AutoCloner

Multiple sequence alignment - TraesCS3B01G605800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G605800	chr3B	100.000	2459	0	0	1	2459	824381028	824378570	0.000000e+00	4542.0
1	TraesCS3B01G605800	chr3B	91.077	1356	81	11	900	2225	825572437	825571092	0.000000e+00	1797.0
2	TraesCS3B01G605800	chr3B	88.763	792	71	10	828	1614	813307440	813306662	0.000000e+00	953.0
3	TraesCS3B01G605800	chr3B	87.563	796	60	17	843	1613	818053034	818052253	0.000000e+00	885.0
4	TraesCS3B01G605800	chr3B	86.700	812	69	19	828	1614	809059333	809058536	0.000000e+00	865.0
5	TraesCS3B01G605800	chr3B	88.666	697	52	13	927	1614	27487928	27487250	0.000000e+00	824.0
6	TraesCS3B01G605800	chr3B	88.154	650	58	11	828	1477	788510444	788511074	0.000000e+00	756.0
7	TraesCS3B01G605800	chr3B	90.155	579	48	7	900	1477	788406275	788405705	0.000000e+00	745.0
8	TraesCS3B01G605800	chr3B	95.607	387	15	2	222	607	813308311	813307926	9.660000e-174	619.0
9	TraesCS3B01G605800	chr3B	94.373	391	19	3	219	607	764446023	764445634	4.530000e-167	597.0
10	TraesCS3B01G605800	chr3B	95.582	249	11	0	2211	2459	825552046	825551798	1.370000e-107	399.0
11	TraesCS3B01G605800	chr3B	94.309	246	14	0	355	600	809061969	809061724	6.420000e-101	377.0
12	TraesCS3B01G605800	chr3B	92.149	242	9	2	596	828	809059611	809059371	1.410000e-87	333.0
13	TraesCS3B01G605800	chr3B	90.393	229	12	5	596	815	764445615	764445388	2.390000e-75	292.0
14	TraesCS3B01G605800	chr3B	93.617	188	3	1	650	828	813307665	813307478	3.120000e-69	272.0
15	TraesCS3B01G605800	chr3B	90.206	194	9	2	25	218	813308539	813308356	6.790000e-61	244.0
16	TraesCS3B01G605800	chr3B	85.377	212	17	6	626	828	818053302	818053096	8.910000e-50	207.0
17	TraesCS3B01G605800	chr3B	92.517	147	7	1	680	826	825572690	825572548	8.910000e-50	207.0
18	TraesCS3B01G605800	chr3B	93.382	136	8	1	45	180	764446401	764446267	1.490000e-47	200.0
19	TraesCS3B01G605800	chr3B	89.933	149	11	1	680	828	788406549	788406405	3.230000e-44	189.0
20	TraesCS3B01G605800	chr3B	89.333	150	12	4	680	829	813269772	813269627	4.180000e-43	185.0
21	TraesCS3B01G605800	chr3B	99.000	100	1	0	219	318	809062070	809061971	1.940000e-41	180.0
22	TraesCS3B01G605800	chr3B	90.323	62	1	1	596	652	813307907	813307846	2.620000e-10	76.8
23	TraesCS3B01G605800	chr3B	100.000	29	0	0	162	190	28709710	28709682	1.000000e-03	54.7
24	TraesCS3B01G605800	chrUn	91.176	680	54	1	1780	2459	232147001	232146328	0.000000e+00	918.0
25	TraesCS3B01G605800	chrUn	91.176	680	54	1	1780	2459	291111646	291112319	0.000000e+00	918.0
26	TraesCS3B01G605800	chrUn	94.444	594	23	4	900	1485	232147592	232147001	0.000000e+00	905.0
27	TraesCS3B01G605800	chrUn	94.040	604	24	6	890	1485	291111047	291111646	0.000000e+00	905.0
28	TraesCS3B01G605800	chrUn	89.643	589	50	8	890	1477	364044820	364045398	0.000000e+00	739.0
29	TraesCS3B01G605800	chrUn	94.373	391	19	3	219	607	232153230	232152841	4.530000e-167	597.0
30	TraesCS3B01G605800	chrUn	94.373	391	19	3	219	607	237972269	237971880	4.530000e-167	597.0
31	TraesCS3B01G605800	chrUn	87.848	395	23	6	828	1200	342674231	342673840	8.070000e-120	440.0
32	TraesCS3B01G605800	chrUn	87.595	395	24	6	828	1200	388618017	388618408	3.760000e-118	435.0
33	TraesCS3B01G605800	chrUn	90.393	229	12	5	596	815	232152822	232152595	2.390000e-75	292.0
34	TraesCS3B01G605800	chrUn	90.393	229	12	5	596	815	237971861	237971634	2.390000e-75	292.0
35	TraesCS3B01G605800	chrUn	93.382	136	8	1	45	180	232153608	232153474	1.490000e-47	200.0
36	TraesCS3B01G605800	chrUn	93.382	136	8	1	45	180	237972647	237972513	1.490000e-47	200.0
37	TraesCS3B01G605800	chr7D	75.294	170	29	10	2233	2401	116691758	116691915	4.390000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G605800	chr3B	824378570	824381028	2458	True	4542.00	4542	100.0000	1	2459	1	chr3B.!!$R4	2458
1	TraesCS3B01G605800	chr3B	825571092	825572690	1598	True	1002.00	1797	91.7970	680	2225	2	chr3B.!!$R11	1545
2	TraesCS3B01G605800	chr3B	27487250	27487928	678	True	824.00	824	88.6660	927	1614	1	chr3B.!!$R1	687
3	TraesCS3B01G605800	chr3B	788510444	788511074	630	False	756.00	756	88.1540	828	1477	1	chr3B.!!$F1	649
4	TraesCS3B01G605800	chr3B	818052253	818053302	1049	True	546.00	885	86.4700	626	1613	2	chr3B.!!$R10	987
5	TraesCS3B01G605800	chr3B	788405705	788406549	844	True	467.00	745	90.0440	680	1477	2	chr3B.!!$R7	797
6	TraesCS3B01G605800	chr3B	809058536	809062070	3534	True	438.75	865	93.0395	219	1614	4	chr3B.!!$R8	1395
7	TraesCS3B01G605800	chr3B	813306662	813308539	1877	True	432.96	953	91.7032	25	1614	5	chr3B.!!$R9	1589
8	TraesCS3B01G605800	chr3B	764445388	764446401	1013	True	363.00	597	92.7160	45	815	3	chr3B.!!$R6	770
9	TraesCS3B01G605800	chrUn	232146328	232147592	1264	True	911.50	918	92.8100	900	2459	2	chrUn.!!$R2	1559
10	TraesCS3B01G605800	chrUn	291111047	291112319	1272	False	911.50	918	92.6080	890	2459	2	chrUn.!!$F3	1569
11	TraesCS3B01G605800	chrUn	364044820	364045398	578	False	739.00	739	89.6430	890	1477	1	chrUn.!!$F1	587
12	TraesCS3B01G605800	chrUn	232152595	232153608	1013	True	363.00	597	92.7160	45	815	3	chrUn.!!$R3	770
13	TraesCS3B01G605800	chrUn	237971634	237972647	1013	True	363.00	597	92.7160	45	815	3	chrUn.!!$R4	770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
77	78	0.450184	ATTTTGCATGGCGTACGTCC	59.55	50.0	18.57	18.32	0.0	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1766	4389	0.099436	GCGCCAACACCAGAATGATC	59.901	55.0	0.0	0.0	39.69	2.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.192000	CGCTGTTGTGGGCTCTAG	57.808	61.111	0.00	0.00	0.00	2.43
18	19	1.448540	CGCTGTTGTGGGCTCTAGG	60.449	63.158	0.00	0.00	0.00	3.02
19	20	1.746991	GCTGTTGTGGGCTCTAGGC	60.747	63.158	0.00	0.00	40.90	3.93
49	50	7.939039	TGTATTGGTACTAGCTTAGGTACGTAT	59.061	37.037	0.00	12.30	39.13	3.06
77	78	0.450184	ATTTTGCATGGCGTACGTCC	59.550	50.000	18.57	18.32	0.00	4.79
93	94	1.423395	GTCCACAAGCTTGTCTCTCG	58.577	55.000	28.97	16.95	39.91	4.04
101	102	5.234329	CACAAGCTTGTCTCTCGAAACTTTA	59.766	40.000	28.97	0.00	39.91	1.85
191	353	4.039730	ACTCATGACTACATACATGGCTCC	59.960	45.833	0.00	0.00	42.53	4.70
207	369	1.336125	GCTCCTGCATGATTTAGGCAC	59.664	52.381	0.00	0.00	41.85	5.01
396	602	5.058008	CGTGAAACAAATAAGCGATGTGTTC	59.942	40.000	9.77	5.82	44.01	3.18
397	603	5.342259	GTGAAACAAATAAGCGATGTGTTCC	59.658	40.000	9.77	0.12	44.01	3.62
481	687	2.270352	TCCATCAAACGCTGAAGGTT	57.730	45.000	8.67	0.00	42.53	3.50
532	739	8.823584	TTACAGTTACAACACGTAAAATTGTG	57.176	30.769	13.77	0.00	41.73	3.33
583	790	1.388547	GCCGGCATCCTATGTCAAAA	58.611	50.000	24.80	0.00	33.60	2.44
767	3287	1.672356	CATTCCATCCGCCGGATCC	60.672	63.158	17.39	0.00	40.98	3.36
911	3498	2.094390	CCCAACCTGCATCAATCAACAG	60.094	50.000	0.00	0.00	0.00	3.16
1028	3616	0.389817	CAGGCGATCGAGGTGAACAA	60.390	55.000	21.57	0.00	0.00	2.83
1356	3946	0.040692	TCGACAAGAACGACCACTCG	60.041	55.000	0.00	0.00	46.06	4.18
1437	4028	1.048601	AGGAGCAGGACGACTTCAAA	58.951	50.000	0.00	0.00	0.00	2.69
1535	4139	2.936498	ACTAACGCTGAATACCACATGC	59.064	45.455	0.00	0.00	0.00	4.06
1634	4243	0.107017	AGGGCTGGATCCACGATTTG	60.107	55.000	11.44	0.49	0.00	2.32
1643	4252	0.724549	TCCACGATTTGAAATCGCCG	59.275	50.000	32.64	24.89	44.60	6.46
1672	4281	2.872245	GGCTTCTATTGCAGCGTTATCA	59.128	45.455	0.00	0.00	36.85	2.15
1678	4287	2.917701	TTGCAGCGTTATCACCAATG	57.082	45.000	0.00	0.00	0.00	2.82
1680	4289	0.589729	GCAGCGTTATCACCAATGCG	60.590	55.000	0.00	0.00	43.70	4.73
1683	4292	2.032054	CAGCGTTATCACCAATGCGAAT	59.968	45.455	0.00	0.00	43.70	3.34
1719	4341	5.772825	TCATGCCTAAATTTATCTGCCAC	57.227	39.130	0.00	0.00	0.00	5.01
1726	4348	6.238759	GCCTAAATTTATCTGCCACGATTTCT	60.239	38.462	0.00	0.00	0.00	2.52
1750	4372	9.730420	TCTTTTCTAAACAATTTTAGTGAGTGC	57.270	29.630	4.51	0.00	43.34	4.40
1751	4373	9.736023	CTTTTCTAAACAATTTTAGTGAGTGCT	57.264	29.630	4.51	0.00	43.34	4.40
1765	4388	2.703536	TGAGTGCTTAGTGGTTCTTCCA	59.296	45.455	0.00	0.00	45.01	3.53
1793	4416	4.947147	GTGTTGGCGCAGGTCCCA	62.947	66.667	10.83	0.00	0.00	4.37
1828	4451	2.620115	ACTCGTTGAGTACTTTCCGACA	59.380	45.455	0.00	0.00	41.51	4.35
1866	4489	0.584396	GTCACGCACATTCACGGAAA	59.416	50.000	0.00	0.00	0.00	3.13
1900	4523	1.035139	GGGATCAAAGCGGATGCAAT	58.965	50.000	0.00	0.00	46.23	3.56
1925	4548	0.105778	TTGTGTGTGCTCGTCCATGA	59.894	50.000	0.00	0.00	0.00	3.07
1967	4590	1.201181	CGACTGGAGAAGAGGTCTGTG	59.799	57.143	0.00	0.00	36.41	3.66
1968	4591	2.520069	GACTGGAGAAGAGGTCTGTGA	58.480	52.381	0.00	0.00	36.41	3.58
1987	4610	0.106918	AGTGGCCGGAAGAACAACAA	60.107	50.000	5.05	0.00	0.00	2.83
1988	4611	0.310854	GTGGCCGGAAGAACAACAAG	59.689	55.000	5.05	0.00	0.00	3.16
1989	4612	0.106918	TGGCCGGAAGAACAACAAGT	60.107	50.000	5.05	0.00	0.00	3.16
1990	4613	1.029681	GGCCGGAAGAACAACAAGTT	58.970	50.000	5.05	0.00	44.93	2.66
1994	4617	3.852205	GCCGGAAGAACAACAAGTTAAGC	60.852	47.826	5.05	0.00	41.51	3.09
1995	4618	3.314080	CCGGAAGAACAACAAGTTAAGCA	59.686	43.478	0.00	0.00	41.51	3.91
2036	4659	0.905357	CAGAAGGGAAGACGGACCAT	59.095	55.000	0.00	0.00	0.00	3.55
2068	4691	3.716195	CGGAGGTGGTGATGGGCA	61.716	66.667	0.00	0.00	0.00	5.36
2069	4692	2.763215	GGAGGTGGTGATGGGCAA	59.237	61.111	0.00	0.00	0.00	4.52
2070	4693	1.379044	GGAGGTGGTGATGGGCAAG	60.379	63.158	0.00	0.00	0.00	4.01
2071	4694	2.036256	AGGTGGTGATGGGCAAGC	59.964	61.111	0.00	0.00	0.00	4.01
2072	4695	2.036256	GGTGGTGATGGGCAAGCT	59.964	61.111	0.00	0.00	0.00	3.74
2073	4696	1.607467	GGTGGTGATGGGCAAGCTT	60.607	57.895	0.00	0.00	0.00	3.74
2112	4735	0.614415	CCTGCATGGGGTTTTGCCTA	60.614	55.000	0.00	0.00	38.08	3.93
2133	4756	3.345808	GCTTGCGTGCGGACAAGA	61.346	61.111	8.11	0.00	44.89	3.02
2177	4800	1.226746	CGAACAGACAAACAGGGACC	58.773	55.000	0.00	0.00	0.00	4.46
2205	4828	4.122776	GTCGCATGTAGAGGAAATGACAT	58.877	43.478	0.00	0.00	32.78	3.06
2216	4839	2.817258	GGAAATGACATCACCGAAACCA	59.183	45.455	0.00	0.00	0.00	3.67
2239	4862	2.011947	CATCTACGACCGGTCACTACA	58.988	52.381	32.80	13.46	0.00	2.74
2241	4864	2.079158	TCTACGACCGGTCACTACAAG	58.921	52.381	32.80	17.49	0.00	3.16
2260	4883	9.520515	ACTACAAGAAATCTGTTAATCAATGGT	57.479	29.630	0.00	0.00	0.00	3.55
2295	4918	3.552604	ACATATGTGTGCAAAACCGTC	57.447	42.857	7.78	0.00	37.14	4.79
2324	4947	3.953201	GTCCGTGACGTATTAGGGG	57.047	57.895	3.64	0.00	0.00	4.79
2343	4966	6.590656	AGGGGATTAGGAATTTGTCATGTA	57.409	37.500	0.00	0.00	0.00	2.29
2348	4971	9.739276	GGGATTAGGAATTTGTCATGTATATCA	57.261	33.333	0.00	0.00	0.00	2.15
2372	4995	3.006940	TCATAATTTGACCTCGGTGCAC	58.993	45.455	8.80	8.80	0.00	4.57
2448	5071	6.963049	ACAATTTACTGTGAGATAACGGTC	57.037	37.500	0.00	0.00	40.22	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.448540	CCTAGAGCCCACAACAGCG	60.449	63.158	0.00	0.00	0.00	5.18
1	2	1.746991	GCCTAGAGCCCACAACAGC	60.747	63.158	0.00	0.00	34.35	4.40
2	3	4.625800	GCCTAGAGCCCACAACAG	57.374	61.111	0.00	0.00	34.35	3.16
11	12	1.486726	ACCAATACACAGGCCTAGAGC	59.513	52.381	3.98	0.00	42.60	4.09
12	13	3.961408	AGTACCAATACACAGGCCTAGAG	59.039	47.826	3.98	0.00	33.30	2.43
13	14	3.990369	AGTACCAATACACAGGCCTAGA	58.010	45.455	3.98	0.00	33.30	2.43
14	15	4.262079	GCTAGTACCAATACACAGGCCTAG	60.262	50.000	3.98	3.33	34.95	3.02
15	16	3.640029	GCTAGTACCAATACACAGGCCTA	59.360	47.826	3.98	0.00	33.30	3.93
16	17	2.434702	GCTAGTACCAATACACAGGCCT	59.565	50.000	0.00	0.00	33.30	5.19
17	18	2.434702	AGCTAGTACCAATACACAGGCC	59.565	50.000	0.00	0.00	33.30	5.19
18	19	3.821421	AGCTAGTACCAATACACAGGC	57.179	47.619	0.00	0.00	33.30	4.85
19	20	5.363005	ACCTAAGCTAGTACCAATACACAGG	59.637	44.000	0.00	0.00	33.30	4.00
20	21	6.466885	ACCTAAGCTAGTACCAATACACAG	57.533	41.667	0.00	0.00	33.30	3.66
21	22	6.038603	CGTACCTAAGCTAGTACCAATACACA	59.961	42.308	13.20	0.00	36.34	3.72
22	23	6.038714	ACGTACCTAAGCTAGTACCAATACAC	59.961	42.308	13.20	0.00	36.34	2.90
23	24	6.122277	ACGTACCTAAGCTAGTACCAATACA	58.878	40.000	13.20	0.00	36.34	2.29
77	78	3.126831	AGTTTCGAGAGACAAGCTTGTG	58.873	45.455	35.67	20.61	42.43	3.33
140	141	2.428890	TGTGTGACCCAAACAAATGGAC	59.571	45.455	0.00	0.00	43.54	4.02
191	353	3.539253	GCGTGCCTAAATCATGCAG	57.461	52.632	0.00	0.00	43.80	4.41
207	369	1.289109	CTGTTAGGGTGGAACGTGCG	61.289	60.000	0.00	0.00	38.12	5.34
353	559	4.881273	TCACGCCAATATTTCATAGCAGTT	59.119	37.500	0.00	0.00	0.00	3.16
396	602	1.399714	TCACACTGCTCGTATAGGGG	58.600	55.000	0.00	0.00	0.00	4.79
397	603	3.130516	TCTTTCACACTGCTCGTATAGGG	59.869	47.826	0.00	0.00	0.00	3.53
448	654	5.551233	GTTTGATGGATTCGATGATAGGGA	58.449	41.667	0.00	0.00	0.00	4.20
481	687	1.975327	CGACTGCTTCCTCCCTTGA	59.025	57.895	0.00	0.00	0.00	3.02
532	739	3.113745	CCCAAGACGGATGCATGC	58.886	61.111	11.82	11.82	36.56	4.06
576	783	5.238432	ACGAACATCTAACTGCATTTTGACA	59.762	36.000	3.26	0.00	0.00	3.58
583	790	6.818644	AGAAATACACGAACATCTAACTGCAT	59.181	34.615	0.00	0.00	0.00	3.96
767	3287	1.100510	TCGTGTCGAGTATTGGGAGG	58.899	55.000	0.00	0.00	0.00	4.30
911	3498	1.043116	GCTTATTGGTCTTGGGGGCC	61.043	60.000	0.00	0.00	0.00	5.80
1356	3946	2.416893	GGGCGTCTTGAAACTGATCTTC	59.583	50.000	0.00	0.00	0.00	2.87
1521	4125	5.745294	GCAAATAAGTGCATGTGGTATTCAG	59.255	40.000	0.00	0.00	44.29	3.02
1580	4189	4.872691	CAGAGCAGAGTATAACAACTTGGG	59.127	45.833	0.00	0.00	0.00	4.12
1582	4191	5.349817	CACCAGAGCAGAGTATAACAACTTG	59.650	44.000	0.00	0.00	0.00	3.16
1628	4237	1.651132	CGCCGGCGATTTCAAATCG	60.651	57.895	44.86	25.25	42.83	3.34
1643	4252	1.405105	TGCAATAGAAGCCATTTCGCC	59.595	47.619	0.00	0.00	40.86	5.54
1651	4260	2.872245	TGATAACGCTGCAATAGAAGCC	59.128	45.455	0.00	0.00	44.14	4.35
1672	4281	0.381801	GATTGCCGATTCGCATTGGT	59.618	50.000	3.13	0.00	38.87	3.67
1746	4368	2.972713	TCTGGAAGAACCACTAAGCACT	59.027	45.455	0.00	0.00	42.31	4.40
1765	4388	1.742761	CGCCAACACCAGAATGATCT	58.257	50.000	0.00	0.00	39.69	2.75
1766	4389	0.099436	GCGCCAACACCAGAATGATC	59.901	55.000	0.00	0.00	39.69	2.92
1828	4451	3.376859	TGACTTGAAAGTTCACGTGCATT	59.623	39.130	11.67	2.10	39.41	3.56
1866	4489	1.474077	GATCCCTTGTGCTTCGCAAAT	59.526	47.619	0.00	0.00	41.47	2.32
1900	4523	1.663643	GACGAGCACACACAACTTTCA	59.336	47.619	0.00	0.00	0.00	2.69
1945	4568	1.742831	CAGACCTCTTCTCCAGTCGAG	59.257	57.143	0.00	0.00	40.30	4.04
1967	4590	0.534203	TGTTGTTCTTCCGGCCACTC	60.534	55.000	2.24	0.00	0.00	3.51
1968	4591	0.106918	TTGTTGTTCTTCCGGCCACT	60.107	50.000	2.24	0.00	0.00	4.00
1987	4610	4.079970	GAGCCTAACCCTTTTGCTTAACT	58.920	43.478	0.00	0.00	31.23	2.24
1988	4611	4.079970	AGAGCCTAACCCTTTTGCTTAAC	58.920	43.478	0.00	0.00	31.23	2.01
1989	4612	4.382386	AGAGCCTAACCCTTTTGCTTAA	57.618	40.909	0.00	0.00	31.23	1.85
1990	4613	4.079253	CAAGAGCCTAACCCTTTTGCTTA	58.921	43.478	0.00	0.00	31.23	3.09
1994	4617	2.558359	CCACAAGAGCCTAACCCTTTTG	59.442	50.000	0.00	0.00	32.48	2.44
1995	4618	2.177016	ACCACAAGAGCCTAACCCTTTT	59.823	45.455	0.00	0.00	0.00	2.27
2036	4659	0.824109	CTCCGGTATGGCTTGTCTCA	59.176	55.000	0.00	0.00	37.80	3.27
2061	4684	2.119009	GGCCTTAAGCTTGCCCATC	58.881	57.895	13.98	0.00	43.05	3.51
2068	4691	2.365582	CACGTAATGGGCCTTAAGCTT	58.634	47.619	4.53	3.48	43.05	3.74
2069	4692	1.408266	CCACGTAATGGGCCTTAAGCT	60.408	52.381	4.53	0.00	45.95	3.74
2070	4693	1.021968	CCACGTAATGGGCCTTAAGC	58.978	55.000	4.53	0.00	45.95	3.09
2150	4773	1.771073	TTTGTCTGTTCGGCAGCACG	61.771	55.000	0.00	0.00	44.66	5.34
2154	4777	0.588252	CCTGTTTGTCTGTTCGGCAG	59.412	55.000	2.20	2.20	46.34	4.85
2177	4800	2.210961	TCCTCTACATGCGACGTCTAG	58.789	52.381	14.70	8.14	0.00	2.43
2205	4828	3.061322	CGTAGATGTTTGGTTTCGGTGA	58.939	45.455	0.00	0.00	0.00	4.02
2216	4839	1.891150	AGTGACCGGTCGTAGATGTTT	59.109	47.619	28.70	4.18	40.67	2.83
2239	4862	8.599624	ATCCACCATTGATTAACAGATTTCTT	57.400	30.769	0.00	0.00	0.00	2.52
2241	4864	8.469200	TGAATCCACCATTGATTAACAGATTTC	58.531	33.333	0.00	0.00	32.74	2.17
2260	4883	4.584874	ACATATGTGACGGTTTGAATCCA	58.415	39.130	7.78	0.00	0.00	3.41
2292	4915	2.732094	GGACGACCAACCACGACG	60.732	66.667	0.00	0.00	35.97	5.12
2295	4918	3.033764	CACGGACGACCAACCACG	61.034	66.667	4.48	0.00	35.59	4.94
2315	4938	9.014297	CATGACAAATTCCTAATCCCCTAATAC	57.986	37.037	0.00	0.00	0.00	1.89
2316	4939	8.732854	ACATGACAAATTCCTAATCCCCTAATA	58.267	33.333	0.00	0.00	0.00	0.98
2320	4943	5.472301	ACATGACAAATTCCTAATCCCCT	57.528	39.130	0.00	0.00	0.00	4.79
2360	4983	1.448540	CATGGAGTGCACCGAGGTC	60.449	63.158	14.63	3.59	0.00	3.85
2364	4987	2.261361	CGTCATGGAGTGCACCGA	59.739	61.111	14.63	2.65	0.00	4.69
2410	5033	7.062605	ACAGTAAATTGTGACGGTAAAGTATCG	59.937	37.037	0.00	0.00	38.49	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.