Multiple sequence alignment - TraesCS3B01G605200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G605200 chr3B 100.000 2862 0 0 1 2862 823591606 823594467 0.000000e+00 5286
1 TraesCS3B01G605200 chr3B 81.943 803 97 30 2100 2862 826183279 826184073 1.120000e-178 636
2 TraesCS3B01G605200 chr3B 90.523 306 26 2 1 303 145454785 145455090 4.440000e-108 401
3 TraesCS3B01G605200 chr3A 92.279 1075 60 10 398 1458 750547495 750548560 0.000000e+00 1504
4 TraesCS3B01G605200 chr3A 87.937 572 53 4 1458 2029 750548674 750549229 0.000000e+00 660
5 TraesCS3B01G605200 chr3A 90.554 307 24 4 1 303 654808771 654809076 4.440000e-108 401
6 TraesCS3B01G605200 chr3A 89.355 310 25 4 1 303 127788539 127788847 1.610000e-102 383
7 TraesCS3B01G605200 chr3A 84.426 244 37 1 1216 1458 749818348 749818105 3.690000e-59 239
8 TraesCS3B01G605200 chr3A 90.055 181 18 0 123 303 127787812 127787632 4.770000e-58 235
9 TraesCS3B01G605200 chr2A 87.789 778 80 4 2100 2862 593500086 593500863 0.000000e+00 896
10 TraesCS3B01G605200 chr2A 79.717 424 73 12 2442 2860 507565168 507565583 7.750000e-76 294
11 TraesCS3B01G605200 chr3D 91.220 672 30 8 304 951 614268544 614269210 0.000000e+00 887
12 TraesCS3B01G605200 chr3D 85.860 785 92 8 2093 2859 346126630 346127413 0.000000e+00 817
13 TraesCS3B01G605200 chr3D 85.879 779 90 8 2100 2862 3849954 3850728 0.000000e+00 811
14 TraesCS3B01G605200 chr3D 89.365 630 64 3 1458 2087 614269811 614270437 0.000000e+00 789
15 TraesCS3B01G605200 chr3D 93.631 471 29 1 989 1458 614269210 614269680 0.000000e+00 702
16 TraesCS3B01G605200 chr5A 86.951 774 85 5 2104 2862 535555117 535555889 0.000000e+00 856
17 TraesCS3B01G605200 chr5A 85.548 775 97 5 2100 2860 482486107 482486880 0.000000e+00 797
18 TraesCS3B01G605200 chr5A 75.845 799 130 36 2100 2860 531650203 531650976 5.870000e-92 348
19 TraesCS3B01G605200 chr5A 88.889 279 24 4 30 303 331382473 331382749 1.270000e-88 337
20 TraesCS3B01G605200 chr2B 86.761 778 85 7 2100 2862 489944483 489943709 0.000000e+00 850
21 TraesCS3B01G605200 chr2B 90.850 306 23 5 1 303 237175301 237174998 3.430000e-109 405
22 TraesCS3B01G605200 chr5D 85.219 778 100 9 2100 2862 85908890 85909667 0.000000e+00 785
23 TraesCS3B01G605200 chr1A 85.166 782 96 6 2100 2862 418920607 418919827 0.000000e+00 784
24 TraesCS3B01G605200 chr1A 79.953 424 68 16 2442 2860 544924901 544925312 2.160000e-76 296
25 TraesCS3B01G605200 chr6B 89.962 528 46 4 2100 2624 205092858 205093381 0.000000e+00 675
26 TraesCS3B01G605200 chr6B 92.391 184 12 2 120 303 156370856 156370675 7.870000e-66 261
27 TraesCS3B01G605200 chr5B 90.164 305 27 3 1 303 7865014 7865317 7.430000e-106 394
28 TraesCS3B01G605200 chr5B 89.076 238 22 4 67 301 565539722 565539486 2.790000e-75 292
29 TraesCS3B01G605200 chr4A 87.255 306 33 6 1 303 712432111 712431809 7.590000e-91 344
30 TraesCS3B01G605200 chr4A 88.298 282 28 5 1 279 712127250 712127529 1.640000e-87 333
31 TraesCS3B01G605200 chr4A 80.235 425 65 17 2442 2860 420033221 420033632 4.630000e-78 302
32 TraesCS3B01G605200 chr4A 79.625 427 63 22 2442 2860 640929213 640928803 4.670000e-73 285
33 TraesCS3B01G605200 chr4A 91.111 180 16 0 124 303 712126664 712126485 7.920000e-61 244
34 TraesCS3B01G605200 chr4A 91.111 180 16 0 124 303 712432699 712432878 7.920000e-61 244
35 TraesCS3B01G605200 chr4A 90.217 184 16 2 120 303 733753579 733753398 3.690000e-59 239
36 TraesCS3B01G605200 chr1B 91.139 237 19 2 68 303 647072111 647071876 1.280000e-83 320
37 TraesCS3B01G605200 chr1B 92.265 181 12 2 124 303 429177359 429177180 3.660000e-64 255
38 TraesCS3B01G605200 chr1B 100.000 124 0 0 1 124 429197754 429197631 2.220000e-56 230
39 TraesCS3B01G605200 chr1B 89.560 182 18 1 123 303 647072848 647073029 2.220000e-56 230
40 TraesCS3B01G605200 chr1B 89.071 183 20 0 121 303 429198567 429198749 7.980000e-56 228
41 TraesCS3B01G605200 chr6A 80.760 421 69 12 2442 2860 493722781 493723191 4.600000e-83 318
42 TraesCS3B01G605200 chr6A 80.235 425 66 17 2442 2860 547632842 547632430 1.290000e-78 303
43 TraesCS3B01G605200 chr7A 79.765 425 67 17 2442 2860 36361391 36361802 1.000000e-74 291
44 TraesCS3B01G605200 chr7A 94.118 119 7 0 185 303 5198976 5198858 6.300000e-42 182
45 TraesCS3B01G605200 chrUn 84.426 244 37 1 1216 1458 290459211 290458968 3.690000e-59 239
46 TraesCS3B01G605200 chrUn 84.426 244 37 1 1216 1458 290482194 290481951 3.690000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G605200 chr3B 823591606 823594467 2861 False 5286.000000 5286 100.000000 1 2862 1 chr3B.!!$F2 2861
1 TraesCS3B01G605200 chr3B 826183279 826184073 794 False 636.000000 636 81.943000 2100 2862 1 chr3B.!!$F3 762
2 TraesCS3B01G605200 chr3A 750547495 750549229 1734 False 1082.000000 1504 90.108000 398 2029 2 chr3A.!!$F3 1631
3 TraesCS3B01G605200 chr2A 593500086 593500863 777 False 896.000000 896 87.789000 2100 2862 1 chr2A.!!$F2 762
4 TraesCS3B01G605200 chr3D 346126630 346127413 783 False 817.000000 817 85.860000 2093 2859 1 chr3D.!!$F2 766
5 TraesCS3B01G605200 chr3D 3849954 3850728 774 False 811.000000 811 85.879000 2100 2862 1 chr3D.!!$F1 762
6 TraesCS3B01G605200 chr3D 614268544 614270437 1893 False 792.666667 887 91.405333 304 2087 3 chr3D.!!$F3 1783
7 TraesCS3B01G605200 chr5A 535555117 535555889 772 False 856.000000 856 86.951000 2104 2862 1 chr5A.!!$F4 758
8 TraesCS3B01G605200 chr5A 482486107 482486880 773 False 797.000000 797 85.548000 2100 2860 1 chr5A.!!$F2 760
9 TraesCS3B01G605200 chr5A 531650203 531650976 773 False 348.000000 348 75.845000 2100 2860 1 chr5A.!!$F3 760
10 TraesCS3B01G605200 chr2B 489943709 489944483 774 True 850.000000 850 86.761000 2100 2862 1 chr2B.!!$R2 762
11 TraesCS3B01G605200 chr5D 85908890 85909667 777 False 785.000000 785 85.219000 2100 2862 1 chr5D.!!$F1 762
12 TraesCS3B01G605200 chr1A 418919827 418920607 780 True 784.000000 784 85.166000 2100 2862 1 chr1A.!!$R1 762
13 TraesCS3B01G605200 chr6B 205092858 205093381 523 False 675.000000 675 89.962000 2100 2624 1 chr6B.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.034477 CCCAAAATCACTACGGGGCT 60.034 55.0 0.0 0.0 32.88 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2233 0.109153 AAACGTAGAACCACCCCACC 59.891 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.404773 CCTTCCCGAGGCCTTCTT 58.595 61.111 6.77 0.00 39.09 2.52
44 45 1.222113 CCTTCCCGAGGCCTTCTTC 59.778 63.158 6.77 0.00 39.09 2.87
45 46 1.153549 CTTCCCGAGGCCTTCTTCG 60.154 63.158 6.77 5.81 0.00 3.79
46 47 1.889530 CTTCCCGAGGCCTTCTTCGT 61.890 60.000 6.77 0.00 0.00 3.85
47 48 2.125512 CCCGAGGCCTTCTTCGTG 60.126 66.667 6.77 0.00 0.00 4.35
48 49 2.646175 CCCGAGGCCTTCTTCGTGA 61.646 63.158 6.77 0.00 0.00 4.35
49 50 1.153745 CCGAGGCCTTCTTCGTGAG 60.154 63.158 6.77 0.00 0.00 3.51
50 51 1.153745 CGAGGCCTTCTTCGTGAGG 60.154 63.158 6.77 0.00 0.00 3.86
51 52 1.448717 GAGGCCTTCTTCGTGAGGC 60.449 63.158 6.77 5.84 45.99 4.70
52 53 1.893919 GAGGCCTTCTTCGTGAGGCT 61.894 60.000 6.77 0.00 45.97 4.58
53 54 0.614979 AGGCCTTCTTCGTGAGGCTA 60.615 55.000 13.45 0.00 45.97 3.93
54 55 0.466124 GGCCTTCTTCGTGAGGCTAT 59.534 55.000 13.45 0.00 45.97 2.97
55 56 1.539280 GGCCTTCTTCGTGAGGCTATC 60.539 57.143 13.45 0.00 45.97 2.08
56 57 1.539280 GCCTTCTTCGTGAGGCTATCC 60.539 57.143 7.11 0.00 43.58 2.59
68 69 1.889829 AGGCTATCCTCTCACATACGC 59.110 52.381 0.00 0.00 38.72 4.42
69 70 1.067495 GGCTATCCTCTCACATACGCC 60.067 57.143 0.00 0.00 0.00 5.68
70 71 1.401670 GCTATCCTCTCACATACGCCG 60.402 57.143 0.00 0.00 0.00 6.46
71 72 1.880675 CTATCCTCTCACATACGCCGT 59.119 52.381 0.00 0.00 0.00 5.68
72 73 0.669077 ATCCTCTCACATACGCCGTC 59.331 55.000 0.00 0.00 0.00 4.79
73 74 1.298413 CCTCTCACATACGCCGTCG 60.298 63.158 0.00 0.00 42.43 5.12
74 75 1.298413 CTCTCACATACGCCGTCGG 60.298 63.158 6.99 6.99 40.69 4.79
75 76 2.954868 CTCACATACGCCGTCGGC 60.955 66.667 26.69 26.69 46.75 5.54
86 87 4.838486 CGTCGGCACCTCGCTCTC 62.838 72.222 0.00 0.00 41.91 3.20
87 88 4.838486 GTCGGCACCTCGCTCTCG 62.838 72.222 0.00 0.00 41.91 4.04
98 99 2.401195 GCTCTCGCGATTTGCCAC 59.599 61.111 10.36 0.00 42.08 5.01
99 100 2.697425 CTCTCGCGATTTGCCACG 59.303 61.111 10.36 0.00 42.08 4.94
100 101 2.802667 CTCTCGCGATTTGCCACGG 61.803 63.158 10.36 0.00 42.08 4.94
101 102 4.520846 CTCGCGATTTGCCACGGC 62.521 66.667 10.36 0.00 42.08 5.68
128 129 7.910441 CCACTTGGCATTTTCTTTAAATCAT 57.090 32.000 0.00 0.00 34.19 2.45
129 130 7.967178 CCACTTGGCATTTTCTTTAAATCATC 58.033 34.615 0.00 0.00 34.19 2.92
130 131 7.820872 CCACTTGGCATTTTCTTTAAATCATCT 59.179 33.333 0.00 0.00 34.19 2.90
131 132 8.653338 CACTTGGCATTTTCTTTAAATCATCTG 58.347 33.333 0.00 0.00 34.19 2.90
132 133 7.820872 ACTTGGCATTTTCTTTAAATCATCTGG 59.179 33.333 0.00 0.00 34.19 3.86
133 134 6.108015 TGGCATTTTCTTTAAATCATCTGGC 58.892 36.000 0.00 0.00 34.19 4.85
134 135 6.070653 TGGCATTTTCTTTAAATCATCTGGCT 60.071 34.615 11.99 0.00 34.19 4.75
135 136 6.820152 GGCATTTTCTTTAAATCATCTGGCTT 59.180 34.615 0.00 0.00 34.19 4.35
136 137 7.981225 GGCATTTTCTTTAAATCATCTGGCTTA 59.019 33.333 0.00 0.00 34.19 3.09
137 138 9.028185 GCATTTTCTTTAAATCATCTGGCTTAG 57.972 33.333 0.00 0.00 34.19 2.18
140 141 9.912634 TTTTCTTTAAATCATCTGGCTTAGTTG 57.087 29.630 0.00 0.00 0.00 3.16
141 142 8.635765 TTCTTTAAATCATCTGGCTTAGTTGT 57.364 30.769 0.00 0.00 0.00 3.32
142 143 8.044060 TCTTTAAATCATCTGGCTTAGTTGTG 57.956 34.615 0.00 0.00 0.00 3.33
143 144 7.665559 TCTTTAAATCATCTGGCTTAGTTGTGT 59.334 33.333 0.00 0.00 0.00 3.72
144 145 7.759489 TTAAATCATCTGGCTTAGTTGTGTT 57.241 32.000 0.00 0.00 0.00 3.32
145 146 5.633830 AATCATCTGGCTTAGTTGTGTTG 57.366 39.130 0.00 0.00 0.00 3.33
146 147 4.350368 TCATCTGGCTTAGTTGTGTTGA 57.650 40.909 0.00 0.00 0.00 3.18
147 148 4.065088 TCATCTGGCTTAGTTGTGTTGAC 58.935 43.478 0.00 0.00 0.00 3.18
148 149 3.838244 TCTGGCTTAGTTGTGTTGACT 57.162 42.857 0.00 0.00 0.00 3.41
149 150 3.728845 TCTGGCTTAGTTGTGTTGACTC 58.271 45.455 0.00 0.00 0.00 3.36
150 151 3.388024 TCTGGCTTAGTTGTGTTGACTCT 59.612 43.478 0.00 0.00 0.00 3.24
151 152 3.466836 TGGCTTAGTTGTGTTGACTCTG 58.533 45.455 0.00 0.00 0.00 3.35
152 153 2.808543 GGCTTAGTTGTGTTGACTCTGG 59.191 50.000 0.00 0.00 0.00 3.86
153 154 3.467803 GCTTAGTTGTGTTGACTCTGGT 58.532 45.455 0.00 0.00 0.00 4.00
154 155 3.495001 GCTTAGTTGTGTTGACTCTGGTC 59.505 47.826 0.00 0.00 42.42 4.02
162 163 3.131850 TGACTCTGGTCAGCACTCA 57.868 52.632 0.00 0.00 46.19 3.41
163 164 1.413118 TGACTCTGGTCAGCACTCAA 58.587 50.000 0.00 0.00 46.19 3.02
164 165 1.762370 TGACTCTGGTCAGCACTCAAA 59.238 47.619 0.00 0.00 46.19 2.69
165 166 2.170397 TGACTCTGGTCAGCACTCAAAA 59.830 45.455 0.00 0.00 46.19 2.44
166 167 2.545946 GACTCTGGTCAGCACTCAAAAC 59.454 50.000 0.00 0.00 41.75 2.43
167 168 1.876156 CTCTGGTCAGCACTCAAAACC 59.124 52.381 0.00 0.00 0.00 3.27
168 169 0.588252 CTGGTCAGCACTCAAAACCG 59.412 55.000 0.00 0.00 32.50 4.44
169 170 0.817634 TGGTCAGCACTCAAAACCGG 60.818 55.000 0.00 0.00 32.50 5.28
170 171 0.818040 GGTCAGCACTCAAAACCGGT 60.818 55.000 0.00 0.00 0.00 5.28
171 172 1.021968 GTCAGCACTCAAAACCGGTT 58.978 50.000 15.86 15.86 0.00 4.44
172 173 1.404035 GTCAGCACTCAAAACCGGTTT 59.596 47.619 26.87 26.87 0.00 3.27
173 174 1.673920 TCAGCACTCAAAACCGGTTTC 59.326 47.619 31.69 18.20 31.45 2.78
174 175 1.403679 CAGCACTCAAAACCGGTTTCA 59.596 47.619 31.69 20.05 31.45 2.69
175 176 2.096248 AGCACTCAAAACCGGTTTCAA 58.904 42.857 31.69 20.89 31.45 2.69
176 177 2.693074 AGCACTCAAAACCGGTTTCAAT 59.307 40.909 31.69 14.89 31.45 2.57
177 178 2.794350 GCACTCAAAACCGGTTTCAATG 59.206 45.455 31.69 25.05 31.45 2.82
178 179 3.736740 GCACTCAAAACCGGTTTCAATGT 60.737 43.478 31.69 22.84 31.45 2.71
179 180 3.796178 CACTCAAAACCGGTTTCAATGTG 59.204 43.478 31.69 28.03 31.45 3.21
180 181 3.697045 ACTCAAAACCGGTTTCAATGTGA 59.303 39.130 31.69 26.79 31.45 3.58
181 182 4.035278 TCAAAACCGGTTTCAATGTGAC 57.965 40.909 31.69 0.00 31.45 3.67
182 183 3.120041 CAAAACCGGTTTCAATGTGACC 58.880 45.455 31.69 0.00 31.45 4.02
183 184 1.324383 AACCGGTTTCAATGTGACCC 58.676 50.000 15.86 0.00 0.00 4.46
184 185 0.183971 ACCGGTTTCAATGTGACCCA 59.816 50.000 0.00 0.00 0.00 4.51
185 186 1.323412 CCGGTTTCAATGTGACCCAA 58.677 50.000 0.00 0.00 0.00 4.12
186 187 1.683917 CCGGTTTCAATGTGACCCAAA 59.316 47.619 0.00 0.00 0.00 3.28
187 188 2.101582 CCGGTTTCAATGTGACCCAAAA 59.898 45.455 0.00 0.00 0.00 2.44
188 189 3.244044 CCGGTTTCAATGTGACCCAAAAT 60.244 43.478 0.00 0.00 0.00 1.82
189 190 3.987220 CGGTTTCAATGTGACCCAAAATC 59.013 43.478 3.13 0.00 0.00 2.17
190 191 4.500545 CGGTTTCAATGTGACCCAAAATCA 60.501 41.667 3.13 0.00 0.00 2.57
191 192 4.749598 GGTTTCAATGTGACCCAAAATCAC 59.250 41.667 0.00 0.00 45.58 3.06
192 193 5.453198 GGTTTCAATGTGACCCAAAATCACT 60.453 40.000 6.68 0.00 45.58 3.41
193 194 6.239176 GGTTTCAATGTGACCCAAAATCACTA 60.239 38.462 6.68 0.00 45.58 2.74
194 195 5.957842 TCAATGTGACCCAAAATCACTAC 57.042 39.130 6.68 0.00 45.58 2.73
195 196 4.454161 TCAATGTGACCCAAAATCACTACG 59.546 41.667 6.68 0.00 45.58 3.51
196 197 2.773487 TGTGACCCAAAATCACTACGG 58.227 47.619 6.68 0.00 45.58 4.02
197 198 2.081462 GTGACCCAAAATCACTACGGG 58.919 52.381 0.00 0.00 42.68 5.28
198 199 1.003812 TGACCCAAAATCACTACGGGG 59.996 52.381 0.00 0.00 41.55 5.73
199 200 0.323087 ACCCAAAATCACTACGGGGC 60.323 55.000 0.00 0.00 41.55 5.80
200 201 0.034477 CCCAAAATCACTACGGGGCT 60.034 55.000 0.00 0.00 32.88 5.19
201 202 1.615919 CCCAAAATCACTACGGGGCTT 60.616 52.381 0.00 0.00 32.88 4.35
202 203 1.472480 CCAAAATCACTACGGGGCTTG 59.528 52.381 0.00 0.00 0.00 4.01
203 204 2.432444 CAAAATCACTACGGGGCTTGA 58.568 47.619 0.00 0.00 0.00 3.02
204 205 3.016736 CAAAATCACTACGGGGCTTGAT 58.983 45.455 0.00 0.00 0.00 2.57
205 206 3.366052 AAATCACTACGGGGCTTGATT 57.634 42.857 0.00 0.00 39.78 2.57
206 207 3.366052 AATCACTACGGGGCTTGATTT 57.634 42.857 0.00 0.00 35.60 2.17
207 208 4.497291 AATCACTACGGGGCTTGATTTA 57.503 40.909 0.00 0.00 35.60 1.40
208 209 4.706842 ATCACTACGGGGCTTGATTTAT 57.293 40.909 0.00 0.00 0.00 1.40
209 210 4.067972 TCACTACGGGGCTTGATTTATC 57.932 45.455 0.00 0.00 0.00 1.75
210 211 3.139077 CACTACGGGGCTTGATTTATCC 58.861 50.000 0.00 0.00 0.00 2.59
211 212 2.224209 ACTACGGGGCTTGATTTATCCG 60.224 50.000 0.00 0.00 42.69 4.18
212 213 0.179029 ACGGGGCTTGATTTATCCGG 60.179 55.000 0.00 0.00 41.49 5.14
213 214 0.179029 CGGGGCTTGATTTATCCGGT 60.179 55.000 0.00 0.00 34.54 5.28
214 215 1.749286 CGGGGCTTGATTTATCCGGTT 60.749 52.381 0.00 0.00 34.54 4.44
215 216 2.384828 GGGGCTTGATTTATCCGGTTT 58.615 47.619 0.00 0.00 0.00 3.27
216 217 2.764010 GGGGCTTGATTTATCCGGTTTT 59.236 45.455 0.00 0.00 0.00 2.43
217 218 3.430236 GGGGCTTGATTTATCCGGTTTTG 60.430 47.826 0.00 0.00 0.00 2.44
218 219 3.445805 GGGCTTGATTTATCCGGTTTTGA 59.554 43.478 0.00 0.00 0.00 2.69
219 220 4.421058 GGCTTGATTTATCCGGTTTTGAC 58.579 43.478 0.00 0.00 0.00 3.18
220 221 4.082463 GGCTTGATTTATCCGGTTTTGACA 60.082 41.667 0.00 0.00 0.00 3.58
221 222 5.465935 GCTTGATTTATCCGGTTTTGACAA 58.534 37.500 0.00 2.71 0.00 3.18
222 223 6.099341 GCTTGATTTATCCGGTTTTGACAAT 58.901 36.000 0.00 0.00 0.00 2.71
223 224 6.589907 GCTTGATTTATCCGGTTTTGACAATT 59.410 34.615 0.00 0.00 0.00 2.32
224 225 7.117667 GCTTGATTTATCCGGTTTTGACAATTT 59.882 33.333 0.00 0.00 0.00 1.82
225 226 7.881643 TGATTTATCCGGTTTTGACAATTTG 57.118 32.000 0.00 0.00 0.00 2.32
226 227 7.661968 TGATTTATCCGGTTTTGACAATTTGA 58.338 30.769 0.00 0.00 0.00 2.69
227 228 7.812191 TGATTTATCCGGTTTTGACAATTTGAG 59.188 33.333 0.00 0.00 0.00 3.02
228 229 4.519540 ATCCGGTTTTGACAATTTGAGG 57.480 40.909 0.00 0.00 0.00 3.86
229 230 2.625790 TCCGGTTTTGACAATTTGAGGG 59.374 45.455 0.00 0.00 0.00 4.30
230 231 2.288763 CCGGTTTTGACAATTTGAGGGG 60.289 50.000 2.79 0.00 0.00 4.79
231 232 2.288763 CGGTTTTGACAATTTGAGGGGG 60.289 50.000 2.79 0.00 0.00 5.40
232 233 2.703536 GGTTTTGACAATTTGAGGGGGT 59.296 45.455 2.79 0.00 0.00 4.95
233 234 3.898741 GGTTTTGACAATTTGAGGGGGTA 59.101 43.478 2.79 0.00 0.00 3.69
234 235 4.345547 GGTTTTGACAATTTGAGGGGGTAA 59.654 41.667 2.79 0.00 0.00 2.85
235 236 5.163290 GGTTTTGACAATTTGAGGGGGTAAA 60.163 40.000 2.79 0.00 0.00 2.01
236 237 6.465178 GGTTTTGACAATTTGAGGGGGTAAAT 60.465 38.462 2.79 0.00 0.00 1.40
237 238 6.755542 TTTGACAATTTGAGGGGGTAAATT 57.244 33.333 2.79 0.00 37.06 1.82
238 239 7.857404 TTTGACAATTTGAGGGGGTAAATTA 57.143 32.000 2.79 0.00 35.40 1.40
239 240 8.442660 TTTGACAATTTGAGGGGGTAAATTAT 57.557 30.769 2.79 0.00 35.40 1.28
240 241 9.548631 TTTGACAATTTGAGGGGGTAAATTATA 57.451 29.630 2.79 0.00 35.40 0.98
241 242 9.722317 TTGACAATTTGAGGGGGTAAATTATAT 57.278 29.630 2.79 0.00 35.40 0.86
242 243 9.142014 TGACAATTTGAGGGGGTAAATTATATG 57.858 33.333 2.79 0.00 35.40 1.78
243 244 8.491045 ACAATTTGAGGGGGTAAATTATATGG 57.509 34.615 2.79 0.00 35.40 2.74
244 245 8.071229 ACAATTTGAGGGGGTAAATTATATGGT 58.929 33.333 2.79 0.00 35.40 3.55
245 246 9.594936 CAATTTGAGGGGGTAAATTATATGGTA 57.405 33.333 0.00 0.00 35.40 3.25
248 249 9.594936 TTTGAGGGGGTAAATTATATGGTATTG 57.405 33.333 0.00 0.00 0.00 1.90
249 250 7.704727 TGAGGGGGTAAATTATATGGTATTGG 58.295 38.462 0.00 0.00 0.00 3.16
250 251 7.521468 TGAGGGGGTAAATTATATGGTATTGGA 59.479 37.037 0.00 0.00 0.00 3.53
251 252 7.939781 AGGGGGTAAATTATATGGTATTGGAG 58.060 38.462 0.00 0.00 0.00 3.86
252 253 7.523239 AGGGGGTAAATTATATGGTATTGGAGT 59.477 37.037 0.00 0.00 0.00 3.85
253 254 8.174757 GGGGGTAAATTATATGGTATTGGAGTT 58.825 37.037 0.00 0.00 0.00 3.01
254 255 9.239551 GGGGTAAATTATATGGTATTGGAGTTC 57.760 37.037 0.00 0.00 0.00 3.01
255 256 9.802039 GGGTAAATTATATGGTATTGGAGTTCA 57.198 33.333 0.00 0.00 0.00 3.18
258 259 8.940397 AAATTATATGGTATTGGAGTTCAGGG 57.060 34.615 0.00 0.00 0.00 4.45
259 260 6.448369 TTATATGGTATTGGAGTTCAGGGG 57.552 41.667 0.00 0.00 0.00 4.79
260 261 1.295020 TGGTATTGGAGTTCAGGGGG 58.705 55.000 0.00 0.00 0.00 5.40
261 262 1.296002 GGTATTGGAGTTCAGGGGGT 58.704 55.000 0.00 0.00 0.00 4.95
262 263 1.639108 GGTATTGGAGTTCAGGGGGTT 59.361 52.381 0.00 0.00 0.00 4.11
263 264 2.848071 GGTATTGGAGTTCAGGGGGTTA 59.152 50.000 0.00 0.00 0.00 2.85
264 265 3.462205 GGTATTGGAGTTCAGGGGGTTAT 59.538 47.826 0.00 0.00 0.00 1.89
265 266 3.669939 ATTGGAGTTCAGGGGGTTATG 57.330 47.619 0.00 0.00 0.00 1.90
266 267 1.295020 TGGAGTTCAGGGGGTTATGG 58.705 55.000 0.00 0.00 0.00 2.74
267 268 1.203505 TGGAGTTCAGGGGGTTATGGA 60.204 52.381 0.00 0.00 0.00 3.41
268 269 2.136026 GGAGTTCAGGGGGTTATGGAT 58.864 52.381 0.00 0.00 0.00 3.41
269 270 2.106684 GGAGTTCAGGGGGTTATGGATC 59.893 54.545 0.00 0.00 0.00 3.36
270 271 2.106684 GAGTTCAGGGGGTTATGGATCC 59.893 54.545 4.20 4.20 0.00 3.36
271 272 1.850345 GTTCAGGGGGTTATGGATCCA 59.150 52.381 18.88 18.88 0.00 3.41
272 273 2.447047 GTTCAGGGGGTTATGGATCCAT 59.553 50.000 29.66 29.66 40.19 3.41
273 274 2.348472 TCAGGGGGTTATGGATCCATC 58.652 52.381 30.61 17.04 37.82 3.51
274 275 2.065007 CAGGGGGTTATGGATCCATCA 58.935 52.381 30.61 17.84 37.82 3.07
275 276 2.446666 CAGGGGGTTATGGATCCATCAA 59.553 50.000 30.61 18.85 37.82 2.57
276 277 3.076484 CAGGGGGTTATGGATCCATCAAT 59.924 47.826 30.61 10.84 37.82 2.57
277 278 4.292041 CAGGGGGTTATGGATCCATCAATA 59.708 45.833 30.61 10.83 37.82 1.90
278 279 5.043881 CAGGGGGTTATGGATCCATCAATAT 60.044 44.000 30.61 9.63 37.82 1.28
279 280 5.043881 AGGGGGTTATGGATCCATCAATATG 60.044 44.000 30.61 0.00 37.82 1.78
291 292 4.877378 CATCAATATGGATTTGTGGGGG 57.123 45.455 0.00 0.00 0.00 5.40
292 293 4.482030 CATCAATATGGATTTGTGGGGGA 58.518 43.478 0.00 0.00 0.00 4.81
293 294 4.616671 TCAATATGGATTTGTGGGGGAA 57.383 40.909 0.00 0.00 0.00 3.97
294 295 4.952845 TCAATATGGATTTGTGGGGGAAA 58.047 39.130 0.00 0.00 0.00 3.13
295 296 5.345418 TCAATATGGATTTGTGGGGGAAAA 58.655 37.500 0.00 0.00 0.00 2.29
296 297 5.188751 TCAATATGGATTTGTGGGGGAAAAC 59.811 40.000 0.00 0.00 0.00 2.43
297 298 2.785357 TGGATTTGTGGGGGAAAACT 57.215 45.000 0.00 0.00 0.00 2.66
298 299 3.905493 TGGATTTGTGGGGGAAAACTA 57.095 42.857 0.00 0.00 0.00 2.24
299 300 4.412060 TGGATTTGTGGGGGAAAACTAT 57.588 40.909 0.00 0.00 0.00 2.12
300 301 5.538082 TGGATTTGTGGGGGAAAACTATA 57.462 39.130 0.00 0.00 0.00 1.31
301 302 5.265989 TGGATTTGTGGGGGAAAACTATAC 58.734 41.667 0.00 0.00 0.00 1.47
302 303 5.015817 TGGATTTGTGGGGGAAAACTATACT 59.984 40.000 0.00 0.00 0.00 2.12
355 358 4.442706 ACAATGCTACCCTTATGTTCTCG 58.557 43.478 0.00 0.00 0.00 4.04
435 439 1.818060 TGCACAAACATATGGGACTGC 59.182 47.619 7.80 8.87 0.00 4.40
647 652 2.401766 GCTGCACGATCAAGGGGTG 61.402 63.158 0.00 0.00 34.85 4.61
705 710 8.902806 GTTGAGGAACACCATCATCATATAAAA 58.097 33.333 0.00 0.00 39.57 1.52
785 807 1.891150 CCTTGAGATTTTGGCAGCAGT 59.109 47.619 0.00 0.00 0.00 4.40
790 812 3.943381 TGAGATTTTGGCAGCAGTGATAG 59.057 43.478 0.00 0.00 0.00 2.08
797 819 5.366482 TTGGCAGCAGTGATAGGTAATTA 57.634 39.130 0.00 0.00 0.00 1.40
864 886 5.059833 GCAAGCAGCATAGTAATCCTAACT 58.940 41.667 0.00 0.00 44.79 2.24
872 894 5.342866 CATAGTAATCCTAACTAGGCCCCT 58.657 45.833 0.00 0.00 43.31 4.79
887 909 2.359249 GGCCCCTAATGGATCCAAAAGT 60.359 50.000 20.67 7.17 35.39 2.66
891 913 5.515106 CCCCTAATGGATCCAAAAGTGTTA 58.485 41.667 20.67 10.60 35.39 2.41
923 945 8.014517 GCTACTAAGGTAGTATTACTTAGCACG 58.985 40.741 13.04 0.00 45.18 5.34
1050 1076 3.604582 CCTTCTTCTCTGCTACTTTGGG 58.395 50.000 0.00 0.00 0.00 4.12
1051 1077 2.770164 TCTTCTCTGCTACTTTGGGC 57.230 50.000 0.00 0.00 0.00 5.36
1104 1130 6.292649 CCGAAAACAAAAAGGTAAATTGCTCC 60.293 38.462 0.00 0.00 0.00 4.70
1107 1133 6.478512 AACAAAAAGGTAAATTGCTCCTCA 57.521 33.333 0.00 0.00 0.00 3.86
1131 1157 2.616960 TCATCTGGTTCATTCGTTCGG 58.383 47.619 0.00 0.00 0.00 4.30
1150 1176 6.540205 GTTCGGTTGTGTTGATTATTAGGTC 58.460 40.000 0.00 0.00 0.00 3.85
1154 1180 6.966632 CGGTTGTGTTGATTATTAGGTCATTG 59.033 38.462 0.00 0.00 0.00 2.82
1159 1185 8.233868 TGTGTTGATTATTAGGTCATTGTTTCG 58.766 33.333 0.00 0.00 0.00 3.46
1180 1206 5.410067 TCGAAAATACTAAACCTACGGGTG 58.590 41.667 0.00 0.00 46.67 4.61
1181 1207 4.033243 CGAAAATACTAAACCTACGGGTGC 59.967 45.833 0.00 0.00 46.67 5.01
1183 1209 2.236489 TACTAAACCTACGGGTGCCT 57.764 50.000 0.00 0.00 46.67 4.75
1185 1211 1.002773 ACTAAACCTACGGGTGCCTTG 59.997 52.381 0.00 0.00 46.67 3.61
1186 1212 0.325602 TAAACCTACGGGTGCCTTGG 59.674 55.000 0.00 0.00 46.67 3.61
1190 1217 3.659089 CTACGGGTGCCTTGGTCGG 62.659 68.421 0.00 0.00 0.00 4.79
1205 1232 1.301716 TCGGTTGCAGCCTCAGTTC 60.302 57.895 18.19 0.00 0.00 3.01
1283 1310 0.644380 TGGTCATGGGGATCCTCTCT 59.356 55.000 14.22 0.00 0.00 3.10
1302 1329 2.049959 CTGTGATCTCGCTGCTAATCG 58.950 52.381 0.00 0.00 0.00 3.34
1351 1378 2.023695 TCTACCCCTACCCTACCAACAG 60.024 54.545 0.00 0.00 0.00 3.16
1357 1384 1.831736 CTACCCTACCAACAGGACCAG 59.168 57.143 0.00 0.00 38.00 4.00
1425 1452 5.901853 ACCATCCTCATAGTCTTCTTCATCA 59.098 40.000 0.00 0.00 0.00 3.07
1452 1479 4.874396 CCGAGTAACTAAATGAACCCCTTC 59.126 45.833 0.00 0.00 0.00 3.46
1478 1636 9.949174 CATTTATCAAATATGGTCGTTCATCAA 57.051 29.630 0.00 0.00 0.00 2.57
1495 1653 7.149080 CGTTCATCAAATGATCTGTTTTGTCAC 60.149 37.037 12.75 7.43 39.39 3.67
1497 1655 5.749596 TCAAATGATCTGTTTTGTCACGT 57.250 34.783 12.75 0.00 35.01 4.49
1514 1672 9.666626 TTTGTCACGTTAACTAATTACCATTTG 57.333 29.630 3.71 0.00 0.00 2.32
1532 1690 6.208644 CCATTTGTCGATGGGATTAATTGTC 58.791 40.000 0.00 0.00 42.36 3.18
1541 1699 7.230510 TCGATGGGATTAATTGTCAAAATAGGG 59.769 37.037 0.00 0.00 0.00 3.53
1552 1710 2.027561 TCAAAATAGGGTGGTCTCGGTG 60.028 50.000 0.00 0.00 0.00 4.94
1574 1732 0.895100 GGCTTTGGTGATGCTGGTGA 60.895 55.000 0.00 0.00 0.00 4.02
1575 1733 0.961019 GCTTTGGTGATGCTGGTGAA 59.039 50.000 0.00 0.00 0.00 3.18
1576 1734 1.068055 GCTTTGGTGATGCTGGTGAAG 60.068 52.381 0.00 0.00 0.00 3.02
1578 1736 0.478072 TTGGTGATGCTGGTGAAGGT 59.522 50.000 0.00 0.00 0.00 3.50
1586 1744 0.890996 GCTGGTGAAGGTGACCAAGG 60.891 60.000 3.63 0.00 43.02 3.61
1589 1747 1.966451 GTGAAGGTGACCAAGGCGG 60.966 63.158 3.63 0.00 42.50 6.13
1609 1767 4.217159 GCCGCGAACCTCCGGTAT 62.217 66.667 8.23 0.00 45.98 2.73
1614 1772 1.813859 CGAACCTCCGGTATCAGCA 59.186 57.895 0.00 0.00 33.12 4.41
1618 1776 2.028190 CTCCGGTATCAGCAGCCG 59.972 66.667 0.00 0.00 44.55 5.52
1648 1806 4.746309 GGCACCATGAGCTGCCCA 62.746 66.667 14.84 0.00 46.38 5.36
1651 1809 2.184830 CACCATGAGCTGCCCATCG 61.185 63.158 0.00 0.00 0.00 3.84
1653 1811 1.072678 CCATGAGCTGCCCATCGAT 59.927 57.895 0.00 0.00 0.00 3.59
1654 1812 1.235281 CCATGAGCTGCCCATCGATG 61.235 60.000 18.76 18.76 0.00 3.84
1659 1817 2.280389 CTGCCCATCGATGACGGG 60.280 66.667 26.86 19.82 43.42 5.28
1726 1884 1.577328 CCGCGCTCATCTGGTTTGTT 61.577 55.000 5.56 0.00 0.00 2.83
1735 1893 3.575399 CTGGTTTGTTTGCCAGCTC 57.425 52.632 0.00 0.00 44.65 4.09
1792 1950 2.219875 CCCCGGGGATGATGAGGAG 61.220 68.421 38.41 1.08 37.50 3.69
1793 1951 2.219875 CCCGGGGATGATGAGGAGG 61.220 68.421 14.71 0.00 0.00 4.30
1798 1956 0.965439 GGGATGATGAGGAGGACGAG 59.035 60.000 0.00 0.00 0.00 4.18
1801 1959 1.885887 GATGATGAGGAGGACGAGGAG 59.114 57.143 0.00 0.00 0.00 3.69
1822 1980 5.010012 GGAGAACAACAAGAAACATGATGGT 59.990 40.000 0.00 0.00 0.00 3.55
1838 1996 0.618458 TGGTGACATTGTAGCCTCCC 59.382 55.000 9.59 0.00 33.40 4.30
1839 1997 0.107165 GGTGACATTGTAGCCTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
1867 2025 1.151668 GTCAGCTAGCATAATGGCGG 58.848 55.000 18.83 0.00 39.27 6.13
1869 2027 1.302832 AGCTAGCATAATGGCGGCC 60.303 57.895 18.83 13.32 37.84 6.13
1871 2029 1.301716 CTAGCATAATGGCGGCCGT 60.302 57.895 28.70 11.99 39.27 5.68
1872 2030 1.568612 CTAGCATAATGGCGGCCGTG 61.569 60.000 28.70 17.03 39.27 4.94
1880 2038 3.755628 GGCGGCCGTGAGACAGTA 61.756 66.667 28.70 0.00 0.00 2.74
1960 2118 5.414765 CAGGGTGGAAAGACATAAAACCTAC 59.585 44.000 0.00 0.00 0.00 3.18
1964 2122 4.998672 TGGAAAGACATAAAACCTACACCG 59.001 41.667 0.00 0.00 0.00 4.94
1991 2149 9.624697 GCATTTCAATGACAAAACTATACTCAA 57.375 29.630 3.60 0.00 38.70 3.02
1999 2157 9.950680 ATGACAAAACTATACTCAACTTTGTTG 57.049 29.630 4.25 4.25 37.18 3.33
2029 2187 5.275788 CGCTTTGCTAGTTACGTACTGAATC 60.276 44.000 0.00 0.00 37.73 2.52
2036 2194 8.245491 TGCTAGTTACGTACTGAATCATTTGTA 58.755 33.333 0.00 0.00 37.73 2.41
2051 2209 4.021544 TCATTTGTAAACAGCCCATGGAAC 60.022 41.667 15.22 4.77 0.00 3.62
2075 2233 3.430895 ACCGTTAGTTAAATGTGCGACTG 59.569 43.478 0.00 0.00 0.00 3.51
2078 2236 4.665645 CGTTAGTTAAATGTGCGACTGGTG 60.666 45.833 0.00 0.00 0.00 4.17
2087 2245 2.032071 CGACTGGTGGGGTGGTTC 59.968 66.667 0.00 0.00 0.00 3.62
2088 2246 2.516888 CGACTGGTGGGGTGGTTCT 61.517 63.158 0.00 0.00 0.00 3.01
2089 2247 1.189524 CGACTGGTGGGGTGGTTCTA 61.190 60.000 0.00 0.00 0.00 2.10
2090 2248 0.323957 GACTGGTGGGGTGGTTCTAC 59.676 60.000 0.00 0.00 0.00 2.59
2091 2249 1.295423 CTGGTGGGGTGGTTCTACG 59.705 63.158 0.00 0.00 0.00 3.51
2092 2250 1.459921 TGGTGGGGTGGTTCTACGT 60.460 57.895 0.00 0.00 0.00 3.57
2093 2251 1.055551 TGGTGGGGTGGTTCTACGTT 61.056 55.000 0.00 0.00 0.00 3.99
2094 2252 0.109153 GGTGGGGTGGTTCTACGTTT 59.891 55.000 0.00 0.00 0.00 3.60
2095 2253 1.477377 GGTGGGGTGGTTCTACGTTTT 60.477 52.381 0.00 0.00 0.00 2.43
2096 2254 2.300433 GTGGGGTGGTTCTACGTTTTT 58.700 47.619 0.00 0.00 0.00 1.94
2236 2398 3.066760 CACACATGTCGCTACTCCTATCA 59.933 47.826 0.00 0.00 0.00 2.15
2358 2538 0.623723 AACTGGGTCACACACTGGTT 59.376 50.000 0.00 0.00 0.00 3.67
2368 2548 1.147376 ACACTGGTTTGGCGCACTA 59.853 52.632 10.83 0.00 0.00 2.74
2372 2574 1.164411 CTGGTTTGGCGCACTATCAA 58.836 50.000 10.83 0.00 0.00 2.57
2416 2618 1.062658 TGATCCATCTCCAGAGCAGGA 60.063 52.381 9.42 9.42 36.21 3.86
2499 2705 1.302431 CCTGCGTGTGTCCATCCAA 60.302 57.895 0.00 0.00 0.00 3.53
2585 2792 1.005097 TGTAACACCGCTCCTCCTCTA 59.995 52.381 0.00 0.00 0.00 2.43
2613 2824 2.173519 CCAACCATCACTTGCTCCAAT 58.826 47.619 0.00 0.00 0.00 3.16
2641 2852 1.764054 CCAGGAGGGGAAGCGAGAT 60.764 63.158 0.00 0.00 0.00 2.75
2642 2853 1.745264 CAGGAGGGGAAGCGAGATC 59.255 63.158 0.00 0.00 0.00 2.75
2707 2932 1.669115 CCGAGCCTGGTGACACAAG 60.669 63.158 8.08 5.33 35.60 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.153549 CGAAGAAGGCCTCGGGAAG 60.154 63.158 5.23 0.00 0.00 3.46
28 29 1.911766 ACGAAGAAGGCCTCGGGAA 60.912 57.895 5.23 0.00 0.00 3.97
29 30 2.283676 ACGAAGAAGGCCTCGGGA 60.284 61.111 5.23 0.00 0.00 5.14
30 31 2.125512 CACGAAGAAGGCCTCGGG 60.126 66.667 5.23 1.80 0.00 5.14
31 32 1.153745 CTCACGAAGAAGGCCTCGG 60.154 63.158 5.23 0.00 0.00 4.63
32 33 1.153745 CCTCACGAAGAAGGCCTCG 60.154 63.158 5.23 8.41 0.00 4.63
33 34 4.921834 CCTCACGAAGAAGGCCTC 57.078 61.111 5.23 0.00 0.00 4.70
37 38 2.035632 AGGATAGCCTCACGAAGAAGG 58.964 52.381 0.00 0.00 42.19 3.46
49 50 1.067495 GGCGTATGTGAGAGGATAGCC 60.067 57.143 0.00 0.00 35.00 3.93
50 51 1.401670 CGGCGTATGTGAGAGGATAGC 60.402 57.143 0.00 0.00 0.00 2.97
51 52 1.880675 ACGGCGTATGTGAGAGGATAG 59.119 52.381 12.58 0.00 0.00 2.08
52 53 1.878088 GACGGCGTATGTGAGAGGATA 59.122 52.381 14.74 0.00 0.00 2.59
53 54 0.669077 GACGGCGTATGTGAGAGGAT 59.331 55.000 14.74 0.00 0.00 3.24
54 55 1.712018 CGACGGCGTATGTGAGAGGA 61.712 60.000 14.74 0.00 0.00 3.71
55 56 1.298413 CGACGGCGTATGTGAGAGG 60.298 63.158 14.74 0.00 0.00 3.69
56 57 1.298413 CCGACGGCGTATGTGAGAG 60.298 63.158 14.74 0.00 35.23 3.20
57 58 2.795973 CCGACGGCGTATGTGAGA 59.204 61.111 14.74 0.00 35.23 3.27
58 59 2.954868 GCCGACGGCGTATGTGAG 60.955 66.667 25.24 0.00 39.62 3.51
84 85 4.520846 GCCGTGGCAAATCGCGAG 62.521 66.667 16.66 1.42 43.84 5.03
104 105 7.820872 AGATGATTTAAAGAAAATGCCAAGTGG 59.179 33.333 0.00 0.00 37.93 4.00
105 106 8.653338 CAGATGATTTAAAGAAAATGCCAAGTG 58.347 33.333 0.00 0.00 37.93 3.16
106 107 7.820872 CCAGATGATTTAAAGAAAATGCCAAGT 59.179 33.333 0.00 0.00 37.93 3.16
107 108 7.201582 GCCAGATGATTTAAAGAAAATGCCAAG 60.202 37.037 0.00 0.00 37.93 3.61
108 109 6.594937 GCCAGATGATTTAAAGAAAATGCCAA 59.405 34.615 0.00 0.00 37.93 4.52
109 110 6.070653 AGCCAGATGATTTAAAGAAAATGCCA 60.071 34.615 0.00 0.00 37.93 4.92
110 111 6.343703 AGCCAGATGATTTAAAGAAAATGCC 58.656 36.000 0.00 0.00 37.93 4.40
111 112 7.838771 AAGCCAGATGATTTAAAGAAAATGC 57.161 32.000 0.00 0.00 37.93 3.56
114 115 9.912634 CAACTAAGCCAGATGATTTAAAGAAAA 57.087 29.630 0.00 0.00 0.00 2.29
115 116 9.077885 ACAACTAAGCCAGATGATTTAAAGAAA 57.922 29.630 0.00 0.00 31.69 2.52
116 117 8.514594 CACAACTAAGCCAGATGATTTAAAGAA 58.485 33.333 0.00 0.00 31.69 2.52
117 118 7.665559 ACACAACTAAGCCAGATGATTTAAAGA 59.334 33.333 0.00 0.00 31.69 2.52
118 119 7.820648 ACACAACTAAGCCAGATGATTTAAAG 58.179 34.615 0.00 0.00 31.69 1.85
119 120 7.759489 ACACAACTAAGCCAGATGATTTAAA 57.241 32.000 0.00 0.00 31.69 1.52
120 121 7.446931 TCAACACAACTAAGCCAGATGATTTAA 59.553 33.333 0.88 0.00 31.69 1.52
121 122 6.939730 TCAACACAACTAAGCCAGATGATTTA 59.060 34.615 0.88 0.00 31.69 1.40
122 123 5.769662 TCAACACAACTAAGCCAGATGATTT 59.230 36.000 0.88 0.00 31.69 2.17
123 124 5.182001 GTCAACACAACTAAGCCAGATGATT 59.818 40.000 0.88 0.00 31.69 2.57
124 125 4.697352 GTCAACACAACTAAGCCAGATGAT 59.303 41.667 0.88 0.00 31.69 2.45
125 126 4.065088 GTCAACACAACTAAGCCAGATGA 58.935 43.478 0.88 0.00 31.69 2.92
126 127 4.067896 AGTCAACACAACTAAGCCAGATG 58.932 43.478 0.00 0.00 33.40 2.90
127 128 4.040952 AGAGTCAACACAACTAAGCCAGAT 59.959 41.667 0.00 0.00 0.00 2.90
128 129 3.388024 AGAGTCAACACAACTAAGCCAGA 59.612 43.478 0.00 0.00 0.00 3.86
129 130 3.496130 CAGAGTCAACACAACTAAGCCAG 59.504 47.826 0.00 0.00 0.00 4.85
130 131 3.466836 CAGAGTCAACACAACTAAGCCA 58.533 45.455 0.00 0.00 0.00 4.75
131 132 2.808543 CCAGAGTCAACACAACTAAGCC 59.191 50.000 0.00 0.00 0.00 4.35
132 133 3.467803 ACCAGAGTCAACACAACTAAGC 58.532 45.455 0.00 0.00 0.00 3.09
145 146 2.533266 TTTGAGTGCTGACCAGAGTC 57.467 50.000 0.47 0.47 43.83 3.36
146 147 2.565841 GTTTTGAGTGCTGACCAGAGT 58.434 47.619 0.47 0.00 0.00 3.24
147 148 1.876156 GGTTTTGAGTGCTGACCAGAG 59.124 52.381 0.47 0.00 0.00 3.35
148 149 1.810031 CGGTTTTGAGTGCTGACCAGA 60.810 52.381 0.47 0.00 0.00 3.86
149 150 0.588252 CGGTTTTGAGTGCTGACCAG 59.412 55.000 0.00 0.00 0.00 4.00
150 151 0.817634 CCGGTTTTGAGTGCTGACCA 60.818 55.000 0.00 0.00 0.00 4.02
151 152 0.818040 ACCGGTTTTGAGTGCTGACC 60.818 55.000 0.00 0.00 0.00 4.02
152 153 1.021968 AACCGGTTTTGAGTGCTGAC 58.978 50.000 15.86 0.00 0.00 3.51
153 154 1.673920 GAAACCGGTTTTGAGTGCTGA 59.326 47.619 32.06 0.00 32.11 4.26
154 155 1.403679 TGAAACCGGTTTTGAGTGCTG 59.596 47.619 32.06 0.00 32.11 4.41
155 156 1.757682 TGAAACCGGTTTTGAGTGCT 58.242 45.000 32.06 8.94 32.11 4.40
156 157 2.570442 TTGAAACCGGTTTTGAGTGC 57.430 45.000 32.06 18.86 32.11 4.40
157 158 3.796178 CACATTGAAACCGGTTTTGAGTG 59.204 43.478 32.06 28.57 32.11 3.51
158 159 3.697045 TCACATTGAAACCGGTTTTGAGT 59.303 39.130 32.06 23.42 32.11 3.41
159 160 4.041723 GTCACATTGAAACCGGTTTTGAG 58.958 43.478 32.06 23.34 32.11 3.02
160 161 3.181485 GGTCACATTGAAACCGGTTTTGA 60.181 43.478 32.06 26.31 32.11 2.69
161 162 3.120041 GGTCACATTGAAACCGGTTTTG 58.880 45.455 32.06 26.84 32.11 2.44
162 163 2.101750 GGGTCACATTGAAACCGGTTTT 59.898 45.455 32.06 15.28 33.69 2.43
163 164 1.684450 GGGTCACATTGAAACCGGTTT 59.316 47.619 32.08 32.08 33.69 3.27
164 165 1.324383 GGGTCACATTGAAACCGGTT 58.676 50.000 15.86 15.86 33.69 4.44
165 166 0.183971 TGGGTCACATTGAAACCGGT 59.816 50.000 0.00 0.00 33.69 5.28
166 167 1.323412 TTGGGTCACATTGAAACCGG 58.677 50.000 0.00 0.00 33.69 5.28
167 168 3.444703 TTTTGGGTCACATTGAAACCG 57.555 42.857 0.00 0.00 33.69 4.44
168 169 4.749598 GTGATTTTGGGTCACATTGAAACC 59.250 41.667 1.69 0.00 44.13 3.27
169 170 5.600696 AGTGATTTTGGGTCACATTGAAAC 58.399 37.500 8.73 0.00 46.46 2.78
170 171 5.867903 AGTGATTTTGGGTCACATTGAAA 57.132 34.783 8.73 0.00 46.46 2.69
171 172 5.049060 CGTAGTGATTTTGGGTCACATTGAA 60.049 40.000 8.73 0.00 46.46 2.69
172 173 4.454161 CGTAGTGATTTTGGGTCACATTGA 59.546 41.667 8.73 0.00 46.46 2.57
173 174 4.379394 CCGTAGTGATTTTGGGTCACATTG 60.379 45.833 8.73 0.00 46.46 2.82
174 175 3.756434 CCGTAGTGATTTTGGGTCACATT 59.244 43.478 8.73 0.00 46.46 2.71
175 176 3.343617 CCGTAGTGATTTTGGGTCACAT 58.656 45.455 8.73 0.00 46.46 3.21
176 177 2.551287 CCCGTAGTGATTTTGGGTCACA 60.551 50.000 8.73 0.00 46.46 3.58
177 178 2.081462 CCCGTAGTGATTTTGGGTCAC 58.919 52.381 0.00 0.00 44.85 3.67
178 179 1.003812 CCCCGTAGTGATTTTGGGTCA 59.996 52.381 0.00 0.00 38.23 4.02
179 180 1.746470 CCCCGTAGTGATTTTGGGTC 58.254 55.000 0.00 0.00 38.23 4.46
180 181 0.323087 GCCCCGTAGTGATTTTGGGT 60.323 55.000 0.00 0.00 38.23 4.51
181 182 0.034477 AGCCCCGTAGTGATTTTGGG 60.034 55.000 0.00 0.00 39.69 4.12
182 183 1.472480 CAAGCCCCGTAGTGATTTTGG 59.528 52.381 0.00 0.00 0.00 3.28
183 184 2.432444 TCAAGCCCCGTAGTGATTTTG 58.568 47.619 0.00 0.00 0.00 2.44
184 185 2.871096 TCAAGCCCCGTAGTGATTTT 57.129 45.000 0.00 0.00 0.00 1.82
185 186 3.366052 AATCAAGCCCCGTAGTGATTT 57.634 42.857 0.00 0.00 37.41 2.17
186 187 3.366052 AAATCAAGCCCCGTAGTGATT 57.634 42.857 0.00 0.00 41.34 2.57
187 188 4.505039 GGATAAATCAAGCCCCGTAGTGAT 60.505 45.833 0.00 0.00 32.09 3.06
188 189 3.181458 GGATAAATCAAGCCCCGTAGTGA 60.181 47.826 0.00 0.00 0.00 3.41
189 190 3.139077 GGATAAATCAAGCCCCGTAGTG 58.861 50.000 0.00 0.00 0.00 2.74
190 191 2.224209 CGGATAAATCAAGCCCCGTAGT 60.224 50.000 0.00 0.00 33.02 2.73
191 192 2.413837 CGGATAAATCAAGCCCCGTAG 58.586 52.381 0.00 0.00 33.02 3.51
192 193 1.071071 CCGGATAAATCAAGCCCCGTA 59.929 52.381 0.00 0.00 35.61 4.02
193 194 0.179029 CCGGATAAATCAAGCCCCGT 60.179 55.000 0.00 0.00 35.61 5.28
194 195 0.179029 ACCGGATAAATCAAGCCCCG 60.179 55.000 9.46 0.00 36.98 5.73
195 196 2.067365 AACCGGATAAATCAAGCCCC 57.933 50.000 9.46 0.00 0.00 5.80
196 197 3.445805 TCAAAACCGGATAAATCAAGCCC 59.554 43.478 9.46 0.00 0.00 5.19
197 198 4.082463 TGTCAAAACCGGATAAATCAAGCC 60.082 41.667 9.46 0.00 0.00 4.35
198 199 5.054390 TGTCAAAACCGGATAAATCAAGC 57.946 39.130 9.46 0.00 0.00 4.01
199 200 8.434661 CAAATTGTCAAAACCGGATAAATCAAG 58.565 33.333 9.46 0.00 0.00 3.02
200 201 8.144478 TCAAATTGTCAAAACCGGATAAATCAA 58.856 29.630 9.46 7.36 0.00 2.57
201 202 7.661968 TCAAATTGTCAAAACCGGATAAATCA 58.338 30.769 9.46 0.00 0.00 2.57
202 203 7.275560 CCTCAAATTGTCAAAACCGGATAAATC 59.724 37.037 9.46 0.00 0.00 2.17
203 204 7.096551 CCTCAAATTGTCAAAACCGGATAAAT 58.903 34.615 9.46 0.00 0.00 1.40
204 205 6.451393 CCTCAAATTGTCAAAACCGGATAAA 58.549 36.000 9.46 0.00 0.00 1.40
205 206 5.047660 CCCTCAAATTGTCAAAACCGGATAA 60.048 40.000 9.46 0.00 0.00 1.75
206 207 4.461081 CCCTCAAATTGTCAAAACCGGATA 59.539 41.667 9.46 0.00 0.00 2.59
207 208 3.258123 CCCTCAAATTGTCAAAACCGGAT 59.742 43.478 9.46 0.00 0.00 4.18
208 209 2.625790 CCCTCAAATTGTCAAAACCGGA 59.374 45.455 9.46 0.00 0.00 5.14
209 210 2.288763 CCCCTCAAATTGTCAAAACCGG 60.289 50.000 0.00 0.00 0.00 5.28
210 211 2.288763 CCCCCTCAAATTGTCAAAACCG 60.289 50.000 0.00 0.00 0.00 4.44
211 212 2.703536 ACCCCCTCAAATTGTCAAAACC 59.296 45.455 0.00 0.00 0.00 3.27
212 213 5.538849 TTACCCCCTCAAATTGTCAAAAC 57.461 39.130 0.00 0.00 0.00 2.43
213 214 6.755542 ATTTACCCCCTCAAATTGTCAAAA 57.244 33.333 0.00 0.00 0.00 2.44
214 215 6.755542 AATTTACCCCCTCAAATTGTCAAA 57.244 33.333 0.00 0.00 34.04 2.69
215 216 9.722317 ATATAATTTACCCCCTCAAATTGTCAA 57.278 29.630 0.00 0.00 35.64 3.18
216 217 9.142014 CATATAATTTACCCCCTCAAATTGTCA 57.858 33.333 0.00 0.00 35.64 3.58
217 218 8.585018 CCATATAATTTACCCCCTCAAATTGTC 58.415 37.037 0.00 0.00 35.64 3.18
218 219 8.071229 ACCATATAATTTACCCCCTCAAATTGT 58.929 33.333 0.00 0.00 35.64 2.71
219 220 8.491045 ACCATATAATTTACCCCCTCAAATTG 57.509 34.615 0.00 0.00 35.64 2.32
222 223 9.594936 CAATACCATATAATTTACCCCCTCAAA 57.405 33.333 0.00 0.00 0.00 2.69
223 224 8.174085 CCAATACCATATAATTTACCCCCTCAA 58.826 37.037 0.00 0.00 0.00 3.02
224 225 7.521468 TCCAATACCATATAATTTACCCCCTCA 59.479 37.037 0.00 0.00 0.00 3.86
225 226 7.935405 TCCAATACCATATAATTTACCCCCTC 58.065 38.462 0.00 0.00 0.00 4.30
226 227 7.523239 ACTCCAATACCATATAATTTACCCCCT 59.477 37.037 0.00 0.00 0.00 4.79
227 228 7.705700 ACTCCAATACCATATAATTTACCCCC 58.294 38.462 0.00 0.00 0.00 5.40
228 229 9.239551 GAACTCCAATACCATATAATTTACCCC 57.760 37.037 0.00 0.00 0.00 4.95
229 230 9.802039 TGAACTCCAATACCATATAATTTACCC 57.198 33.333 0.00 0.00 0.00 3.69
233 234 7.950124 CCCCTGAACTCCAATACCATATAATTT 59.050 37.037 0.00 0.00 0.00 1.82
234 235 7.470192 CCCCTGAACTCCAATACCATATAATT 58.530 38.462 0.00 0.00 0.00 1.40
235 236 6.011628 CCCCCTGAACTCCAATACCATATAAT 60.012 42.308 0.00 0.00 0.00 1.28
236 237 5.312178 CCCCCTGAACTCCAATACCATATAA 59.688 44.000 0.00 0.00 0.00 0.98
237 238 4.849810 CCCCCTGAACTCCAATACCATATA 59.150 45.833 0.00 0.00 0.00 0.86
238 239 3.657727 CCCCCTGAACTCCAATACCATAT 59.342 47.826 0.00 0.00 0.00 1.78
239 240 3.053077 CCCCCTGAACTCCAATACCATA 58.947 50.000 0.00 0.00 0.00 2.74
240 241 1.852965 CCCCCTGAACTCCAATACCAT 59.147 52.381 0.00 0.00 0.00 3.55
241 242 1.295020 CCCCCTGAACTCCAATACCA 58.705 55.000 0.00 0.00 0.00 3.25
242 243 1.296002 ACCCCCTGAACTCCAATACC 58.704 55.000 0.00 0.00 0.00 2.73
243 244 4.461198 CATAACCCCCTGAACTCCAATAC 58.539 47.826 0.00 0.00 0.00 1.89
244 245 3.461831 CCATAACCCCCTGAACTCCAATA 59.538 47.826 0.00 0.00 0.00 1.90
245 246 2.244769 CCATAACCCCCTGAACTCCAAT 59.755 50.000 0.00 0.00 0.00 3.16
246 247 1.638589 CCATAACCCCCTGAACTCCAA 59.361 52.381 0.00 0.00 0.00 3.53
247 248 1.203505 TCCATAACCCCCTGAACTCCA 60.204 52.381 0.00 0.00 0.00 3.86
248 249 1.591768 TCCATAACCCCCTGAACTCC 58.408 55.000 0.00 0.00 0.00 3.85
249 250 2.106684 GGATCCATAACCCCCTGAACTC 59.893 54.545 6.95 0.00 0.00 3.01
250 251 2.136026 GGATCCATAACCCCCTGAACT 58.864 52.381 6.95 0.00 0.00 3.01
251 252 1.850345 TGGATCCATAACCCCCTGAAC 59.150 52.381 11.44 0.00 0.00 3.18
252 253 2.295269 TGGATCCATAACCCCCTGAA 57.705 50.000 11.44 0.00 0.00 3.02
253 254 2.348472 GATGGATCCATAACCCCCTGA 58.652 52.381 27.38 0.00 36.70 3.86
254 255 2.065007 TGATGGATCCATAACCCCCTG 58.935 52.381 27.38 0.00 36.70 4.45
255 256 2.531177 TGATGGATCCATAACCCCCT 57.469 50.000 27.38 3.19 36.70 4.79
256 257 3.833559 ATTGATGGATCCATAACCCCC 57.166 47.619 27.38 13.96 36.70 5.40
270 271 4.482030 TCCCCCACAAATCCATATTGATG 58.518 43.478 0.00 0.00 0.00 3.07
271 272 4.830717 TCCCCCACAAATCCATATTGAT 57.169 40.909 0.00 0.00 0.00 2.57
272 273 4.616671 TTCCCCCACAAATCCATATTGA 57.383 40.909 0.00 0.00 0.00 2.57
273 274 5.189539 AGTTTTCCCCCACAAATCCATATTG 59.810 40.000 0.00 0.00 0.00 1.90
274 275 5.349690 AGTTTTCCCCCACAAATCCATATT 58.650 37.500 0.00 0.00 0.00 1.28
275 276 4.959080 AGTTTTCCCCCACAAATCCATAT 58.041 39.130 0.00 0.00 0.00 1.78
276 277 4.412060 AGTTTTCCCCCACAAATCCATA 57.588 40.909 0.00 0.00 0.00 2.74
277 278 3.274281 AGTTTTCCCCCACAAATCCAT 57.726 42.857 0.00 0.00 0.00 3.41
278 279 2.785357 AGTTTTCCCCCACAAATCCA 57.215 45.000 0.00 0.00 0.00 3.41
279 280 5.516044 AGTATAGTTTTCCCCCACAAATCC 58.484 41.667 0.00 0.00 0.00 3.01
280 281 6.184789 TGAGTATAGTTTTCCCCCACAAATC 58.815 40.000 0.00 0.00 0.00 2.17
281 282 6.147437 TGAGTATAGTTTTCCCCCACAAAT 57.853 37.500 0.00 0.00 0.00 2.32
282 283 5.586155 TGAGTATAGTTTTCCCCCACAAA 57.414 39.130 0.00 0.00 0.00 2.83
283 284 5.586155 TTGAGTATAGTTTTCCCCCACAA 57.414 39.130 0.00 0.00 0.00 3.33
284 285 5.505780 CATTGAGTATAGTTTTCCCCCACA 58.494 41.667 0.00 0.00 0.00 4.17
285 286 4.338400 GCATTGAGTATAGTTTTCCCCCAC 59.662 45.833 0.00 0.00 0.00 4.61
286 287 4.229582 AGCATTGAGTATAGTTTTCCCCCA 59.770 41.667 0.00 0.00 0.00 4.96
287 288 4.793201 AGCATTGAGTATAGTTTTCCCCC 58.207 43.478 0.00 0.00 0.00 5.40
288 289 5.763698 GGTAGCATTGAGTATAGTTTTCCCC 59.236 44.000 0.00 0.00 0.00 4.81
289 290 5.763698 GGGTAGCATTGAGTATAGTTTTCCC 59.236 44.000 0.00 0.00 0.00 3.97
290 291 6.592870 AGGGTAGCATTGAGTATAGTTTTCC 58.407 40.000 0.00 0.00 0.00 3.13
291 292 9.780186 ATAAGGGTAGCATTGAGTATAGTTTTC 57.220 33.333 1.41 0.00 0.00 2.29
295 296 9.561069 CAAAATAAGGGTAGCATTGAGTATAGT 57.439 33.333 1.41 0.00 0.00 2.12
296 297 8.507249 GCAAAATAAGGGTAGCATTGAGTATAG 58.493 37.037 1.41 0.00 0.00 1.31
297 298 8.217799 AGCAAAATAAGGGTAGCATTGAGTATA 58.782 33.333 1.41 0.00 0.00 1.47
298 299 7.062957 AGCAAAATAAGGGTAGCATTGAGTAT 58.937 34.615 1.41 0.00 0.00 2.12
299 300 6.423182 AGCAAAATAAGGGTAGCATTGAGTA 58.577 36.000 1.41 0.00 0.00 2.59
300 301 5.264395 AGCAAAATAAGGGTAGCATTGAGT 58.736 37.500 1.41 0.00 0.00 3.41
301 302 5.357878 TGAGCAAAATAAGGGTAGCATTGAG 59.642 40.000 1.41 0.00 0.00 3.02
302 303 5.260424 TGAGCAAAATAAGGGTAGCATTGA 58.740 37.500 1.41 0.00 0.00 2.57
334 335 4.693283 TCGAGAACATAAGGGTAGCATTG 58.307 43.478 1.41 0.00 0.00 2.82
336 337 5.353394 TTTCGAGAACATAAGGGTAGCAT 57.647 39.130 0.00 0.00 0.00 3.79
337 338 4.811969 TTTCGAGAACATAAGGGTAGCA 57.188 40.909 0.00 0.00 0.00 3.49
410 414 5.182950 CAGTCCCATATGTTTGTGCAGTAAA 59.817 40.000 1.24 0.00 0.00 2.01
481 486 1.228003 TCCGCTTTCCCGCAAAAGA 60.228 52.632 10.80 0.00 38.30 2.52
482 487 1.210155 CTCCGCTTTCCCGCAAAAG 59.790 57.895 4.01 4.01 38.91 2.27
599 604 2.006888 CCGATATGTTTGGCTTGTCGT 58.993 47.619 0.00 0.00 35.28 4.34
647 652 5.591099 ACTCAATGTTTTGTGTGGAATCAC 58.409 37.500 0.00 0.00 43.87 3.06
705 710 8.635765 TCTCACTAGCACAAGGAAAAATAAAT 57.364 30.769 0.00 0.00 0.00 1.40
747 760 3.864789 AGGAATGCTTACTATGTGGGG 57.135 47.619 0.00 0.00 0.00 4.96
790 812 8.947115 GGGAAATCTATGCATGTACTAATTACC 58.053 37.037 10.16 1.95 0.00 2.85
797 819 3.391296 ACGGGGAAATCTATGCATGTACT 59.609 43.478 10.16 0.00 0.00 2.73
864 886 2.523841 TTGGATCCATTAGGGGCCTA 57.476 50.000 17.06 0.00 37.22 3.93
909 931 2.540101 CCTGCTGCGTGCTAAGTAATAC 59.460 50.000 0.00 0.00 43.37 1.89
910 932 2.429250 TCCTGCTGCGTGCTAAGTAATA 59.571 45.455 0.00 0.00 43.37 0.98
911 933 1.207089 TCCTGCTGCGTGCTAAGTAAT 59.793 47.619 0.00 0.00 43.37 1.89
923 945 0.102844 TTGCTTTGTTGTCCTGCTGC 59.897 50.000 0.00 0.00 0.00 5.25
932 954 2.807967 TGAGAGGATCGTTGCTTTGTTG 59.192 45.455 0.00 0.00 42.67 3.33
981 1007 2.967459 TTGTTGATGCTTGCAGTACG 57.033 45.000 0.87 0.00 0.00 3.67
982 1008 3.504863 CCATTGTTGATGCTTGCAGTAC 58.495 45.455 0.87 0.29 34.25 2.73
983 1009 2.094597 GCCATTGTTGATGCTTGCAGTA 60.095 45.455 0.87 0.00 34.25 2.74
984 1010 1.337447 GCCATTGTTGATGCTTGCAGT 60.337 47.619 0.87 0.00 34.25 4.40
1050 1076 0.110192 CGAAAACGAAGGCCTTCAGC 60.110 55.000 37.88 22.56 39.46 4.26
1051 1077 0.517316 CCGAAAACGAAGGCCTTCAG 59.483 55.000 37.88 31.31 39.46 3.02
1104 1130 4.633126 ACGAATGAACCAGATGAACATGAG 59.367 41.667 0.00 0.00 0.00 2.90
1107 1133 4.093408 CGAACGAATGAACCAGATGAACAT 59.907 41.667 0.00 0.00 0.00 2.71
1131 1157 9.691362 AAACAATGACCTAATAATCAACACAAC 57.309 29.630 0.00 0.00 0.00 3.32
1150 1176 9.257865 CGTAGGTTTAGTATTTTCGAAACAATG 57.742 33.333 10.79 0.00 35.64 2.82
1179 1205 2.594303 CTGCAACCGACCAAGGCA 60.594 61.111 0.00 0.00 33.69 4.75
1180 1206 4.043200 GCTGCAACCGACCAAGGC 62.043 66.667 0.00 0.00 33.69 4.35
1181 1207 3.365265 GGCTGCAACCGACCAAGG 61.365 66.667 0.50 0.00 37.30 3.61
1183 1209 2.281484 GAGGCTGCAACCGACCAA 60.281 61.111 0.50 0.00 33.69 3.67
1185 1211 2.743928 CTGAGGCTGCAACCGACC 60.744 66.667 0.50 0.00 33.69 4.79
1186 1212 1.569479 GAACTGAGGCTGCAACCGAC 61.569 60.000 0.50 0.04 33.69 4.79
1190 1217 0.884704 TTCCGAACTGAGGCTGCAAC 60.885 55.000 0.50 0.00 0.00 4.17
1283 1310 2.125461 CGATTAGCAGCGAGATCACA 57.875 50.000 0.00 0.00 0.00 3.58
1425 1452 4.117685 GGTTCATTTAGTTACTCGGCGAT 58.882 43.478 11.27 3.37 0.00 4.58
1452 1479 9.949174 TTGATGAACGACCATATTTGATAAATG 57.051 29.630 0.00 0.00 32.38 2.32
1458 1485 7.622893 TCATTTGATGAACGACCATATTTGA 57.377 32.000 0.00 0.00 36.11 2.69
1462 1620 6.994496 ACAGATCATTTGATGAACGACCATAT 59.006 34.615 0.00 0.00 43.50 1.78
1465 1623 4.578871 ACAGATCATTTGATGAACGACCA 58.421 39.130 0.00 0.00 43.50 4.02
1478 1636 7.259290 AGTTAACGTGACAAAACAGATCATT 57.741 32.000 0.00 0.00 0.00 2.57
1495 1653 7.849026 CCATCGACAAATGGTAATTAGTTAACG 59.151 37.037 0.00 0.00 41.18 3.18
1497 1655 8.047911 TCCCATCGACAAATGGTAATTAGTTAA 58.952 33.333 2.27 0.00 44.05 2.01
1514 1672 8.076178 CCTATTTTGACAATTAATCCCATCGAC 58.924 37.037 0.00 0.00 0.00 4.20
1529 1687 2.027561 CCGAGACCACCCTATTTTGACA 60.028 50.000 0.00 0.00 0.00 3.58
1530 1688 2.027469 ACCGAGACCACCCTATTTTGAC 60.027 50.000 0.00 0.00 0.00 3.18
1532 1690 2.290071 ACACCGAGACCACCCTATTTTG 60.290 50.000 0.00 0.00 0.00 2.44
1541 1699 2.710724 AAAGCCGACACCGAGACCAC 62.711 60.000 0.00 0.00 38.22 4.16
1552 1710 1.503542 CAGCATCACCAAAGCCGAC 59.496 57.895 0.00 0.00 0.00 4.79
1574 1732 2.750350 CTCCGCCTTGGTCACCTT 59.250 61.111 0.00 0.00 39.52 3.50
1575 1733 3.322466 CCTCCGCCTTGGTCACCT 61.322 66.667 0.00 0.00 39.52 4.00
1618 1776 3.799755 GTGCCGTCGGGTTGCATC 61.800 66.667 14.38 0.00 37.34 3.91
1627 1785 3.190849 CAGCTCATGGTGCCGTCG 61.191 66.667 7.76 0.00 34.79 5.12
1648 1806 0.250038 CCATCTTGCCCGTCATCGAT 60.250 55.000 0.00 0.00 39.71 3.59
1651 1809 1.154205 CGTCCATCTTGCCCGTCATC 61.154 60.000 0.00 0.00 0.00 2.92
1653 1811 2.264480 CGTCCATCTTGCCCGTCA 59.736 61.111 0.00 0.00 0.00 4.35
1654 1812 2.511600 CCGTCCATCTTGCCCGTC 60.512 66.667 0.00 0.00 0.00 4.79
1659 1817 1.648467 GAAGTGGCCGTCCATCTTGC 61.648 60.000 0.00 0.00 45.62 4.01
1792 1950 2.814280 TCTTGTTGTTCTCCTCGTCC 57.186 50.000 0.00 0.00 0.00 4.79
1793 1951 3.869246 TGTTTCTTGTTGTTCTCCTCGTC 59.131 43.478 0.00 0.00 0.00 4.20
1798 1956 5.010012 ACCATCATGTTTCTTGTTGTTCTCC 59.990 40.000 0.00 0.00 0.00 3.71
1801 1959 5.687285 GTCACCATCATGTTTCTTGTTGTTC 59.313 40.000 0.00 0.00 0.00 3.18
1822 1980 1.622607 CCGGGGAGGCTACAATGTCA 61.623 60.000 0.00 0.00 0.00 3.58
1838 1996 1.513158 CTAGCTGACTGTGGTCCGG 59.487 63.158 0.00 0.00 41.47 5.14
1839 1997 1.153745 GCTAGCTGACTGTGGTCCG 60.154 63.158 7.70 0.00 41.47 4.79
1867 2025 1.080025 GGTGGTACTGTCTCACGGC 60.080 63.158 0.00 0.00 32.65 5.68
1869 2027 1.340248 ACAAGGTGGTACTGTCTCACG 59.660 52.381 0.00 0.00 32.65 4.35
1871 2029 1.968493 GGACAAGGTGGTACTGTCTCA 59.032 52.381 10.84 0.00 0.00 3.27
1872 2030 1.968493 TGGACAAGGTGGTACTGTCTC 59.032 52.381 10.84 3.99 0.00 3.36
1880 2038 0.401738 CTCATGGTGGACAAGGTGGT 59.598 55.000 0.00 0.00 0.00 4.16
1960 2118 2.721274 TTGTCATTGAAATGCCGGTG 57.279 45.000 1.90 0.00 36.36 4.94
1964 2122 8.243426 TGAGTATAGTTTTGTCATTGAAATGCC 58.757 33.333 0.00 0.00 36.36 4.40
1991 2149 2.539476 CAAAGCGCTTTCCAACAAAGT 58.461 42.857 31.63 5.02 0.00 2.66
2019 2177 6.021596 GGCTGTTTACAAATGATTCAGTACG 58.978 40.000 0.00 0.00 0.00 3.67
2029 2187 4.244862 GTTCCATGGGCTGTTTACAAATG 58.755 43.478 13.02 0.00 0.00 2.32
2036 2194 1.047801 GGTTGTTCCATGGGCTGTTT 58.952 50.000 13.02 0.00 35.97 2.83
2051 2209 4.084223 AGTCGCACATTTAACTAACGGTTG 60.084 41.667 3.07 0.00 38.75 3.77
2059 2217 2.151202 CCACCAGTCGCACATTTAACT 58.849 47.619 0.00 0.00 0.00 2.24
2061 2219 1.529226 CCCACCAGTCGCACATTTAA 58.471 50.000 0.00 0.00 0.00 1.52
2075 2233 0.109153 AAACGTAGAACCACCCCACC 59.891 55.000 0.00 0.00 0.00 4.61
2094 2252 4.202493 GGCCGGGTATATCCTCCTTAAAAA 60.202 45.833 2.18 0.00 36.25 1.94
2095 2253 3.328637 GGCCGGGTATATCCTCCTTAAAA 59.671 47.826 2.18 0.00 36.25 1.52
2096 2254 2.908351 GGCCGGGTATATCCTCCTTAAA 59.092 50.000 2.18 0.00 36.25 1.52
2097 2255 2.113052 AGGCCGGGTATATCCTCCTTAA 59.887 50.000 2.18 0.00 36.25 1.85
2098 2256 1.720533 AGGCCGGGTATATCCTCCTTA 59.279 52.381 2.18 0.00 36.25 2.69
2175 2337 6.468109 GCTTCGAGCTAACTGGTGTATTACC 61.468 48.000 0.00 0.00 43.40 2.85
2184 2346 0.741221 GGTGGCTTCGAGCTAACTGG 60.741 60.000 6.78 0.00 41.99 4.00
2189 2351 1.134699 CAAGATGGTGGCTTCGAGCTA 60.135 52.381 6.78 0.00 41.99 3.32
2358 2538 0.525761 GGCTTTTGATAGTGCGCCAA 59.474 50.000 4.18 0.00 37.48 4.52
2368 2548 3.747976 GTGGCGGCGGCTTTTGAT 61.748 61.111 33.21 0.00 39.81 2.57
2416 2618 1.021968 GCAAGGTTGGTTCGTCAGTT 58.978 50.000 0.00 0.00 0.00 3.16
2424 2626 2.524148 GGCCTGGCAAGGTTGGTT 60.524 61.111 22.05 0.00 46.43 3.67
2613 2824 2.445845 CCTCCTGGGGGCATCGTA 60.446 66.667 0.00 0.00 0.00 3.43
2639 2850 3.057596 GGTCTCTCAGATCGGACATGATC 60.058 52.174 0.00 0.00 44.13 2.92
2641 2852 2.302260 GGTCTCTCAGATCGGACATGA 58.698 52.381 0.00 0.00 0.00 3.07
2642 2853 1.339610 GGGTCTCTCAGATCGGACATG 59.660 57.143 0.00 0.00 0.00 3.21
2679 2904 3.474570 AGGCTCGGGATGCTCCAC 61.475 66.667 0.00 0.00 38.64 4.02
2680 2905 3.473647 CAGGCTCGGGATGCTCCA 61.474 66.667 0.00 0.00 38.64 3.86
2707 2932 3.088500 GAGGCATCGTCGTTGCAGC 62.089 63.158 25.10 14.65 41.95 5.25
2731 2956 1.798813 GGCGTCTTTGATGTCGTTTCT 59.201 47.619 0.00 0.00 0.00 2.52
2821 3046 1.615392 GTTGAAGGGAGCAGCAACATT 59.385 47.619 0.00 0.00 40.11 2.71
2826 3051 2.032528 CGGTTGAAGGGAGCAGCA 59.967 61.111 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.