 0.00 4.09
1414 1429 6.685657 AGCTCTCAGGCAAAAAGAATAAAAG 58.314 36.000 0.00 0.00 34.17 2.27
1525 1540 1.002134 CACCGATGCAGGGGTTTCT 60.002 57.895 8.65 0.00 33.23 2.52
1582 1597 2.094675 CAGAAAGCATAAGGTGGTGGG 58.905 52.381 0.00 0.00 38.84 4.61
1709 1725 6.020984 GGCAAACTTTGACAAATGTTTTGAC 58.979 36.000 22.04 18.62 40.02 3.18
1748 1764 7.842982 TCATCATTGAATGACATTTGTGGAAT 58.157 30.769 10.45 0.00 43.01 3.01
1784 1800 7.280428 ACAAATCAAATGTCATGTTTGCTTCAA 59.720 29.630 3.09 0.00 36.69 2.69
1836 1854 2.054687 TTTACTGTACACCGAGCACG 57.945 50.000 0.00 0.00 39.43 5.34
2146 2164 7.225145 GCACCACATCATAATTGCAAATACATT 59.775 33.333 1.71 0.00 0.00 2.71
2161 2179 8.973378 TGCAAATACATTTACTTGTAGTTTTGC 58.027 29.630 19.11 19.11 46.24 3.68
2240 2258 5.025453 ACCCAAAATCATAGGACTGCATTT 58.975 37.500 0.00 0.00 0.00 2.32
2380 2399 4.927267 TCTTCCTTATTTTGGGAGCTCA 57.073 40.909 17.19 0.00 32.80 4.26
2493 2512 2.919772 TGTCTGGGAGATGTCCACTA 57.080 50.000 11.62 0.00 46.07 2.74
2877 2896 2.819608 GGTTGATTGCTGCCTAAGACAA 59.180 45.455 0.00 0.00 0.00 3.18
3373 3394 5.048083 ACATTTGCATCGTTGAAGGTATGTT 60.048 36.000 0.00 0.00 0.00 2.71
3463 3484 4.569564 CGTATGCTGGGTTCTTAAGTTACC 59.430 45.833 16.41 16.41 0.00 2.85
3508 3529 7.703058 ACTCGGTCCAAAATCATTAGAAAAT 57.297 32.000 0.00 0.00 0.00 1.82
3620 3643 2.967887 ACTAGTGGGACCGTGTAACTTT 59.032 45.455 0.00 0.00 31.75 2.66
3656 3679 3.096092 TGTTTGAAAGAAGTTGGTGGCT 58.904 40.909 0.00 0.00 0.00 4.75
3764 3788 6.146021 CCCACACAAAAGTGATAAAGAAATGC 59.854 38.462 2.22 0.00 42.05 3.56
4279 4304 8.452534 GCATAATTTTCATTTTCATTGCAAGGA 58.547 29.630 10.22 10.22 0.00 3.36
4642 4667 7.962964 TGTGAGTCTTGTTGGTATTTAAGAG 57.037 36.000 0.00 0.00 30.51 2.85
5623 5651 4.218417 GGCCTGATTTCTAACTTCAAAGCA 59.782 41.667 0.00 0.00 0.00 3.91
5807 5835 3.181480 GGTCAAAGCAGGTTTGTAAAGCA 60.181 43.478 21.61 1.93 45.18 3.91
5987 6015 6.435428 CAGGTACTTCACGTTAAATTTTGCT 58.565 36.000 0.00 0.00 34.60 3.91
6088 6120 2.084610 TGAACAATGAGAGACCAGCG 57.915 50.000 0.00 0.00 0.00 5.18
6326 6359 4.020573 ACCTCCATTAACTTGATCACGACA 60.021 41.667 6.16 0.00 0.00 4.35
6337 6370 6.045318 ACTTGATCACGACATTTCCATAGAG 58.955 40.000 6.16 0.00 0.00 2.43
6348 6381 2.478872 TCCATAGAGACCCCCTTCTG 57.521 55.000 0.00 0.00 0.00 3.02
7189 7360 4.273969 TGGTTGTTGGATACGAGTGTTTTC 59.726 41.667 0.00 0.00 42.51 2.29
7204 7375 5.591099 AGTGTTTTCATGTCCATTTGTGAC 58.409 37.500 0.00 0.00 0.00 3.67
7220 7391 9.357652 CCATTTGTGACTCAAAATAGTAAATGG 57.642 33.333 6.76 12.10 46.97 3.16
7297 7469 9.057089 GTGAATTACCTCTAAATGAATACCCAG 57.943 37.037 0.00 0.00 0.00 4.45
7462 7634 9.553064 GTCAATCAAGGTATTCACTGAAGATAT 57.447 33.333 0.00 0.00 0.00 1.63
7499 7672 5.604650 ACCCTTGGGATGTACAAAATTTTCA 59.395 36.000 13.39 0.00 0.00 2.69
7505 7678 5.120053 GGGATGTACAAAATTTTCAAAGCGG 59.880 40.000 0.00 0.00 0.00 5.52
7514 7687 8.085296 ACAAAATTTTCAAAGCGGTCACATATA 58.915 29.630 0.00 0.00 0.00 0.86
7862 8041 6.921307 CACAGTTTATTTCGGTAAGCCTTTTT 59.079 34.615 0.00 0.00 0.00 1.94
8090 8269 2.181021 GATGTCGCCGGTTCTCGT 59.819 61.111 1.90 0.00 37.11 4.18
8136 8316 7.093024 ACCCATACTAGTAGCTTACACAACATT 60.093 37.037 8.85 0.00 0.00 2.71
8420 8617 7.204496 TGAAATAATTTTGCAAGCAAGCATT 57.796 28.000 7.60 12.00 45.19 3.56
8644 9845 3.325753 AGTGCCAGGGCCTGACTC 61.326 66.667 34.84 23.67 41.09 3.36
8738 9948 4.398673 TGCATGCTTGTGCTATTATGTTGA 59.601 37.500 20.33 0.00 45.27 3.18
8786 10001 7.347222 ACTCCCACATTATACAAGAGGTCATAA 59.653 37.037 0.00 0.00 0.00 1.90
8787 10002 7.735917 TCCCACATTATACAAGAGGTCATAAG 58.264 38.462 0.00 0.00 0.00 1.73
8791 10006 9.469807 CACATTATACAAGAGGTCATAAGAGTC 57.530 37.037 0.00 0.00 0.00 3.36
8792 10007 8.643324 ACATTATACAAGAGGTCATAAGAGTCC 58.357 37.037 0.00 0.00 0.00 3.85
8874 10119 4.105697 TCTTCCAATAAACTCCACCTTGGT 59.894 41.667 0.00 0.00 39.03 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.374252 ACGACCCAGCGTCAATGAC 60.374 57.895 2.75 2.75 41.22 3.06
1 2 3.056458 ACGACCCAGCGTCAATGA 58.944 55.556 0.00 0.00 41.22 2.57
21 22 2.435410 CCGCAACTCGTTACCCCC 60.435 66.667 0.00 0.00 36.19 5.40
22 23 1.301953 AACCGCAACTCGTTACCCC 60.302 57.895 0.00 0.00 36.19 4.95
23 24 1.864176 CAACCGCAACTCGTTACCC 59.136 57.895 0.00 0.00 36.19 3.69
24 25 1.205820 GCAACCGCAACTCGTTACC 59.794 57.895 0.00 0.00 38.36 2.85
25 26 1.154727 CGCAACCGCAACTCGTTAC 60.155 57.895 0.00 0.00 38.40 2.50
26 27 2.311701 CCGCAACCGCAACTCGTTA 61.312 57.895 0.00 0.00 38.40 3.18
27 28 3.645975 CCGCAACCGCAACTCGTT 61.646 61.111 0.00 0.00 38.40 3.85
42 43 4.776322 TTCTCCCATGTGCCGCCG 62.776 66.667 0.00 0.00 0.00 6.46
43 44 3.134127 GTTCTCCCATGTGCCGCC 61.134 66.667 0.00 0.00 0.00 6.13
44 45 1.523154 TTTGTTCTCCCATGTGCCGC 61.523 55.000 0.00 0.00 0.00 6.53
45 46 0.240945 GTTTGTTCTCCCATGTGCCG 59.759 55.000 0.00 0.00 0.00 5.69
46 47 0.240945 CGTTTGTTCTCCCATGTGCC 59.759 55.000 0.00 0.00 0.00 5.01
47 48 1.234821 TCGTTTGTTCTCCCATGTGC 58.765 50.000 0.00 0.00 0.00 4.57
48 49 3.138304 TCTTCGTTTGTTCTCCCATGTG 58.862 45.455 0.00 0.00 0.00 3.21
49 50 3.485463 TCTTCGTTTGTTCTCCCATGT 57.515 42.857 0.00 0.00 0.00 3.21
50 51 3.365364 GCTTCTTCGTTTGTTCTCCCATG 60.365 47.826 0.00 0.00 0.00 3.66
51 52 2.814336 GCTTCTTCGTTTGTTCTCCCAT 59.186 45.455 0.00 0.00 0.00 4.00
52 53 2.218603 GCTTCTTCGTTTGTTCTCCCA 58.781 47.619 0.00 0.00 0.00 4.37
53 54 2.218603 TGCTTCTTCGTTTGTTCTCCC 58.781 47.619 0.00 0.00 0.00 4.30
54 55 2.224314 CCTGCTTCTTCGTTTGTTCTCC 59.776 50.000 0.00 0.00 0.00 3.71
55 56 2.224314 CCCTGCTTCTTCGTTTGTTCTC 59.776 50.000 0.00 0.00 0.00 2.87
56 57 2.222027 CCCTGCTTCTTCGTTTGTTCT 58.778 47.619 0.00 0.00 0.00 3.01
57 58 1.266989 CCCCTGCTTCTTCGTTTGTTC 59.733 52.381 0.00 0.00 0.00 3.18
58 59 1.318576 CCCCTGCTTCTTCGTTTGTT 58.681 50.000 0.00 0.00 0.00 2.83
59 60 0.537371 CCCCCTGCTTCTTCGTTTGT 60.537 55.000 0.00 0.00 0.00 2.83
60 61 0.250727 TCCCCCTGCTTCTTCGTTTG 60.251 55.000 0.00 0.00 0.00 2.93
61 62 0.036875 CTCCCCCTGCTTCTTCGTTT 59.963 55.000 0.00 0.00 0.00 3.60
62 63 0.836400 TCTCCCCCTGCTTCTTCGTT 60.836 55.000 0.00 0.00 0.00 3.85
63 64 0.836400 TTCTCCCCCTGCTTCTTCGT 60.836 55.000 0.00 0.00 0.00 3.85
64 65 0.324943 TTTCTCCCCCTGCTTCTTCG 59.675 55.000 0.00 0.00 0.00 3.79
65 66 1.630878 TCTTTCTCCCCCTGCTTCTTC 59.369 52.381 0.00 0.00 0.00 2.87
66 67 1.747444 TCTTTCTCCCCCTGCTTCTT 58.253 50.000 0.00 0.00 0.00 2.52
67 68 1.747444 TTCTTTCTCCCCCTGCTTCT 58.253 50.000 0.00 0.00 0.00 2.85
68 69 2.040412 TCTTTCTTTCTCCCCCTGCTTC 59.960 50.000 0.00 0.00 0.00 3.86
69 70 2.065799 TCTTTCTTTCTCCCCCTGCTT 58.934 47.619 0.00 0.00 0.00 3.91
70 71 1.747444 TCTTTCTTTCTCCCCCTGCT 58.253 50.000 0.00 0.00 0.00 4.24
71 72 2.025887 TCATCTTTCTTTCTCCCCCTGC 60.026 50.000 0.00 0.00 0.00 4.85
72 73 4.205587 CATCATCTTTCTTTCTCCCCCTG 58.794 47.826 0.00 0.00 0.00 4.45
73 74 3.372458 GCATCATCTTTCTTTCTCCCCCT 60.372 47.826 0.00 0.00 0.00 4.79
74 75 2.954989 GCATCATCTTTCTTTCTCCCCC 59.045 50.000 0.00 0.00 0.00 5.40
75 76 3.624777 TGCATCATCTTTCTTTCTCCCC 58.375 45.455 0.00 0.00 0.00 4.81
76 77 4.521146 TCTGCATCATCTTTCTTTCTCCC 58.479 43.478 0.00 0.00 0.00 4.30
77 78 5.505985 GCATCTGCATCATCTTTCTTTCTCC 60.506 44.000 0.00 0.00 41.59 3.71
78 79 5.505985 GGCATCTGCATCATCTTTCTTTCTC 60.506 44.000 4.33 0.00 44.36 2.87
79 80 4.338682 GGCATCTGCATCATCTTTCTTTCT 59.661 41.667 4.33 0.00 44.36 2.52
80 81 4.097437 TGGCATCTGCATCATCTTTCTTTC 59.903 41.667 4.33 0.00 44.36 2.62
81 82 4.021229 TGGCATCTGCATCATCTTTCTTT 58.979 39.130 4.33 0.00 44.36 2.52
82 83 3.628008 TGGCATCTGCATCATCTTTCTT 58.372 40.909 4.33 0.00 44.36 2.52
83 84 3.292492 TGGCATCTGCATCATCTTTCT 57.708 42.857 4.33 0.00 44.36 2.52
84 85 4.380841 TTTGGCATCTGCATCATCTTTC 57.619 40.909 4.33 0.00 44.36 2.62
85 86 4.202223 GGATTTGGCATCTGCATCATCTTT 60.202 41.667 4.33 0.00 44.36 2.52
86 87 3.321111 GGATTTGGCATCTGCATCATCTT 59.679 43.478 4.33 0.00 44.36 2.40
87 88 2.891580 GGATTTGGCATCTGCATCATCT 59.108 45.455 4.33 0.00 44.36 2.90
88 89 2.626266 TGGATTTGGCATCTGCATCATC 59.374 45.455 4.33 2.02 44.36 2.92
89 90 2.673258 TGGATTTGGCATCTGCATCAT 58.327 42.857 4.33 0.00 44.36 2.45
90 91 2.146920 TGGATTTGGCATCTGCATCA 57.853 45.000 4.33 0.00 44.36 3.07
91 92 3.390135 CATTGGATTTGGCATCTGCATC 58.610 45.455 4.33 0.00 44.36 3.91
92 93 2.104111 CCATTGGATTTGGCATCTGCAT 59.896 45.455 4.33 0.00 44.36 3.96
93 94 1.483004 CCATTGGATTTGGCATCTGCA 59.517 47.619 4.33 0.00 44.36 4.41
94 95 2.234300 CCATTGGATTTGGCATCTGC 57.766 50.000 0.00 0.00 41.14 4.26
101 102 3.355378 TGTAGACAGCCATTGGATTTGG 58.645 45.455 6.95 0.00 37.31 3.28
102 103 4.460382 AGTTGTAGACAGCCATTGGATTTG 59.540 41.667 6.95 3.90 0.00 2.32
103 104 4.460382 CAGTTGTAGACAGCCATTGGATTT 59.540 41.667 6.95 0.00 0.00 2.17
104 105 4.012374 CAGTTGTAGACAGCCATTGGATT 58.988 43.478 6.95 0.00 0.00 3.01
105 106 3.009473 ACAGTTGTAGACAGCCATTGGAT 59.991 43.478 6.95 0.00 0.00 3.41
106 107 2.371841 ACAGTTGTAGACAGCCATTGGA 59.628 45.455 6.95 0.00 0.00 3.53
107 108 2.783135 ACAGTTGTAGACAGCCATTGG 58.217 47.619 0.00 0.00 0.00 3.16
108 109 4.268644 CGATACAGTTGTAGACAGCCATTG 59.731 45.833 0.00 0.00 33.52 2.82
109 110 4.159693 TCGATACAGTTGTAGACAGCCATT 59.840 41.667 0.00 0.00 33.52 3.16
110 111 3.699538 TCGATACAGTTGTAGACAGCCAT 59.300 43.478 0.00 0.00 33.52 4.40
111 112 3.086282 TCGATACAGTTGTAGACAGCCA 58.914 45.455 0.00 0.00 33.52 4.75
112 113 3.696898 CTCGATACAGTTGTAGACAGCC 58.303 50.000 0.00 0.00 33.52 4.85
113 114 3.109619 GCTCGATACAGTTGTAGACAGC 58.890 50.000 0.00 1.86 33.52 4.40
114 115 3.355270 CGCTCGATACAGTTGTAGACAG 58.645 50.000 0.00 0.00 33.52 3.51
115 116 2.096980 CCGCTCGATACAGTTGTAGACA 59.903 50.000 0.00 0.00 33.52 3.41
116 117 2.097142 ACCGCTCGATACAGTTGTAGAC 59.903 50.000 0.00 0.00 33.52 2.59
117 118 2.362736 ACCGCTCGATACAGTTGTAGA 58.637 47.619 0.00 0.00 33.52 2.59
118 119 2.846039 ACCGCTCGATACAGTTGTAG 57.154 50.000 0.00 0.00 33.52 2.74
119 120 2.871133 CAACCGCTCGATACAGTTGTA 58.129 47.619 6.54 0.00 34.51 2.41
120 121 1.710013 CAACCGCTCGATACAGTTGT 58.290 50.000 6.54 0.00 34.51 3.32
121 122 0.370273 GCAACCGCTCGATACAGTTG 59.630 55.000 9.28 9.28 40.55 3.16
122 123 1.076533 CGCAACCGCTCGATACAGTT 61.077 55.000 0.00 0.00 35.30 3.16
123 124 1.516386 CGCAACCGCTCGATACAGT 60.516 57.895 0.00 0.00 35.30 3.55
124 125 1.516386 ACGCAACCGCTCGATACAG 60.516 57.895 0.00 0.00 38.22 2.74
125 126 1.803922 CACGCAACCGCTCGATACA 60.804 57.895 0.00 0.00 38.22 2.29
126 127 2.514013 CCACGCAACCGCTCGATAC 61.514 63.158 0.00 0.00 38.22 2.24
127 128 2.202690 CCACGCAACCGCTCGATA 60.203 61.111 0.00 0.00 38.22 2.92
144 145 2.126110 CAAATTTGGGCCGGTCGC 60.126 61.111 10.49 4.53 0.00 5.19
145 146 2.571231 CCAAATTTGGGCCGGTCG 59.429 61.111 26.87 1.10 44.70 4.79
153 154 3.173078 GGCCGACCATCCCAAATTTGG 62.173 57.143 27.46 27.46 41.28 3.28
154 155 0.175531 GGCCGACCATCCCAAATTTG 59.824 55.000 11.40 11.40 35.26 2.32
155 156 1.319614 CGGCCGACCATCCCAAATTT 61.320 55.000 24.07 0.00 34.57 1.82
156 157 1.752694 CGGCCGACCATCCCAAATT 60.753 57.895 24.07 0.00 34.57 1.82
157 158 2.124320 CGGCCGACCATCCCAAAT 60.124 61.111 24.07 0.00 34.57 2.32
158 159 4.418328 CCGGCCGACCATCCCAAA 62.418 66.667 30.73 0.00 34.57 3.28
177 178 4.571372 AGTAAATAGGAGCGTGCTAGAC 57.429 45.455 0.00 0.00 0.00 2.59
178 179 4.518211 GGTAGTAAATAGGAGCGTGCTAGA 59.482 45.833 0.00 0.00 0.00 2.43
179 180 4.519730 AGGTAGTAAATAGGAGCGTGCTAG 59.480 45.833 0.00 0.00 0.00 3.42
180 181 4.467769 AGGTAGTAAATAGGAGCGTGCTA 58.532 43.478 0.00 0.00 0.00 3.49
181 182 3.297736 AGGTAGTAAATAGGAGCGTGCT 58.702 45.455 0.00 0.00 0.00 4.40
182 183 3.552478 GGAGGTAGTAAATAGGAGCGTGC 60.552 52.174 0.00 0.00 0.00 5.34
183 184 3.635373 TGGAGGTAGTAAATAGGAGCGTG 59.365 47.826 0.00 0.00 0.00 5.34
184 185 3.907221 TGGAGGTAGTAAATAGGAGCGT 58.093 45.455 0.00 0.00 0.00 5.07
185 186 4.082136 GGATGGAGGTAGTAAATAGGAGCG 60.082 50.000 0.00 0.00 0.00 5.03
186 187 5.088026 AGGATGGAGGTAGTAAATAGGAGC 58.912 45.833 0.00 0.00 0.00 4.70
187 188 7.471890 ACTAGGATGGAGGTAGTAAATAGGAG 58.528 42.308 0.00 0.00 0.00 3.69
188 189 7.417811 ACTAGGATGGAGGTAGTAAATAGGA 57.582 40.000 0.00 0.00 0.00 2.94
189 190 8.493787 AAACTAGGATGGAGGTAGTAAATAGG 57.506 38.462 0.00 0.00 0.00 2.57
195 196 9.804977 GACTAATAAACTAGGATGGAGGTAGTA 57.195 37.037 0.00 0.00 0.00 1.82
196 197 7.729431 GGACTAATAAACTAGGATGGAGGTAGT 59.271 40.741 0.00 0.00 0.00 2.73
197 198 7.951245 AGGACTAATAAACTAGGATGGAGGTAG 59.049 40.741 0.00 0.00 0.00 3.18
198 199 7.834046 AGGACTAATAAACTAGGATGGAGGTA 58.166 38.462 0.00 0.00 0.00 3.08
199 200 6.694611 AGGACTAATAAACTAGGATGGAGGT 58.305 40.000 0.00 0.00 0.00 3.85
200 201 7.013834 AGAGGACTAATAAACTAGGATGGAGG 58.986 42.308 0.00 0.00 0.00 4.30
201 202 8.485578 AAGAGGACTAATAAACTAGGATGGAG 57.514 38.462 0.00 0.00 0.00 3.86
202 203 8.855804 AAAGAGGACTAATAAACTAGGATGGA 57.144 34.615 0.00 0.00 0.00 3.41
203 204 8.929487 AGAAAGAGGACTAATAAACTAGGATGG 58.071 37.037 0.00 0.00 0.00 3.51
213 214 9.959721 AGCACAAATTAGAAAGAGGACTAATAA 57.040 29.630 0.00 0.00 38.04 1.40
215 216 9.959721 TTAGCACAAATTAGAAAGAGGACTAAT 57.040 29.630 0.00 0.00 39.85 1.73
216 217 9.787435 TTTAGCACAAATTAGAAAGAGGACTAA 57.213 29.630 0.00 0.00 33.97 2.24
217 218 9.959721 ATTTAGCACAAATTAGAAAGAGGACTA 57.040 29.630 0.00 0.00 0.00 2.59
218 219 8.870075 ATTTAGCACAAATTAGAAAGAGGACT 57.130 30.769 0.00 0.00 0.00 3.85
265 266 9.171877 TCTTGGTCAAAATTTAGCACAATTTTT 57.828 25.926 13.25 6.78 41.53 1.94
266 267 8.729805 TCTTGGTCAAAATTTAGCACAATTTT 57.270 26.923 11.06 11.06 43.91 1.82
267 268 8.907222 ATCTTGGTCAAAATTTAGCACAATTT 57.093 26.923 0.00 1.08 37.86 1.82
268 269 8.907222 AATCTTGGTCAAAATTTAGCACAATT 57.093 26.923 0.00 0.00 0.00 2.32
269 270 8.907222 AAATCTTGGTCAAAATTTAGCACAAT 57.093 26.923 0.00 0.00 0.00 2.71
270 271 9.823647 TTAAATCTTGGTCAAAATTTAGCACAA 57.176 25.926 0.00 0.00 0.00 3.33
271 272 9.255304 GTTAAATCTTGGTCAAAATTTAGCACA 57.745 29.630 9.76 0.00 30.10 4.57
272 273 9.476202 AGTTAAATCTTGGTCAAAATTTAGCAC 57.524 29.630 14.29 7.28 31.29 4.40
273 274 9.474920 CAGTTAAATCTTGGTCAAAATTTAGCA 57.525 29.630 14.29 0.00 31.29 3.49
274 275 9.691362 TCAGTTAAATCTTGGTCAAAATTTAGC 57.309 29.630 7.71 7.71 0.00 3.09
277 278 9.883142 TTGTCAGTTAAATCTTGGTCAAAATTT 57.117 25.926 1.41 1.41 0.00 1.82
286 287 9.722056 GCACTAATATTGTCAGTTAAATCTTGG 57.278 33.333 0.00 0.00 0.00 3.61
292 293 9.225436 TGACATGCACTAATATTGTCAGTTAAA 57.775 29.630 11.90 0.00 41.11 1.52
293 294 8.785329 TGACATGCACTAATATTGTCAGTTAA 57.215 30.769 11.90 0.00 41.11 2.01
294 295 8.664798 GTTGACATGCACTAATATTGTCAGTTA 58.335 33.333 14.63 1.40 45.12 2.24
295 296 7.174772 TGTTGACATGCACTAATATTGTCAGTT 59.825 33.333 14.63 0.00 45.12 3.16
296 297 6.654582 TGTTGACATGCACTAATATTGTCAGT 59.345 34.615 14.63 0.00 45.12 3.41
297 298 7.075674 TGTTGACATGCACTAATATTGTCAG 57.924 36.000 14.63 0.00 45.12 3.51
298 299 7.446001 TTGTTGACATGCACTAATATTGTCA 57.554 32.000 11.90 11.90 43.46 3.58
301 302 9.321590 CGATATTGTTGACATGCACTAATATTG 57.678 33.333 0.00 5.79 31.01 1.90
302 303 9.056005 ACGATATTGTTGACATGCACTAATATT 57.944 29.630 0.00 0.00 31.01 1.28
303 304 8.607441 ACGATATTGTTGACATGCACTAATAT 57.393 30.769 0.00 5.47 32.36 1.28
304 305 8.432110 AACGATATTGTTGACATGCACTAATA 57.568 30.769 7.58 1.16 0.00 0.98
305 306 6.925610 ACGATATTGTTGACATGCACTAAT 57.074 33.333 0.00 0.00 0.00 1.73
306 307 6.735678 AACGATATTGTTGACATGCACTAA 57.264 33.333 7.58 0.00 0.00 2.24
317 318 9.923786 TTAAATACGAATCCAACGATATTGTTG 57.076 29.630 23.82 23.82 46.86 3.33
319 320 9.925268 GTTTAAATACGAATCCAACGATATTGT 57.075 29.630 0.00 0.00 34.70 2.71
320 321 9.923786 TGTTTAAATACGAATCCAACGATATTG 57.076 29.630 0.00 0.00 34.70 1.90
324 325 9.321562 AGTATGTTTAAATACGAATCCAACGAT 57.678 29.630 0.00 0.00 37.96 3.73
325 326 8.706492 AGTATGTTTAAATACGAATCCAACGA 57.294 30.769 0.00 0.00 37.96 3.85
326 327 8.060090 GGAGTATGTTTAAATACGAATCCAACG 58.940 37.037 9.11 0.00 37.96 4.10
327 328 8.340443 GGGAGTATGTTTAAATACGAATCCAAC 58.660 37.037 13.57 0.00 37.96 3.77
328 329 8.269317 AGGGAGTATGTTTAAATACGAATCCAA 58.731 33.333 13.57 0.00 37.96 3.53
329 330 7.798071 AGGGAGTATGTTTAAATACGAATCCA 58.202 34.615 13.57 0.00 37.96 3.41
330 331 7.387122 GGAGGGAGTATGTTTAAATACGAATCC 59.613 40.741 6.62 6.62 37.96 3.01
331 332 7.115947 CGGAGGGAGTATGTTTAAATACGAATC 59.884 40.741 0.00 0.00 37.96 2.52
332 333 6.927381 CGGAGGGAGTATGTTTAAATACGAAT 59.073 38.462 0.00 0.00 37.96 3.34
333 334 6.127366 ACGGAGGGAGTATGTTTAAATACGAA 60.127 38.462 0.00 0.00 37.96 3.85
334 335 5.360714 ACGGAGGGAGTATGTTTAAATACGA 59.639 40.000 0.00 0.00 37.96 3.43
335 336 5.594926 ACGGAGGGAGTATGTTTAAATACG 58.405 41.667 0.00 0.00 37.96 3.06
336 337 7.550196 TGAAACGGAGGGAGTATGTTTAAATAC 59.450 37.037 0.00 0.00 33.27 1.89
337 338 7.550196 GTGAAACGGAGGGAGTATGTTTAAATA 59.450 37.037 0.00 0.00 33.27 1.40
338 339 6.373495 GTGAAACGGAGGGAGTATGTTTAAAT 59.627 38.462 0.00 0.00 33.27 1.40
339 340 5.702209 GTGAAACGGAGGGAGTATGTTTAAA 59.298 40.000 0.00 0.00 33.27 1.52
340 341 5.221682 TGTGAAACGGAGGGAGTATGTTTAA 60.222 40.000 0.00 0.00 42.39 1.52
341 342 4.283978 TGTGAAACGGAGGGAGTATGTTTA 59.716 41.667 0.00 0.00 42.39 2.01
342 343 3.071892 TGTGAAACGGAGGGAGTATGTTT 59.928 43.478 0.00 0.00 42.39 2.83
343 344 2.635915 TGTGAAACGGAGGGAGTATGTT 59.364 45.455 0.00 0.00 42.39 2.71
344 345 2.253610 TGTGAAACGGAGGGAGTATGT 58.746 47.619 0.00 0.00 42.39 2.29
345 346 3.328382 TTGTGAAACGGAGGGAGTATG 57.672 47.619 0.00 0.00 42.39 2.39
346 347 4.468510 TGTATTGTGAAACGGAGGGAGTAT 59.531 41.667 0.00 0.00 42.39 2.12
347 348 3.833650 TGTATTGTGAAACGGAGGGAGTA 59.166 43.478 0.00 0.00 42.39 2.59
348 349 2.635915 TGTATTGTGAAACGGAGGGAGT 59.364 45.455 0.00 0.00 42.39 3.85
349 350 3.328382 TGTATTGTGAAACGGAGGGAG 57.672 47.619 0.00 0.00 42.39 4.30
350 351 3.605634 CATGTATTGTGAAACGGAGGGA 58.394 45.455 0.00 0.00 42.39 4.20
351 352 2.097466 GCATGTATTGTGAAACGGAGGG 59.903 50.000 0.00 0.00 42.39 4.30
352 353 2.097466 GGCATGTATTGTGAAACGGAGG 59.903 50.000 0.00 0.00 42.39 4.30
353 354 3.009723 AGGCATGTATTGTGAAACGGAG 58.990 45.455 0.00 0.00 42.39 4.63
354 355 3.066291 AGGCATGTATTGTGAAACGGA 57.934 42.857 0.00 0.00 42.39 4.69
355 356 3.440173 AGAAGGCATGTATTGTGAAACGG 59.560 43.478 0.00 0.00 42.39 4.44
356 357 4.685169 AGAAGGCATGTATTGTGAAACG 57.315 40.909 0.00 0.00 42.39 3.60
440 441 8.079809 CCGTTCCAAAATACTTGACTTACATTT 58.920 33.333 0.00 0.00 0.00 2.32
441 442 7.446013 TCCGTTCCAAAATACTTGACTTACATT 59.554 33.333 0.00 0.00 0.00 2.71
442 443 6.938030 TCCGTTCCAAAATACTTGACTTACAT 59.062 34.615 0.00 0.00 0.00 2.29
443 444 6.289834 TCCGTTCCAAAATACTTGACTTACA 58.710 36.000 0.00 0.00 0.00 2.41
444 445 6.790285 TCCGTTCCAAAATACTTGACTTAC 57.210 37.500 0.00 0.00 0.00 2.34
445 446 6.428771 CCTTCCGTTCCAAAATACTTGACTTA 59.571 38.462 0.00 0.00 0.00 2.24
446 447 5.240844 CCTTCCGTTCCAAAATACTTGACTT 59.759 40.000 0.00 0.00 0.00 3.01
447 448 4.760204 CCTTCCGTTCCAAAATACTTGACT 59.240 41.667 0.00 0.00 0.00 3.41
448 449 4.758165 TCCTTCCGTTCCAAAATACTTGAC 59.242 41.667 0.00 0.00 0.00 3.18
449 450 4.975631 TCCTTCCGTTCCAAAATACTTGA 58.024 39.130 0.00 0.00 0.00 3.02
450 451 5.699097 TTCCTTCCGTTCCAAAATACTTG 57.301 39.130 0.00 0.00 0.00 3.16
451 452 7.173032 ACTATTCCTTCCGTTCCAAAATACTT 58.827 34.615 0.00 0.00 0.00 2.24
452 453 6.718294 ACTATTCCTTCCGTTCCAAAATACT 58.282 36.000 0.00 0.00 0.00 2.12
453 454 6.997239 ACTATTCCTTCCGTTCCAAAATAC 57.003 37.500 0.00 0.00 0.00 1.89
454 455 8.411991 AAAACTATTCCTTCCGTTCCAAAATA 57.588 30.769 0.00 0.00 0.00 1.40
455 456 6.911250 AAACTATTCCTTCCGTTCCAAAAT 57.089 33.333 0.00 0.00 0.00 1.82
456 457 6.718522 AAAACTATTCCTTCCGTTCCAAAA 57.281 33.333 0.00 0.00 0.00 2.44
457 458 6.718522 AAAAACTATTCCTTCCGTTCCAAA 57.281 33.333 0.00 0.00 0.00 3.28
458 459 7.820578 TTAAAAACTATTCCTTCCGTTCCAA 57.179 32.000 0.00 0.00 0.00 3.53
459 460 7.666388 TCATTAAAAACTATTCCTTCCGTTCCA 59.334 33.333 0.00 0.00 0.00 3.53
460 461 8.047413 TCATTAAAAACTATTCCTTCCGTTCC 57.953 34.615 0.00 0.00 0.00 3.62
491 492 8.549548 CAAAATGTTCATGCATGTCACTAAAAA 58.450 29.630 25.43 7.67 0.00 1.94
492 493 7.710044 ACAAAATGTTCATGCATGTCACTAAAA 59.290 29.630 25.43 8.38 0.00 1.52
493 494 7.208777 ACAAAATGTTCATGCATGTCACTAAA 58.791 30.769 25.43 9.24 0.00 1.85
494 495 6.747125 ACAAAATGTTCATGCATGTCACTAA 58.253 32.000 25.43 9.97 0.00 2.24
495 496 6.330004 ACAAAATGTTCATGCATGTCACTA 57.670 33.333 25.43 13.87 0.00 2.74
496 497 5.204409 ACAAAATGTTCATGCATGTCACT 57.796 34.783 25.43 13.44 0.00 3.41
497 498 5.910637 AACAAAATGTTCATGCATGTCAC 57.089 34.783 25.43 21.75 35.27 3.67
498 499 6.747125 ACTAACAAAATGTTCATGCATGTCA 58.253 32.000 25.43 23.31 40.22 3.58
499 500 7.642071 AACTAACAAAATGTTCATGCATGTC 57.358 32.000 25.43 19.05 40.22 3.06
500 501 9.539825 TTTAACTAACAAAATGTTCATGCATGT 57.460 25.926 25.43 4.01 40.22 3.21
523 524 9.197694 CCGTGTCAAATTTTAACCATCAATTTA 57.802 29.630 0.00 0.00 30.60 1.40
524 525 7.928706 TCCGTGTCAAATTTTAACCATCAATTT 59.071 29.630 0.00 0.00 31.62 1.82
525 526 7.437748 TCCGTGTCAAATTTTAACCATCAATT 58.562 30.769 0.00 0.00 0.00 2.32
526 527 6.987386 TCCGTGTCAAATTTTAACCATCAAT 58.013 32.000 0.00 0.00 0.00 2.57
527 528 6.392625 TCCGTGTCAAATTTTAACCATCAA 57.607 33.333 0.00 0.00 0.00 2.57
528 529 6.582677 ATCCGTGTCAAATTTTAACCATCA 57.417 33.333 0.00 0.00 0.00 3.07
529 530 8.024285 TGTAATCCGTGTCAAATTTTAACCATC 58.976 33.333 0.00 0.00 0.00 3.51
530 531 7.887381 TGTAATCCGTGTCAAATTTTAACCAT 58.113 30.769 0.00 0.00 0.00 3.55
531 532 7.273320 TGTAATCCGTGTCAAATTTTAACCA 57.727 32.000 0.00 0.00 0.00 3.67
532 533 8.643752 CATTGTAATCCGTGTCAAATTTTAACC 58.356 33.333 0.00 0.00 0.00 2.85
533 534 8.643752 CCATTGTAATCCGTGTCAAATTTTAAC 58.356 33.333 0.00 0.00 0.00 2.01
534 535 8.577296 TCCATTGTAATCCGTGTCAAATTTTAA 58.423 29.630 0.00 0.00 0.00 1.52
535 536 8.112016 TCCATTGTAATCCGTGTCAAATTTTA 57.888 30.769 0.00 0.00 0.00 1.52
536 537 6.987386 TCCATTGTAATCCGTGTCAAATTTT 58.013 32.000 0.00 0.00 0.00 1.82
537 538 6.582677 TCCATTGTAATCCGTGTCAAATTT 57.417 33.333 0.00 0.00 0.00 1.82
538 539 6.582677 TTCCATTGTAATCCGTGTCAAATT 57.417 33.333 0.00 0.00 0.00 1.82
539 540 6.015856 TGTTTCCATTGTAATCCGTGTCAAAT 60.016 34.615 0.00 0.00 0.00 2.32
540 541 5.299531 TGTTTCCATTGTAATCCGTGTCAAA 59.700 36.000 0.00 0.00 0.00 2.69
541 542 4.822350 TGTTTCCATTGTAATCCGTGTCAA 59.178 37.500 0.00 0.00 0.00 3.18
542 543 4.390264 TGTTTCCATTGTAATCCGTGTCA 58.610 39.130 0.00 0.00 0.00 3.58
543 544 5.365403 TTGTTTCCATTGTAATCCGTGTC 57.635 39.130 0.00 0.00 0.00 3.67
544 545 5.975693 ATTGTTTCCATTGTAATCCGTGT 57.024 34.783 0.00 0.00 0.00 4.49
545 546 7.274686 GGTTTATTGTTTCCATTGTAATCCGTG 59.725 37.037 0.00 0.00 0.00 4.94
546 547 7.039644 TGGTTTATTGTTTCCATTGTAATCCGT 60.040 33.333 0.00 0.00 0.00 4.69
547 548 7.316640 TGGTTTATTGTTTCCATTGTAATCCG 58.683 34.615 0.00 0.00 0.00 4.18
548 549 7.763985 CCTGGTTTATTGTTTCCATTGTAATCC 59.236 37.037 0.00 0.00 0.00 3.01
549 550 8.527810 TCCTGGTTTATTGTTTCCATTGTAATC 58.472 33.333 0.00 0.00 0.00 1.75
550 551 8.311109 GTCCTGGTTTATTGTTTCCATTGTAAT 58.689 33.333 0.00 0.00 0.00 1.89
551 552 7.522399 CGTCCTGGTTTATTGTTTCCATTGTAA 60.522 37.037 0.00 0.00 0.00 2.41
552 553 6.072397 CGTCCTGGTTTATTGTTTCCATTGTA 60.072 38.462 0.00 0.00 0.00 2.41
553 554 5.278758 CGTCCTGGTTTATTGTTTCCATTGT 60.279 40.000 0.00 0.00 0.00 2.71
554 555 5.160641 CGTCCTGGTTTATTGTTTCCATTG 58.839 41.667 0.00 0.00 0.00 2.82
555 556 4.219725 CCGTCCTGGTTTATTGTTTCCATT 59.780 41.667 0.00 0.00 0.00 3.16
556 557 3.761752 CCGTCCTGGTTTATTGTTTCCAT 59.238 43.478 0.00 0.00 0.00 3.41
557 558 3.150767 CCGTCCTGGTTTATTGTTTCCA 58.849 45.455 0.00 0.00 0.00 3.53
558 559 3.414269 TCCGTCCTGGTTTATTGTTTCC 58.586 45.455 0.00 0.00 39.52 3.13
559 560 4.457949 ACATCCGTCCTGGTTTATTGTTTC 59.542 41.667 0.00 0.00 39.52 2.78
560 561 4.403734 ACATCCGTCCTGGTTTATTGTTT 58.596 39.130 0.00 0.00 39.52 2.83
561 562 4.028993 ACATCCGTCCTGGTTTATTGTT 57.971 40.909 0.00 0.00 39.52 2.83
562 563 3.713826 ACATCCGTCCTGGTTTATTGT 57.286 42.857 0.00 0.00 39.52 2.71
563 564 4.766375 AGTACATCCGTCCTGGTTTATTG 58.234 43.478 0.00 0.00 39.52 1.90
564 565 5.659971 ACTAGTACATCCGTCCTGGTTTATT 59.340 40.000 0.00 0.00 39.52 1.40
565 566 5.206587 ACTAGTACATCCGTCCTGGTTTAT 58.793 41.667 0.00 0.00 39.52 1.40
566 567 4.603131 ACTAGTACATCCGTCCTGGTTTA 58.397 43.478 0.00 0.00 39.52 2.01
567 568 3.438183 ACTAGTACATCCGTCCTGGTTT 58.562 45.455 0.00 0.00 39.52 3.27
568 569 3.097342 ACTAGTACATCCGTCCTGGTT 57.903 47.619 0.00 0.00 39.52 3.67
569 570 2.822707 ACTAGTACATCCGTCCTGGT 57.177 50.000 0.00 0.00 39.52 4.00
570 571 3.818180 ACTACTAGTACATCCGTCCTGG 58.182 50.000 0.00 0.00 40.09 4.45
571 572 5.831702 AAACTACTAGTACATCCGTCCTG 57.168 43.478 0.00 0.00 0.00 3.86
572 573 6.657875 AGTAAACTACTAGTACATCCGTCCT 58.342 40.000 0.00 0.00 37.23 3.85
573 574 6.934048 AGTAAACTACTAGTACATCCGTCC 57.066 41.667 0.00 0.00 37.23 4.79
574 575 9.103861 AGTTAGTAAACTACTAGTACATCCGTC 57.896 37.037 0.00 0.00 44.26 4.79
575 576 9.454859 AAGTTAGTAAACTACTAGTACATCCGT 57.545 33.333 0.00 0.00 45.37 4.69
600 601 8.770828 GCGCTTACATGATTATTCTAGGTTTAA 58.229 33.333 0.00 0.00 0.00 1.52
601 602 7.386848 GGCGCTTACATGATTATTCTAGGTTTA 59.613 37.037 7.64 0.00 0.00 2.01
602 603 6.204882 GGCGCTTACATGATTATTCTAGGTTT 59.795 38.462 7.64 0.00 0.00 3.27
603 604 5.701290 GGCGCTTACATGATTATTCTAGGTT 59.299 40.000 7.64 0.00 0.00 3.50
604 605 5.238583 GGCGCTTACATGATTATTCTAGGT 58.761 41.667 7.64 0.00 0.00 3.08
605 606 4.631813 GGGCGCTTACATGATTATTCTAGG 59.368 45.833 7.64 0.00 0.00 3.02
606 607 5.482908 AGGGCGCTTACATGATTATTCTAG 58.517 41.667 7.64 0.00 0.00 2.43
607 608 5.483685 AGGGCGCTTACATGATTATTCTA 57.516 39.130 7.64 0.00 0.00 2.10
608 609 4.357918 AGGGCGCTTACATGATTATTCT 57.642 40.909 7.64 0.00 0.00 2.40
609 610 5.120830 CACTAGGGCGCTTACATGATTATTC 59.879 44.000 9.23 0.00 0.00 1.75
610 611 4.997395 CACTAGGGCGCTTACATGATTATT 59.003 41.667 9.23 0.00 0.00 1.40
611 612 4.283467 TCACTAGGGCGCTTACATGATTAT 59.717 41.667 9.23 0.00 0.00 1.28
612 613 3.639561 TCACTAGGGCGCTTACATGATTA 59.360 43.478 9.23 0.00 0.00 1.75
613 614 2.434336 TCACTAGGGCGCTTACATGATT 59.566 45.455 9.23 0.00 0.00 2.57
614 615 2.039418 TCACTAGGGCGCTTACATGAT 58.961 47.619 9.23 0.00 0.00 2.45
615 616 1.480789 TCACTAGGGCGCTTACATGA 58.519 50.000 9.23 5.28 0.00 3.07
616 617 2.408050 GATCACTAGGGCGCTTACATG 58.592 52.381 9.23 2.83 0.00 3.21
617 618 1.000163 CGATCACTAGGGCGCTTACAT 60.000 52.381 9.23 0.00 0.00 2.29
618 619 0.384309 CGATCACTAGGGCGCTTACA 59.616 55.000 9.23 0.00 0.00 2.41
619 620 0.666913 TCGATCACTAGGGCGCTTAC 59.333 55.000 9.23 0.00 0.00 2.34
620 621 0.666913 GTCGATCACTAGGGCGCTTA 59.333 55.000 9.23 0.00 0.00 3.09
621 622 1.320344 TGTCGATCACTAGGGCGCTT 61.320 55.000 9.23 0.00 0.00 4.68
622 623 1.109920 ATGTCGATCACTAGGGCGCT 61.110 55.000 7.64 8.86 0.00 5.92
623 624 0.596577 TATGTCGATCACTAGGGCGC 59.403 55.000 0.00 0.00 0.00 6.53
624 625 1.607148 TGTATGTCGATCACTAGGGCG 59.393 52.381 0.00 0.00 0.00 6.13
625 626 2.604855 CGTGTATGTCGATCACTAGGGC 60.605 54.545 0.00 0.00 0.00 5.19
626 627 2.617308 ACGTGTATGTCGATCACTAGGG 59.383 50.000 0.00 0.00 0.00 3.53
627 628 3.965292 ACGTGTATGTCGATCACTAGG 57.035 47.619 0.00 0.00 0.00 3.02
628 629 6.028368 AGAAAACGTGTATGTCGATCACTAG 58.972 40.000 0.00 0.00 0.00 2.57
629 630 5.946298 AGAAAACGTGTATGTCGATCACTA 58.054 37.500 0.00 0.00 0.00 2.74
630 631 4.806330 AGAAAACGTGTATGTCGATCACT 58.194 39.130 0.00 0.00 0.00 3.41
631 632 6.807708 ATAGAAAACGTGTATGTCGATCAC 57.192 37.500 0.00 0.00 0.00 3.06
632 633 7.166970 GCTAATAGAAAACGTGTATGTCGATCA 59.833 37.037 0.00 0.00 0.00 2.92
633 634 7.491683 GCTAATAGAAAACGTGTATGTCGATC 58.508 38.462 0.00 0.00 0.00 3.69
634 635 6.141844 CGCTAATAGAAAACGTGTATGTCGAT 59.858 38.462 0.00 0.00 0.00 3.59
635 636 5.453266 CGCTAATAGAAAACGTGTATGTCGA 59.547 40.000 0.00 0.00 0.00 4.20
636 637 5.644122 CGCTAATAGAAAACGTGTATGTCG 58.356 41.667 0.00 0.00 0.00 4.35
637 638 5.421203 GCGCTAATAGAAAACGTGTATGTC 58.579 41.667 0.00 0.00 0.00 3.06
638 639 4.269363 GGCGCTAATAGAAAACGTGTATGT 59.731 41.667 7.64 0.00 0.00 2.29
639 640 4.318546 GGGCGCTAATAGAAAACGTGTATG 60.319 45.833 7.64 0.00 0.00 2.39
640 641 3.805971 GGGCGCTAATAGAAAACGTGTAT 59.194 43.478 7.64 0.00 0.00 2.29
641 642 3.119029 AGGGCGCTAATAGAAAACGTGTA 60.119 43.478 7.64 0.00 0.00 2.90
642 643 2.004733 GGGCGCTAATAGAAAACGTGT 58.995 47.619 7.64 0.00 0.00 4.49
643 644 2.277084 AGGGCGCTAATAGAAAACGTG 58.723 47.619 7.64 0.00 0.00 4.49
644 645 2.685850 AGGGCGCTAATAGAAAACGT 57.314 45.000 7.64 0.00 0.00 3.99
645 646 2.798847 GGTAGGGCGCTAATAGAAAACG 59.201 50.000 12.67 0.00 0.00 3.60
646 647 3.558829 GTGGTAGGGCGCTAATAGAAAAC 59.441 47.826 12.67 0.00 0.00 2.43
647 648 3.198200 TGTGGTAGGGCGCTAATAGAAAA 59.802 43.478 12.67 0.00 0.00 2.29
648 649 2.767394 TGTGGTAGGGCGCTAATAGAAA 59.233 45.455 12.67 0.00 0.00 2.52
649 650 2.390696 TGTGGTAGGGCGCTAATAGAA 58.609 47.619 12.67 0.00 0.00 2.10
650 651 2.076207 TGTGGTAGGGCGCTAATAGA 57.924 50.000 12.67 0.34 0.00 1.98
651 652 3.676324 GCTATGTGGTAGGGCGCTAATAG 60.676 52.174 12.67 15.42 0.00 1.73
652 653 2.232941 GCTATGTGGTAGGGCGCTAATA 59.767 50.000 12.67 5.98 0.00 0.98
653 654 1.002087 GCTATGTGGTAGGGCGCTAAT 59.998 52.381 12.67 5.07 0.00 1.73
654 655 0.391597 GCTATGTGGTAGGGCGCTAA 59.608 55.000 12.67 0.00 0.00 3.09
655 656 1.802337 CGCTATGTGGTAGGGCGCTA 61.802 60.000 7.64 6.37 39.42 4.26
656 657 2.822399 GCTATGTGGTAGGGCGCT 59.178 61.111 7.64 8.86 0.00 5.92
657 658 2.661866 CGCTATGTGGTAGGGCGC 60.662 66.667 0.00 0.00 39.42 6.53
659 660 4.438346 CACGCTATGTGGTAGGGC 57.562 61.111 0.00 0.00 44.78 5.19
667 668 2.494918 GGGAGTCGCACGCTATGT 59.505 61.111 1.64 0.00 0.00 2.29
668 669 2.655364 CGGGAGTCGCACGCTATG 60.655 66.667 8.06 0.00 36.12 2.23
680 681 1.109920 ATGGGAGTCGATGACGGGAG 61.110 60.000 0.00 0.00 37.67 4.30
681 682 1.076265 ATGGGAGTCGATGACGGGA 60.076 57.895 0.00 0.00 37.67 5.14
682 683 1.068083 CATGGGAGTCGATGACGGG 59.932 63.158 0.00 0.00 37.67 5.28
683 684 1.068083 CCATGGGAGTCGATGACGG 59.932 63.158 2.85 0.00 37.67 4.79
746 747 2.129620 CATGCATGGGTGAATGGGG 58.870 57.895 19.40 0.00 37.68 4.96
757 758 0.183014 AGAAGGAGAGGCCATGCATG 59.817 55.000 20.19 20.19 40.02 4.06
758 759 0.473326 GAGAAGGAGAGGCCATGCAT 59.527 55.000 5.01 0.00 40.02 3.96
759 760 1.630126 GGAGAAGGAGAGGCCATGCA 61.630 60.000 5.01 0.00 40.02 3.96
760 761 1.148048 GGAGAAGGAGAGGCCATGC 59.852 63.158 5.01 0.00 40.02 4.06
974 981 3.853330 CGCAGCCAACACGATCCG 61.853 66.667 0.00 0.00 0.00 4.18
1223 1230 2.076863 GTTGAGTGTGTGTATCCCTGC 58.923 52.381 0.00 0.00 0.00 4.85
1231 1238 1.964223 AGAGGATCGTTGAGTGTGTGT 59.036 47.619 0.00 0.00 42.67 3.72
1232 1239 2.230025 AGAGAGGATCGTTGAGTGTGTG 59.770 50.000 0.00 0.00 42.67 3.82
1233 1240 2.520069 AGAGAGGATCGTTGAGTGTGT 58.480 47.619 0.00 0.00 42.67 3.72
1234 1241 4.703645 TTAGAGAGGATCGTTGAGTGTG 57.296 45.455 0.00 0.00 42.67 3.82
1344 1353 7.179338 AAGAGTAGCTTAAACTGATCTTCAGGA 59.821 37.037 9.18 0.00 41.01 3.86
1345 1354 7.327214 AAGAGTAGCTTAAACTGATCTTCAGG 58.673 38.462 9.18 0.00 41.01 3.86
1391 1406 5.866092 CCTTTTATTCTTTTTGCCTGAGAGC 59.134 40.000 0.00 0.00 0.00 4.09
1394 1409 8.141268 TGTTACCTTTTATTCTTTTTGCCTGAG 58.859 33.333 0.00 0.00 0.00 3.35
1525 1540 2.035632 CCAGGTTTGGGCAACTTACAA 58.964 47.619 0.00 0.00 41.05 2.41
1582 1597 6.931840 AGAGTTGAGAAGGACACTTTTGATAC 59.068 38.462 0.00 0.00 36.97 2.24
1668 1684 8.907222 AAGTTTGCCACAAAATAAATTCAGAT 57.093 26.923 0.00 0.00 0.00 2.90
1709 1725 5.775686 TCAATGATGAAACTTTCCAAGCAG 58.224 37.500 0.00 0.00 30.99 4.24
1748 1764 4.938080 ACATTTGATTTGTTTGCCACGTA 58.062 34.783 0.00 0.00 0.00 3.57
1813 1831 3.991773 GTGCTCGGTGTACAGTAAAATCA 59.008 43.478 0.00 0.00 0.00 2.57
1836 1854 1.064208 TCTGAGTTCGAGCTCATACGC 59.936 52.381 28.84 12.58 43.61 4.42
2146 2164 9.906660 CAAATAATGGAGCAAAACTACAAGTAA 57.093 29.630 0.00 0.00 44.54 2.24
2240 2258 7.562821 GGAGGGAGTAGTATTAAACAAGGTAGA 59.437 40.741 0.00 0.00 0.00 2.59
2309 2328 7.968956 TCTGATCCGTAATATAAGAGCGATTTC 59.031 37.037 0.00 0.00 0.00 2.17
2424 2443 5.066893 GCAGATCACCAAGCTTTCATATCAA 59.933 40.000 0.00 0.00 0.00 2.57
2493 2512 5.189736 TCTTGGCTCAACATACTTCCTGTAT 59.810 40.000 0.00 0.00 42.18 2.29
2947 2966 5.418209 TGTTGACCTAGAGCTACTCCTTAAC 59.582 44.000 0.00 0.00 0.00 2.01
3171 3192 6.460781 ACATCAAGTAACGAATTAGACACCA 58.539 36.000 0.00 0.00 0.00 4.17
3265 3286 3.897141 TGCACCATATAAGTCGGTCAA 57.103 42.857 0.00 0.00 0.00 3.18
3345 3366 2.702898 TCAACGATGCAAATGTGGTG 57.297 45.000 0.00 0.00 0.00 4.17
3373 3394 7.707624 AGATCAATGCAAATGAAGTTCCTTA 57.292 32.000 9.32 0.00 0.00 2.69
3406 3427 7.324178 AGTTGTTCTACTAATTAGCACAGAGG 58.676 38.462 12.54 0.00 35.65 3.69
3463 3484 5.864986 AGTTACCTTTTATGAAATGACGCG 58.135 37.500 3.53 3.53 0.00 6.01
3620 3643 7.884257 TCTTTCAAACATTGAGCACATATCAA 58.116 30.769 0.00 0.00 41.38 2.57
3764 3788 7.429633 TGTGAAGTTTATAAACACAACCATGG 58.570 34.615 26.06 11.19 41.30 3.66
3912 3936 1.376037 GTAGCCTGCAGGTCACCAC 60.376 63.158 32.81 18.86 37.57 4.16
3922 3946 3.503748 AGATGTTCAAAACTGTAGCCTGC 59.496 43.478 0.00 0.00 0.00 4.85
4350 4375 2.698855 AACAGGTGCTATCTTCGCAT 57.301 45.000 0.00 0.00 39.89 4.73
4642 4667 6.708054 AGCATAGACCAAATATAGCTCAACAC 59.292 38.462 0.00 0.00 0.00 3.32
4949 4976 4.048504 GCAATGGACACACAAAAGGTAAC 58.951 43.478 0.00 0.00 0.00 2.50
5186 5214 6.247676 TGCATATGTTAGGCCATACATTCAT 58.752 36.000 22.83 11.97 36.46 2.57
5635 5663 5.237344 GCAGAAGAGCTCAAACAAAAGTAGA 59.763 40.000 17.77 0.00 0.00 2.59
5807 5835 9.102757 CACTGTACTGATAAAGTCAAGCATAAT 57.897 33.333 6.77 0.00 40.56 1.28
5987 6015 4.854173 TCATAAGCCATAACTCCAGCAAA 58.146 39.130 0.00 0.00 0.00 3.68
6088 6120 1.817099 CATCTCTGCGAGTTGGCCC 60.817 63.158 0.00 0.00 0.00 5.80
6326 6359 3.718956 CAGAAGGGGGTCTCTATGGAAAT 59.281 47.826 0.00 0.00 0.00 2.17
6337 6370 2.403561 AGATAAGAGCAGAAGGGGGTC 58.596 52.381 0.00 0.00 0.00 4.46
6348 6381 6.816140 GGGTGATCAAAGCTATAGATAAGAGC 59.184 42.308 3.21 2.52 36.42 4.09
7159 7330 6.538742 CACTCGTATCCAACAACCATTCTATT 59.461 38.462 0.00 0.00 0.00 1.73
7189 7360 7.596494 ACTATTTTGAGTCACAAATGGACATG 58.404 34.615 20.34 0.00 45.99 3.21
7204 7375 7.970614 GGAACTTCAGCCATTTACTATTTTGAG 59.029 37.037 0.00 0.00 0.00 3.02
7220 7391 2.627699 TGGAAAACCATGGAACTTCAGC 59.372 45.455 21.47 6.63 0.00 4.26
7297 7469 8.994170 AGAAGTAGAACTTGATTCACTTAAAGC 58.006 33.333 0.00 0.00 38.80 3.51
7349 7521 2.559440 GATTTTGTGCTGGTTTTGGCA 58.441 42.857 0.00 0.00 36.01 4.92
7462 7634 2.041620 CCCAAGGGTTCAGATGGAAAGA 59.958 50.000 0.00 0.00 37.23 2.52
7499 7672 7.445402 AGAGCAAATAATATATGTGACCGCTTT 59.555 33.333 0.00 0.00 0.00 3.51
7505 7678 9.144747 ACGATCAGAGCAAATAATATATGTGAC 57.855 33.333 0.00 0.00 0.00 3.67
7514 7687 5.647658 TGTGGAAACGATCAGAGCAAATAAT 59.352 36.000 0.00 0.00 0.00 1.28
7862 8041 9.642343 ACTATGAGACATTATAGGTCTACACAA 57.358 33.333 8.60 3.16 45.21 3.33
7870 8049 8.893727 GTTGCAAAACTATGAGACATTATAGGT 58.106 33.333 0.00 0.00 32.45 3.08
7890 8069 3.454082 AGGATTTGGTGAAAAGGTTGCAA 59.546 39.130 0.00 0.00 0.00 4.08
8090 8269 1.460504 ACTCCACAATCGCTCGTCTA 58.539 50.000 0.00 0.00 0.00 2.59
8420 8617 4.590647 TGCAACCTCAAAAATTATGGTGGA 59.409 37.500 0.00 0.00 0.00 4.02
8644 9845 1.227089 CATCGGGAAGAGCGTCCAG 60.227 63.158 4.89 0.86 39.70 3.86
8738 9948 8.574737 GGAGTAGATACACGATGTAACCTATTT 58.425 37.037 0.00 0.00 36.31 1.40
8786 10001 5.887035 GGTATGTTGTAGTGTCTAGGACTCT 59.113 44.000 7.29 7.29 39.30 3.24
8787 10002 5.067544 GGGTATGTTGTAGTGTCTAGGACTC 59.932 48.000 0.00 0.00 33.15 3.36
8791 10006 4.710375 ACAGGGTATGTTGTAGTGTCTAGG 59.290 45.833 0.00 0.00 39.96 3.02
8792 10007 5.652891 AGACAGGGTATGTTGTAGTGTCTAG 59.347 44.000 0.32 0.00 44.17 2.43
8794 10009 4.417437 AGACAGGGTATGTTGTAGTGTCT 58.583 43.478 0.00 0.00 44.17 3.41
8874 10119 8.194104 CGAATCAAAATTGTTGGGGTATATTCA 58.806 33.333 0.00 0.00 0.00 2.57
8950 13463 0.250467 GGAGTCTGGAAGCAGCAACA 60.250 55.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.