Multiple sequence alignment - TraesCS3B01G606400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G606400 chr3B 100.000 3191 0 0 1 3191 825538090 825541280 0.000000e+00 5893.0
1 TraesCS3B01G606400 chr3B 94.381 1940 98 5 477 2405 779689464 779687525 0.000000e+00 2968.0
2 TraesCS3B01G606400 chr3B 84.611 1748 228 18 477 2210 825869975 825868255 0.000000e+00 1700.0
3 TraesCS3B01G606400 chr3B 84.436 1542 213 20 669 2204 788514541 788516061 0.000000e+00 1493.0
4 TraesCS3B01G606400 chr3B 85.861 1365 180 8 838 2195 825859827 825858469 0.000000e+00 1439.0
5 TraesCS3B01G606400 chr3B 84.036 1328 182 14 844 2168 788555299 788556599 0.000000e+00 1251.0
6 TraesCS3B01G606400 chr3B 87.943 423 18 15 95 486 521538791 521539211 4.820000e-128 468.0
7 TraesCS3B01G606400 chr3B 95.238 84 4 0 20 103 779689559 779689476 2.000000e-27 134.0
8 TraesCS3B01G606400 chrUn 95.374 2724 95 14 493 3191 209288805 209286088 0.000000e+00 4303.0
9 TraesCS3B01G606400 chrUn 85.472 1356 188 6 844 2195 37102673 37104023 0.000000e+00 1404.0
10 TraesCS3B01G606400 chrUn 94.845 97 5 0 1 97 209288914 209288818 5.510000e-33 152.0
11 TraesCS3B01G606400 chr7B 95.374 2724 95 14 493 3191 642248938 642246221 0.000000e+00 4303.0
12 TraesCS3B01G606400 chr7B 89.024 410 15 7 98 477 728874296 728873887 6.190000e-132 481.0
13 TraesCS3B01G606400 chr7B 94.845 97 5 0 1 97 642249047 642248951 5.510000e-33 152.0
14 TraesCS3B01G606400 chr3D 94.066 1584 65 3 479 2060 614477677 614476121 0.000000e+00 2377.0
15 TraesCS3B01G606400 chr3D 85.559 1752 218 23 484 2224 615475819 615474092 0.000000e+00 1801.0
16 TraesCS3B01G606400 chr3D 83.473 714 90 10 1103 1816 615468214 615467529 9.650000e-180 640.0
17 TraesCS3B01G606400 chr3D 85.766 274 33 4 838 1106 615469908 615469636 5.210000e-73 285.0
18 TraesCS3B01G606400 chr3A 83.910 578 83 6 1634 2204 749866816 749867390 7.780000e-151 544.0
19 TraesCS3B01G606400 chr3A 82.474 291 38 6 477 762 749866535 749866817 3.180000e-60 243.0
20 TraesCS3B01G606400 chr5B 91.582 392 20 5 98 476 653785569 653785960 2.180000e-146 529.0
21 TraesCS3B01G606400 chr4B 91.436 397 15 4 98 475 2485561 2485957 7.840000e-146 527.0
22 TraesCS3B01G606400 chr4B 88.670 406 18 8 98 475 162841279 162841684 1.340000e-128 470.0
23 TraesCS3B01G606400 chr4A 90.955 398 15 8 96 474 342373457 342373852 1.700000e-142 516.0
24 TraesCS3B01G606400 chr6B 89.024 410 16 9 98 481 122735634 122736040 6.190000e-132 481.0
25 TraesCS3B01G606400 chr6B 88.264 409 17 8 98 475 157559020 157558612 8.070000e-126 460.0
26 TraesCS3B01G606400 chr6B 89.943 348 20 7 142 476 62157514 62157859 4.890000e-118 435.0
27 TraesCS3B01G606400 chr6B 87.042 409 21 10 98 476 642994184 642994590 1.760000e-117 433.0
28 TraesCS3B01G606400 chr7A 88.406 414 16 6 95 476 622802242 622802655 1.340000e-128 470.0
29 TraesCS3B01G606400 chr7A 88.107 412 18 6 95 476 622829859 622830269 8.070000e-126 460.0
30 TraesCS3B01G606400 chr7A 78.462 260 48 7 2303 2560 651674013 651674266 2.550000e-36 163.0
31 TraesCS3B01G606400 chr7A 77.992 259 51 5 2303 2560 651644723 651644976 1.180000e-34 158.0
32 TraesCS3B01G606400 chr7A 79.012 162 27 7 2305 2465 58377336 58377491 1.570000e-18 104.0
33 TraesCS3B01G606400 chr7A 85.294 68 10 0 3124 3191 164653729 164653662 1.590000e-08 71.3
34 TraesCS3B01G606400 chr5A 88.747 391 28 8 103 479 688730316 688729928 6.230000e-127 464.0
35 TraesCS3B01G606400 chr5A 91.124 338 21 7 144 475 667034320 667034654 1.750000e-122 449.0
36 TraesCS3B01G606400 chr5A 81.481 135 18 7 2310 2443 40627572 40627444 1.570000e-18 104.0
37 TraesCS3B01G606400 chr1B 90.625 352 19 8 137 477 441855766 441855418 3.750000e-124 455.0
38 TraesCS3B01G606400 chr1B 91.489 329 22 5 142 466 639997638 639997964 6.280000e-122 448.0
39 TraesCS3B01G606400 chr2B 77.470 253 49 8 2311 2561 707784219 707783973 9.230000e-31 145.0
40 TraesCS3B01G606400 chr6A 72.932 266 64 7 2308 2571 1838370 1838111 5.670000e-13 86.1
41 TraesCS3B01G606400 chr7D 88.235 68 8 0 3124 3191 163362859 163362792 7.340000e-12 82.4
42 TraesCS3B01G606400 chr2A 100.000 28 0 0 3164 3191 143527417 143527390 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G606400 chr3B 825538090 825541280 3190 False 5893.0 5893 100.0000 1 3191 1 chr3B.!!$F4 3190
1 TraesCS3B01G606400 chr3B 825868255 825869975 1720 True 1700.0 1700 84.6110 477 2210 1 chr3B.!!$R2 1733
2 TraesCS3B01G606400 chr3B 779687525 779689559 2034 True 1551.0 2968 94.8095 20 2405 2 chr3B.!!$R3 2385
3 TraesCS3B01G606400 chr3B 788514541 788516061 1520 False 1493.0 1493 84.4360 669 2204 1 chr3B.!!$F2 1535
4 TraesCS3B01G606400 chr3B 825858469 825859827 1358 True 1439.0 1439 85.8610 838 2195 1 chr3B.!!$R1 1357
5 TraesCS3B01G606400 chr3B 788555299 788556599 1300 False 1251.0 1251 84.0360 844 2168 1 chr3B.!!$F3 1324
6 TraesCS3B01G606400 chrUn 209286088 209288914 2826 True 2227.5 4303 95.1095 1 3191 2 chrUn.!!$R1 3190
7 TraesCS3B01G606400 chrUn 37102673 37104023 1350 False 1404.0 1404 85.4720 844 2195 1 chrUn.!!$F1 1351
8 TraesCS3B01G606400 chr7B 642246221 642249047 2826 True 2227.5 4303 95.1095 1 3191 2 chr7B.!!$R2 3190
9 TraesCS3B01G606400 chr3D 614476121 614477677 1556 True 2377.0 2377 94.0660 479 2060 1 chr3D.!!$R1 1581
10 TraesCS3B01G606400 chr3D 615474092 615475819 1727 True 1801.0 1801 85.5590 484 2224 1 chr3D.!!$R2 1740
11 TraesCS3B01G606400 chr3D 615467529 615469908 2379 True 462.5 640 84.6195 838 1816 2 chr3D.!!$R3 978
12 TraesCS3B01G606400 chr3A 749866535 749867390 855 False 393.5 544 83.1920 477 2204 2 chr3A.!!$F1 1727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 782 0.040204 CCCAAGAATGGTTCAGGCCT 59.96 55.0 0.0 0.0 46.01 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2701 4219 0.175302 CAAGCAGCCCACAAACACAA 59.825 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 3.223423 AGAACACAGACAGCACGATAG 57.777 47.619 0.00 0.00 46.19 2.08
99 100 2.929531 ACACAGACAGCACGATAGAG 57.070 50.000 0.00 0.00 41.38 2.43
103 104 2.159503 ACAGACAGCACGATAGAGAACG 60.160 50.000 0.00 0.00 41.38 3.95
104 105 1.402259 AGACAGCACGATAGAGAACGG 59.598 52.381 0.00 0.00 41.38 4.44
105 106 0.179134 ACAGCACGATAGAGAACGGC 60.179 55.000 0.00 0.00 41.38 5.68
106 107 1.064296 AGCACGATAGAGAACGGCG 59.936 57.895 4.80 4.80 41.38 6.46
107 108 1.226603 GCACGATAGAGAACGGCGT 60.227 57.895 6.77 6.77 41.38 5.68
109 110 1.625616 CACGATAGAGAACGGCGTTT 58.374 50.000 27.48 16.17 41.38 3.60
110 111 1.582502 CACGATAGAGAACGGCGTTTC 59.417 52.381 27.48 22.85 41.38 2.78
111 112 0.838229 CGATAGAGAACGGCGTTTCG 59.162 55.000 27.48 25.17 39.76 3.46
112 113 1.197910 GATAGAGAACGGCGTTTCGG 58.802 55.000 27.48 0.00 0.00 4.30
113 114 0.529378 ATAGAGAACGGCGTTTCGGT 59.471 50.000 27.48 13.98 0.00 4.69
114 115 0.387622 TAGAGAACGGCGTTTCGGTG 60.388 55.000 27.48 0.00 0.00 4.94
115 116 3.291167 GAGAACGGCGTTTCGGTGC 62.291 63.158 27.48 12.66 0.00 5.01
139 140 4.402851 GCATCTGCACCCAGTCAA 57.597 55.556 0.00 0.00 40.09 3.18
140 141 2.644887 GCATCTGCACCCAGTCAAA 58.355 52.632 0.00 0.00 40.09 2.69
141 142 0.961019 GCATCTGCACCCAGTCAAAA 59.039 50.000 0.00 0.00 40.09 2.44
142 143 1.340889 GCATCTGCACCCAGTCAAAAA 59.659 47.619 0.00 0.00 40.09 1.94
189 190 6.933514 AAATTGGGTGGTAGACAATTTGAT 57.066 33.333 12.20 0.00 46.84 2.57
190 191 5.920193 ATTGGGTGGTAGACAATTTGATG 57.080 39.130 2.79 0.00 31.21 3.07
191 192 3.088532 TGGGTGGTAGACAATTTGATGC 58.911 45.455 2.79 0.00 0.00 3.91
192 193 2.097466 GGGTGGTAGACAATTTGATGCG 59.903 50.000 2.79 0.00 0.00 4.73
193 194 2.747446 GGTGGTAGACAATTTGATGCGT 59.253 45.455 2.79 0.00 0.00 5.24
194 195 3.426159 GGTGGTAGACAATTTGATGCGTG 60.426 47.826 2.79 0.00 0.00 5.34
195 196 3.435327 GTGGTAGACAATTTGATGCGTGA 59.565 43.478 2.79 0.00 0.00 4.35
196 197 3.684305 TGGTAGACAATTTGATGCGTGAG 59.316 43.478 2.79 0.00 0.00 3.51
197 198 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
198 199 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
199 200 3.937814 AGACAATTTGATGCGTGAGGTA 58.062 40.909 2.79 0.00 0.00 3.08
200 201 4.517285 AGACAATTTGATGCGTGAGGTAT 58.483 39.130 2.79 0.00 0.00 2.73
201 202 4.333649 AGACAATTTGATGCGTGAGGTATG 59.666 41.667 2.79 0.00 0.00 2.39
202 203 3.181497 ACAATTTGATGCGTGAGGTATGC 60.181 43.478 2.79 0.00 41.83 3.14
203 204 2.401583 TTTGATGCGTGAGGTATGCT 57.598 45.000 0.00 0.00 41.99 3.79
204 205 1.939974 TTGATGCGTGAGGTATGCTC 58.060 50.000 0.00 0.00 41.99 4.26
205 206 0.104855 TGATGCGTGAGGTATGCTCC 59.895 55.000 0.00 0.00 41.99 4.70
206 207 0.104855 GATGCGTGAGGTATGCTCCA 59.895 55.000 0.00 0.00 41.99 3.86
207 208 0.541392 ATGCGTGAGGTATGCTCCAA 59.459 50.000 0.00 0.00 41.99 3.53
208 209 0.541392 TGCGTGAGGTATGCTCCAAT 59.459 50.000 0.00 0.00 41.99 3.16
209 210 1.065491 TGCGTGAGGTATGCTCCAATT 60.065 47.619 0.00 0.00 41.99 2.32
210 211 2.017049 GCGTGAGGTATGCTCCAATTT 58.983 47.619 0.00 0.00 38.31 1.82
211 212 2.423538 GCGTGAGGTATGCTCCAATTTT 59.576 45.455 0.00 0.00 38.31 1.82
212 213 3.487544 GCGTGAGGTATGCTCCAATTTTC 60.488 47.826 0.00 0.00 38.31 2.29
213 214 3.689161 CGTGAGGTATGCTCCAATTTTCA 59.311 43.478 0.00 0.00 0.00 2.69
214 215 4.155826 CGTGAGGTATGCTCCAATTTTCAA 59.844 41.667 0.00 0.00 0.00 2.69
215 216 5.335583 CGTGAGGTATGCTCCAATTTTCAAA 60.336 40.000 0.00 0.00 0.00 2.69
216 217 6.454795 GTGAGGTATGCTCCAATTTTCAAAA 58.545 36.000 0.00 0.00 0.00 2.44
217 218 6.366061 GTGAGGTATGCTCCAATTTTCAAAAC 59.634 38.462 0.00 0.00 0.00 2.43
218 219 6.041409 TGAGGTATGCTCCAATTTTCAAAACA 59.959 34.615 0.00 0.00 0.00 2.83
219 220 7.008021 AGGTATGCTCCAATTTTCAAAACAT 57.992 32.000 0.00 0.00 0.00 2.71
220 221 7.452562 AGGTATGCTCCAATTTTCAAAACATT 58.547 30.769 0.00 0.00 0.00 2.71
221 222 7.938490 AGGTATGCTCCAATTTTCAAAACATTT 59.062 29.630 0.00 0.00 0.00 2.32
222 223 8.016801 GGTATGCTCCAATTTTCAAAACATTTG 58.983 33.333 0.00 0.00 0.00 2.32
223 224 6.374565 TGCTCCAATTTTCAAAACATTTGG 57.625 33.333 7.23 7.23 35.93 3.28
224 225 6.118170 TGCTCCAATTTTCAAAACATTTGGA 58.882 32.000 13.46 13.46 40.08 3.53
225 226 6.038050 TGCTCCAATTTTCAAAACATTTGGAC 59.962 34.615 11.02 9.36 38.10 4.02
226 227 6.260714 GCTCCAATTTTCAAAACATTTGGACT 59.739 34.615 11.02 0.00 38.10 3.85
227 228 7.201723 GCTCCAATTTTCAAAACATTTGGACTT 60.202 33.333 11.02 0.00 38.10 3.01
228 229 8.207521 TCCAATTTTCAAAACATTTGGACTTC 57.792 30.769 11.02 0.00 38.10 3.01
229 230 8.046107 TCCAATTTTCAAAACATTTGGACTTCT 58.954 29.630 11.02 0.00 38.10 2.85
230 231 8.124199 CCAATTTTCAAAACATTTGGACTTCTG 58.876 33.333 7.67 0.00 36.55 3.02
231 232 8.667463 CAATTTTCAAAACATTTGGACTTCTGT 58.333 29.630 3.25 0.00 0.00 3.41
232 233 7.593875 TTTTCAAAACATTTGGACTTCTGTG 57.406 32.000 3.25 0.00 0.00 3.66
233 234 4.681744 TCAAAACATTTGGACTTCTGTGC 58.318 39.130 3.25 0.00 34.96 4.57
234 235 4.159321 TCAAAACATTTGGACTTCTGTGCA 59.841 37.500 3.25 0.00 42.73 4.57
235 236 3.996150 AACATTTGGACTTCTGTGCAG 57.004 42.857 0.00 0.00 44.96 4.41
236 237 1.610522 ACATTTGGACTTCTGTGCAGC 59.389 47.619 0.00 0.00 44.96 5.25
237 238 1.884579 CATTTGGACTTCTGTGCAGCT 59.115 47.619 0.00 0.00 44.96 4.24
238 239 1.597742 TTTGGACTTCTGTGCAGCTC 58.402 50.000 0.00 0.00 44.96 4.09
239 240 0.761187 TTGGACTTCTGTGCAGCTCT 59.239 50.000 0.00 0.00 44.96 4.09
240 241 0.319728 TGGACTTCTGTGCAGCTCTC 59.680 55.000 0.00 0.00 39.59 3.20
241 242 0.319728 GGACTTCTGTGCAGCTCTCA 59.680 55.000 0.00 0.00 34.50 3.27
242 243 1.672441 GGACTTCTGTGCAGCTCTCAG 60.672 57.143 0.00 0.28 37.58 3.35
243 244 0.320596 ACTTCTGTGCAGCTCTCAGC 60.321 55.000 0.00 0.00 42.84 4.26
244 245 0.320508 CTTCTGTGCAGCTCTCAGCA 60.321 55.000 0.00 2.10 45.56 4.41
245 246 0.107268 TTCTGTGCAGCTCTCAGCAA 59.893 50.000 0.00 0.00 45.56 3.91
246 247 0.107268 TCTGTGCAGCTCTCAGCAAA 59.893 50.000 0.00 0.00 45.56 3.68
247 248 0.949397 CTGTGCAGCTCTCAGCAAAA 59.051 50.000 0.00 0.00 45.56 2.44
248 249 1.335810 CTGTGCAGCTCTCAGCAAAAA 59.664 47.619 0.00 0.00 45.56 1.94
268 269 6.773976 AAAAAGACAAATCAGACCAGAACA 57.226 33.333 0.00 0.00 0.00 3.18
269 270 6.382869 AAAAGACAAATCAGACCAGAACAG 57.617 37.500 0.00 0.00 0.00 3.16
270 271 4.696479 AGACAAATCAGACCAGAACAGT 57.304 40.909 0.00 0.00 0.00 3.55
271 272 5.808366 AGACAAATCAGACCAGAACAGTA 57.192 39.130 0.00 0.00 0.00 2.74
272 273 6.365970 AGACAAATCAGACCAGAACAGTAT 57.634 37.500 0.00 0.00 0.00 2.12
273 274 7.482169 AGACAAATCAGACCAGAACAGTATA 57.518 36.000 0.00 0.00 0.00 1.47
274 275 8.083828 AGACAAATCAGACCAGAACAGTATAT 57.916 34.615 0.00 0.00 0.00 0.86
275 276 7.984050 AGACAAATCAGACCAGAACAGTATATG 59.016 37.037 0.00 0.00 0.00 1.78
276 277 7.851228 ACAAATCAGACCAGAACAGTATATGA 58.149 34.615 0.00 0.00 0.00 2.15
277 278 8.321353 ACAAATCAGACCAGAACAGTATATGAA 58.679 33.333 0.00 0.00 0.00 2.57
278 279 8.607459 CAAATCAGACCAGAACAGTATATGAAC 58.393 37.037 0.00 0.00 0.00 3.18
279 280 6.222038 TCAGACCAGAACAGTATATGAACC 57.778 41.667 0.00 0.00 0.00 3.62
280 281 5.043903 CAGACCAGAACAGTATATGAACCG 58.956 45.833 0.00 0.00 0.00 4.44
281 282 4.710375 AGACCAGAACAGTATATGAACCGT 59.290 41.667 0.00 0.00 0.00 4.83
282 283 5.889853 AGACCAGAACAGTATATGAACCGTA 59.110 40.000 0.00 0.00 0.00 4.02
283 284 5.899299 ACCAGAACAGTATATGAACCGTAC 58.101 41.667 0.00 0.00 0.00 3.67
284 285 5.419788 ACCAGAACAGTATATGAACCGTACA 59.580 40.000 0.00 0.00 0.00 2.90
285 286 5.747197 CCAGAACAGTATATGAACCGTACAC 59.253 44.000 0.00 0.00 0.00 2.90
286 287 6.327154 CAGAACAGTATATGAACCGTACACA 58.673 40.000 0.00 0.00 0.00 3.72
287 288 6.978659 CAGAACAGTATATGAACCGTACACAT 59.021 38.462 0.00 0.00 0.00 3.21
288 289 7.491372 CAGAACAGTATATGAACCGTACACATT 59.509 37.037 0.00 0.00 0.00 2.71
289 290 8.038944 AGAACAGTATATGAACCGTACACATTT 58.961 33.333 0.00 0.00 0.00 2.32
290 291 8.556213 AACAGTATATGAACCGTACACATTTT 57.444 30.769 0.00 0.00 0.00 1.82
291 292 8.556213 ACAGTATATGAACCGTACACATTTTT 57.444 30.769 0.00 0.00 0.00 1.94
292 293 9.656040 ACAGTATATGAACCGTACACATTTTTA 57.344 29.630 0.00 0.00 0.00 1.52
293 294 9.910511 CAGTATATGAACCGTACACATTTTTAC 57.089 33.333 0.00 0.00 0.00 2.01
294 295 9.656040 AGTATATGAACCGTACACATTTTTACA 57.344 29.630 0.00 0.00 0.00 2.41
295 296 9.910511 GTATATGAACCGTACACATTTTTACAG 57.089 33.333 0.00 0.00 0.00 2.74
296 297 8.780846 ATATGAACCGTACACATTTTTACAGA 57.219 30.769 0.00 0.00 0.00 3.41
297 298 6.289745 TGAACCGTACACATTTTTACAGAC 57.710 37.500 0.00 0.00 0.00 3.51
298 299 5.236911 TGAACCGTACACATTTTTACAGACC 59.763 40.000 0.00 0.00 0.00 3.85
299 300 4.964593 ACCGTACACATTTTTACAGACCT 58.035 39.130 0.00 0.00 0.00 3.85
300 301 4.992951 ACCGTACACATTTTTACAGACCTC 59.007 41.667 0.00 0.00 0.00 3.85
301 302 4.390909 CCGTACACATTTTTACAGACCTCC 59.609 45.833 0.00 0.00 0.00 4.30
302 303 4.090930 CGTACACATTTTTACAGACCTCCG 59.909 45.833 0.00 0.00 0.00 4.63
303 304 4.345859 ACACATTTTTACAGACCTCCGA 57.654 40.909 0.00 0.00 0.00 4.55
304 305 4.906618 ACACATTTTTACAGACCTCCGAT 58.093 39.130 0.00 0.00 0.00 4.18
305 306 5.313712 ACACATTTTTACAGACCTCCGATT 58.686 37.500 0.00 0.00 0.00 3.34
306 307 5.768164 ACACATTTTTACAGACCTCCGATTT 59.232 36.000 0.00 0.00 0.00 2.17
307 308 6.086222 CACATTTTTACAGACCTCCGATTTG 58.914 40.000 0.00 0.00 0.00 2.32
308 309 5.768164 ACATTTTTACAGACCTCCGATTTGT 59.232 36.000 0.00 0.00 0.00 2.83
309 310 6.264518 ACATTTTTACAGACCTCCGATTTGTT 59.735 34.615 0.00 0.00 0.00 2.83
310 311 6.702716 TTTTTACAGACCTCCGATTTGTTT 57.297 33.333 0.00 0.00 0.00 2.83
311 312 6.702716 TTTTACAGACCTCCGATTTGTTTT 57.297 33.333 0.00 0.00 0.00 2.43
312 313 6.702716 TTTACAGACCTCCGATTTGTTTTT 57.297 33.333 0.00 0.00 0.00 1.94
330 331 1.391577 TTTTTGCTGAGAGCTGCACA 58.608 45.000 1.02 0.00 46.64 4.57
331 332 0.949397 TTTTGCTGAGAGCTGCACAG 59.051 50.000 1.02 9.52 46.64 3.66
332 333 0.107268 TTTGCTGAGAGCTGCACAGA 59.893 50.000 19.67 7.28 46.64 3.41
333 334 0.107268 TTGCTGAGAGCTGCACAGAA 59.893 50.000 19.67 10.58 46.64 3.02
334 335 0.320508 TGCTGAGAGCTGCACAGAAG 60.321 55.000 19.67 7.28 42.93 2.85
335 336 0.320596 GCTGAGAGCTGCACAGAAGT 60.321 55.000 19.67 0.00 38.45 3.01
336 337 1.712401 CTGAGAGCTGCACAGAAGTC 58.288 55.000 13.36 0.00 37.38 3.01
337 338 0.319728 TGAGAGCTGCACAGAAGTCC 59.680 55.000 1.02 0.00 0.00 3.85
338 339 0.319728 GAGAGCTGCACAGAAGTCCA 59.680 55.000 1.02 0.00 0.00 4.02
339 340 0.761187 AGAGCTGCACAGAAGTCCAA 59.239 50.000 1.02 0.00 0.00 3.53
340 341 1.141657 AGAGCTGCACAGAAGTCCAAA 59.858 47.619 1.02 0.00 0.00 3.28
341 342 2.157738 GAGCTGCACAGAAGTCCAAAT 58.842 47.619 1.02 0.00 0.00 2.32
342 343 1.884579 AGCTGCACAGAAGTCCAAATG 59.115 47.619 1.02 0.00 0.00 2.32
343 344 1.610522 GCTGCACAGAAGTCCAAATGT 59.389 47.619 0.81 0.00 0.00 2.71
344 345 2.035066 GCTGCACAGAAGTCCAAATGTT 59.965 45.455 0.81 0.00 0.00 2.71
345 346 3.491447 GCTGCACAGAAGTCCAAATGTTT 60.491 43.478 0.81 0.00 0.00 2.83
346 347 4.685924 CTGCACAGAAGTCCAAATGTTTT 58.314 39.130 0.00 0.00 0.00 2.43
347 348 4.431809 TGCACAGAAGTCCAAATGTTTTG 58.568 39.130 0.00 0.00 0.00 2.44
348 349 4.159321 TGCACAGAAGTCCAAATGTTTTGA 59.841 37.500 1.65 0.00 0.00 2.69
349 350 5.108517 GCACAGAAGTCCAAATGTTTTGAA 58.891 37.500 1.65 0.00 0.00 2.69
350 351 5.580297 GCACAGAAGTCCAAATGTTTTGAAA 59.420 36.000 1.65 0.00 0.00 2.69
351 352 6.091986 GCACAGAAGTCCAAATGTTTTGAAAA 59.908 34.615 1.65 0.00 0.00 2.29
352 353 7.201635 GCACAGAAGTCCAAATGTTTTGAAAAT 60.202 33.333 0.00 0.00 0.00 1.82
353 354 8.667463 CACAGAAGTCCAAATGTTTTGAAAATT 58.333 29.630 0.00 0.00 0.00 1.82
354 355 8.667463 ACAGAAGTCCAAATGTTTTGAAAATTG 58.333 29.630 0.00 0.00 0.00 2.32
355 356 8.124199 CAGAAGTCCAAATGTTTTGAAAATTGG 58.876 33.333 12.90 12.90 38.88 3.16
356 357 8.046107 AGAAGTCCAAATGTTTTGAAAATTGGA 58.954 29.630 16.22 16.22 42.84 3.53
357 358 7.790823 AGTCCAAATGTTTTGAAAATTGGAG 57.209 32.000 19.15 1.41 44.92 3.86
358 359 6.260714 AGTCCAAATGTTTTGAAAATTGGAGC 59.739 34.615 19.15 14.92 44.92 4.70
359 360 5.236047 TCCAAATGTTTTGAAAATTGGAGCG 59.764 36.000 16.22 0.00 40.87 5.03
360 361 5.007528 CCAAATGTTTTGAAAATTGGAGCGT 59.992 36.000 13.56 0.00 39.69 5.07
361 362 6.201806 CCAAATGTTTTGAAAATTGGAGCGTA 59.798 34.615 13.56 0.00 39.69 4.42
362 363 6.763303 AATGTTTTGAAAATTGGAGCGTAC 57.237 33.333 0.00 0.00 0.00 3.67
363 364 4.612943 TGTTTTGAAAATTGGAGCGTACC 58.387 39.130 0.00 0.00 0.00 3.34
364 365 4.339814 TGTTTTGAAAATTGGAGCGTACCT 59.660 37.500 0.00 0.00 0.00 3.08
365 366 4.759516 TTTGAAAATTGGAGCGTACCTC 57.240 40.909 3.50 3.50 39.98 3.85
366 367 3.410631 TGAAAATTGGAGCGTACCTCA 57.589 42.857 11.82 0.00 42.62 3.86
367 368 3.950397 TGAAAATTGGAGCGTACCTCAT 58.050 40.909 11.82 0.00 42.62 2.90
368 369 3.689161 TGAAAATTGGAGCGTACCTCATG 59.311 43.478 11.82 0.00 42.62 3.07
369 370 1.668419 AATTGGAGCGTACCTCATGC 58.332 50.000 11.82 0.00 42.62 4.06
370 371 0.541392 ATTGGAGCGTACCTCATGCA 59.459 50.000 11.82 0.00 42.62 3.96
371 372 0.541392 TTGGAGCGTACCTCATGCAT 59.459 50.000 11.82 0.00 42.62 3.96
372 373 0.104855 TGGAGCGTACCTCATGCATC 59.895 55.000 0.00 0.00 42.62 3.91
373 374 0.104855 GGAGCGTACCTCATGCATCA 59.895 55.000 0.00 0.00 42.62 3.07
374 375 1.473257 GGAGCGTACCTCATGCATCAA 60.473 52.381 0.00 0.00 42.62 2.57
375 376 2.279741 GAGCGTACCTCATGCATCAAA 58.720 47.619 0.00 0.00 42.04 2.69
376 377 2.874701 GAGCGTACCTCATGCATCAAAT 59.125 45.455 0.00 0.00 42.04 2.32
377 378 3.282021 AGCGTACCTCATGCATCAAATT 58.718 40.909 0.00 0.00 42.04 1.82
378 379 3.065786 AGCGTACCTCATGCATCAAATTG 59.934 43.478 0.00 0.00 42.04 2.32
379 380 3.181497 GCGTACCTCATGCATCAAATTGT 60.181 43.478 0.00 0.00 39.15 2.71
380 381 4.591202 CGTACCTCATGCATCAAATTGTC 58.409 43.478 0.00 0.00 0.00 3.18
381 382 4.496341 CGTACCTCATGCATCAAATTGTCC 60.496 45.833 0.00 0.00 0.00 4.02
382 383 3.433343 ACCTCATGCATCAAATTGTCCA 58.567 40.909 0.00 0.00 0.00 4.02
383 384 3.194116 ACCTCATGCATCAAATTGTCCAC 59.806 43.478 0.00 0.00 0.00 4.02
384 385 3.429822 CCTCATGCATCAAATTGTCCACC 60.430 47.826 0.00 0.00 0.00 4.61
385 386 3.163467 TCATGCATCAAATTGTCCACCA 58.837 40.909 0.00 0.00 0.00 4.17
386 387 3.056678 TCATGCATCAAATTGTCCACCAC 60.057 43.478 0.00 0.00 0.00 4.16
387 388 1.617850 TGCATCAAATTGTCCACCACC 59.382 47.619 0.00 0.00 0.00 4.61
388 389 1.066929 GCATCAAATTGTCCACCACCC 60.067 52.381 0.00 0.00 0.00 4.61
389 390 2.246469 CATCAAATTGTCCACCACCCA 58.754 47.619 0.00 0.00 0.00 4.51
390 391 2.461300 TCAAATTGTCCACCACCCAA 57.539 45.000 0.00 0.00 0.00 4.12
391 392 2.969628 TCAAATTGTCCACCACCCAAT 58.030 42.857 0.00 0.00 0.00 3.16
392 393 3.312890 TCAAATTGTCCACCACCCAATT 58.687 40.909 0.00 0.00 39.72 2.32
393 394 3.713764 TCAAATTGTCCACCACCCAATTT 59.286 39.130 0.00 0.00 45.02 1.82
394 395 4.164988 TCAAATTGTCCACCACCCAATTTT 59.835 37.500 6.80 0.00 42.88 1.82
395 396 4.787135 AATTGTCCACCACCCAATTTTT 57.213 36.364 0.00 0.00 35.79 1.94
444 445 0.308376 TTTTTCGTGGGCGTAAGTGC 59.692 50.000 0.00 0.00 39.49 4.40
445 446 0.814410 TTTTCGTGGGCGTAAGTGCA 60.814 50.000 0.00 0.00 39.49 4.57
446 447 1.225376 TTTCGTGGGCGTAAGTGCAG 61.225 55.000 0.00 0.00 39.49 4.41
447 448 2.048597 CGTGGGCGTAAGTGCAGA 60.049 61.111 0.00 0.00 41.68 4.26
448 449 1.447838 CGTGGGCGTAAGTGCAGAT 60.448 57.895 0.00 0.00 41.68 2.90
449 450 1.695893 CGTGGGCGTAAGTGCAGATG 61.696 60.000 0.00 0.00 41.68 2.90
450 451 0.391130 GTGGGCGTAAGTGCAGATGA 60.391 55.000 0.00 0.00 41.68 2.92
451 452 0.108186 TGGGCGTAAGTGCAGATGAG 60.108 55.000 0.00 0.00 41.68 2.90
452 453 1.432270 GGGCGTAAGTGCAGATGAGC 61.432 60.000 0.00 0.00 41.68 4.26
453 454 0.460987 GGCGTAAGTGCAGATGAGCT 60.461 55.000 0.00 0.00 41.68 4.09
454 455 0.926846 GCGTAAGTGCAGATGAGCTC 59.073 55.000 6.82 6.82 41.68 4.09
455 456 1.195347 CGTAAGTGCAGATGAGCTCG 58.805 55.000 9.64 0.00 33.52 5.03
456 457 1.565305 GTAAGTGCAGATGAGCTCGG 58.435 55.000 9.64 0.00 33.52 4.63
457 458 0.461548 TAAGTGCAGATGAGCTCGGG 59.538 55.000 9.64 0.00 33.52 5.14
458 459 2.866085 AAGTGCAGATGAGCTCGGGC 62.866 60.000 9.64 0.00 39.06 6.13
468 469 4.941609 GCTCGGGCTCAGATTCAA 57.058 55.556 0.00 0.00 35.22 2.69
469 470 3.159298 GCTCGGGCTCAGATTCAAA 57.841 52.632 0.00 0.00 35.22 2.69
470 471 1.673168 GCTCGGGCTCAGATTCAAAT 58.327 50.000 0.00 0.00 35.22 2.32
471 472 2.019984 GCTCGGGCTCAGATTCAAATT 58.980 47.619 0.00 0.00 35.22 1.82
472 473 2.424956 GCTCGGGCTCAGATTCAAATTT 59.575 45.455 0.00 0.00 35.22 1.82
473 474 3.119352 GCTCGGGCTCAGATTCAAATTTT 60.119 43.478 0.00 0.00 35.22 1.82
474 475 4.666237 CTCGGGCTCAGATTCAAATTTTC 58.334 43.478 0.00 0.00 0.00 2.29
475 476 3.443681 TCGGGCTCAGATTCAAATTTTCC 59.556 43.478 0.00 0.00 0.00 3.13
487 488 9.573133 AGATTCAAATTTTCCGTCATAATGTTC 57.427 29.630 0.00 0.00 0.00 3.18
551 557 8.143835 ACCCTTGAGAACAAATGATAAAAACAG 58.856 33.333 0.00 0.00 35.49 3.16
626 659 2.784380 GAGATGAGCGATGTAACGACAC 59.216 50.000 0.00 0.00 38.76 3.67
724 767 0.472471 GAAGTCCGCCCATATCCCAA 59.528 55.000 0.00 0.00 0.00 4.12
739 782 0.040204 CCCAAGAATGGTTCAGGCCT 59.960 55.000 0.00 0.00 46.01 5.19
988 1048 5.008019 GCTACCATAGTTACGTGTAGTAGCA 59.992 44.000 18.94 0.00 46.66 3.49
1500 2986 1.305549 GTTCACTCCGGGGTCCCTA 60.306 63.158 2.28 0.00 0.00 3.53
1701 3190 1.202758 TCCATGTCTTTCGTGCAAGGT 60.203 47.619 0.00 0.00 0.00 3.50
1880 3370 1.611519 GCGTATAGGCCTCTGAGAGT 58.388 55.000 9.68 0.00 0.00 3.24
2339 3838 1.281656 GGTTTTGTGCCGAGTTCCG 59.718 57.895 0.00 0.00 38.18 4.30
2369 3868 4.294416 ACGAGTTCATTCTATCGTGGAG 57.706 45.455 0.00 0.00 45.83 3.86
2428 3927 6.902771 ATTGAACTCCGTAGCTAGTGATAT 57.097 37.500 0.00 0.00 0.00 1.63
2429 3928 5.690997 TGAACTCCGTAGCTAGTGATATG 57.309 43.478 0.00 0.00 0.00 1.78
2479 3978 4.617253 TTTCCAATGAAAGAGGACTCGA 57.383 40.909 0.00 0.00 35.58 4.04
2480 3979 3.594603 TCCAATGAAAGAGGACTCGAC 57.405 47.619 0.00 0.00 34.09 4.20
2488 3987 5.287226 TGAAAGAGGACTCGACAAACTAAC 58.713 41.667 0.00 0.00 34.09 2.34
2499 3998 5.362263 TCGACAAACTAACTAAACTTGGCT 58.638 37.500 0.00 0.00 0.00 4.75
2536 4035 6.043938 TCACCCAGTTCCTAATAGAAACAACT 59.956 38.462 0.00 0.00 0.00 3.16
2557 4057 3.010413 GCAAATCTGGCAGGTGGGC 62.010 63.158 15.73 11.38 43.73 5.36
2575 4075 0.531974 GCCCTGTTGTCGAGTGTCAA 60.532 55.000 0.00 0.00 0.00 3.18
2582 4082 3.673338 TGTTGTCGAGTGTCAATTCGATC 59.327 43.478 12.25 8.07 44.90 3.69
2671 4189 6.461640 TGAATATATCTCAGTCGACGACCTA 58.538 40.000 23.76 11.58 32.18 3.08
2678 4196 1.069838 CAGTCGACGACCTATCCATCG 60.070 57.143 23.76 0.00 43.97 3.84
2701 4219 5.675538 GTCTATCTAACTGGTTGATTGCCT 58.324 41.667 0.00 0.00 0.00 4.75
2702 4220 6.116126 GTCTATCTAACTGGTTGATTGCCTT 58.884 40.000 0.00 0.00 0.00 4.35
2717 4235 1.067916 CCTTGTGTTTGTGGGCTGC 59.932 57.895 0.00 0.00 0.00 5.25
2746 4264 3.632333 TGTAGACCGAGATCAATGGAGT 58.368 45.455 5.06 0.00 0.00 3.85
2755 4273 4.095334 CGAGATCAATGGAGTGCATGAAAA 59.905 41.667 0.00 0.00 0.00 2.29
2827 4345 6.737254 ATTAATGGAACCACGACTGTTAAG 57.263 37.500 0.00 0.00 0.00 1.85
2879 4399 5.163652 GGACTAAACGTAGTACAACCGGTAT 60.164 44.000 8.00 0.95 45.00 2.73
2889 4409 0.376852 CAACCGGTATGGATGTTGCG 59.623 55.000 8.00 0.00 42.00 4.85
2936 4456 2.965572 TGTATAGGGTGTAACGTGGC 57.034 50.000 0.00 0.00 38.12 5.01
2942 4462 1.277440 GGTGTAACGTGGCGTGTTG 59.723 57.895 4.63 0.00 39.99 3.33
2945 4465 0.179105 TGTAACGTGGCGTGTTGTCT 60.179 50.000 4.63 0.00 39.99 3.41
2946 4466 0.505655 GTAACGTGGCGTGTTGTCTC 59.494 55.000 4.63 0.00 39.99 3.36
2951 4471 0.039798 GTGGCGTGTTGTCTCGACTA 60.040 55.000 0.00 0.00 39.05 2.59
2958 4478 4.659088 CGTGTTGTCTCGACTATGTATGT 58.341 43.478 0.00 0.00 33.21 2.29
2978 4498 5.319140 TGTGTGCGTGTAATCTACATACT 57.681 39.130 0.00 0.00 41.34 2.12
3040 4560 3.145559 TGGAGTAGGGGAAAAGCCTAT 57.854 47.619 0.00 0.00 36.66 2.57
3048 4568 5.466127 AGGGGAAAAGCCTATCAATAACA 57.534 39.130 0.00 0.00 36.66 2.41
3052 4572 6.461509 GGGGAAAAGCCTATCAATAACATGTG 60.462 42.308 0.00 0.00 36.66 3.21
3068 4588 4.265073 ACATGTGCCCTCTGTAATCTTTC 58.735 43.478 0.00 0.00 0.00 2.62
3128 4648 9.056005 GCATACACTTCATTTTCTCATATGGTA 57.944 33.333 2.13 0.00 0.00 3.25
3148 4668 8.829373 ATGGTAATTAGAGCTTTCCTCAAAAT 57.171 30.769 0.00 0.00 43.31 1.82
3149 4669 8.650143 TGGTAATTAGAGCTTTCCTCAAAATT 57.350 30.769 0.00 0.00 43.31 1.82
3178 4698 2.416893 GCGATGTCTTCAAGTTCCTTCC 59.583 50.000 0.00 0.00 0.00 3.46
3180 4700 2.951229 TGTCTTCAAGTTCCTTCCCC 57.049 50.000 0.00 0.00 0.00 4.81
3183 4703 2.372172 GTCTTCAAGTTCCTTCCCCTCA 59.628 50.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 2.851104 CACCGAAACGCCGTTCTC 59.149 61.111 1.60 2.63 0.00 2.87
99 100 4.379143 GGCACCGAAACGCCGTTC 62.379 66.667 1.60 0.00 38.82 3.95
122 123 0.961019 TTTTGACTGGGTGCAGATGC 59.039 50.000 0.00 0.00 42.50 3.91
164 165 7.130681 TCAAATTGTCTACCACCCAATTTTT 57.869 32.000 6.80 0.00 42.88 1.94
165 166 6.739331 TCAAATTGTCTACCACCCAATTTT 57.261 33.333 6.80 0.00 42.88 1.82
166 167 6.700352 CATCAAATTGTCTACCACCCAATTT 58.300 36.000 0.00 0.00 45.02 1.82
167 168 5.337491 GCATCAAATTGTCTACCACCCAATT 60.337 40.000 0.00 0.00 39.72 2.32
168 169 4.160252 GCATCAAATTGTCTACCACCCAAT 59.840 41.667 0.00 0.00 0.00 3.16
169 170 3.509575 GCATCAAATTGTCTACCACCCAA 59.490 43.478 0.00 0.00 0.00 4.12
170 171 3.088532 GCATCAAATTGTCTACCACCCA 58.911 45.455 0.00 0.00 0.00 4.51
171 172 2.097466 CGCATCAAATTGTCTACCACCC 59.903 50.000 0.00 0.00 0.00 4.61
172 173 2.747446 ACGCATCAAATTGTCTACCACC 59.253 45.455 0.00 0.00 0.00 4.61
173 174 3.435327 TCACGCATCAAATTGTCTACCAC 59.565 43.478 0.00 0.00 0.00 4.16
174 175 3.669536 TCACGCATCAAATTGTCTACCA 58.330 40.909 0.00 0.00 0.00 3.25
175 176 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
176 177 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
177 178 3.937814 ACCTCACGCATCAAATTGTCTA 58.062 40.909 0.00 0.00 0.00 2.59
178 179 2.783135 ACCTCACGCATCAAATTGTCT 58.217 42.857 0.00 0.00 0.00 3.41
179 180 4.591202 CATACCTCACGCATCAAATTGTC 58.409 43.478 0.00 0.00 0.00 3.18
180 181 3.181497 GCATACCTCACGCATCAAATTGT 60.181 43.478 0.00 0.00 0.00 2.71
181 182 3.065786 AGCATACCTCACGCATCAAATTG 59.934 43.478 0.00 0.00 0.00 2.32
182 183 3.282021 AGCATACCTCACGCATCAAATT 58.718 40.909 0.00 0.00 0.00 1.82
183 184 2.874701 GAGCATACCTCACGCATCAAAT 59.125 45.455 0.00 0.00 40.45 2.32
184 185 2.279741 GAGCATACCTCACGCATCAAA 58.720 47.619 0.00 0.00 40.45 2.69
185 186 1.473257 GGAGCATACCTCACGCATCAA 60.473 52.381 0.00 0.00 42.62 2.57
186 187 0.104855 GGAGCATACCTCACGCATCA 59.895 55.000 0.00 0.00 42.62 3.07
187 188 0.104855 TGGAGCATACCTCACGCATC 59.895 55.000 0.00 0.00 42.62 3.91
188 189 0.541392 TTGGAGCATACCTCACGCAT 59.459 50.000 0.00 0.00 42.62 4.73
189 190 0.541392 ATTGGAGCATACCTCACGCA 59.459 50.000 0.00 0.00 42.62 5.24
190 191 1.668419 AATTGGAGCATACCTCACGC 58.332 50.000 0.00 0.00 42.62 5.34
191 192 3.689161 TGAAAATTGGAGCATACCTCACG 59.311 43.478 0.00 0.00 42.62 4.35
192 193 5.643379 TTGAAAATTGGAGCATACCTCAC 57.357 39.130 0.00 0.00 42.62 3.51
193 194 6.041409 TGTTTTGAAAATTGGAGCATACCTCA 59.959 34.615 0.00 0.00 42.62 3.86
194 195 6.454795 TGTTTTGAAAATTGGAGCATACCTC 58.545 36.000 0.00 0.00 39.98 3.85
195 196 6.418057 TGTTTTGAAAATTGGAGCATACCT 57.582 33.333 0.00 0.00 0.00 3.08
196 197 7.671495 AATGTTTTGAAAATTGGAGCATACC 57.329 32.000 0.00 0.00 0.00 2.73
197 198 8.016801 CCAAATGTTTTGAAAATTGGAGCATAC 58.983 33.333 13.56 0.00 39.69 2.39
198 199 7.935755 TCCAAATGTTTTGAAAATTGGAGCATA 59.064 29.630 16.22 0.07 40.87 3.14
199 200 6.771749 TCCAAATGTTTTGAAAATTGGAGCAT 59.228 30.769 16.22 2.71 40.87 3.79
200 201 6.038050 GTCCAAATGTTTTGAAAATTGGAGCA 59.962 34.615 19.15 2.48 44.92 4.26
201 202 6.260714 AGTCCAAATGTTTTGAAAATTGGAGC 59.739 34.615 19.15 14.92 44.92 4.70
202 203 7.790823 AGTCCAAATGTTTTGAAAATTGGAG 57.209 32.000 19.15 1.41 44.92 3.86
203 204 8.046107 AGAAGTCCAAATGTTTTGAAAATTGGA 58.954 29.630 16.22 16.22 42.84 3.53
204 205 8.124199 CAGAAGTCCAAATGTTTTGAAAATTGG 58.876 33.333 12.90 12.90 38.88 3.16
205 206 8.667463 ACAGAAGTCCAAATGTTTTGAAAATTG 58.333 29.630 0.00 0.00 0.00 2.32
206 207 8.667463 CACAGAAGTCCAAATGTTTTGAAAATT 58.333 29.630 0.00 0.00 0.00 1.82
207 208 7.201635 GCACAGAAGTCCAAATGTTTTGAAAAT 60.202 33.333 0.00 0.00 0.00 1.82
208 209 6.091986 GCACAGAAGTCCAAATGTTTTGAAAA 59.908 34.615 1.65 0.00 0.00 2.29
209 210 5.580297 GCACAGAAGTCCAAATGTTTTGAAA 59.420 36.000 1.65 0.00 0.00 2.69
210 211 5.108517 GCACAGAAGTCCAAATGTTTTGAA 58.891 37.500 1.65 0.00 0.00 2.69
211 212 4.159321 TGCACAGAAGTCCAAATGTTTTGA 59.841 37.500 1.65 0.00 0.00 2.69
212 213 4.431809 TGCACAGAAGTCCAAATGTTTTG 58.568 39.130 0.00 0.00 0.00 2.44
213 214 4.685924 CTGCACAGAAGTCCAAATGTTTT 58.314 39.130 0.00 0.00 0.00 2.43
214 215 3.491447 GCTGCACAGAAGTCCAAATGTTT 60.491 43.478 0.81 0.00 0.00 2.83
215 216 2.035066 GCTGCACAGAAGTCCAAATGTT 59.965 45.455 0.81 0.00 0.00 2.71
216 217 1.610522 GCTGCACAGAAGTCCAAATGT 59.389 47.619 0.81 0.00 0.00 2.71
217 218 1.884579 AGCTGCACAGAAGTCCAAATG 59.115 47.619 1.02 0.00 0.00 2.32
218 219 2.157738 GAGCTGCACAGAAGTCCAAAT 58.842 47.619 1.02 0.00 0.00 2.32
219 220 1.141657 AGAGCTGCACAGAAGTCCAAA 59.858 47.619 1.02 0.00 0.00 3.28
220 221 0.761187 AGAGCTGCACAGAAGTCCAA 59.239 50.000 1.02 0.00 0.00 3.53
221 222 0.319728 GAGAGCTGCACAGAAGTCCA 59.680 55.000 1.02 0.00 0.00 4.02
222 223 0.319728 TGAGAGCTGCACAGAAGTCC 59.680 55.000 1.02 0.00 0.00 3.85
223 224 1.712401 CTGAGAGCTGCACAGAAGTC 58.288 55.000 13.36 0.00 37.38 3.01
224 225 0.320596 GCTGAGAGCTGCACAGAAGT 60.321 55.000 19.67 0.00 38.45 3.01
225 226 0.320508 TGCTGAGAGCTGCACAGAAG 60.321 55.000 19.67 7.28 42.93 2.85
226 227 0.107268 TTGCTGAGAGCTGCACAGAA 59.893 50.000 19.67 10.58 46.64 3.02
227 228 0.107268 TTTGCTGAGAGCTGCACAGA 59.893 50.000 19.67 7.28 46.64 3.41
228 229 0.949397 TTTTGCTGAGAGCTGCACAG 59.051 50.000 1.02 9.52 46.64 3.66
229 230 1.391577 TTTTTGCTGAGAGCTGCACA 58.608 45.000 1.02 0.00 46.64 4.57
245 246 6.378280 ACTGTTCTGGTCTGATTTGTCTTTTT 59.622 34.615 0.00 0.00 0.00 1.94
246 247 5.888161 ACTGTTCTGGTCTGATTTGTCTTTT 59.112 36.000 0.00 0.00 0.00 2.27
247 248 5.440610 ACTGTTCTGGTCTGATTTGTCTTT 58.559 37.500 0.00 0.00 0.00 2.52
248 249 5.041191 ACTGTTCTGGTCTGATTTGTCTT 57.959 39.130 0.00 0.00 0.00 3.01
249 250 4.696479 ACTGTTCTGGTCTGATTTGTCT 57.304 40.909 0.00 0.00 0.00 3.41
250 251 7.981789 TCATATACTGTTCTGGTCTGATTTGTC 59.018 37.037 0.00 0.00 0.00 3.18
251 252 7.851228 TCATATACTGTTCTGGTCTGATTTGT 58.149 34.615 0.00 0.00 0.00 2.83
252 253 8.607459 GTTCATATACTGTTCTGGTCTGATTTG 58.393 37.037 0.00 0.00 0.00 2.32
253 254 7.770897 GGTTCATATACTGTTCTGGTCTGATTT 59.229 37.037 0.00 0.00 0.00 2.17
254 255 7.275920 GGTTCATATACTGTTCTGGTCTGATT 58.724 38.462 0.00 0.00 0.00 2.57
255 256 6.461648 CGGTTCATATACTGTTCTGGTCTGAT 60.462 42.308 0.00 0.00 0.00 2.90
256 257 5.163550 CGGTTCATATACTGTTCTGGTCTGA 60.164 44.000 0.00 0.00 0.00 3.27
257 258 5.043903 CGGTTCATATACTGTTCTGGTCTG 58.956 45.833 0.00 0.00 0.00 3.51
258 259 4.710375 ACGGTTCATATACTGTTCTGGTCT 59.290 41.667 0.00 0.00 33.95 3.85
259 260 5.007385 ACGGTTCATATACTGTTCTGGTC 57.993 43.478 0.00 0.00 33.95 4.02
260 261 5.419788 TGTACGGTTCATATACTGTTCTGGT 59.580 40.000 0.00 0.00 38.53 4.00
261 262 5.747197 GTGTACGGTTCATATACTGTTCTGG 59.253 44.000 0.00 0.00 38.53 3.86
262 263 6.327154 TGTGTACGGTTCATATACTGTTCTG 58.673 40.000 0.00 0.00 38.53 3.02
263 264 6.519679 TGTGTACGGTTCATATACTGTTCT 57.480 37.500 0.00 0.00 38.53 3.01
264 265 7.766219 AATGTGTACGGTTCATATACTGTTC 57.234 36.000 0.00 0.00 38.53 3.18
265 266 8.556213 AAAATGTGTACGGTTCATATACTGTT 57.444 30.769 0.00 0.00 38.53 3.16
266 267 8.556213 AAAAATGTGTACGGTTCATATACTGT 57.444 30.769 0.00 0.00 40.59 3.55
267 268 9.910511 GTAAAAATGTGTACGGTTCATATACTG 57.089 33.333 0.00 0.00 0.00 2.74
268 269 9.656040 TGTAAAAATGTGTACGGTTCATATACT 57.344 29.630 0.00 0.00 0.00 2.12
269 270 9.910511 CTGTAAAAATGTGTACGGTTCATATAC 57.089 33.333 0.00 0.00 0.00 1.47
270 271 9.872721 TCTGTAAAAATGTGTACGGTTCATATA 57.127 29.630 0.00 0.00 0.00 0.86
271 272 8.662141 GTCTGTAAAAATGTGTACGGTTCATAT 58.338 33.333 0.00 0.00 0.00 1.78
272 273 7.118101 GGTCTGTAAAAATGTGTACGGTTCATA 59.882 37.037 0.00 0.00 0.00 2.15
273 274 6.072893 GGTCTGTAAAAATGTGTACGGTTCAT 60.073 38.462 0.00 0.00 0.00 2.57
274 275 5.236911 GGTCTGTAAAAATGTGTACGGTTCA 59.763 40.000 0.00 0.00 0.00 3.18
275 276 5.467735 AGGTCTGTAAAAATGTGTACGGTTC 59.532 40.000 0.00 0.00 0.00 3.62
276 277 5.370679 AGGTCTGTAAAAATGTGTACGGTT 58.629 37.500 0.00 0.00 0.00 4.44
277 278 4.964593 AGGTCTGTAAAAATGTGTACGGT 58.035 39.130 0.00 0.00 0.00 4.83
278 279 4.390909 GGAGGTCTGTAAAAATGTGTACGG 59.609 45.833 0.00 0.00 0.00 4.02
279 280 4.090930 CGGAGGTCTGTAAAAATGTGTACG 59.909 45.833 0.00 0.00 0.00 3.67
280 281 5.232463 TCGGAGGTCTGTAAAAATGTGTAC 58.768 41.667 0.00 0.00 0.00 2.90
281 282 5.471556 TCGGAGGTCTGTAAAAATGTGTA 57.528 39.130 0.00 0.00 0.00 2.90
282 283 4.345859 TCGGAGGTCTGTAAAAATGTGT 57.654 40.909 0.00 0.00 0.00 3.72
283 284 5.880054 AATCGGAGGTCTGTAAAAATGTG 57.120 39.130 0.00 0.00 0.00 3.21
284 285 5.768164 ACAAATCGGAGGTCTGTAAAAATGT 59.232 36.000 0.00 0.00 0.00 2.71
285 286 6.254281 ACAAATCGGAGGTCTGTAAAAATG 57.746 37.500 0.00 0.00 0.00 2.32
286 287 6.894339 AACAAATCGGAGGTCTGTAAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
287 288 6.702716 AAACAAATCGGAGGTCTGTAAAAA 57.297 33.333 0.00 0.00 0.00 1.94
288 289 6.702716 AAAACAAATCGGAGGTCTGTAAAA 57.297 33.333 0.00 0.00 0.00 1.52
289 290 6.702716 AAAAACAAATCGGAGGTCTGTAAA 57.297 33.333 0.00 0.00 0.00 2.01
311 312 1.335810 CTGTGCAGCTCTCAGCAAAAA 59.664 47.619 0.00 0.00 45.56 1.94
312 313 0.949397 CTGTGCAGCTCTCAGCAAAA 59.051 50.000 0.00 0.00 45.56 2.44
313 314 0.107268 TCTGTGCAGCTCTCAGCAAA 59.893 50.000 0.00 0.00 45.56 3.68
314 315 0.107268 TTCTGTGCAGCTCTCAGCAA 59.893 50.000 0.00 0.00 45.56 3.91
315 316 0.320508 CTTCTGTGCAGCTCTCAGCA 60.321 55.000 0.00 2.10 45.56 4.41
316 317 0.320596 ACTTCTGTGCAGCTCTCAGC 60.321 55.000 0.00 0.00 42.84 4.26
317 318 1.672441 GGACTTCTGTGCAGCTCTCAG 60.672 57.143 0.00 0.28 37.58 3.35
318 319 0.319728 GGACTTCTGTGCAGCTCTCA 59.680 55.000 0.00 0.00 34.50 3.27
319 320 0.319728 TGGACTTCTGTGCAGCTCTC 59.680 55.000 0.00 0.00 39.59 3.20
320 321 0.761187 TTGGACTTCTGTGCAGCTCT 59.239 50.000 0.00 0.00 44.96 4.09
321 322 1.597742 TTTGGACTTCTGTGCAGCTC 58.402 50.000 0.00 0.00 44.96 4.09
322 323 1.884579 CATTTGGACTTCTGTGCAGCT 59.115 47.619 0.00 0.00 44.96 4.24
323 324 1.610522 ACATTTGGACTTCTGTGCAGC 59.389 47.619 0.00 0.00 44.96 5.25
324 325 3.996150 AACATTTGGACTTCTGTGCAG 57.004 42.857 0.00 0.00 44.96 4.41
325 326 4.159321 TCAAAACATTTGGACTTCTGTGCA 59.841 37.500 3.25 0.00 42.73 4.57
326 327 4.681744 TCAAAACATTTGGACTTCTGTGC 58.318 39.130 3.25 0.00 34.96 4.57
327 328 7.593875 TTTTCAAAACATTTGGACTTCTGTG 57.406 32.000 3.25 0.00 0.00 3.66
328 329 8.667463 CAATTTTCAAAACATTTGGACTTCTGT 58.333 29.630 3.25 0.00 0.00 3.41
329 330 8.124199 CCAATTTTCAAAACATTTGGACTTCTG 58.876 33.333 7.67 0.00 36.55 3.02
330 331 8.046107 TCCAATTTTCAAAACATTTGGACTTCT 58.954 29.630 11.02 0.00 38.10 2.85
331 332 8.207521 TCCAATTTTCAAAACATTTGGACTTC 57.792 30.769 11.02 0.00 38.10 3.01
332 333 7.201723 GCTCCAATTTTCAAAACATTTGGACTT 60.202 33.333 11.02 0.00 38.10 3.01
333 334 6.260714 GCTCCAATTTTCAAAACATTTGGACT 59.739 34.615 11.02 0.00 38.10 3.85
334 335 6.429624 GCTCCAATTTTCAAAACATTTGGAC 58.570 36.000 11.02 6.49 38.10 4.02
335 336 5.236047 CGCTCCAATTTTCAAAACATTTGGA 59.764 36.000 13.46 13.46 40.08 3.53
336 337 5.007528 ACGCTCCAATTTTCAAAACATTTGG 59.992 36.000 7.23 7.23 35.93 3.28
337 338 6.046885 ACGCTCCAATTTTCAAAACATTTG 57.953 33.333 0.00 0.00 0.00 2.32
338 339 6.201997 GGTACGCTCCAATTTTCAAAACATTT 59.798 34.615 0.00 0.00 0.00 2.32
339 340 5.694458 GGTACGCTCCAATTTTCAAAACATT 59.306 36.000 0.00 0.00 0.00 2.71
340 341 5.010617 AGGTACGCTCCAATTTTCAAAACAT 59.989 36.000 0.00 0.00 0.00 2.71
341 342 4.339814 AGGTACGCTCCAATTTTCAAAACA 59.660 37.500 0.00 0.00 0.00 2.83
342 343 4.866921 AGGTACGCTCCAATTTTCAAAAC 58.133 39.130 0.00 0.00 0.00 2.43
343 344 4.580995 TGAGGTACGCTCCAATTTTCAAAA 59.419 37.500 8.36 0.00 0.00 2.44
344 345 4.138290 TGAGGTACGCTCCAATTTTCAAA 58.862 39.130 8.36 0.00 0.00 2.69
345 346 3.745799 TGAGGTACGCTCCAATTTTCAA 58.254 40.909 8.36 0.00 0.00 2.69
346 347 3.410631 TGAGGTACGCTCCAATTTTCA 57.589 42.857 8.36 0.00 0.00 2.69
347 348 3.487544 GCATGAGGTACGCTCCAATTTTC 60.488 47.826 0.00 0.00 0.00 2.29
348 349 2.423538 GCATGAGGTACGCTCCAATTTT 59.576 45.455 0.00 0.00 0.00 1.82
349 350 2.017049 GCATGAGGTACGCTCCAATTT 58.983 47.619 0.00 0.00 0.00 1.82
350 351 1.065491 TGCATGAGGTACGCTCCAATT 60.065 47.619 0.00 0.00 0.00 2.32
351 352 0.541392 TGCATGAGGTACGCTCCAAT 59.459 50.000 0.00 0.00 0.00 3.16
352 353 0.541392 ATGCATGAGGTACGCTCCAA 59.459 50.000 0.00 0.00 0.00 3.53
353 354 0.104855 GATGCATGAGGTACGCTCCA 59.895 55.000 2.46 1.82 0.00 3.86
354 355 0.104855 TGATGCATGAGGTACGCTCC 59.895 55.000 2.46 0.00 0.00 4.70
355 356 1.939974 TTGATGCATGAGGTACGCTC 58.060 50.000 2.46 4.84 0.00 5.03
356 357 2.401583 TTTGATGCATGAGGTACGCT 57.598 45.000 2.46 0.00 0.00 5.07
357 358 3.181497 ACAATTTGATGCATGAGGTACGC 60.181 43.478 2.46 0.00 0.00 4.42
358 359 4.496341 GGACAATTTGATGCATGAGGTACG 60.496 45.833 2.46 0.00 0.00 3.67
359 360 4.398988 TGGACAATTTGATGCATGAGGTAC 59.601 41.667 2.46 0.00 0.00 3.34
360 361 4.398988 GTGGACAATTTGATGCATGAGGTA 59.601 41.667 2.46 0.00 0.00 3.08
361 362 3.194116 GTGGACAATTTGATGCATGAGGT 59.806 43.478 2.46 0.00 0.00 3.85
362 363 3.429822 GGTGGACAATTTGATGCATGAGG 60.430 47.826 2.46 0.00 0.00 3.86
363 364 3.193903 TGGTGGACAATTTGATGCATGAG 59.806 43.478 2.46 0.00 0.00 2.90
364 365 3.056678 GTGGTGGACAATTTGATGCATGA 60.057 43.478 2.46 0.00 0.00 3.07
365 366 3.255725 GTGGTGGACAATTTGATGCATG 58.744 45.455 2.46 0.00 0.00 4.06
366 367 2.234414 GGTGGTGGACAATTTGATGCAT 59.766 45.455 0.00 0.00 0.00 3.96
367 368 1.617850 GGTGGTGGACAATTTGATGCA 59.382 47.619 2.79 0.00 0.00 3.96
368 369 1.066929 GGGTGGTGGACAATTTGATGC 60.067 52.381 2.79 0.00 0.00 3.91
369 370 2.246469 TGGGTGGTGGACAATTTGATG 58.754 47.619 2.79 0.00 0.00 3.07
370 371 2.692709 TGGGTGGTGGACAATTTGAT 57.307 45.000 2.79 0.00 0.00 2.57
371 372 2.461300 TTGGGTGGTGGACAATTTGA 57.539 45.000 2.79 0.00 0.00 2.69
372 373 3.767902 AATTGGGTGGTGGACAATTTG 57.232 42.857 0.00 0.00 40.73 2.32
374 375 4.787135 AAAAATTGGGTGGTGGACAATT 57.213 36.364 0.00 0.00 44.18 2.32
425 426 0.308376 GCACTTACGCCCACGAAAAA 59.692 50.000 0.00 0.00 43.93 1.94
426 427 0.814410 TGCACTTACGCCCACGAAAA 60.814 50.000 0.00 0.00 43.93 2.29
427 428 1.225376 CTGCACTTACGCCCACGAAA 61.225 55.000 0.00 0.00 43.93 3.46
428 429 1.666553 CTGCACTTACGCCCACGAA 60.667 57.895 0.00 0.00 43.93 3.85
429 430 1.884075 ATCTGCACTTACGCCCACGA 61.884 55.000 0.00 0.00 43.93 4.35
431 432 0.391130 TCATCTGCACTTACGCCCAC 60.391 55.000 0.00 0.00 0.00 4.61
432 433 0.108186 CTCATCTGCACTTACGCCCA 60.108 55.000 0.00 0.00 0.00 5.36
433 434 1.432270 GCTCATCTGCACTTACGCCC 61.432 60.000 0.00 0.00 0.00 6.13
434 435 0.460987 AGCTCATCTGCACTTACGCC 60.461 55.000 0.00 0.00 34.99 5.68
435 436 0.926846 GAGCTCATCTGCACTTACGC 59.073 55.000 9.40 0.00 34.99 4.42
436 437 1.195347 CGAGCTCATCTGCACTTACG 58.805 55.000 15.40 0.00 34.99 3.18
437 438 1.565305 CCGAGCTCATCTGCACTTAC 58.435 55.000 15.40 0.00 34.99 2.34
438 439 0.461548 CCCGAGCTCATCTGCACTTA 59.538 55.000 15.40 0.00 34.99 2.24
439 440 1.220206 CCCGAGCTCATCTGCACTT 59.780 57.895 15.40 0.00 34.99 3.16
440 441 2.898738 CCCGAGCTCATCTGCACT 59.101 61.111 15.40 0.00 34.99 4.40
441 442 2.894387 GCCCGAGCTCATCTGCAC 60.894 66.667 15.40 0.00 35.50 4.57
451 452 1.673168 ATTTGAATCTGAGCCCGAGC 58.327 50.000 0.00 0.00 40.32 5.03
452 453 4.439289 GGAAAATTTGAATCTGAGCCCGAG 60.439 45.833 0.00 0.00 0.00 4.63
453 454 3.443681 GGAAAATTTGAATCTGAGCCCGA 59.556 43.478 0.00 0.00 0.00 5.14
454 455 3.731867 CGGAAAATTTGAATCTGAGCCCG 60.732 47.826 0.00 0.00 0.00 6.13
455 456 3.193479 ACGGAAAATTTGAATCTGAGCCC 59.807 43.478 4.54 0.00 0.00 5.19
456 457 4.082787 TGACGGAAAATTTGAATCTGAGCC 60.083 41.667 4.54 0.00 0.00 4.70
457 458 5.046910 TGACGGAAAATTTGAATCTGAGC 57.953 39.130 4.54 0.00 0.00 4.26
458 459 9.229784 CATTATGACGGAAAATTTGAATCTGAG 57.770 33.333 4.54 0.00 0.00 3.35
459 460 8.739039 ACATTATGACGGAAAATTTGAATCTGA 58.261 29.630 0.00 0.00 0.00 3.27
460 461 8.915871 ACATTATGACGGAAAATTTGAATCTG 57.084 30.769 0.00 0.00 0.00 2.90
461 462 9.573133 GAACATTATGACGGAAAATTTGAATCT 57.427 29.630 0.00 0.00 0.00 2.40
462 463 9.573133 AGAACATTATGACGGAAAATTTGAATC 57.427 29.630 0.00 0.00 0.00 2.52
468 469 8.840321 CCTGATAGAACATTATGACGGAAAATT 58.160 33.333 0.00 0.00 0.00 1.82
469 470 8.210946 TCCTGATAGAACATTATGACGGAAAAT 58.789 33.333 0.00 0.00 0.00 1.82
470 471 7.561251 TCCTGATAGAACATTATGACGGAAAA 58.439 34.615 0.00 0.00 0.00 2.29
471 472 7.119709 TCCTGATAGAACATTATGACGGAAA 57.880 36.000 0.00 0.00 0.00 3.13
472 473 6.239317 CCTCCTGATAGAACATTATGACGGAA 60.239 42.308 0.00 0.00 0.00 4.30
473 474 5.243954 CCTCCTGATAGAACATTATGACGGA 59.756 44.000 0.00 0.00 0.00 4.69
474 475 5.011125 ACCTCCTGATAGAACATTATGACGG 59.989 44.000 0.00 0.00 0.00 4.79
475 476 6.090483 ACCTCCTGATAGAACATTATGACG 57.910 41.667 0.00 0.00 0.00 4.35
487 488 1.407979 ACGCGGTAAACCTCCTGATAG 59.592 52.381 12.47 0.00 0.00 2.08
551 557 2.380084 TGTCGCCAAATCCTAGTGTC 57.620 50.000 0.00 0.00 0.00 3.67
626 659 8.575589 CCATTATAGATACAGATAGCTAGCAGG 58.424 40.741 18.83 5.46 32.91 4.85
724 767 0.610232 GTGCAGGCCTGAACCATTCT 60.610 55.000 37.21 0.00 32.90 2.40
739 782 8.492415 AGTAGTATAATCAAATCTAGGGTGCA 57.508 34.615 0.00 0.00 0.00 4.57
807 859 4.855715 TGTGGAAACAAACAAACTGACA 57.144 36.364 0.00 0.00 46.06 3.58
988 1048 0.911525 AGCTCCATGTGTAGCCCTGT 60.912 55.000 7.98 0.00 39.64 4.00
1079 1139 2.171489 GACAAAGGACGTCAAGCGCC 62.171 60.000 18.91 0.00 46.11 6.53
1175 2660 2.044352 TGTCGATGAGGGCCTCGA 60.044 61.111 27.58 19.65 41.27 4.04
1664 3153 0.392193 GGACATCACAGGGCTGTCAG 60.392 60.000 8.88 0.00 42.83 3.51
1701 3190 9.275572 ACATAGTAGAATGGGTACTTTTTAGGA 57.724 33.333 0.00 0.00 32.81 2.94
1787 3277 0.958822 GGTGCCGTTTGGTTTCAGAT 59.041 50.000 0.00 0.00 37.67 2.90
2077 3573 1.094073 ATGCTCACGCTGCTGGATTC 61.094 55.000 0.00 0.00 36.97 2.52
2339 3838 7.275123 ACGATAGAATGAACTCGTTAAAGTTCC 59.725 37.037 14.57 3.35 45.93 3.62
2369 3868 1.802508 GCAGACACAAGTTTGCCAACC 60.803 52.381 0.00 0.00 46.83 3.77
2428 3927 4.651778 ACTATTAAGTCTGCCAAGTTGCA 58.348 39.130 0.00 0.00 39.37 4.08
2429 3928 5.412904 AGAACTATTAAGTCTGCCAAGTTGC 59.587 40.000 0.00 0.00 33.75 4.17
2479 3978 7.502561 AGATTCAGCCAAGTTTAGTTAGTTTGT 59.497 33.333 0.00 0.00 0.00 2.83
2480 3979 7.875971 AGATTCAGCCAAGTTTAGTTAGTTTG 58.124 34.615 0.00 0.00 0.00 2.93
2488 3987 7.965107 GTGAACATAAGATTCAGCCAAGTTTAG 59.035 37.037 0.00 0.00 36.76 1.85
2499 3998 5.014123 AGGAACTGGGTGAACATAAGATTCA 59.986 40.000 0.00 0.00 37.18 2.57
2536 4035 1.675310 CACCTGCCAGATTTGCCGA 60.675 57.895 0.00 0.00 0.00 5.54
2557 4057 2.169832 ATTGACACTCGACAACAGGG 57.830 50.000 0.00 0.00 29.67 4.45
2582 4082 7.891561 TGACCCAAAAACTTCCATAAGTATTG 58.108 34.615 0.00 0.00 45.37 1.90
2671 4189 5.833667 TCAACCAGTTAGATAGACGATGGAT 59.166 40.000 0.00 0.00 0.00 3.41
2678 4196 5.675538 AGGCAATCAACCAGTTAGATAGAC 58.324 41.667 0.00 0.00 0.00 2.59
2681 4199 5.647658 CACAAGGCAATCAACCAGTTAGATA 59.352 40.000 0.00 0.00 0.00 1.98
2701 4219 0.175302 CAAGCAGCCCACAAACACAA 59.825 50.000 0.00 0.00 0.00 3.33
2702 4220 0.969917 ACAAGCAGCCCACAAACACA 60.970 50.000 0.00 0.00 0.00 3.72
2717 4235 2.724977 TCTCGGTCTACAAGCACAAG 57.275 50.000 0.00 0.00 0.00 3.16
2746 4264 1.549203 GCTCCCTTCCTTTTCATGCA 58.451 50.000 0.00 0.00 0.00 3.96
2755 4273 1.003573 ATTCCTCCGCTCCCTTCCT 59.996 57.895 0.00 0.00 0.00 3.36
2827 4345 4.034048 CGGTAATAGATTGGCTCACACAAC 59.966 45.833 0.00 0.00 0.00 3.32
2874 4394 1.083489 ACAACGCAACATCCATACCG 58.917 50.000 0.00 0.00 0.00 4.02
2879 4399 3.696898 GTTTAACACAACGCAACATCCA 58.303 40.909 0.00 0.00 0.00 3.41
2889 4409 4.240883 CGAGCCTATCGTTTAACACAAC 57.759 45.455 0.00 0.00 46.62 3.32
2909 4429 6.020440 CACGTTACACCCTATACATGTTTACG 60.020 42.308 2.30 3.09 38.27 3.18
2936 4456 4.495828 CACATACATAGTCGAGACAACACG 59.504 45.833 5.99 0.00 0.00 4.49
2942 4462 3.036633 CGCACACATACATAGTCGAGAC 58.963 50.000 0.00 0.00 0.00 3.36
2945 4465 2.162809 ACACGCACACATACATAGTCGA 59.837 45.455 0.00 0.00 0.00 4.20
2946 4466 2.526077 ACACGCACACATACATAGTCG 58.474 47.619 0.00 0.00 0.00 4.18
2951 4471 5.656480 TGTAGATTACACGCACACATACAT 58.344 37.500 0.00 0.00 32.89 2.29
2958 4478 4.109766 GCAGTATGTAGATTACACGCACA 58.890 43.478 0.00 0.00 42.23 4.57
2978 4498 1.066143 GCTCTAGCCTAACAACCTGCA 60.066 52.381 0.00 0.00 34.31 4.41
3040 4560 3.719268 ACAGAGGGCACATGTTATTGA 57.281 42.857 0.00 0.00 0.00 2.57
3048 4568 4.018960 ACAGAAAGATTACAGAGGGCACAT 60.019 41.667 0.00 0.00 0.00 3.21
3052 4572 2.680339 GCACAGAAAGATTACAGAGGGC 59.320 50.000 0.00 0.00 0.00 5.19
3084 4604 0.737715 GCAGTTCTGCAGGGACGTAG 60.738 60.000 15.13 9.65 34.41 3.51
3128 4648 9.479549 TGGATAATTTTGAGGAAAGCTCTAATT 57.520 29.630 0.00 0.00 0.00 1.40
3131 4651 7.503566 CCATGGATAATTTTGAGGAAAGCTCTA 59.496 37.037 5.56 0.00 0.00 2.43
3148 4668 3.836365 TGAAGACATCGCCATGGATAA 57.164 42.857 18.40 0.00 33.82 1.75
3149 4669 3.134623 ACTTGAAGACATCGCCATGGATA 59.865 43.478 18.40 1.65 33.82 2.59
3152 4672 1.742761 ACTTGAAGACATCGCCATGG 58.257 50.000 7.63 7.63 33.82 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.