Multiple sequence alignment - TraesCS3B01G605500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G605500 chr3B 100.000 2997 0 0 1 2997 823986059 823983063 0 5535
1 TraesCS3B01G605500 chr3B 93.333 2010 94 9 605 2611 825314517 825312545 0 2933
2 TraesCS3B01G605500 chr3B 93.237 2011 92 12 606 2611 825495203 825497174 0 2920
3 TraesCS3B01G605500 chr3B 92.864 1009 16 12 1 982 824028208 824027229 0 1413
4 TraesCS3B01G605500 chrUn 92.839 2011 102 11 605 2611 43084010 43082038 0 2878


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G605500 chr3B 823983063 823986059 2996 True 5535 5535 100.000 1 2997 1 chr3B.!!$R1 2996
1 TraesCS3B01G605500 chr3B 825312545 825314517 1972 True 2933 2933 93.333 605 2611 1 chr3B.!!$R3 2006
2 TraesCS3B01G605500 chr3B 825495203 825497174 1971 False 2920 2920 93.237 606 2611 1 chr3B.!!$F1 2005
3 TraesCS3B01G605500 chr3B 824027229 824028208 979 True 1413 1413 92.864 1 982 1 chr3B.!!$R2 981
4 TraesCS3B01G605500 chrUn 43082038 43084010 1972 True 2878 2878 92.839 605 2611 1 chrUn.!!$R1 2006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 751 1.595311 ATGCACATACCTTCCCTCCA 58.405 50.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2694 2726 0.033366 TGAAACTCGCTAGTGCTGCA 59.967 50.0 0.0 0.0 35.62 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.457603 GGCACATAGATGACGATCTAGTCT 59.542 45.833 0.00 0.00 43.13 3.24
84 85 7.984422 AGAATTGATTGTCATTACTGTGTCA 57.016 32.000 0.00 0.00 0.00 3.58
147 149 2.871096 AGCCGGGAGTAAATTCACAA 57.129 45.000 2.18 0.00 0.00 3.33
244 272 1.825474 TCCAGCAAGGAGTACTAGTGC 59.175 52.381 5.39 14.19 43.07 4.40
253 281 4.413760 AGGAGTACTAGTGCACAACCTAA 58.586 43.478 21.04 0.00 0.00 2.69
254 282 4.463186 AGGAGTACTAGTGCACAACCTAAG 59.537 45.833 21.04 8.49 0.00 2.18
343 371 3.190744 GTGCTCATCTGATGGCCAATATG 59.809 47.826 10.96 11.44 0.00 1.78
379 407 3.320610 TCTGATCTTCGAGGGGATTCT 57.679 47.619 0.00 0.00 0.00 2.40
434 462 3.914364 GCAACGAAATCCTTTAGCTGTTG 59.086 43.478 0.00 0.00 38.68 3.33
723 751 1.595311 ATGCACATACCTTCCCTCCA 58.405 50.000 0.00 0.00 0.00 3.86
801 829 2.420547 GCACTCCATGTATGCCTTCTCA 60.421 50.000 2.47 0.00 33.06 3.27
976 1004 4.326766 CAACACAACAGCGGCCGG 62.327 66.667 29.38 14.21 0.00 6.13
988 1016 3.741476 GGCCGGAAGCAAGTGCAG 61.741 66.667 5.05 0.00 46.50 4.41
1012 1040 5.050769 GGTCTCTGCAACATGTCGTATTATG 60.051 44.000 0.00 0.00 0.00 1.90
1041 1069 1.884075 ATTGGTCAGGTGCGCTACGA 61.884 55.000 9.73 0.00 0.00 3.43
1044 1072 1.372499 GTCAGGTGCGCTACGACAA 60.372 57.895 9.73 0.00 0.00 3.18
1050 1078 0.165944 GTGCGCTACGACAAAGCATT 59.834 50.000 9.73 0.00 40.08 3.56
1052 1080 1.265635 TGCGCTACGACAAAGCATTTT 59.734 42.857 9.73 0.00 40.08 1.82
1074 1102 2.147436 TTTTTGAAATGGAGGCGTGC 57.853 45.000 0.00 0.00 0.00 5.34
1075 1103 0.316841 TTTTGAAATGGAGGCGTGCC 59.683 50.000 1.67 1.67 0.00 5.01
1076 1104 0.825425 TTTGAAATGGAGGCGTGCCA 60.825 50.000 14.29 0.00 40.24 4.92
1080 1108 3.001514 ATGGAGGCGTGCCATTCT 58.998 55.556 14.29 0.00 43.42 2.40
1081 1109 1.304282 ATGGAGGCGTGCCATTCTT 59.696 52.632 14.29 0.00 43.42 2.52
1082 1110 0.323725 ATGGAGGCGTGCCATTCTTT 60.324 50.000 14.29 0.00 43.42 2.52
1151 1179 1.602311 GGTGATCCCATGCATGTCTC 58.398 55.000 24.58 17.13 0.00 3.36
1163 1191 6.236409 CCATGCATGTCTCTCCACTAATTAT 58.764 40.000 24.58 0.00 0.00 1.28
1225 1253 5.995282 TGTTGAAGAATATTATAGGGCACGG 59.005 40.000 0.00 0.00 0.00 4.94
1303 1331 2.341101 GGCGGAGAAGACGAGGACA 61.341 63.158 0.00 0.00 0.00 4.02
1321 1349 1.979693 AGCTCAGGTGTCCTCGACC 60.980 63.158 0.00 0.00 0.00 4.79
1465 1493 2.036089 CGATAGGTACCAAGAGGAAGCC 59.964 54.545 15.94 0.00 38.69 4.35
1546 1574 3.118775 TGCTAATGAACACCGCTGATACT 60.119 43.478 0.00 0.00 0.00 2.12
1563 1591 1.523758 ACTTACCAAGAAGCGGCAAG 58.476 50.000 1.45 0.00 33.72 4.01
1573 1601 0.244721 AAGCGGCAAGGAAGCAAATC 59.755 50.000 1.45 0.00 35.83 2.17
1586 1614 0.179153 GCAAATCAAGGAGAAGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
1587 1615 1.167851 CAAATCAAGGAGAAGGCGCA 58.832 50.000 10.83 0.00 0.00 6.09
1601 1629 3.385384 CGCAGGAGCTGGAGGACA 61.385 66.667 0.00 0.00 39.10 4.02
1788 1816 2.887152 CAAAGAACTTGGAGTTGGAGGG 59.113 50.000 0.00 0.00 38.80 4.30
1901 1929 5.165961 AGAAATCTTGACGGAATTGGAGA 57.834 39.130 0.00 0.00 0.00 3.71
1925 1953 5.024785 CCTTAAGATGAAGGTGGAGGTAC 57.975 47.826 3.36 0.00 41.09 3.34
1963 1991 5.163478 GGATTTGATGGAGGGTGAAAATGAG 60.163 44.000 0.00 0.00 0.00 2.90
1966 1994 4.592942 TGATGGAGGGTGAAAATGAGAAG 58.407 43.478 0.00 0.00 0.00 2.85
1968 1996 2.095461 GGAGGGTGAAAATGAGAAGCC 58.905 52.381 0.00 0.00 0.00 4.35
2048 2076 3.968265 ACATGCAATTAGGTACCTTGCT 58.032 40.909 28.66 16.50 44.29 3.91
2050 2078 4.675510 CATGCAATTAGGTACCTTGCTTG 58.324 43.478 28.66 27.32 44.29 4.01
2130 2158 2.093869 CCATCAAGCATTTGGTGAAGGG 60.094 50.000 0.68 0.00 46.27 3.95
2131 2159 2.380064 TCAAGCATTTGGTGAAGGGT 57.620 45.000 0.00 0.00 34.97 4.34
2132 2160 3.517296 TCAAGCATTTGGTGAAGGGTA 57.483 42.857 0.00 0.00 34.97 3.69
2133 2161 3.838565 TCAAGCATTTGGTGAAGGGTAA 58.161 40.909 0.00 0.00 34.97 2.85
2134 2162 4.219115 TCAAGCATTTGGTGAAGGGTAAA 58.781 39.130 0.00 0.00 34.97 2.01
2135 2163 4.651503 TCAAGCATTTGGTGAAGGGTAAAA 59.348 37.500 0.00 0.00 34.97 1.52
2136 2164 4.871933 AGCATTTGGTGAAGGGTAAAAG 57.128 40.909 0.00 0.00 0.00 2.27
2137 2165 4.223144 AGCATTTGGTGAAGGGTAAAAGT 58.777 39.130 0.00 0.00 0.00 2.66
2138 2166 5.390387 AGCATTTGGTGAAGGGTAAAAGTA 58.610 37.500 0.00 0.00 0.00 2.24
2139 2167 5.836358 AGCATTTGGTGAAGGGTAAAAGTAA 59.164 36.000 0.00 0.00 0.00 2.24
2140 2168 6.496911 AGCATTTGGTGAAGGGTAAAAGTAAT 59.503 34.615 0.00 0.00 0.00 1.89
2141 2169 6.589907 GCATTTGGTGAAGGGTAAAAGTAATG 59.410 38.462 0.00 0.00 0.00 1.90
2142 2170 6.658188 TTTGGTGAAGGGTAAAAGTAATGG 57.342 37.500 0.00 0.00 0.00 3.16
2149 2177 4.416516 AGGGTAAAAGTAATGGCAAGCTT 58.583 39.130 0.00 0.00 0.00 3.74
2168 2196 3.504520 GCTTTGGTTATCGGAGGTTTTGA 59.495 43.478 0.00 0.00 0.00 2.69
2174 2202 4.879545 GGTTATCGGAGGTTTTGATAGCAA 59.120 41.667 0.00 0.00 30.28 3.91
2235 2263 6.931840 AGAGGCTTAAGAAGAATATTTAGCCG 59.068 38.462 6.67 0.00 42.82 5.52
2412 2441 0.179100 ATGCATGGTTCTCCGAGTCG 60.179 55.000 5.29 5.29 36.30 4.18
2466 2496 6.365839 CCTTTTATGTATTGCATACTCAGCG 58.634 40.000 0.00 0.00 39.57 5.18
2469 2499 8.601845 TTTTATGTATTGCATACTCAGCGTAT 57.398 30.769 0.00 0.00 39.57 3.06
2509 2541 6.554334 TTGTTTTCTCGAAGAAATACCTGG 57.446 37.500 9.75 0.00 43.06 4.45
2561 2593 6.435591 TGGTAGACAGATGGAATAGAGCATAG 59.564 42.308 0.00 0.00 0.00 2.23
2629 2661 6.641176 TTTTCAAAAGAAACGAGAAAAGCC 57.359 33.333 0.00 0.00 34.40 4.35
2630 2662 3.947626 TCAAAAGAAACGAGAAAAGCCG 58.052 40.909 0.00 0.00 0.00 5.52
2631 2663 3.375922 TCAAAAGAAACGAGAAAAGCCGT 59.624 39.130 0.00 0.00 41.14 5.68
2632 2664 4.571580 TCAAAAGAAACGAGAAAAGCCGTA 59.428 37.500 0.00 0.00 38.13 4.02
2633 2665 5.064962 TCAAAAGAAACGAGAAAAGCCGTAA 59.935 36.000 0.00 0.00 38.13 3.18
2634 2666 4.727235 AAGAAACGAGAAAAGCCGTAAG 57.273 40.909 0.00 0.00 38.13 2.34
2648 2680 0.792031 CGTAAGGTTTACACGGCACC 59.208 55.000 0.00 0.00 32.19 5.01
2649 2681 1.873069 CGTAAGGTTTACACGGCACCA 60.873 52.381 0.00 0.00 32.43 4.17
2650 2682 2.220313 GTAAGGTTTACACGGCACCAA 58.780 47.619 0.00 0.00 32.43 3.67
2651 2683 1.765230 AAGGTTTACACGGCACCAAA 58.235 45.000 0.00 0.00 32.43 3.28
2652 2684 1.765230 AGGTTTACACGGCACCAAAA 58.235 45.000 0.00 0.00 32.43 2.44
2653 2685 2.100989 AGGTTTACACGGCACCAAAAA 58.899 42.857 0.00 0.00 32.43 1.94
2670 2702 3.874392 AAAAATCTTCGGGCTCCATTG 57.126 42.857 0.00 0.00 0.00 2.82
2671 2703 2.514458 AAATCTTCGGGCTCCATTGT 57.486 45.000 0.00 0.00 0.00 2.71
2672 2704 2.514458 AATCTTCGGGCTCCATTGTT 57.486 45.000 0.00 0.00 0.00 2.83
2673 2705 2.044123 ATCTTCGGGCTCCATTGTTC 57.956 50.000 0.00 0.00 0.00 3.18
2674 2706 0.984230 TCTTCGGGCTCCATTGTTCT 59.016 50.000 0.00 0.00 0.00 3.01
2675 2707 1.351017 TCTTCGGGCTCCATTGTTCTT 59.649 47.619 0.00 0.00 0.00 2.52
2676 2708 1.740025 CTTCGGGCTCCATTGTTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
2677 2709 0.391130 TCGGGCTCCATTGTTCTTCG 60.391 55.000 0.00 0.00 0.00 3.79
2678 2710 1.803289 GGGCTCCATTGTTCTTCGC 59.197 57.895 0.00 0.00 0.00 4.70
2679 2711 0.678048 GGGCTCCATTGTTCTTCGCT 60.678 55.000 0.00 0.00 0.00 4.93
2680 2712 0.729690 GGCTCCATTGTTCTTCGCTC 59.270 55.000 0.00 0.00 0.00 5.03
2681 2713 1.677217 GGCTCCATTGTTCTTCGCTCT 60.677 52.381 0.00 0.00 0.00 4.09
2682 2714 1.663135 GCTCCATTGTTCTTCGCTCTC 59.337 52.381 0.00 0.00 0.00 3.20
2683 2715 2.676463 GCTCCATTGTTCTTCGCTCTCT 60.676 50.000 0.00 0.00 0.00 3.10
2684 2716 2.928757 CTCCATTGTTCTTCGCTCTCTG 59.071 50.000 0.00 0.00 0.00 3.35
2685 2717 2.562738 TCCATTGTTCTTCGCTCTCTGA 59.437 45.455 0.00 0.00 0.00 3.27
2686 2718 3.006859 TCCATTGTTCTTCGCTCTCTGAA 59.993 43.478 0.00 0.00 0.00 3.02
2687 2719 3.937706 CCATTGTTCTTCGCTCTCTGAAT 59.062 43.478 0.00 0.00 0.00 2.57
2688 2720 4.394300 CCATTGTTCTTCGCTCTCTGAATT 59.606 41.667 0.00 0.00 0.00 2.17
2689 2721 5.106396 CCATTGTTCTTCGCTCTCTGAATTT 60.106 40.000 0.00 0.00 0.00 1.82
2690 2722 6.376978 CATTGTTCTTCGCTCTCTGAATTTT 58.623 36.000 0.00 0.00 0.00 1.82
2691 2723 5.348418 TGTTCTTCGCTCTCTGAATTTTG 57.652 39.130 0.00 0.00 0.00 2.44
2692 2724 4.154717 GTTCTTCGCTCTCTGAATTTTGC 58.845 43.478 0.00 0.00 0.00 3.68
2693 2725 3.668447 TCTTCGCTCTCTGAATTTTGCT 58.332 40.909 0.00 0.00 0.00 3.91
2694 2726 4.067896 TCTTCGCTCTCTGAATTTTGCTT 58.932 39.130 0.00 0.00 0.00 3.91
2695 2727 3.818961 TCGCTCTCTGAATTTTGCTTG 57.181 42.857 0.00 0.00 0.00 4.01
2696 2728 2.095567 TCGCTCTCTGAATTTTGCTTGC 60.096 45.455 0.00 0.00 0.00 4.01
2697 2729 2.351060 CGCTCTCTGAATTTTGCTTGCA 60.351 45.455 0.00 0.00 0.00 4.08
2698 2730 3.243336 GCTCTCTGAATTTTGCTTGCAG 58.757 45.455 0.00 0.00 0.00 4.41
2699 2731 3.243336 CTCTCTGAATTTTGCTTGCAGC 58.757 45.455 0.00 1.70 42.82 5.25
2716 2748 3.516578 GCACTAGCGAGTTTCAGGT 57.483 52.632 0.00 0.00 31.73 4.00
2717 2749 1.351153 GCACTAGCGAGTTTCAGGTC 58.649 55.000 0.00 0.00 31.73 3.85
2718 2750 1.997669 CACTAGCGAGTTTCAGGTCC 58.002 55.000 0.00 0.00 31.73 4.46
2719 2751 1.272490 CACTAGCGAGTTTCAGGTCCA 59.728 52.381 0.00 0.00 31.73 4.02
2720 2752 1.546476 ACTAGCGAGTTTCAGGTCCAG 59.454 52.381 0.00 0.00 28.61 3.86
2721 2753 1.819288 CTAGCGAGTTTCAGGTCCAGA 59.181 52.381 0.00 0.00 0.00 3.86
2722 2754 1.048601 AGCGAGTTTCAGGTCCAGAA 58.951 50.000 0.00 0.00 0.00 3.02
2723 2755 1.149148 GCGAGTTTCAGGTCCAGAAC 58.851 55.000 0.00 0.00 0.00 3.01
2724 2756 1.270358 GCGAGTTTCAGGTCCAGAACT 60.270 52.381 0.00 0.52 0.00 3.01
2725 2757 2.029290 GCGAGTTTCAGGTCCAGAACTA 60.029 50.000 0.00 0.00 0.00 2.24
2726 2758 3.368531 GCGAGTTTCAGGTCCAGAACTAT 60.369 47.826 0.00 0.00 0.00 2.12
2727 2759 4.425520 CGAGTTTCAGGTCCAGAACTATC 58.574 47.826 0.00 0.00 0.00 2.08
2728 2760 4.082190 CGAGTTTCAGGTCCAGAACTATCA 60.082 45.833 0.00 0.00 0.00 2.15
2729 2761 5.394663 CGAGTTTCAGGTCCAGAACTATCAT 60.395 44.000 0.00 0.00 0.00 2.45
2730 2762 6.380079 AGTTTCAGGTCCAGAACTATCATT 57.620 37.500 0.00 0.00 0.00 2.57
2731 2763 6.784031 AGTTTCAGGTCCAGAACTATCATTT 58.216 36.000 0.00 0.00 0.00 2.32
2732 2764 6.656693 AGTTTCAGGTCCAGAACTATCATTTG 59.343 38.462 0.00 0.00 0.00 2.32
2733 2765 5.102953 TCAGGTCCAGAACTATCATTTGG 57.897 43.478 0.00 0.00 0.00 3.28
2734 2766 4.536090 TCAGGTCCAGAACTATCATTTGGT 59.464 41.667 0.00 0.00 0.00 3.67
2735 2767 5.724370 TCAGGTCCAGAACTATCATTTGGTA 59.276 40.000 0.00 0.00 0.00 3.25
2736 2768 6.386927 TCAGGTCCAGAACTATCATTTGGTAT 59.613 38.462 0.00 0.00 0.00 2.73
2737 2769 6.708054 CAGGTCCAGAACTATCATTTGGTATC 59.292 42.308 0.00 0.00 0.00 2.24
2738 2770 6.386927 AGGTCCAGAACTATCATTTGGTATCA 59.613 38.462 0.00 0.00 0.00 2.15
2739 2771 6.708054 GGTCCAGAACTATCATTTGGTATCAG 59.292 42.308 0.00 0.00 0.00 2.90
2740 2772 7.419057 GGTCCAGAACTATCATTTGGTATCAGA 60.419 40.741 0.00 0.00 0.00 3.27
2741 2773 7.655328 GTCCAGAACTATCATTTGGTATCAGAG 59.345 40.741 0.00 0.00 0.00 3.35
2742 2774 7.345653 TCCAGAACTATCATTTGGTATCAGAGT 59.654 37.037 0.00 0.00 0.00 3.24
2743 2775 7.440556 CCAGAACTATCATTTGGTATCAGAGTG 59.559 40.741 0.00 0.00 0.00 3.51
2744 2776 7.984050 CAGAACTATCATTTGGTATCAGAGTGT 59.016 37.037 0.00 0.00 0.00 3.55
2745 2777 8.543774 AGAACTATCATTTGGTATCAGAGTGTT 58.456 33.333 0.00 0.00 0.00 3.32
2746 2778 8.723942 AACTATCATTTGGTATCAGAGTGTTC 57.276 34.615 0.00 0.00 0.00 3.18
2747 2779 6.980978 ACTATCATTTGGTATCAGAGTGTTCG 59.019 38.462 0.00 0.00 0.00 3.95
2748 2780 5.147330 TCATTTGGTATCAGAGTGTTCGT 57.853 39.130 0.00 0.00 0.00 3.85
2749 2781 4.929211 TCATTTGGTATCAGAGTGTTCGTG 59.071 41.667 0.00 0.00 0.00 4.35
2750 2782 4.594123 TTTGGTATCAGAGTGTTCGTGA 57.406 40.909 0.00 0.00 0.00 4.35
2751 2783 3.850122 TGGTATCAGAGTGTTCGTGAG 57.150 47.619 0.00 0.00 0.00 3.51
2752 2784 2.492088 TGGTATCAGAGTGTTCGTGAGG 59.508 50.000 0.00 0.00 0.00 3.86
2753 2785 2.159226 GGTATCAGAGTGTTCGTGAGGG 60.159 54.545 0.00 0.00 0.00 4.30
2754 2786 1.924731 ATCAGAGTGTTCGTGAGGGA 58.075 50.000 0.00 0.00 0.00 4.20
2755 2787 0.959553 TCAGAGTGTTCGTGAGGGAC 59.040 55.000 0.00 0.00 0.00 4.46
2756 2788 0.038159 CAGAGTGTTCGTGAGGGACC 60.038 60.000 0.00 0.00 0.00 4.46
2757 2789 0.469331 AGAGTGTTCGTGAGGGACCA 60.469 55.000 0.00 0.00 0.00 4.02
2758 2790 0.608640 GAGTGTTCGTGAGGGACCAT 59.391 55.000 0.00 0.00 0.00 3.55
2759 2791 0.321671 AGTGTTCGTGAGGGACCATG 59.678 55.000 0.00 0.00 0.00 3.66
2760 2792 0.034896 GTGTTCGTGAGGGACCATGT 59.965 55.000 0.00 0.00 0.00 3.21
2761 2793 0.320374 TGTTCGTGAGGGACCATGTC 59.680 55.000 0.00 0.00 0.00 3.06
2762 2794 0.736325 GTTCGTGAGGGACCATGTCG 60.736 60.000 0.00 0.00 32.65 4.35
2763 2795 0.896479 TTCGTGAGGGACCATGTCGA 60.896 55.000 0.00 0.00 32.65 4.20
2764 2796 1.139734 CGTGAGGGACCATGTCGAG 59.860 63.158 0.00 0.00 32.65 4.04
2765 2797 1.153549 GTGAGGGACCATGTCGAGC 60.154 63.158 0.00 0.00 32.65 5.03
2766 2798 2.105128 GAGGGACCATGTCGAGCG 59.895 66.667 0.00 0.00 32.65 5.03
2767 2799 3.432051 GAGGGACCATGTCGAGCGG 62.432 68.421 0.00 0.00 32.65 5.52
2768 2800 4.530857 GGGACCATGTCGAGCGGG 62.531 72.222 0.00 0.00 32.65 6.13
2769 2801 3.458163 GGACCATGTCGAGCGGGA 61.458 66.667 3.39 0.00 32.65 5.14
2770 2802 2.105128 GACCATGTCGAGCGGGAG 59.895 66.667 3.39 0.00 0.00 4.30
2782 2814 4.436998 CGGGAGCAGGACACGGAC 62.437 72.222 0.00 0.00 0.00 4.79
2783 2815 4.436998 GGGAGCAGGACACGGACG 62.437 72.222 0.00 0.00 0.00 4.79
2807 2839 3.991051 CCGACACCGTCACCTGCT 61.991 66.667 0.00 0.00 32.09 4.24
2808 2840 2.734723 CGACACCGTCACCTGCTG 60.735 66.667 0.00 0.00 32.09 4.41
2809 2841 2.734591 GACACCGTCACCTGCTGA 59.265 61.111 0.00 0.00 32.09 4.26
2810 2842 1.293498 GACACCGTCACCTGCTGAT 59.707 57.895 0.00 0.00 32.09 2.90
2811 2843 0.737715 GACACCGTCACCTGCTGATC 60.738 60.000 0.00 0.00 32.09 2.92
2812 2844 1.293179 CACCGTCACCTGCTGATCA 59.707 57.895 0.00 0.00 0.00 2.92
2813 2845 0.107993 CACCGTCACCTGCTGATCAT 60.108 55.000 0.00 0.00 0.00 2.45
2814 2846 0.176680 ACCGTCACCTGCTGATCATC 59.823 55.000 0.00 0.00 0.00 2.92
2815 2847 0.873312 CCGTCACCTGCTGATCATCG 60.873 60.000 0.00 0.00 0.00 3.84
2816 2848 1.485838 CGTCACCTGCTGATCATCGC 61.486 60.000 0.00 0.00 0.00 4.58
2817 2849 0.179089 GTCACCTGCTGATCATCGCT 60.179 55.000 8.27 0.00 0.00 4.93
2818 2850 0.103755 TCACCTGCTGATCATCGCTC 59.896 55.000 8.27 0.00 0.00 5.03
2819 2851 0.104487 CACCTGCTGATCATCGCTCT 59.896 55.000 8.27 0.00 0.00 4.09
2820 2852 1.339291 CACCTGCTGATCATCGCTCTA 59.661 52.381 8.27 0.00 0.00 2.43
2821 2853 2.029200 CACCTGCTGATCATCGCTCTAT 60.029 50.000 8.27 0.00 0.00 1.98
2822 2854 2.029200 ACCTGCTGATCATCGCTCTATG 60.029 50.000 8.27 0.00 0.00 2.23
2823 2855 2.230750 CCTGCTGATCATCGCTCTATGA 59.769 50.000 8.27 0.00 40.07 2.15
2824 2856 3.244156 CTGCTGATCATCGCTCTATGAC 58.756 50.000 8.27 0.00 38.65 3.06
2825 2857 2.889678 TGCTGATCATCGCTCTATGACT 59.110 45.455 8.27 0.00 38.65 3.41
2826 2858 3.057666 TGCTGATCATCGCTCTATGACTC 60.058 47.826 8.27 0.00 38.65 3.36
2827 2859 3.673052 GCTGATCATCGCTCTATGACTCC 60.673 52.174 0.00 0.00 38.65 3.85
2828 2860 3.490348 TGATCATCGCTCTATGACTCCA 58.510 45.455 0.00 0.00 38.65 3.86
2829 2861 4.085009 TGATCATCGCTCTATGACTCCAT 58.915 43.478 0.00 0.00 38.65 3.41
2830 2862 4.157472 TGATCATCGCTCTATGACTCCATC 59.843 45.833 0.00 0.00 38.65 3.51
2831 2863 2.485814 TCATCGCTCTATGACTCCATCG 59.514 50.000 0.00 0.00 34.31 3.84
2832 2864 0.593618 TCGCTCTATGACTCCATCGC 59.406 55.000 0.00 0.00 34.31 4.58
2833 2865 0.727457 CGCTCTATGACTCCATCGCG 60.727 60.000 0.00 0.00 37.56 5.87
2834 2866 1.006314 GCTCTATGACTCCATCGCGC 61.006 60.000 0.00 0.00 34.31 6.86
2835 2867 0.312102 CTCTATGACTCCATCGCGCA 59.688 55.000 8.75 0.00 34.31 6.09
2836 2868 0.030773 TCTATGACTCCATCGCGCAC 59.969 55.000 8.75 0.00 34.31 5.34
2837 2869 0.249031 CTATGACTCCATCGCGCACA 60.249 55.000 8.75 0.00 34.31 4.57
2838 2870 0.527600 TATGACTCCATCGCGCACAC 60.528 55.000 8.75 0.00 34.31 3.82
2839 2871 2.432456 GACTCCATCGCGCACACA 60.432 61.111 8.75 0.00 0.00 3.72
2840 2872 2.433145 ACTCCATCGCGCACACAG 60.433 61.111 8.75 0.00 0.00 3.66
2841 2873 3.857854 CTCCATCGCGCACACAGC 61.858 66.667 8.75 0.00 40.87 4.40
2858 2890 4.514577 CGCCAGAGCCGTGGTAGG 62.515 72.222 3.96 0.00 40.09 3.18
2859 2891 3.075005 GCCAGAGCCGTGGTAGGA 61.075 66.667 3.96 0.00 40.09 2.94
2860 2892 3.082579 GCCAGAGCCGTGGTAGGAG 62.083 68.421 3.96 0.00 40.09 3.69
2861 2893 1.682684 CCAGAGCCGTGGTAGGAGT 60.683 63.158 0.00 0.00 32.32 3.85
2862 2894 1.668101 CCAGAGCCGTGGTAGGAGTC 61.668 65.000 0.00 0.00 32.32 3.36
2863 2895 1.749638 AGAGCCGTGGTAGGAGTCG 60.750 63.158 0.00 0.00 0.00 4.18
2864 2896 3.412879 GAGCCGTGGTAGGAGTCGC 62.413 68.421 0.00 0.00 0.00 5.19
2865 2897 4.849329 GCCGTGGTAGGAGTCGCG 62.849 72.222 0.00 0.00 36.74 5.87
2866 2898 3.437795 CCGTGGTAGGAGTCGCGT 61.438 66.667 5.77 0.00 35.43 6.01
2867 2899 2.564975 CGTGGTAGGAGTCGCGTT 59.435 61.111 5.77 0.00 32.96 4.84
2868 2900 1.513586 CGTGGTAGGAGTCGCGTTC 60.514 63.158 5.77 5.34 32.96 3.95
2869 2901 1.513586 GTGGTAGGAGTCGCGTTCG 60.514 63.158 5.77 0.00 0.00 3.95
2870 2902 1.968017 TGGTAGGAGTCGCGTTCGT 60.968 57.895 5.77 9.73 36.96 3.85
2871 2903 1.226239 GGTAGGAGTCGCGTTCGTC 60.226 63.158 5.77 0.00 36.96 4.20
2872 2904 1.579626 GTAGGAGTCGCGTTCGTCG 60.580 63.158 5.77 0.00 43.12 5.12
2873 2905 2.029288 TAGGAGTCGCGTTCGTCGT 61.029 57.895 5.77 3.27 42.13 4.34
2882 2914 4.364409 GTTCGTCGTGGCGGCAAC 62.364 66.667 15.50 8.72 0.00 4.17
2883 2915 4.893601 TTCGTCGTGGCGGCAACA 62.894 61.111 15.50 0.00 0.00 3.33
2884 2916 4.893601 TCGTCGTGGCGGCAACAA 62.894 61.111 15.50 0.00 0.00 2.83
2885 2917 4.659874 CGTCGTGGCGGCAACAAC 62.660 66.667 15.50 11.34 0.00 3.32
2886 2918 3.578272 GTCGTGGCGGCAACAACA 61.578 61.111 15.50 0.00 0.00 3.33
2887 2919 2.593148 TCGTGGCGGCAACAACAT 60.593 55.556 15.50 0.00 0.00 2.71
2888 2920 2.126888 CGTGGCGGCAACAACATC 60.127 61.111 15.50 0.00 0.00 3.06
2889 2921 2.126888 GTGGCGGCAACAACATCG 60.127 61.111 15.50 0.00 0.00 3.84
2890 2922 2.593148 TGGCGGCAACAACATCGT 60.593 55.556 10.22 0.00 0.00 3.73
2891 2923 2.175811 GGCGGCAACAACATCGTC 59.824 61.111 3.07 0.00 0.00 4.20
2892 2924 2.202171 GCGGCAACAACATCGTCG 60.202 61.111 0.00 0.00 0.00 5.12
2893 2925 2.950172 GCGGCAACAACATCGTCGT 61.950 57.895 0.00 0.00 0.00 4.34
2894 2926 1.129809 CGGCAACAACATCGTCGTC 59.870 57.895 0.00 0.00 0.00 4.20
2895 2927 1.495951 GGCAACAACATCGTCGTCC 59.504 57.895 0.00 0.00 0.00 4.79
2896 2928 1.225376 GGCAACAACATCGTCGTCCA 61.225 55.000 0.00 0.00 0.00 4.02
2897 2929 0.110823 GCAACAACATCGTCGTCCAC 60.111 55.000 0.00 0.00 0.00 4.02
2898 2930 1.213491 CAACAACATCGTCGTCCACA 58.787 50.000 0.00 0.00 0.00 4.17
2899 2931 1.595328 CAACAACATCGTCGTCCACAA 59.405 47.619 0.00 0.00 0.00 3.33
2900 2932 1.497991 ACAACATCGTCGTCCACAAG 58.502 50.000 0.00 0.00 0.00 3.16
2901 2933 0.163788 CAACATCGTCGTCCACAAGC 59.836 55.000 0.00 0.00 0.00 4.01
2902 2934 1.282248 AACATCGTCGTCCACAAGCG 61.282 55.000 0.00 0.00 0.00 4.68
2903 2935 2.809601 ATCGTCGTCCACAAGCGC 60.810 61.111 0.00 0.00 0.00 5.92
2904 2936 3.567478 ATCGTCGTCCACAAGCGCA 62.567 57.895 11.47 0.00 0.00 6.09
2905 2937 4.059459 CGTCGTCCACAAGCGCAC 62.059 66.667 11.47 0.00 0.00 5.34
2906 2938 4.059459 GTCGTCCACAAGCGCACG 62.059 66.667 11.47 10.10 0.00 5.34
2909 2941 4.012895 GTCCACAAGCGCACGGTG 62.013 66.667 11.47 14.51 0.00 4.94
2912 2944 4.671549 CACAAGCGCACGGTGCAG 62.672 66.667 30.23 22.90 45.36 4.41
2922 2954 4.147449 CGGTGCAGGAGCGGATCA 62.147 66.667 5.49 0.00 46.23 2.92
2923 2955 2.507944 GGTGCAGGAGCGGATCAT 59.492 61.111 0.00 0.00 46.23 2.45
2924 2956 1.596477 GGTGCAGGAGCGGATCATC 60.596 63.158 0.00 0.00 46.23 2.92
2925 2957 1.144716 GTGCAGGAGCGGATCATCA 59.855 57.895 0.00 0.00 46.23 3.07
2926 2958 1.144716 TGCAGGAGCGGATCATCAC 59.855 57.895 0.00 0.00 46.23 3.06
2927 2959 1.596477 GCAGGAGCGGATCATCACC 60.596 63.158 0.00 0.00 0.00 4.02
2937 2969 2.905075 GGATCATCACCGACATCAACA 58.095 47.619 0.00 0.00 0.00 3.33
2938 2970 2.609459 GGATCATCACCGACATCAACAC 59.391 50.000 0.00 0.00 0.00 3.32
2939 2971 1.708822 TCATCACCGACATCAACACG 58.291 50.000 0.00 0.00 0.00 4.49
2946 2978 2.124903 CCGACATCAACACGGTATAGC 58.875 52.381 0.00 0.00 41.47 2.97
2947 2979 2.124903 CGACATCAACACGGTATAGCC 58.875 52.381 0.00 0.00 0.00 3.93
2948 2980 2.480587 CGACATCAACACGGTATAGCCA 60.481 50.000 0.00 0.00 36.97 4.75
2949 2981 3.527533 GACATCAACACGGTATAGCCAA 58.472 45.455 0.00 0.00 36.97 4.52
2950 2982 4.127171 GACATCAACACGGTATAGCCAAT 58.873 43.478 0.00 0.00 36.97 3.16
2951 2983 3.876914 ACATCAACACGGTATAGCCAATG 59.123 43.478 0.00 0.00 36.97 2.82
2952 2984 2.285083 TCAACACGGTATAGCCAATGC 58.715 47.619 0.00 0.00 36.97 3.56
2962 2994 4.120331 GCCAATGCTCACCGCCAC 62.120 66.667 0.00 0.00 38.05 5.01
2963 2995 3.803082 CCAATGCTCACCGCCACG 61.803 66.667 0.00 0.00 38.05 4.94
2964 2996 2.741985 CAATGCTCACCGCCACGA 60.742 61.111 0.00 0.00 38.05 4.35
2965 2997 2.031919 AATGCTCACCGCCACGAA 59.968 55.556 0.00 0.00 38.05 3.85
2966 2998 2.325082 AATGCTCACCGCCACGAAC 61.325 57.895 0.00 0.00 38.05 3.95
2967 2999 2.731691 AATGCTCACCGCCACGAACT 62.732 55.000 0.00 0.00 38.05 3.01
2968 3000 1.884075 ATGCTCACCGCCACGAACTA 61.884 55.000 0.00 0.00 38.05 2.24
2969 3001 2.092882 GCTCACCGCCACGAACTAC 61.093 63.158 0.00 0.00 0.00 2.73
2980 3012 3.618774 CGAACTACGTCTAGTGGGC 57.381 57.895 0.00 0.00 35.43 5.36
2981 3013 1.093159 CGAACTACGTCTAGTGGGCT 58.907 55.000 0.00 0.00 35.43 5.19
2982 3014 1.063764 CGAACTACGTCTAGTGGGCTC 59.936 57.143 0.00 0.00 35.43 4.70
2983 3015 2.367486 GAACTACGTCTAGTGGGCTCT 58.633 52.381 0.00 0.00 35.43 4.09
2984 3016 3.539604 GAACTACGTCTAGTGGGCTCTA 58.460 50.000 0.00 0.00 35.43 2.43
2985 3017 3.196939 ACTACGTCTAGTGGGCTCTAG 57.803 52.381 0.00 9.70 38.83 2.43
2986 3018 2.504996 ACTACGTCTAGTGGGCTCTAGT 59.495 50.000 0.00 0.00 38.66 2.57
2987 3019 1.752683 ACGTCTAGTGGGCTCTAGTG 58.247 55.000 13.60 11.03 38.66 2.74
2988 3020 1.281287 ACGTCTAGTGGGCTCTAGTGA 59.719 52.381 13.60 0.00 38.66 3.41
2989 3021 2.092321 ACGTCTAGTGGGCTCTAGTGAT 60.092 50.000 13.60 2.75 38.66 3.06
2990 3022 2.292016 CGTCTAGTGGGCTCTAGTGATG 59.708 54.545 13.60 2.74 38.66 3.07
2991 3023 2.035321 GTCTAGTGGGCTCTAGTGATGC 59.965 54.545 13.60 0.00 38.66 3.91
2992 3024 2.034878 CTAGTGGGCTCTAGTGATGCA 58.965 52.381 0.00 0.00 34.44 3.96
2993 3025 0.829333 AGTGGGCTCTAGTGATGCAG 59.171 55.000 0.00 0.00 0.00 4.41
2994 3026 0.826715 GTGGGCTCTAGTGATGCAGA 59.173 55.000 0.00 0.00 0.00 4.26
2995 3027 1.415659 GTGGGCTCTAGTGATGCAGAT 59.584 52.381 0.00 0.00 0.00 2.90
2996 3028 1.690893 TGGGCTCTAGTGATGCAGATC 59.309 52.381 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.500785 TGACACAGTAATGACAATCAATTCTAA 57.499 29.630 0.00 0.00 0.00 2.10
147 149 8.771920 TCAGTACATCGACTTGATACAAAAAT 57.228 30.769 0.00 0.00 34.83 1.82
209 212 3.635591 TGCTGGATGTACTCTGATCTCA 58.364 45.455 0.00 0.00 0.00 3.27
253 281 0.608640 GTCACTCACGATTGGACCCT 59.391 55.000 0.00 0.00 0.00 4.34
254 282 0.320374 TGTCACTCACGATTGGACCC 59.680 55.000 0.00 0.00 0.00 4.46
343 371 6.100404 AGATCAGATCATTTCTAGCTGTCC 57.900 41.667 13.14 0.00 31.77 4.02
379 407 0.315568 GGCGTTGTTTACATTGGGCA 59.684 50.000 0.00 0.00 0.00 5.36
434 462 4.036852 GCAGGACTTGATTTTACCCTATGC 59.963 45.833 0.00 0.00 0.00 3.14
723 751 3.071167 GTGTTGGTGAGGGAAGAAGTAGT 59.929 47.826 0.00 0.00 0.00 2.73
801 829 0.984230 TCAATGAGGAAGGCGAAGGT 59.016 50.000 0.00 0.00 0.00 3.50
892 920 1.725665 CATGTGGATGGAAGCTGCG 59.274 57.895 0.00 0.00 0.00 5.18
976 1004 1.155042 CAGAGACCTGCACTTGCTTC 58.845 55.000 2.33 0.00 42.66 3.86
988 1016 2.363788 TACGACATGTTGCAGAGACC 57.636 50.000 13.30 0.00 0.00 3.85
1012 1040 1.067354 ACCTGACCAATACGAACGACC 60.067 52.381 0.14 0.00 0.00 4.79
1056 1084 0.316841 GGCACGCCTCCATTTCAAAA 59.683 50.000 0.00 0.00 0.00 2.44
1058 1086 0.611618 ATGGCACGCCTCCATTTCAA 60.612 50.000 9.92 0.00 41.29 2.69
1059 1087 1.001020 ATGGCACGCCTCCATTTCA 60.001 52.632 9.92 0.00 41.29 2.69
1060 1088 3.924507 ATGGCACGCCTCCATTTC 58.075 55.556 9.92 0.00 41.29 2.17
1063 1091 0.323725 AAAGAATGGCACGCCTCCAT 60.324 50.000 9.92 0.00 45.70 3.41
1064 1092 0.539438 AAAAGAATGGCACGCCTCCA 60.539 50.000 9.92 0.00 38.09 3.86
1065 1093 0.603065 AAAAAGAATGGCACGCCTCC 59.397 50.000 9.92 0.00 36.94 4.30
1066 1094 1.541588 AGAAAAAGAATGGCACGCCTC 59.458 47.619 9.92 0.00 36.94 4.70
1067 1095 1.620822 AGAAAAAGAATGGCACGCCT 58.379 45.000 9.92 0.00 36.94 5.52
1068 1096 2.328473 GAAGAAAAAGAATGGCACGCC 58.672 47.619 0.00 0.00 0.00 5.68
1069 1097 2.288152 TGGAAGAAAAAGAATGGCACGC 60.288 45.455 0.00 0.00 0.00 5.34
1070 1098 3.641437 TGGAAGAAAAAGAATGGCACG 57.359 42.857 0.00 0.00 0.00 5.34
1071 1099 5.138125 TGATGGAAGAAAAAGAATGGCAC 57.862 39.130 0.00 0.00 0.00 5.01
1072 1100 5.804944 TTGATGGAAGAAAAAGAATGGCA 57.195 34.783 0.00 0.00 0.00 4.92
1073 1101 6.875195 TGATTTGATGGAAGAAAAAGAATGGC 59.125 34.615 0.00 0.00 0.00 4.40
1074 1102 8.836268 TTGATTTGATGGAAGAAAAAGAATGG 57.164 30.769 0.00 0.00 0.00 3.16
1076 1104 9.662947 GGATTGATTTGATGGAAGAAAAAGAAT 57.337 29.630 0.00 0.00 0.00 2.40
1077 1105 8.096414 GGGATTGATTTGATGGAAGAAAAAGAA 58.904 33.333 0.00 0.00 0.00 2.52
1078 1106 7.235193 TGGGATTGATTTGATGGAAGAAAAAGA 59.765 33.333 0.00 0.00 0.00 2.52
1079 1107 7.388437 TGGGATTGATTTGATGGAAGAAAAAG 58.612 34.615 0.00 0.00 0.00 2.27
1080 1108 7.313740 TGGGATTGATTTGATGGAAGAAAAA 57.686 32.000 0.00 0.00 0.00 1.94
1081 1109 6.931790 TGGGATTGATTTGATGGAAGAAAA 57.068 33.333 0.00 0.00 0.00 2.29
1082 1110 6.899075 AGATGGGATTGATTTGATGGAAGAAA 59.101 34.615 0.00 0.00 0.00 2.52
1132 1160 1.142465 AGAGACATGCATGGGATCACC 59.858 52.381 29.41 13.80 40.81 4.02
1147 1175 9.722184 GGGGTAATTAATAATTAGTGGAGAGAC 57.278 37.037 5.75 0.00 34.23 3.36
1151 1179 9.877222 AAAGGGGGTAATTAATAATTAGTGGAG 57.123 33.333 5.75 0.00 34.23 3.86
1171 1199 5.242838 TGCAGTGTATGTTTTAGAAAAGGGG 59.757 40.000 0.00 0.00 0.00 4.79
1225 1253 3.629855 GGGAATTTTCTTGCTCTAGCCTC 59.370 47.826 0.00 0.00 41.18 4.70
1291 1319 0.172352 CCTGAGCTGTCCTCGTCTTC 59.828 60.000 0.00 0.00 43.82 2.87
1303 1331 1.979693 GGTCGAGGACACCTGAGCT 60.980 63.158 0.00 0.00 31.76 4.09
1321 1349 1.376466 CCCCAGTGTCAAGACCTGG 59.624 63.158 21.20 21.20 43.39 4.45
1419 1447 0.627451 ATTCATGAAGAGCAGGCCCA 59.373 50.000 14.54 0.00 0.00 5.36
1465 1493 4.248058 CCTTTGCCCTAATTTGCTTCTTG 58.752 43.478 0.00 0.00 0.00 3.02
1546 1574 0.398696 TCCTTGCCGCTTCTTGGTAA 59.601 50.000 0.00 0.00 0.00 2.85
1563 1591 2.165234 GCCTTCTCCTTGATTTGCTTCC 59.835 50.000 0.00 0.00 0.00 3.46
1573 1601 1.449246 CTCCTGCGCCTTCTCCTTG 60.449 63.158 4.18 0.00 0.00 3.61
1586 1614 1.943116 CTCGTGTCCTCCAGCTCCTG 61.943 65.000 0.00 0.00 0.00 3.86
1587 1615 1.680651 CTCGTGTCCTCCAGCTCCT 60.681 63.158 0.00 0.00 0.00 3.69
1601 1629 1.599797 CCAAAACCGCCTTCCTCGT 60.600 57.895 0.00 0.00 0.00 4.18
1788 1816 4.576463 CAGCCTTCACCTTACCATAATCAC 59.424 45.833 0.00 0.00 0.00 3.06
1868 1896 5.233988 CGTCAAGATTTCTTCCTTCTCAGT 58.766 41.667 0.00 0.00 33.11 3.41
1925 1953 2.892852 TCAAATCCTTGTTGGCTTGAGG 59.107 45.455 0.00 0.00 34.55 3.86
1968 1996 1.528586 CTGTGAAAGCGTCCAACTGAG 59.471 52.381 0.00 0.00 0.00 3.35
1972 2000 1.305201 TTCCTGTGAAAGCGTCCAAC 58.695 50.000 0.00 0.00 0.00 3.77
2011 2039 0.106819 ATGTTGAGCATCTCAGCCCC 60.107 55.000 7.94 0.00 41.75 5.80
2013 2041 0.381089 GCATGTTGAGCATCTCAGCC 59.619 55.000 7.94 0.06 41.75 4.85
2048 2076 3.973206 TTTCTACATCCTTCGCCTCAA 57.027 42.857 0.00 0.00 0.00 3.02
2050 2078 4.060038 TGATTTCTACATCCTTCGCCTC 57.940 45.455 0.00 0.00 0.00 4.70
2130 2158 5.538118 ACCAAAGCTTGCCATTACTTTTAC 58.462 37.500 0.00 0.00 30.16 2.01
2131 2159 5.799827 ACCAAAGCTTGCCATTACTTTTA 57.200 34.783 0.00 0.00 30.16 1.52
2132 2160 4.687901 ACCAAAGCTTGCCATTACTTTT 57.312 36.364 0.00 0.00 30.16 2.27
2133 2161 4.687901 AACCAAAGCTTGCCATTACTTT 57.312 36.364 0.00 0.00 32.73 2.66
2134 2162 5.393027 CGATAACCAAAGCTTGCCATTACTT 60.393 40.000 0.00 0.00 0.00 2.24
2135 2163 4.096382 CGATAACCAAAGCTTGCCATTACT 59.904 41.667 0.00 0.00 0.00 2.24
2136 2164 4.351192 CGATAACCAAAGCTTGCCATTAC 58.649 43.478 0.00 0.00 0.00 1.89
2137 2165 3.380004 CCGATAACCAAAGCTTGCCATTA 59.620 43.478 0.00 0.00 0.00 1.90
2138 2166 2.166254 CCGATAACCAAAGCTTGCCATT 59.834 45.455 0.00 0.00 0.00 3.16
2139 2167 1.750778 CCGATAACCAAAGCTTGCCAT 59.249 47.619 0.00 0.00 0.00 4.40
2140 2168 1.173043 CCGATAACCAAAGCTTGCCA 58.827 50.000 0.00 0.00 0.00 4.92
2141 2169 1.401905 CTCCGATAACCAAAGCTTGCC 59.598 52.381 0.00 0.00 0.00 4.52
2142 2170 1.401905 CCTCCGATAACCAAAGCTTGC 59.598 52.381 0.00 0.00 0.00 4.01
2149 2177 4.879545 GCTATCAAAACCTCCGATAACCAA 59.120 41.667 0.00 0.00 0.00 3.67
2195 2223 3.987745 AGCCTCTCAACCTCATCTTCTA 58.012 45.455 0.00 0.00 0.00 2.10
2201 2229 4.780021 TCTTCTTAAGCCTCTCAACCTCAT 59.220 41.667 0.00 0.00 0.00 2.90
2241 2269 8.522830 GGATGTAATGAATGTTCTCAAGGAAAA 58.477 33.333 0.00 0.00 35.51 2.29
2244 2272 6.962182 AGGATGTAATGAATGTTCTCAAGGA 58.038 36.000 0.00 0.00 0.00 3.36
2291 2319 2.094752 CCCATTTCCGACACCAATGTTC 60.095 50.000 0.00 0.00 39.95 3.18
2294 2323 0.173255 GCCCATTTCCGACACCAATG 59.827 55.000 0.00 0.00 0.00 2.82
2303 2332 4.654091 ATCAAATGTAAGCCCATTTCCG 57.346 40.909 4.20 0.00 41.79 4.30
2387 2416 4.774726 ACTCGGAGAACCATGCATATATCT 59.225 41.667 12.86 2.72 34.09 1.98
2466 2496 6.219302 ACAAGCTACAAAACACGTACATAC 57.781 37.500 0.00 0.00 0.00 2.39
2469 2499 5.548706 AAACAAGCTACAAAACACGTACA 57.451 34.783 0.00 0.00 0.00 2.90
2479 2509 6.671614 TTTCTTCGAGAAAACAAGCTACAA 57.328 33.333 7.35 0.00 40.89 2.41
2509 2541 5.760253 ACCACTTCATATATGTTGCTACAGC 59.240 40.000 12.42 0.00 37.77 4.40
2561 2593 7.929941 AGATCATTAAACAAAGAGTTCCCTC 57.070 36.000 0.00 0.00 40.26 4.30
2611 2643 5.488645 TTACGGCTTTTCTCGTTTCTTTT 57.511 34.783 0.00 0.00 40.31 2.27
2612 2644 4.024302 CCTTACGGCTTTTCTCGTTTCTTT 60.024 41.667 0.00 0.00 40.31 2.52
2613 2645 3.497262 CCTTACGGCTTTTCTCGTTTCTT 59.503 43.478 0.00 0.00 40.31 2.52
2614 2646 3.064931 CCTTACGGCTTTTCTCGTTTCT 58.935 45.455 0.00 0.00 40.31 2.52
2615 2647 2.804527 ACCTTACGGCTTTTCTCGTTTC 59.195 45.455 0.00 0.00 40.31 2.78
2616 2648 2.842457 ACCTTACGGCTTTTCTCGTTT 58.158 42.857 0.00 0.00 40.31 3.60
2617 2649 2.538512 ACCTTACGGCTTTTCTCGTT 57.461 45.000 0.00 0.00 40.31 3.85
2618 2650 2.538512 AACCTTACGGCTTTTCTCGT 57.461 45.000 0.00 0.00 42.55 4.18
2619 2651 3.742369 TGTAAACCTTACGGCTTTTCTCG 59.258 43.478 0.00 0.00 0.00 4.04
2620 2652 4.376717 CGTGTAAACCTTACGGCTTTTCTC 60.377 45.833 0.00 0.00 34.43 2.87
2621 2653 3.495753 CGTGTAAACCTTACGGCTTTTCT 59.504 43.478 0.00 0.00 34.43 2.52
2622 2654 3.802423 CGTGTAAACCTTACGGCTTTTC 58.198 45.455 0.00 0.00 34.43 2.29
2623 2655 3.883631 CGTGTAAACCTTACGGCTTTT 57.116 42.857 0.00 0.00 34.43 2.27
2629 2661 0.792031 GGTGCCGTGTAAACCTTACG 59.208 55.000 0.00 0.00 37.55 3.18
2630 2662 1.881591 TGGTGCCGTGTAAACCTTAC 58.118 50.000 0.00 0.00 34.90 2.34
2631 2663 2.634815 TTGGTGCCGTGTAAACCTTA 57.365 45.000 0.00 0.00 34.90 2.69
2632 2664 1.765230 TTTGGTGCCGTGTAAACCTT 58.235 45.000 0.00 0.00 34.90 3.50
2633 2665 1.765230 TTTTGGTGCCGTGTAAACCT 58.235 45.000 0.00 0.00 34.90 3.50
2634 2666 2.580966 TTTTTGGTGCCGTGTAAACC 57.419 45.000 0.00 0.00 34.38 3.27
2650 2682 3.165071 ACAATGGAGCCCGAAGATTTTT 58.835 40.909 0.00 0.00 0.00 1.94
2651 2683 2.807676 ACAATGGAGCCCGAAGATTTT 58.192 42.857 0.00 0.00 0.00 1.82
2652 2684 2.514458 ACAATGGAGCCCGAAGATTT 57.486 45.000 0.00 0.00 0.00 2.17
2653 2685 2.025887 AGAACAATGGAGCCCGAAGATT 60.026 45.455 0.00 0.00 0.00 2.40
2654 2686 1.561542 AGAACAATGGAGCCCGAAGAT 59.438 47.619 0.00 0.00 0.00 2.40
2655 2687 0.984230 AGAACAATGGAGCCCGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
2656 2688 1.740025 GAAGAACAATGGAGCCCGAAG 59.260 52.381 0.00 0.00 0.00 3.79
2657 2689 1.821216 GAAGAACAATGGAGCCCGAA 58.179 50.000 0.00 0.00 0.00 4.30
2658 2690 0.391130 CGAAGAACAATGGAGCCCGA 60.391 55.000 0.00 0.00 0.00 5.14
2659 2691 1.982073 GCGAAGAACAATGGAGCCCG 61.982 60.000 0.00 0.00 0.00 6.13
2660 2692 0.678048 AGCGAAGAACAATGGAGCCC 60.678 55.000 0.00 0.00 0.00 5.19
2661 2693 0.729690 GAGCGAAGAACAATGGAGCC 59.270 55.000 0.00 0.00 0.00 4.70
2662 2694 1.663135 GAGAGCGAAGAACAATGGAGC 59.337 52.381 0.00 0.00 0.00 4.70
2663 2695 2.928757 CAGAGAGCGAAGAACAATGGAG 59.071 50.000 0.00 0.00 0.00 3.86
2664 2696 2.562738 TCAGAGAGCGAAGAACAATGGA 59.437 45.455 0.00 0.00 0.00 3.41
2665 2697 2.964740 TCAGAGAGCGAAGAACAATGG 58.035 47.619 0.00 0.00 0.00 3.16
2666 2698 5.542616 AATTCAGAGAGCGAAGAACAATG 57.457 39.130 0.00 0.00 0.00 2.82
2667 2699 6.376978 CAAAATTCAGAGAGCGAAGAACAAT 58.623 36.000 0.00 0.00 0.00 2.71
2668 2700 5.751680 CAAAATTCAGAGAGCGAAGAACAA 58.248 37.500 0.00 0.00 0.00 2.83
2669 2701 4.319766 GCAAAATTCAGAGAGCGAAGAACA 60.320 41.667 0.00 0.00 0.00 3.18
2670 2702 4.083590 AGCAAAATTCAGAGAGCGAAGAAC 60.084 41.667 0.00 0.00 0.00 3.01
2671 2703 4.067896 AGCAAAATTCAGAGAGCGAAGAA 58.932 39.130 0.00 0.00 0.00 2.52
2672 2704 3.668447 AGCAAAATTCAGAGAGCGAAGA 58.332 40.909 0.00 0.00 0.00 2.87
2673 2705 4.156915 CAAGCAAAATTCAGAGAGCGAAG 58.843 43.478 0.00 0.00 0.00 3.79
2674 2706 3.610114 GCAAGCAAAATTCAGAGAGCGAA 60.610 43.478 0.00 0.00 0.00 4.70
2675 2707 2.095567 GCAAGCAAAATTCAGAGAGCGA 60.096 45.455 0.00 0.00 0.00 4.93
2676 2708 2.248487 GCAAGCAAAATTCAGAGAGCG 58.752 47.619 0.00 0.00 0.00 5.03
2677 2709 3.243336 CTGCAAGCAAAATTCAGAGAGC 58.757 45.455 0.00 0.00 0.00 4.09
2692 2724 1.127582 GAAACTCGCTAGTGCTGCAAG 59.872 52.381 2.77 0.00 35.62 4.01
2693 2725 1.148310 GAAACTCGCTAGTGCTGCAA 58.852 50.000 2.77 0.00 35.62 4.08
2694 2726 0.033366 TGAAACTCGCTAGTGCTGCA 59.967 50.000 0.00 0.00 35.62 4.41
2695 2727 0.718343 CTGAAACTCGCTAGTGCTGC 59.282 55.000 0.00 0.00 35.62 5.25
2696 2728 1.337260 ACCTGAAACTCGCTAGTGCTG 60.337 52.381 0.00 0.00 35.62 4.41
2697 2729 0.969894 ACCTGAAACTCGCTAGTGCT 59.030 50.000 0.00 0.00 35.62 4.40
2698 2730 1.351153 GACCTGAAACTCGCTAGTGC 58.649 55.000 0.00 0.00 35.62 4.40
2699 2731 1.272490 TGGACCTGAAACTCGCTAGTG 59.728 52.381 0.00 0.00 35.62 2.74
2700 2732 1.546476 CTGGACCTGAAACTCGCTAGT 59.454 52.381 0.00 0.00 37.65 2.57
2701 2733 1.819288 TCTGGACCTGAAACTCGCTAG 59.181 52.381 0.00 0.00 0.00 3.42
2702 2734 1.919240 TCTGGACCTGAAACTCGCTA 58.081 50.000 0.00 0.00 0.00 4.26
2703 2735 1.048601 TTCTGGACCTGAAACTCGCT 58.951 50.000 11.12 0.00 0.00 4.93
2704 2736 1.149148 GTTCTGGACCTGAAACTCGC 58.851 55.000 14.75 0.00 0.00 5.03
2705 2737 2.821991 AGTTCTGGACCTGAAACTCG 57.178 50.000 14.75 0.00 0.00 4.18
2706 2738 5.407407 TGATAGTTCTGGACCTGAAACTC 57.593 43.478 14.75 11.81 0.00 3.01
2707 2739 6.380079 AATGATAGTTCTGGACCTGAAACT 57.620 37.500 14.75 15.12 0.00 2.66
2708 2740 6.127897 CCAAATGATAGTTCTGGACCTGAAAC 60.128 42.308 14.75 9.63 0.00 2.78
2709 2741 5.945784 CCAAATGATAGTTCTGGACCTGAAA 59.054 40.000 14.75 2.01 0.00 2.69
2710 2742 5.014123 ACCAAATGATAGTTCTGGACCTGAA 59.986 40.000 9.59 9.59 0.00 3.02
2711 2743 4.536090 ACCAAATGATAGTTCTGGACCTGA 59.464 41.667 0.00 0.00 0.00 3.86
2712 2744 4.848357 ACCAAATGATAGTTCTGGACCTG 58.152 43.478 0.00 0.00 0.00 4.00
2713 2745 6.386927 TGATACCAAATGATAGTTCTGGACCT 59.613 38.462 0.00 0.00 0.00 3.85
2714 2746 6.591935 TGATACCAAATGATAGTTCTGGACC 58.408 40.000 0.00 0.00 0.00 4.46
2715 2747 7.500992 TCTGATACCAAATGATAGTTCTGGAC 58.499 38.462 0.00 0.00 0.00 4.02
2716 2748 7.345653 ACTCTGATACCAAATGATAGTTCTGGA 59.654 37.037 0.00 0.00 0.00 3.86
2717 2749 7.440556 CACTCTGATACCAAATGATAGTTCTGG 59.559 40.741 0.00 0.00 0.00 3.86
2718 2750 7.984050 ACACTCTGATACCAAATGATAGTTCTG 59.016 37.037 0.00 0.00 0.00 3.02
2719 2751 8.083828 ACACTCTGATACCAAATGATAGTTCT 57.916 34.615 0.00 0.00 0.00 3.01
2720 2752 8.723942 AACACTCTGATACCAAATGATAGTTC 57.276 34.615 0.00 0.00 0.00 3.01
2721 2753 7.492669 CGAACACTCTGATACCAAATGATAGTT 59.507 37.037 0.00 0.00 0.00 2.24
2722 2754 6.980978 CGAACACTCTGATACCAAATGATAGT 59.019 38.462 0.00 0.00 0.00 2.12
2723 2755 6.980978 ACGAACACTCTGATACCAAATGATAG 59.019 38.462 0.00 0.00 0.00 2.08
2724 2756 6.756542 CACGAACACTCTGATACCAAATGATA 59.243 38.462 0.00 0.00 0.00 2.15
2725 2757 5.582269 CACGAACACTCTGATACCAAATGAT 59.418 40.000 0.00 0.00 0.00 2.45
2726 2758 4.929211 CACGAACACTCTGATACCAAATGA 59.071 41.667 0.00 0.00 0.00 2.57
2727 2759 4.929211 TCACGAACACTCTGATACCAAATG 59.071 41.667 0.00 0.00 0.00 2.32
2728 2760 5.147330 TCACGAACACTCTGATACCAAAT 57.853 39.130 0.00 0.00 0.00 2.32
2729 2761 4.556233 CTCACGAACACTCTGATACCAAA 58.444 43.478 0.00 0.00 0.00 3.28
2730 2762 3.056821 CCTCACGAACACTCTGATACCAA 60.057 47.826 0.00 0.00 0.00 3.67
2731 2763 2.492088 CCTCACGAACACTCTGATACCA 59.508 50.000 0.00 0.00 0.00 3.25
2732 2764 2.159226 CCCTCACGAACACTCTGATACC 60.159 54.545 0.00 0.00 0.00 2.73
2733 2765 2.753452 TCCCTCACGAACACTCTGATAC 59.247 50.000 0.00 0.00 0.00 2.24
2734 2766 2.753452 GTCCCTCACGAACACTCTGATA 59.247 50.000 0.00 0.00 0.00 2.15
2735 2767 1.546476 GTCCCTCACGAACACTCTGAT 59.454 52.381 0.00 0.00 0.00 2.90
2736 2768 0.959553 GTCCCTCACGAACACTCTGA 59.040 55.000 0.00 0.00 0.00 3.27
2737 2769 0.038159 GGTCCCTCACGAACACTCTG 60.038 60.000 0.00 0.00 0.00 3.35
2738 2770 0.469331 TGGTCCCTCACGAACACTCT 60.469 55.000 0.00 0.00 0.00 3.24
2739 2771 0.608640 ATGGTCCCTCACGAACACTC 59.391 55.000 0.00 0.00 30.69 3.51
2740 2772 0.321671 CATGGTCCCTCACGAACACT 59.678 55.000 0.00 0.00 30.69 3.55
2741 2773 0.034896 ACATGGTCCCTCACGAACAC 59.965 55.000 0.00 0.00 30.69 3.32
2742 2774 0.320374 GACATGGTCCCTCACGAACA 59.680 55.000 0.00 0.00 33.00 3.18
2743 2775 0.736325 CGACATGGTCCCTCACGAAC 60.736 60.000 0.00 0.00 0.00 3.95
2744 2776 0.896479 TCGACATGGTCCCTCACGAA 60.896 55.000 0.00 0.00 0.00 3.85
2745 2777 1.303806 TCGACATGGTCCCTCACGA 60.304 57.895 0.00 0.00 0.00 4.35
2746 2778 1.139734 CTCGACATGGTCCCTCACG 59.860 63.158 0.00 0.00 0.00 4.35
2747 2779 1.153549 GCTCGACATGGTCCCTCAC 60.154 63.158 0.00 0.00 0.00 3.51
2748 2780 2.710902 CGCTCGACATGGTCCCTCA 61.711 63.158 0.00 0.00 0.00 3.86
2749 2781 2.105128 CGCTCGACATGGTCCCTC 59.895 66.667 0.00 0.00 0.00 4.30
2750 2782 3.461773 CCGCTCGACATGGTCCCT 61.462 66.667 0.00 0.00 0.00 4.20
2751 2783 4.530857 CCCGCTCGACATGGTCCC 62.531 72.222 0.00 0.00 0.00 4.46
2752 2784 3.432051 CTCCCGCTCGACATGGTCC 62.432 68.421 0.00 0.00 0.00 4.46
2753 2785 2.105128 CTCCCGCTCGACATGGTC 59.895 66.667 0.00 0.00 0.00 4.02
2754 2786 4.148825 GCTCCCGCTCGACATGGT 62.149 66.667 0.00 0.00 0.00 3.55
2755 2787 4.147449 TGCTCCCGCTCGACATGG 62.147 66.667 0.00 0.00 36.97 3.66
2756 2788 2.584418 CTGCTCCCGCTCGACATG 60.584 66.667 0.00 0.00 36.97 3.21
2757 2789 3.842923 CCTGCTCCCGCTCGACAT 61.843 66.667 0.00 0.00 36.97 3.06
2759 2791 4.500116 GTCCTGCTCCCGCTCGAC 62.500 72.222 0.00 0.00 36.97 4.20
2761 2793 4.803426 GTGTCCTGCTCCCGCTCG 62.803 72.222 0.00 0.00 36.97 5.03
2762 2794 4.803426 CGTGTCCTGCTCCCGCTC 62.803 72.222 0.00 0.00 36.97 5.03
2765 2797 4.436998 GTCCGTGTCCTGCTCCCG 62.437 72.222 0.00 0.00 0.00 5.14
2766 2798 4.436998 CGTCCGTGTCCTGCTCCC 62.437 72.222 0.00 0.00 0.00 4.30
2790 2822 3.991051 AGCAGGTGACGGTGTCGG 61.991 66.667 0.00 0.00 41.39 4.79
2791 2823 2.492449 ATCAGCAGGTGACGGTGTCG 62.492 60.000 3.92 0.00 38.28 4.35
2792 2824 0.737715 GATCAGCAGGTGACGGTGTC 60.738 60.000 3.92 0.00 38.28 3.67
2793 2825 1.293498 GATCAGCAGGTGACGGTGT 59.707 57.895 3.92 0.00 38.28 4.16
2794 2826 0.107993 ATGATCAGCAGGTGACGGTG 60.108 55.000 3.92 0.00 38.28 4.94
2795 2827 0.176680 GATGATCAGCAGGTGACGGT 59.823 55.000 5.98 0.00 38.28 4.83
2796 2828 0.873312 CGATGATCAGCAGGTGACGG 60.873 60.000 12.15 0.00 38.28 4.79
2797 2829 1.485838 GCGATGATCAGCAGGTGACG 61.486 60.000 12.15 5.23 38.28 4.35
2798 2830 0.179089 AGCGATGATCAGCAGGTGAC 60.179 55.000 12.15 0.02 38.28 3.67
2799 2831 0.103755 GAGCGATGATCAGCAGGTGA 59.896 55.000 12.15 4.40 40.38 4.02
2800 2832 0.104487 AGAGCGATGATCAGCAGGTG 59.896 55.000 12.15 0.00 35.48 4.00
2801 2833 1.697284 TAGAGCGATGATCAGCAGGT 58.303 50.000 12.15 9.30 35.48 4.00
2802 2834 2.230750 TCATAGAGCGATGATCAGCAGG 59.769 50.000 12.15 0.00 30.75 4.85
2803 2835 3.057386 AGTCATAGAGCGATGATCAGCAG 60.057 47.826 12.15 5.17 38.11 4.24
2804 2836 2.889678 AGTCATAGAGCGATGATCAGCA 59.110 45.455 12.15 0.00 38.11 4.41
2805 2837 3.500982 GAGTCATAGAGCGATGATCAGC 58.499 50.000 0.00 0.00 38.11 4.26
2806 2838 3.505293 TGGAGTCATAGAGCGATGATCAG 59.495 47.826 0.09 0.00 38.11 2.90
2807 2839 3.490348 TGGAGTCATAGAGCGATGATCA 58.510 45.455 0.00 0.00 38.11 2.92
2808 2840 4.671377 GATGGAGTCATAGAGCGATGATC 58.329 47.826 2.89 0.00 38.11 2.92
2809 2841 3.128415 CGATGGAGTCATAGAGCGATGAT 59.872 47.826 2.89 0.00 38.11 2.45
2810 2842 2.485814 CGATGGAGTCATAGAGCGATGA 59.514 50.000 0.00 0.00 32.98 2.92
2811 2843 2.861286 CGATGGAGTCATAGAGCGATG 58.139 52.381 0.00 0.00 32.98 3.84
2812 2844 1.201181 GCGATGGAGTCATAGAGCGAT 59.799 52.381 0.00 0.00 32.98 4.58
2813 2845 0.593618 GCGATGGAGTCATAGAGCGA 59.406 55.000 0.00 0.00 32.98 4.93
2814 2846 0.727457 CGCGATGGAGTCATAGAGCG 60.727 60.000 0.00 5.22 41.49 5.03
2815 2847 1.006314 GCGCGATGGAGTCATAGAGC 61.006 60.000 12.10 0.00 42.06 4.09
2816 2848 0.312102 TGCGCGATGGAGTCATAGAG 59.688 55.000 12.10 0.00 32.98 2.43
2817 2849 0.030773 GTGCGCGATGGAGTCATAGA 59.969 55.000 12.10 0.00 32.98 1.98
2818 2850 0.249031 TGTGCGCGATGGAGTCATAG 60.249 55.000 12.10 0.00 32.98 2.23
2819 2851 0.527600 GTGTGCGCGATGGAGTCATA 60.528 55.000 12.10 0.00 32.98 2.15
2820 2852 1.811266 GTGTGCGCGATGGAGTCAT 60.811 57.895 12.10 0.00 36.09 3.06
2821 2853 2.432456 GTGTGCGCGATGGAGTCA 60.432 61.111 12.10 0.00 0.00 3.41
2822 2854 2.432456 TGTGTGCGCGATGGAGTC 60.432 61.111 12.10 0.00 0.00 3.36
2823 2855 2.433145 CTGTGTGCGCGATGGAGT 60.433 61.111 12.10 0.00 0.00 3.85
2824 2856 3.857854 GCTGTGTGCGCGATGGAG 61.858 66.667 12.10 0.00 0.00 3.86
2842 2874 3.075005 TCCTACCACGGCTCTGGC 61.075 66.667 0.53 0.00 34.20 4.85
2843 2875 1.668101 GACTCCTACCACGGCTCTGG 61.668 65.000 0.00 0.00 37.33 3.86
2844 2876 1.810532 GACTCCTACCACGGCTCTG 59.189 63.158 0.00 0.00 0.00 3.35
2845 2877 1.749638 CGACTCCTACCACGGCTCT 60.750 63.158 0.00 0.00 0.00 4.09
2846 2878 2.799371 CGACTCCTACCACGGCTC 59.201 66.667 0.00 0.00 0.00 4.70
2847 2879 3.450115 GCGACTCCTACCACGGCT 61.450 66.667 0.00 0.00 0.00 5.52
2848 2880 4.849329 CGCGACTCCTACCACGGC 62.849 72.222 0.00 0.00 0.00 5.68
2849 2881 2.862347 GAACGCGACTCCTACCACGG 62.862 65.000 15.93 0.00 0.00 4.94
2850 2882 1.513586 GAACGCGACTCCTACCACG 60.514 63.158 15.93 0.00 0.00 4.94
2851 2883 1.513586 CGAACGCGACTCCTACCAC 60.514 63.158 15.93 0.00 40.82 4.16
2852 2884 1.915614 GACGAACGCGACTCCTACCA 61.916 60.000 15.93 0.00 41.64 3.25
2853 2885 1.226239 GACGAACGCGACTCCTACC 60.226 63.158 15.93 0.00 41.64 3.18
2854 2886 1.579626 CGACGAACGCGACTCCTAC 60.580 63.158 15.93 1.38 41.64 3.18
2855 2887 2.029288 ACGACGAACGCGACTCCTA 61.029 57.895 15.93 0.00 46.94 2.94
2856 2888 3.352222 ACGACGAACGCGACTCCT 61.352 61.111 15.93 0.00 46.94 3.69
2857 2889 3.164011 CACGACGAACGCGACTCC 61.164 66.667 15.93 0.00 46.94 3.85
2858 2890 3.164011 CCACGACGAACGCGACTC 61.164 66.667 15.93 8.13 46.94 3.36
2865 2897 4.364409 GTTGCCGCCACGACGAAC 62.364 66.667 0.00 0.00 34.06 3.95
2866 2898 4.893601 TGTTGCCGCCACGACGAA 62.894 61.111 0.00 0.00 34.06 3.85
2867 2899 4.893601 TTGTTGCCGCCACGACGA 62.894 61.111 0.00 0.00 34.06 4.20
2868 2900 4.659874 GTTGTTGCCGCCACGACG 62.660 66.667 0.00 0.00 0.00 5.12
2869 2901 2.780149 GATGTTGTTGCCGCCACGAC 62.780 60.000 7.84 7.84 0.00 4.34
2870 2902 2.593148 ATGTTGTTGCCGCCACGA 60.593 55.556 0.00 0.00 0.00 4.35
2871 2903 2.126888 GATGTTGTTGCCGCCACG 60.127 61.111 0.00 0.00 0.00 4.94
2872 2904 2.126888 CGATGTTGTTGCCGCCAC 60.127 61.111 0.00 0.00 0.00 5.01
2873 2905 2.593148 ACGATGTTGTTGCCGCCA 60.593 55.556 0.00 0.00 0.00 5.69
2874 2906 2.175811 GACGATGTTGTTGCCGCC 59.824 61.111 0.00 0.00 0.00 6.13
2875 2907 2.202171 CGACGATGTTGTTGCCGC 60.202 61.111 0.00 0.00 0.00 6.53
2876 2908 1.129809 GACGACGATGTTGTTGCCG 59.870 57.895 0.00 0.00 29.24 5.69
2877 2909 1.225376 TGGACGACGATGTTGTTGCC 61.225 55.000 0.00 0.00 29.24 4.52
2878 2910 0.110823 GTGGACGACGATGTTGTTGC 60.111 55.000 0.00 0.00 29.24 4.17
2879 2911 1.213491 TGTGGACGACGATGTTGTTG 58.787 50.000 0.00 0.00 29.24 3.33
2880 2912 1.864711 CTTGTGGACGACGATGTTGTT 59.135 47.619 0.00 0.00 29.24 2.83
2881 2913 1.497991 CTTGTGGACGACGATGTTGT 58.502 50.000 0.00 0.00 32.15 3.32
2882 2914 0.163788 GCTTGTGGACGACGATGTTG 59.836 55.000 0.00 0.00 0.00 3.33
2883 2915 1.282248 CGCTTGTGGACGACGATGTT 61.282 55.000 0.00 0.00 0.00 2.71
2884 2916 1.733041 CGCTTGTGGACGACGATGT 60.733 57.895 0.00 0.00 0.00 3.06
2885 2917 3.071459 GCGCTTGTGGACGACGATG 62.071 63.158 0.00 0.00 0.00 3.84
2886 2918 2.809601 GCGCTTGTGGACGACGAT 60.810 61.111 0.00 0.00 0.00 3.73
2887 2919 4.273257 TGCGCTTGTGGACGACGA 62.273 61.111 9.73 0.00 0.00 4.20
2888 2920 4.059459 GTGCGCTTGTGGACGACG 62.059 66.667 9.73 0.00 0.00 5.12
2892 2924 4.012895 CACCGTGCGCTTGTGGAC 62.013 66.667 9.73 0.00 0.00 4.02
2903 2935 4.457496 ATCCGCTCCTGCACCGTG 62.457 66.667 0.00 0.00 39.64 4.94
2904 2936 4.148825 GATCCGCTCCTGCACCGT 62.149 66.667 0.00 0.00 39.64 4.83
2905 2937 3.451556 ATGATCCGCTCCTGCACCG 62.452 63.158 0.00 0.00 39.64 4.94
2906 2938 1.596477 GATGATCCGCTCCTGCACC 60.596 63.158 0.00 0.00 39.64 5.01
2907 2939 1.144716 TGATGATCCGCTCCTGCAC 59.855 57.895 0.00 0.00 39.64 4.57
2908 2940 1.144716 GTGATGATCCGCTCCTGCA 59.855 57.895 0.00 0.00 39.64 4.41
2909 2941 1.596477 GGTGATGATCCGCTCCTGC 60.596 63.158 0.00 0.00 0.00 4.85
2910 2942 1.300465 CGGTGATGATCCGCTCCTG 60.300 63.158 0.00 0.00 41.48 3.86
2911 2943 1.455773 TCGGTGATGATCCGCTCCT 60.456 57.895 0.00 0.00 46.49 3.69
2912 2944 1.300233 GTCGGTGATGATCCGCTCC 60.300 63.158 0.00 0.00 46.49 4.70
2913 2945 0.032678 ATGTCGGTGATGATCCGCTC 59.967 55.000 0.00 0.00 46.49 5.03
2914 2946 0.032678 GATGTCGGTGATGATCCGCT 59.967 55.000 0.00 0.00 46.49 5.52
2915 2947 0.249447 TGATGTCGGTGATGATCCGC 60.249 55.000 0.00 0.00 46.49 5.54
2917 2949 2.609459 GTGTTGATGTCGGTGATGATCC 59.391 50.000 0.00 0.00 0.00 3.36
2918 2950 2.282555 CGTGTTGATGTCGGTGATGATC 59.717 50.000 0.00 0.00 0.00 2.92
2919 2951 2.270923 CGTGTTGATGTCGGTGATGAT 58.729 47.619 0.00 0.00 0.00 2.45
2920 2952 1.671556 CCGTGTTGATGTCGGTGATGA 60.672 52.381 0.00 0.00 39.51 2.92
2921 2953 0.721154 CCGTGTTGATGTCGGTGATG 59.279 55.000 0.00 0.00 39.51 3.07
2922 2954 3.137484 CCGTGTTGATGTCGGTGAT 57.863 52.632 0.00 0.00 39.51 3.06
2923 2955 4.665431 CCGTGTTGATGTCGGTGA 57.335 55.556 0.00 0.00 39.51 4.02
2927 2959 2.124903 GGCTATACCGTGTTGATGTCG 58.875 52.381 0.00 0.00 0.00 4.35
2928 2960 3.173668 TGGCTATACCGTGTTGATGTC 57.826 47.619 0.00 0.00 43.94 3.06
2929 2961 3.620427 TTGGCTATACCGTGTTGATGT 57.380 42.857 0.00 0.00 43.94 3.06
2930 2962 3.303990 GCATTGGCTATACCGTGTTGATG 60.304 47.826 0.00 0.00 43.94 3.07
2931 2963 2.878406 GCATTGGCTATACCGTGTTGAT 59.122 45.455 0.00 0.00 43.94 2.57
2932 2964 2.285083 GCATTGGCTATACCGTGTTGA 58.715 47.619 0.00 0.00 43.94 3.18
2933 2965 2.755836 GCATTGGCTATACCGTGTTG 57.244 50.000 0.00 0.00 43.94 3.33
2952 2984 1.800315 CGTAGTTCGTGGCGGTGAG 60.800 63.158 0.00 0.00 34.52 3.51
2953 2985 2.256158 CGTAGTTCGTGGCGGTGA 59.744 61.111 0.00 0.00 34.52 4.02
2966 2998 2.873472 CACTAGAGCCCACTAGACGTAG 59.127 54.545 14.30 0.00 41.42 3.51
2967 2999 2.502947 TCACTAGAGCCCACTAGACGTA 59.497 50.000 14.30 0.00 41.42 3.57
2968 3000 1.281287 TCACTAGAGCCCACTAGACGT 59.719 52.381 14.30 0.00 41.42 4.34
2969 3001 2.039818 TCACTAGAGCCCACTAGACG 57.960 55.000 14.30 7.28 41.42 4.18
2970 3002 2.035321 GCATCACTAGAGCCCACTAGAC 59.965 54.545 14.30 0.00 41.42 2.59
2971 3003 2.311463 GCATCACTAGAGCCCACTAGA 58.689 52.381 14.30 0.00 41.42 2.43
2972 3004 2.034878 TGCATCACTAGAGCCCACTAG 58.965 52.381 0.00 0.00 43.62 2.57
2973 3005 2.034878 CTGCATCACTAGAGCCCACTA 58.965 52.381 0.00 0.00 0.00 2.74
2974 3006 0.829333 CTGCATCACTAGAGCCCACT 59.171 55.000 0.00 0.00 0.00 4.00
2975 3007 0.826715 TCTGCATCACTAGAGCCCAC 59.173 55.000 0.00 0.00 0.00 4.61
2976 3008 1.690893 GATCTGCATCACTAGAGCCCA 59.309 52.381 0.00 0.00 0.00 5.36
2977 3009 2.453983 GATCTGCATCACTAGAGCCC 57.546 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.