Multiple sequence alignment - TraesCS3B01G604700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G604700 chr3B 100.000 3150 0 0 1 3150 823327283 823330432 0.000000e+00 5818.0
1 TraesCS3B01G604700 chr3B 94.420 2276 84 9 908 3149 82367761 82365495 0.000000e+00 3459.0
2 TraesCS3B01G604700 chr3B 94.758 1736 50 6 1436 3150 76134677 76132962 0.000000e+00 2663.0
3 TraesCS3B01G604700 chr3B 93.559 590 34 4 889 1478 76135262 76134677 0.000000e+00 876.0
4 TraesCS3B01G604700 chr3B 97.753 89 2 0 799 887 76135569 76135481 1.510000e-33 154.0
5 TraesCS3B01G604700 chr3B 92.553 94 6 1 795 887 806123311 806123404 1.970000e-27 134.0
6 TraesCS3B01G604700 chr6B 95.650 2299 62 9 881 3150 92572138 92574427 0.000000e+00 3657.0
7 TraesCS3B01G604700 chr6B 87.805 123 15 0 454 576 214916729 214916607 9.110000e-31 145.0
8 TraesCS3B01G604700 chr2A 94.359 2269 74 8 908 3150 710248911 710251151 0.000000e+00 3432.0
9 TraesCS3B01G604700 chr2A 93.333 90 6 0 798 887 722813851 722813762 1.970000e-27 134.0
10 TraesCS3B01G604700 chr5A 94.273 2270 76 10 908 3150 601209308 601207066 0.000000e+00 3422.0
11 TraesCS3B01G604700 chr5A 94.268 2268 75 7 908 3150 3991883 3994120 0.000000e+00 3417.0
12 TraesCS3B01G604700 chr7A 94.229 2270 71 9 908 3150 664221439 664219203 0.000000e+00 3411.0
13 TraesCS3B01G604700 chr4B 93.959 2268 82 7 908 3150 531077693 531079930 0.000000e+00 3378.0
14 TraesCS3B01G604700 chr4A 95.040 1976 62 8 1200 3150 507909080 507911044 0.000000e+00 3073.0
15 TraesCS3B01G604700 chr4A 83.887 391 45 15 40 420 6497494 6497876 1.070000e-94 357.0
16 TraesCS3B01G604700 chr4A 95.556 90 3 1 799 887 738541560 738541471 3.280000e-30 143.0
17 TraesCS3B01G604700 chr4A 100.000 39 0 0 1 39 537299118 537299080 4.360000e-09 73.1
18 TraesCS3B01G604700 chr4A 100.000 39 0 0 1 39 667059325 667059287 4.360000e-09 73.1
19 TraesCS3B01G604700 chr6A 94.790 1977 67 8 1200 3150 338113284 338115250 0.000000e+00 3048.0
20 TraesCS3B01G604700 chr7B 95.321 1496 49 6 889 2374 665248647 665247163 0.000000e+00 2355.0
21 TraesCS3B01G604700 chr7B 85.158 411 46 14 40 442 710141451 710141854 1.050000e-109 407.0
22 TraesCS3B01G604700 chr7B 85.825 388 44 9 40 420 529198785 529199168 4.890000e-108 401.0
23 TraesCS3B01G604700 chr7B 85.027 374 43 12 67 432 625951436 625951068 4.960000e-98 368.0
24 TraesCS3B01G604700 chr7B 95.556 90 4 0 798 887 665248955 665248866 9.110000e-31 145.0
25 TraesCS3B01G604700 chrUn 95.224 1026 25 5 2142 3150 359887181 359888199 0.000000e+00 1602.0
26 TraesCS3B01G604700 chr1B 85.530 387 45 10 40 420 632713753 632714134 8.190000e-106 394.0
27 TraesCS3B01G604700 chr1B 96.667 90 2 1 799 887 667628389 667628478 7.040000e-32 148.0
28 TraesCS3B01G604700 chr1B 86.719 128 16 1 453 579 405970260 405970133 1.180000e-29 141.0
29 TraesCS3B01G604700 chr7D 83.887 391 52 10 45 431 96502362 96501979 2.310000e-96 363.0
30 TraesCS3B01G604700 chr7D 82.367 414 38 17 45 453 556475385 556475002 8.420000e-86 327.0
31 TraesCS3B01G604700 chr7D 88.372 129 13 2 453 579 139869376 139869504 1.510000e-33 154.0
32 TraesCS3B01G604700 chr7D 100.000 39 0 0 1 39 46408138 46408176 4.360000e-09 73.1
33 TraesCS3B01G604700 chr7D 100.000 39 0 0 1 39 387216393 387216431 4.360000e-09 73.1
34 TraesCS3B01G604700 chr5D 82.381 420 60 13 40 451 413071374 413070961 1.390000e-93 353.0
35 TraesCS3B01G604700 chr5D 87.402 127 15 1 453 578 25300372 25300498 9.110000e-31 145.0
36 TraesCS3B01G604700 chr5D 86.719 128 17 0 451 578 25038537 25038664 3.280000e-30 143.0
37 TraesCS3B01G604700 chr5D 94.444 90 4 1 799 887 492268986 492269075 1.520000e-28 137.0
38 TraesCS3B01G604700 chr5D 100.000 39 0 0 1 39 450669263 450669225 4.360000e-09 73.1
39 TraesCS3B01G604700 chr1D 88.764 267 23 5 40 301 473031468 473031204 1.410000e-83 320.0
40 TraesCS3B01G604700 chr1D 100.000 39 0 0 1 39 467233693 467233655 4.360000e-09 73.1
41 TraesCS3B01G604700 chr1D 100.000 39 0 0 1 39 490571082 490571120 4.360000e-09 73.1
42 TraesCS3B01G604700 chr4D 90.598 117 10 1 463 579 507670138 507670253 1.510000e-33 154.0
43 TraesCS3B01G604700 chr1A 90.000 120 11 1 462 580 258006527 258006646 1.510000e-33 154.0
44 TraesCS3B01G604700 chr3D 89.076 119 12 1 462 579 36364227 36364345 2.530000e-31 147.0
45 TraesCS3B01G604700 chr3D 95.556 90 4 0 799 888 460523345 460523434 9.110000e-31 145.0
46 TraesCS3B01G604700 chr3D 86.364 132 16 2 453 582 22719564 22719695 3.280000e-30 143.0
47 TraesCS3B01G604700 chr5B 93.548 93 3 2 798 887 414965572 414965480 5.480000e-28 135.0
48 TraesCS3B01G604700 chr5B 100.000 40 0 0 1 40 547983378 547983417 1.210000e-09 75.0
49 TraesCS3B01G604700 chr5B 100.000 39 0 0 1 39 622529183 622529145 4.360000e-09 73.1
50 TraesCS3B01G604700 chr6D 75.889 253 43 15 184 429 429805584 429805825 2.570000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G604700 chr3B 823327283 823330432 3149 False 5818 5818 100.000000 1 3150 1 chr3B.!!$F2 3149
1 TraesCS3B01G604700 chr3B 82365495 82367761 2266 True 3459 3459 94.420000 908 3149 1 chr3B.!!$R1 2241
2 TraesCS3B01G604700 chr3B 76132962 76135569 2607 True 1231 2663 95.356667 799 3150 3 chr3B.!!$R2 2351
3 TraesCS3B01G604700 chr6B 92572138 92574427 2289 False 3657 3657 95.650000 881 3150 1 chr6B.!!$F1 2269
4 TraesCS3B01G604700 chr2A 710248911 710251151 2240 False 3432 3432 94.359000 908 3150 1 chr2A.!!$F1 2242
5 TraesCS3B01G604700 chr5A 601207066 601209308 2242 True 3422 3422 94.273000 908 3150 1 chr5A.!!$R1 2242
6 TraesCS3B01G604700 chr5A 3991883 3994120 2237 False 3417 3417 94.268000 908 3150 1 chr5A.!!$F1 2242
7 TraesCS3B01G604700 chr7A 664219203 664221439 2236 True 3411 3411 94.229000 908 3150 1 chr7A.!!$R1 2242
8 TraesCS3B01G604700 chr4B 531077693 531079930 2237 False 3378 3378 93.959000 908 3150 1 chr4B.!!$F1 2242
9 TraesCS3B01G604700 chr4A 507909080 507911044 1964 False 3073 3073 95.040000 1200 3150 1 chr4A.!!$F2 1950
10 TraesCS3B01G604700 chr6A 338113284 338115250 1966 False 3048 3048 94.790000 1200 3150 1 chr6A.!!$F1 1950
11 TraesCS3B01G604700 chr7B 665247163 665248955 1792 True 1250 2355 95.438500 798 2374 2 chr7B.!!$R2 1576
12 TraesCS3B01G604700 chrUn 359887181 359888199 1018 False 1602 1602 95.224000 2142 3150 1 chrUn.!!$F1 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.041312 CCACAAAACTCTCGCCAACG 60.041 55.0 0.0 0.0 42.01 4.10 F
26 27 0.041312 CACAAAACTCTCGCCAACGG 60.041 55.0 0.0 0.0 40.63 4.44 F
564 565 0.043183 TCCTGAAGGAGGGCTCATCA 59.957 55.0 0.0 0.0 43.06 3.07 F
786 787 0.108138 GCCCGCATTATCGCTAGGAT 60.108 55.0 0.0 0.0 39.25 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 1927 1.000283 CGTGCAAATTAGCCCCAACAA 60.000 47.619 0.00 0.0 0.00 2.83 R
1608 1935 1.476488 ACCATTCCCGTGCAAATTAGC 59.524 47.619 0.00 0.0 0.00 3.09 R
1617 1944 2.099592 CCATGAAATCACCATTCCCGTG 59.900 50.000 0.00 0.0 0.00 4.94 R
2213 2550 2.309764 GAATCGCCATCGTGCACCAC 62.310 60.000 12.15 0.0 36.96 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.825812 CGTGTGCCACAAAACTCTC 57.174 52.632 0.00 0.00 33.40 3.20
19 20 0.042188 CGTGTGCCACAAAACTCTCG 60.042 55.000 0.00 0.00 33.40 4.04
20 21 0.317020 GTGTGCCACAAAACTCTCGC 60.317 55.000 0.00 0.00 34.08 5.03
21 22 1.282875 GTGCCACAAAACTCTCGCC 59.717 57.895 0.00 0.00 0.00 5.54
22 23 1.153066 TGCCACAAAACTCTCGCCA 60.153 52.632 0.00 0.00 0.00 5.69
23 24 0.749818 TGCCACAAAACTCTCGCCAA 60.750 50.000 0.00 0.00 0.00 4.52
24 25 0.317854 GCCACAAAACTCTCGCCAAC 60.318 55.000 0.00 0.00 0.00 3.77
25 26 0.041312 CCACAAAACTCTCGCCAACG 60.041 55.000 0.00 0.00 42.01 4.10
26 27 0.041312 CACAAAACTCTCGCCAACGG 60.041 55.000 0.00 0.00 40.63 4.44
27 28 1.164041 ACAAAACTCTCGCCAACGGG 61.164 55.000 0.00 0.00 42.86 5.28
37 38 4.473643 CCAACGGGCAGTCAAAGA 57.526 55.556 0.00 0.00 0.00 2.52
38 39 2.714259 CCAACGGGCAGTCAAAGAA 58.286 52.632 0.00 0.00 0.00 2.52
39 40 1.028905 CCAACGGGCAGTCAAAGAAA 58.971 50.000 0.00 0.00 0.00 2.52
40 41 1.613437 CCAACGGGCAGTCAAAGAAAT 59.387 47.619 0.00 0.00 0.00 2.17
41 42 2.607771 CCAACGGGCAGTCAAAGAAATG 60.608 50.000 0.00 0.00 0.00 2.32
42 43 1.981256 ACGGGCAGTCAAAGAAATGT 58.019 45.000 0.00 0.00 0.00 2.71
43 44 1.880027 ACGGGCAGTCAAAGAAATGTC 59.120 47.619 0.00 0.00 0.00 3.06
44 45 1.879380 CGGGCAGTCAAAGAAATGTCA 59.121 47.619 0.00 0.00 0.00 3.58
45 46 2.293122 CGGGCAGTCAAAGAAATGTCAA 59.707 45.455 0.00 0.00 0.00 3.18
46 47 3.642705 GGGCAGTCAAAGAAATGTCAAC 58.357 45.455 0.00 0.00 0.00 3.18
47 48 3.300009 GGCAGTCAAAGAAATGTCAACG 58.700 45.455 0.00 0.00 0.00 4.10
48 49 3.243068 GGCAGTCAAAGAAATGTCAACGT 60.243 43.478 0.00 0.00 0.00 3.99
49 50 4.351192 GCAGTCAAAGAAATGTCAACGTT 58.649 39.130 0.00 0.00 0.00 3.99
50 51 4.798387 GCAGTCAAAGAAATGTCAACGTTT 59.202 37.500 0.00 0.05 37.74 3.60
51 52 5.968848 GCAGTCAAAGAAATGTCAACGTTTA 59.031 36.000 0.00 0.00 35.40 2.01
52 53 6.075572 GCAGTCAAAGAAATGTCAACGTTTAC 60.076 38.462 5.66 5.66 35.40 2.01
53 54 7.186804 CAGTCAAAGAAATGTCAACGTTTACT 58.813 34.615 13.37 0.00 35.40 2.24
54 55 7.164171 CAGTCAAAGAAATGTCAACGTTTACTG 59.836 37.037 13.37 10.78 35.40 2.74
55 56 6.964934 GTCAAAGAAATGTCAACGTTTACTGT 59.035 34.615 13.37 0.50 35.40 3.55
56 57 8.117988 GTCAAAGAAATGTCAACGTTTACTGTA 58.882 33.333 13.37 0.00 35.40 2.74
57 58 8.332464 TCAAAGAAATGTCAACGTTTACTGTAG 58.668 33.333 13.37 0.00 35.40 2.74
58 59 6.224420 AGAAATGTCAACGTTTACTGTAGC 57.776 37.500 13.37 0.88 35.40 3.58
59 60 4.640805 AATGTCAACGTTTACTGTAGCG 57.359 40.909 13.37 10.73 0.00 4.26
60 61 1.788308 TGTCAACGTTTACTGTAGCGC 59.212 47.619 13.37 0.00 0.00 5.92
61 62 2.056577 GTCAACGTTTACTGTAGCGCT 58.943 47.619 17.26 17.26 0.00 5.92
62 63 2.473984 GTCAACGTTTACTGTAGCGCTT 59.526 45.455 18.68 0.00 0.00 4.68
63 64 3.060070 GTCAACGTTTACTGTAGCGCTTT 60.060 43.478 18.68 0.00 0.00 3.51
64 65 3.060138 TCAACGTTTACTGTAGCGCTTTG 60.060 43.478 18.68 10.21 0.00 2.77
65 66 2.746269 ACGTTTACTGTAGCGCTTTGA 58.254 42.857 18.68 0.00 0.00 2.69
66 67 3.323243 ACGTTTACTGTAGCGCTTTGAT 58.677 40.909 18.68 1.60 0.00 2.57
67 68 3.744426 ACGTTTACTGTAGCGCTTTGATT 59.256 39.130 18.68 0.00 0.00 2.57
68 69 4.212636 ACGTTTACTGTAGCGCTTTGATTT 59.787 37.500 18.68 0.00 0.00 2.17
69 70 5.406175 ACGTTTACTGTAGCGCTTTGATTTA 59.594 36.000 18.68 0.00 0.00 1.40
70 71 6.073657 ACGTTTACTGTAGCGCTTTGATTTAA 60.074 34.615 18.68 3.47 0.00 1.52
71 72 6.959311 CGTTTACTGTAGCGCTTTGATTTAAT 59.041 34.615 18.68 0.00 0.00 1.40
72 73 7.162062 CGTTTACTGTAGCGCTTTGATTTAATC 59.838 37.037 18.68 4.96 0.00 1.75
73 74 7.843490 TTACTGTAGCGCTTTGATTTAATCT 57.157 32.000 18.68 0.00 0.00 2.40
74 75 6.743575 ACTGTAGCGCTTTGATTTAATCTT 57.256 33.333 18.68 0.00 0.00 2.40
75 76 7.145932 ACTGTAGCGCTTTGATTTAATCTTT 57.854 32.000 18.68 0.00 0.00 2.52
76 77 7.593825 ACTGTAGCGCTTTGATTTAATCTTTT 58.406 30.769 18.68 0.00 0.00 2.27
77 78 8.082242 ACTGTAGCGCTTTGATTTAATCTTTTT 58.918 29.630 18.68 0.00 0.00 1.94
78 79 8.226543 TGTAGCGCTTTGATTTAATCTTTTTG 57.773 30.769 18.68 0.00 0.00 2.44
79 80 8.079203 TGTAGCGCTTTGATTTAATCTTTTTGA 58.921 29.630 18.68 0.00 0.00 2.69
80 81 7.945033 AGCGCTTTGATTTAATCTTTTTGAA 57.055 28.000 2.64 0.00 0.00 2.69
81 82 8.364129 AGCGCTTTGATTTAATCTTTTTGAAA 57.636 26.923 2.64 0.00 0.00 2.69
82 83 8.992073 AGCGCTTTGATTTAATCTTTTTGAAAT 58.008 25.926 2.64 0.00 0.00 2.17
83 84 9.254421 GCGCTTTGATTTAATCTTTTTGAAATC 57.746 29.630 0.00 0.00 38.31 2.17
103 104 9.610705 TGAAATCATTTTGGAAAAAGTTCATGA 57.389 25.926 0.00 0.00 35.25 3.07
163 164 8.647226 AGTTCATTTTGAAAAAGAAAGTTCACG 58.353 29.630 9.53 0.00 38.22 4.35
164 165 8.643752 GTTCATTTTGAAAAAGAAAGTTCACGA 58.356 29.630 9.53 0.00 38.22 4.35
165 166 8.925161 TCATTTTGAAAAAGAAAGTTCACGAT 57.075 26.923 0.00 0.00 33.58 3.73
166 167 9.364989 TCATTTTGAAAAAGAAAGTTCACGATT 57.635 25.926 0.00 0.00 33.58 3.34
167 168 9.971744 CATTTTGAAAAAGAAAGTTCACGATTT 57.028 25.926 0.00 0.00 33.58 2.17
169 170 9.804547 TTTTGAAAAAGAAAGTTCACGATTTTG 57.195 25.926 0.00 0.00 33.58 2.44
170 171 8.749841 TTGAAAAAGAAAGTTCACGATTTTGA 57.250 26.923 0.00 0.00 33.58 2.69
171 172 8.393395 TGAAAAAGAAAGTTCACGATTTTGAG 57.607 30.769 0.00 0.00 0.00 3.02
172 173 8.240682 TGAAAAAGAAAGTTCACGATTTTGAGA 58.759 29.630 0.00 0.00 0.00 3.27
173 174 8.980143 AAAAAGAAAGTTCACGATTTTGAGAA 57.020 26.923 0.00 0.00 0.00 2.87
174 175 8.980143 AAAAGAAAGTTCACGATTTTGAGAAA 57.020 26.923 0.00 0.00 0.00 2.52
175 176 8.980143 AAAGAAAGTTCACGATTTTGAGAAAA 57.020 26.923 0.00 0.00 34.41 2.29
176 177 8.980143 AAGAAAGTTCACGATTTTGAGAAAAA 57.020 26.923 0.00 0.00 33.47 1.94
177 178 9.586435 AAGAAAGTTCACGATTTTGAGAAAAAT 57.414 25.926 0.00 0.00 35.26 1.82
178 179 9.237846 AGAAAGTTCACGATTTTGAGAAAAATC 57.762 29.630 11.98 11.98 42.67 2.17
200 201 9.981114 AAATCGTCTATCAATTTTGAAAAAGGT 57.019 25.926 0.00 0.00 41.13 3.50
201 202 9.981114 AATCGTCTATCAATTTTGAAAAAGGTT 57.019 25.926 0.00 0.00 41.13 3.50
202 203 9.626045 ATCGTCTATCAATTTTGAAAAAGGTTC 57.374 29.630 0.00 0.00 41.13 3.62
203 204 8.625651 TCGTCTATCAATTTTGAAAAAGGTTCA 58.374 29.630 0.00 0.00 41.13 3.18
204 205 9.410556 CGTCTATCAATTTTGAAAAAGGTTCAT 57.589 29.630 0.00 0.00 41.13 2.57
206 207 9.927668 TCTATCAATTTTGAAAAAGGTTCATCC 57.072 29.630 0.00 0.00 41.13 3.51
207 208 9.709495 CTATCAATTTTGAAAAAGGTTCATCCA 57.291 29.630 0.00 0.00 41.13 3.41
209 210 8.977267 TCAATTTTGAAAAAGGTTCATCCATT 57.023 26.923 0.00 0.00 34.64 3.16
210 211 9.406113 TCAATTTTGAAAAAGGTTCATCCATTT 57.594 25.926 0.00 0.00 38.54 2.32
211 212 9.453325 CAATTTTGAAAAAGGTTCATCCATTTG 57.547 29.630 0.00 0.00 37.22 2.32
212 213 7.565323 TTTTGAAAAAGGTTCATCCATTTGG 57.435 32.000 0.00 0.00 37.22 3.28
230 231 8.869109 TCCATTTGGAAAATAGTTCACAAATCT 58.131 29.630 12.12 0.00 42.18 2.40
231 232 9.492973 CCATTTGGAAAATAGTTCACAAATCTT 57.507 29.630 12.12 0.00 36.67 2.40
234 235 9.748708 TTTGGAAAATAGTTCACAAATCTTGAG 57.251 29.630 2.18 0.00 0.00 3.02
235 236 8.690203 TGGAAAATAGTTCACAAATCTTGAGA 57.310 30.769 0.00 0.00 0.00 3.27
236 237 9.130661 TGGAAAATAGTTCACAAATCTTGAGAA 57.869 29.630 0.00 0.00 37.80 2.87
237 238 9.965824 GGAAAATAGTTCACAAATCTTGAGAAA 57.034 29.630 1.61 0.00 40.88 2.52
343 344 9.500785 AAAAGTTTGAGATTTGGAAAAAGTTCA 57.499 25.926 0.00 0.00 35.25 3.18
344 345 9.671279 AAAGTTTGAGATTTGGAAAAAGTTCAT 57.329 25.926 0.00 0.00 35.25 2.57
345 346 9.671279 AAGTTTGAGATTTGGAAAAAGTTCATT 57.329 25.926 0.00 0.00 35.25 2.57
346 347 9.101655 AGTTTGAGATTTGGAAAAAGTTCATTG 57.898 29.630 0.00 0.00 35.25 2.82
347 348 9.097257 GTTTGAGATTTGGAAAAAGTTCATTGA 57.903 29.630 0.00 0.00 35.25 2.57
348 349 9.835389 TTTGAGATTTGGAAAAAGTTCATTGAT 57.165 25.926 0.00 0.00 35.25 2.57
349 350 9.835389 TTGAGATTTGGAAAAAGTTCATTGATT 57.165 25.926 0.00 0.00 35.25 2.57
350 351 9.835389 TGAGATTTGGAAAAAGTTCATTGATTT 57.165 25.926 0.00 0.00 35.25 2.17
353 354 9.667989 GATTTGGAAAAAGTTCATTGATTTTGG 57.332 29.630 2.11 0.00 35.25 3.28
354 355 8.798859 TTTGGAAAAAGTTCATTGATTTTGGA 57.201 26.923 2.11 0.00 35.25 3.53
355 356 8.798859 TTGGAAAAAGTTCATTGATTTTGGAA 57.201 26.923 2.11 0.00 35.25 3.53
356 357 8.798859 TGGAAAAAGTTCATTGATTTTGGAAA 57.201 26.923 2.11 0.00 35.25 3.13
357 358 9.236006 TGGAAAAAGTTCATTGATTTTGGAAAA 57.764 25.926 2.11 0.00 35.25 2.29
388 389 9.743057 ACAAAAATATGAAAAACTGTTCATCGA 57.257 25.926 3.80 0.00 43.24 3.59
395 396 8.870160 ATGAAAAACTGTTCATCGAATTTGAA 57.130 26.923 0.00 0.00 43.24 2.69
396 397 8.694975 TGAAAAACTGTTCATCGAATTTGAAA 57.305 26.923 0.00 0.00 35.03 2.69
397 398 9.144747 TGAAAAACTGTTCATCGAATTTGAAAA 57.855 25.926 0.00 0.00 35.03 2.29
398 399 9.965748 GAAAAACTGTTCATCGAATTTGAAAAA 57.034 25.926 0.00 0.00 35.03 1.94
400 401 9.919348 AAAACTGTTCATCGAATTTGAAAAATG 57.081 25.926 0.00 0.00 35.03 2.32
401 402 8.647143 AACTGTTCATCGAATTTGAAAAATGT 57.353 26.923 0.00 0.00 35.03 2.71
402 403 8.647143 ACTGTTCATCGAATTTGAAAAATGTT 57.353 26.923 0.00 0.00 35.03 2.71
403 404 8.755018 ACTGTTCATCGAATTTGAAAAATGTTC 58.245 29.630 0.00 0.00 35.03 3.18
404 405 8.640091 TGTTCATCGAATTTGAAAAATGTTCA 57.360 26.923 0.00 0.00 35.03 3.18
405 406 9.258826 TGTTCATCGAATTTGAAAAATGTTCAT 57.741 25.926 0.00 0.00 35.03 2.57
406 407 9.731519 GTTCATCGAATTTGAAAAATGTTCATC 57.268 29.630 0.00 0.00 35.03 2.92
407 408 8.160603 TCATCGAATTTGAAAAATGTTCATCG 57.839 30.769 0.00 2.23 32.74 3.84
408 409 8.020244 TCATCGAATTTGAAAAATGTTCATCGA 58.980 29.630 11.32 11.32 39.88 3.59
409 410 8.637704 CATCGAATTTGAAAAATGTTCATCGAA 58.362 29.630 12.51 0.00 39.38 3.71
410 411 8.567369 TCGAATTTGAAAAATGTTCATCGAAA 57.433 26.923 7.61 0.00 35.72 3.46
411 412 9.190858 TCGAATTTGAAAAATGTTCATCGAAAT 57.809 25.926 7.61 0.00 35.72 2.17
412 413 9.796062 CGAATTTGAAAAATGTTCATCGAAATT 57.204 25.926 2.43 0.00 33.04 1.82
442 443 8.667076 AAAAACTTCATCAAATCTGGAAAAGG 57.333 30.769 0.00 0.00 0.00 3.11
443 444 6.983906 AACTTCATCAAATCTGGAAAAGGT 57.016 33.333 0.00 0.00 0.00 3.50
444 445 6.983906 ACTTCATCAAATCTGGAAAAGGTT 57.016 33.333 0.00 0.00 0.00 3.50
445 446 7.365497 ACTTCATCAAATCTGGAAAAGGTTT 57.635 32.000 0.00 0.00 39.97 3.27
446 447 8.477419 ACTTCATCAAATCTGGAAAAGGTTTA 57.523 30.769 0.00 0.00 37.09 2.01
447 448 9.093458 ACTTCATCAAATCTGGAAAAGGTTTAT 57.907 29.630 0.00 0.00 37.09 1.40
448 449 9.578439 CTTCATCAAATCTGGAAAAGGTTTATC 57.422 33.333 0.00 0.00 37.09 1.75
449 450 7.761409 TCATCAAATCTGGAAAAGGTTTATCG 58.239 34.615 0.00 0.00 37.09 2.92
450 451 7.609918 TCATCAAATCTGGAAAAGGTTTATCGA 59.390 33.333 0.00 0.00 37.09 3.59
451 452 7.141100 TCAAATCTGGAAAAGGTTTATCGAC 57.859 36.000 0.00 0.00 37.09 4.20
452 453 6.712998 TCAAATCTGGAAAAGGTTTATCGACA 59.287 34.615 0.00 0.00 37.09 4.35
453 454 6.496338 AATCTGGAAAAGGTTTATCGACAC 57.504 37.500 0.00 0.00 0.00 3.67
454 455 3.991773 TCTGGAAAAGGTTTATCGACACG 59.008 43.478 0.00 0.00 0.00 4.49
455 456 3.731089 TGGAAAAGGTTTATCGACACGT 58.269 40.909 0.00 0.00 0.00 4.49
456 457 3.495377 TGGAAAAGGTTTATCGACACGTG 59.505 43.478 15.48 15.48 0.00 4.49
457 458 3.495753 GGAAAAGGTTTATCGACACGTGT 59.504 43.478 23.64 23.64 0.00 4.49
458 459 4.451557 GAAAAGGTTTATCGACACGTGTG 58.548 43.478 28.82 17.99 0.00 3.82
459 460 2.074547 AGGTTTATCGACACGTGTGG 57.925 50.000 28.82 25.61 34.19 4.17
460 461 1.073177 GGTTTATCGACACGTGTGGG 58.927 55.000 28.82 17.68 34.19 4.61
461 462 1.337074 GGTTTATCGACACGTGTGGGA 60.337 52.381 28.82 22.46 34.19 4.37
462 463 2.406130 GTTTATCGACACGTGTGGGAA 58.594 47.619 28.82 18.75 34.19 3.97
463 464 2.801679 GTTTATCGACACGTGTGGGAAA 59.198 45.455 28.82 22.97 34.19 3.13
464 465 2.816204 TATCGACACGTGTGGGAAAA 57.184 45.000 28.82 9.23 34.19 2.29
465 466 1.956297 ATCGACACGTGTGGGAAAAA 58.044 45.000 28.82 8.82 34.19 1.94
493 494 4.087892 GGAGCGCCCAGAGCTTGA 62.088 66.667 2.29 0.00 46.13 3.02
494 495 2.817396 GAGCGCCCAGAGCTTGAC 60.817 66.667 2.29 0.00 46.13 3.18
495 496 3.596066 GAGCGCCCAGAGCTTGACA 62.596 63.158 2.29 0.00 46.13 3.58
496 497 3.426568 GCGCCCAGAGCTTGACAC 61.427 66.667 0.00 0.00 40.39 3.67
497 498 2.031012 CGCCCAGAGCTTGACACA 59.969 61.111 0.00 0.00 40.39 3.72
498 499 1.376424 CGCCCAGAGCTTGACACAT 60.376 57.895 0.00 0.00 40.39 3.21
499 500 1.642037 CGCCCAGAGCTTGACACATG 61.642 60.000 0.00 0.00 40.39 3.21
500 501 1.310933 GCCCAGAGCTTGACACATGG 61.311 60.000 0.00 0.00 38.99 3.66
501 502 1.310933 CCCAGAGCTTGACACATGGC 61.311 60.000 0.00 0.00 0.00 4.40
502 503 1.642037 CCAGAGCTTGACACATGGCG 61.642 60.000 0.00 0.00 0.00 5.69
503 504 1.376424 AGAGCTTGACACATGGCGG 60.376 57.895 0.00 0.00 0.00 6.13
504 505 2.360350 AGCTTGACACATGGCGGG 60.360 61.111 0.00 0.00 0.00 6.13
505 506 2.359850 GCTTGACACATGGCGGGA 60.360 61.111 0.00 0.00 0.00 5.14
506 507 2.401766 GCTTGACACATGGCGGGAG 61.402 63.158 0.00 0.00 0.00 4.30
507 508 1.746615 CTTGACACATGGCGGGAGG 60.747 63.158 0.00 0.00 0.00 4.30
525 526 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
536 537 2.434884 CCAAGTGGCGCTGATCGT 60.435 61.111 7.64 0.00 41.07 3.73
537 538 2.034879 CCAAGTGGCGCTGATCGTT 61.035 57.895 7.64 0.00 41.07 3.85
538 539 1.133253 CAAGTGGCGCTGATCGTTG 59.867 57.895 7.64 0.00 41.07 4.10
539 540 1.301716 AAGTGGCGCTGATCGTTGT 60.302 52.632 7.64 0.00 41.07 3.32
540 541 1.568612 AAGTGGCGCTGATCGTTGTG 61.569 55.000 7.64 0.00 41.07 3.33
541 542 2.741985 TGGCGCTGATCGTTGTGG 60.742 61.111 7.64 0.00 41.07 4.17
542 543 3.499737 GGCGCTGATCGTTGTGGG 61.500 66.667 7.64 0.00 41.07 4.61
543 544 3.499737 GCGCTGATCGTTGTGGGG 61.500 66.667 0.00 0.00 41.07 4.96
544 545 3.499737 CGCTGATCGTTGTGGGGC 61.500 66.667 0.00 0.00 0.00 5.80
545 546 2.045926 GCTGATCGTTGTGGGGCT 60.046 61.111 0.00 0.00 0.00 5.19
546 547 2.109126 GCTGATCGTTGTGGGGCTC 61.109 63.158 0.00 0.00 0.00 4.70
547 548 1.450312 CTGATCGTTGTGGGGCTCC 60.450 63.158 0.00 0.00 0.00 4.70
548 549 1.903877 CTGATCGTTGTGGGGCTCCT 61.904 60.000 3.07 0.00 0.00 3.69
549 550 1.450312 GATCGTTGTGGGGCTCCTG 60.450 63.158 3.07 0.00 0.00 3.86
550 551 1.899437 GATCGTTGTGGGGCTCCTGA 61.899 60.000 3.07 0.00 0.00 3.86
551 552 1.488705 ATCGTTGTGGGGCTCCTGAA 61.489 55.000 3.07 0.00 0.00 3.02
552 553 1.672356 CGTTGTGGGGCTCCTGAAG 60.672 63.158 3.07 0.00 0.00 3.02
553 554 1.303643 GTTGTGGGGCTCCTGAAGG 60.304 63.158 3.07 0.00 0.00 3.46
554 555 1.463214 TTGTGGGGCTCCTGAAGGA 60.463 57.895 3.07 0.00 43.08 3.36
563 564 2.922162 TCCTGAAGGAGGGCTCATC 58.078 57.895 0.00 0.00 43.06 2.92
564 565 0.043183 TCCTGAAGGAGGGCTCATCA 59.957 55.000 0.00 0.00 43.06 3.07
565 566 0.914644 CCTGAAGGAGGGCTCATCAA 59.085 55.000 0.00 0.00 38.36 2.57
566 567 1.407989 CCTGAAGGAGGGCTCATCAAC 60.408 57.143 0.00 0.00 38.36 3.18
567 568 1.558756 CTGAAGGAGGGCTCATCAACT 59.441 52.381 0.00 0.00 30.30 3.16
568 569 2.768527 CTGAAGGAGGGCTCATCAACTA 59.231 50.000 0.00 0.00 30.30 2.24
569 570 2.768527 TGAAGGAGGGCTCATCAACTAG 59.231 50.000 0.00 0.00 0.00 2.57
570 571 2.559381 AGGAGGGCTCATCAACTAGT 57.441 50.000 0.00 0.00 0.00 2.57
571 572 2.839228 AGGAGGGCTCATCAACTAGTT 58.161 47.619 1.12 1.12 0.00 2.24
572 573 2.503356 AGGAGGGCTCATCAACTAGTTG 59.497 50.000 26.60 26.60 41.71 3.16
573 574 2.284190 GAGGGCTCATCAACTAGTTGC 58.716 52.381 27.49 16.80 40.24 4.17
574 575 1.912043 AGGGCTCATCAACTAGTTGCT 59.088 47.619 27.49 17.61 40.24 3.91
575 576 2.093235 AGGGCTCATCAACTAGTTGCTC 60.093 50.000 27.49 17.03 40.24 4.26
576 577 2.093235 GGGCTCATCAACTAGTTGCTCT 60.093 50.000 27.49 13.56 40.24 4.09
577 578 3.194062 GGCTCATCAACTAGTTGCTCTC 58.806 50.000 27.49 15.49 40.24 3.20
578 579 2.857152 GCTCATCAACTAGTTGCTCTCG 59.143 50.000 27.49 15.94 40.24 4.04
579 580 3.443037 CTCATCAACTAGTTGCTCTCGG 58.557 50.000 27.49 13.83 40.24 4.63
580 581 3.089284 TCATCAACTAGTTGCTCTCGGA 58.911 45.455 27.49 15.55 40.24 4.55
581 582 3.129462 TCATCAACTAGTTGCTCTCGGAG 59.871 47.826 27.49 8.06 40.24 4.63
582 583 2.791655 TCAACTAGTTGCTCTCGGAGA 58.208 47.619 27.49 7.60 40.24 3.71
583 584 2.488545 TCAACTAGTTGCTCTCGGAGAC 59.511 50.000 27.49 2.39 40.24 3.36
584 585 2.490115 CAACTAGTTGCTCTCGGAGACT 59.510 50.000 22.03 3.03 33.45 3.24
585 586 3.630892 ACTAGTTGCTCTCGGAGACTA 57.369 47.619 2.97 4.07 0.00 2.59
586 587 4.159244 ACTAGTTGCTCTCGGAGACTAT 57.841 45.455 2.97 0.00 0.00 2.12
587 588 4.528920 ACTAGTTGCTCTCGGAGACTATT 58.471 43.478 2.97 0.00 0.00 1.73
588 589 5.682659 ACTAGTTGCTCTCGGAGACTATTA 58.317 41.667 2.97 0.32 0.00 0.98
589 590 6.300703 ACTAGTTGCTCTCGGAGACTATTAT 58.699 40.000 2.97 0.00 0.00 1.28
590 591 6.773685 ACTAGTTGCTCTCGGAGACTATTATT 59.226 38.462 2.97 0.00 0.00 1.40
591 592 7.937942 ACTAGTTGCTCTCGGAGACTATTATTA 59.062 37.037 2.97 0.00 0.00 0.98
592 593 7.584122 AGTTGCTCTCGGAGACTATTATTAA 57.416 36.000 2.97 0.00 0.00 1.40
593 594 8.008513 AGTTGCTCTCGGAGACTATTATTAAA 57.991 34.615 2.97 0.00 0.00 1.52
594 595 7.921745 AGTTGCTCTCGGAGACTATTATTAAAC 59.078 37.037 2.97 0.87 0.00 2.01
595 596 7.584122 TGCTCTCGGAGACTATTATTAAACT 57.416 36.000 2.97 0.00 0.00 2.66
596 597 7.649973 TGCTCTCGGAGACTATTATTAAACTC 58.350 38.462 2.97 0.00 0.00 3.01
597 598 6.797995 GCTCTCGGAGACTATTATTAAACTCG 59.202 42.308 2.97 0.00 0.00 4.18
598 599 7.520292 GCTCTCGGAGACTATTATTAAACTCGT 60.520 40.741 2.97 0.00 0.00 4.18
599 600 8.218338 TCTCGGAGACTATTATTAAACTCGTT 57.782 34.615 2.97 0.00 0.00 3.85
600 601 9.330063 TCTCGGAGACTATTATTAAACTCGTTA 57.670 33.333 2.97 0.00 0.00 3.18
601 602 9.941664 CTCGGAGACTATTATTAAACTCGTTAA 57.058 33.333 0.00 0.00 36.14 2.01
602 603 9.722056 TCGGAGACTATTATTAAACTCGTTAAC 57.278 33.333 0.00 0.00 34.50 2.01
603 604 9.507280 CGGAGACTATTATTAAACTCGTTAACA 57.493 33.333 6.39 0.00 34.50 2.41
664 665 9.643693 CCATGTGAAATAAAAATATATCCCTGC 57.356 33.333 0.00 0.00 0.00 4.85
678 679 9.914834 AATATATCCCTGCAAAGTAAAAGTACA 57.085 29.630 0.00 0.00 32.12 2.90
679 680 9.914834 ATATATCCCTGCAAAGTAAAAGTACAA 57.085 29.630 0.00 0.00 32.12 2.41
680 681 5.761165 TCCCTGCAAAGTAAAAGTACAAC 57.239 39.130 0.00 0.00 32.12 3.32
681 682 5.442391 TCCCTGCAAAGTAAAAGTACAACT 58.558 37.500 0.00 0.00 32.12 3.16
682 683 5.889289 TCCCTGCAAAGTAAAAGTACAACTT 59.111 36.000 0.00 0.00 40.80 2.66
694 695 6.870971 AAAGTACAACTTTTGCTAATCGGA 57.129 33.333 0.00 0.00 45.38 4.55
695 696 5.857822 AGTACAACTTTTGCTAATCGGAC 57.142 39.130 0.00 0.00 0.00 4.79
696 697 5.302360 AGTACAACTTTTGCTAATCGGACA 58.698 37.500 0.00 0.00 0.00 4.02
697 698 5.938125 AGTACAACTTTTGCTAATCGGACAT 59.062 36.000 0.00 0.00 0.00 3.06
698 699 7.101054 AGTACAACTTTTGCTAATCGGACATA 58.899 34.615 0.00 0.00 0.00 2.29
699 700 6.178239 ACAACTTTTGCTAATCGGACATAC 57.822 37.500 0.00 0.00 0.00 2.39
700 701 5.938125 ACAACTTTTGCTAATCGGACATACT 59.062 36.000 0.00 0.00 0.00 2.12
701 702 6.092259 ACAACTTTTGCTAATCGGACATACTC 59.908 38.462 0.00 0.00 0.00 2.59
702 703 5.730550 ACTTTTGCTAATCGGACATACTCA 58.269 37.500 0.00 0.00 0.00 3.41
703 704 6.349300 ACTTTTGCTAATCGGACATACTCAT 58.651 36.000 0.00 0.00 0.00 2.90
704 705 6.258727 ACTTTTGCTAATCGGACATACTCATG 59.741 38.462 0.00 0.00 38.21 3.07
706 707 6.399639 TTGCTAATCGGACATACTCATGTA 57.600 37.500 0.00 0.00 45.58 2.29
707 708 5.769367 TGCTAATCGGACATACTCATGTAC 58.231 41.667 0.00 0.00 45.58 2.90
708 709 5.535030 TGCTAATCGGACATACTCATGTACT 59.465 40.000 0.00 0.00 45.58 2.73
709 710 5.859114 GCTAATCGGACATACTCATGTACTG 59.141 44.000 0.00 0.00 45.58 2.74
710 711 6.294010 GCTAATCGGACATACTCATGTACTGA 60.294 42.308 0.00 0.00 45.58 3.41
711 712 6.465439 AATCGGACATACTCATGTACTGAA 57.535 37.500 0.00 0.00 45.58 3.02
712 713 5.907866 TCGGACATACTCATGTACTGAAA 57.092 39.130 0.00 0.00 45.58 2.69
713 714 6.465439 TCGGACATACTCATGTACTGAAAT 57.535 37.500 0.00 0.00 45.58 2.17
714 715 6.504398 TCGGACATACTCATGTACTGAAATC 58.496 40.000 0.00 0.00 45.58 2.17
715 716 6.321435 TCGGACATACTCATGTACTGAAATCT 59.679 38.462 0.00 0.00 45.58 2.40
716 717 7.501225 TCGGACATACTCATGTACTGAAATCTA 59.499 37.037 0.00 0.00 45.58 1.98
717 718 8.300286 CGGACATACTCATGTACTGAAATCTAT 58.700 37.037 0.00 0.00 45.58 1.98
718 719 9.632807 GGACATACTCATGTACTGAAATCTATC 57.367 37.037 0.00 0.00 45.58 2.08
758 759 6.616947 CAAATTACTTGGTATTTTCGAGGCA 58.383 36.000 0.00 0.00 0.00 4.75
759 760 5.813080 ATTACTTGGTATTTTCGAGGCAC 57.187 39.130 0.00 0.00 0.00 5.01
760 761 2.433436 ACTTGGTATTTTCGAGGCACC 58.567 47.619 0.00 0.00 0.00 5.01
761 762 2.224670 ACTTGGTATTTTCGAGGCACCA 60.225 45.455 6.25 6.25 37.50 4.17
762 763 1.816074 TGGTATTTTCGAGGCACCAC 58.184 50.000 6.25 0.00 34.40 4.16
763 764 0.725117 GGTATTTTCGAGGCACCACG 59.275 55.000 0.00 0.00 0.00 4.94
764 765 1.435577 GTATTTTCGAGGCACCACGT 58.564 50.000 6.41 0.00 0.00 4.49
765 766 1.802365 GTATTTTCGAGGCACCACGTT 59.198 47.619 6.41 0.00 0.00 3.99
766 767 2.172851 ATTTTCGAGGCACCACGTTA 57.827 45.000 6.41 0.00 0.00 3.18
767 768 1.504359 TTTTCGAGGCACCACGTTAG 58.496 50.000 6.41 0.00 0.00 2.34
768 769 0.947180 TTTCGAGGCACCACGTTAGC 60.947 55.000 6.41 0.00 0.00 3.09
774 775 2.435938 CACCACGTTAGCCCGCAT 60.436 61.111 0.00 0.00 0.00 4.73
775 776 2.038269 CACCACGTTAGCCCGCATT 61.038 57.895 0.00 0.00 0.00 3.56
776 777 0.741574 CACCACGTTAGCCCGCATTA 60.742 55.000 0.00 0.00 0.00 1.90
777 778 0.179468 ACCACGTTAGCCCGCATTAT 59.821 50.000 0.00 0.00 0.00 1.28
778 779 0.865769 CCACGTTAGCCCGCATTATC 59.134 55.000 0.00 0.00 0.00 1.75
779 780 0.506932 CACGTTAGCCCGCATTATCG 59.493 55.000 0.00 0.00 0.00 2.92
780 781 1.219522 ACGTTAGCCCGCATTATCGC 61.220 55.000 0.00 0.00 0.00 4.58
781 782 0.944311 CGTTAGCCCGCATTATCGCT 60.944 55.000 0.00 0.00 35.34 4.93
782 783 1.667756 CGTTAGCCCGCATTATCGCTA 60.668 52.381 0.00 0.00 32.76 4.26
783 784 1.993370 GTTAGCCCGCATTATCGCTAG 59.007 52.381 0.00 0.00 35.39 3.42
784 785 0.530744 TAGCCCGCATTATCGCTAGG 59.469 55.000 0.00 0.00 32.76 3.02
785 786 1.185618 AGCCCGCATTATCGCTAGGA 61.186 55.000 0.00 0.00 0.00 2.94
786 787 0.108138 GCCCGCATTATCGCTAGGAT 60.108 55.000 0.00 0.00 39.25 3.24
787 788 1.136305 GCCCGCATTATCGCTAGGATA 59.864 52.381 0.00 0.00 36.55 2.59
788 789 2.224066 GCCCGCATTATCGCTAGGATAT 60.224 50.000 0.00 0.00 37.46 1.63
789 790 3.005472 GCCCGCATTATCGCTAGGATATA 59.995 47.826 0.00 0.00 37.46 0.86
790 791 4.799678 CCCGCATTATCGCTAGGATATAG 58.200 47.826 0.00 0.00 37.46 1.31
791 792 4.230657 CCGCATTATCGCTAGGATATAGC 58.769 47.826 0.00 0.00 37.46 2.97
792 793 4.261614 CCGCATTATCGCTAGGATATAGCA 60.262 45.833 7.58 0.00 40.39 3.49
793 794 4.914504 CGCATTATCGCTAGGATATAGCAG 59.085 45.833 7.58 1.22 40.39 4.24
794 795 5.506483 CGCATTATCGCTAGGATATAGCAGT 60.506 44.000 7.58 0.00 40.39 4.40
795 796 6.293462 CGCATTATCGCTAGGATATAGCAGTA 60.293 42.308 7.58 0.00 40.39 2.74
796 797 7.081349 GCATTATCGCTAGGATATAGCAGTAG 58.919 42.308 7.58 0.00 40.39 2.57
887 888 3.141488 AAAAACCACCGCACCGCA 61.141 55.556 0.00 0.00 0.00 5.69
906 1125 2.060567 ATCCCCTCACGCATCCCATG 62.061 60.000 0.00 0.00 0.00 3.66
983 1202 1.002624 CAAGGGAAGGGCAACGCTA 60.003 57.895 0.00 0.00 37.60 4.26
987 1206 1.025113 GGGAAGGGCAACGCTAGAAC 61.025 60.000 0.00 0.00 37.60 3.01
1330 1549 4.680237 CCCAACTCGGACTGCGCA 62.680 66.667 10.98 10.98 36.56 6.09
1446 1669 6.708054 CCAAATACTCTCTCTCTCTCTCTCTC 59.292 46.154 0.00 0.00 0.00 3.20
1450 1673 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
1600 1927 1.620739 ATGATCCACTGCCGCTCTGT 61.621 55.000 0.00 0.00 0.00 3.41
1608 1935 3.365265 GCCGCTCTGTTGTTGGGG 61.365 66.667 0.00 0.00 36.95 4.96
1617 1944 2.298729 TCTGTTGTTGGGGCTAATTTGC 59.701 45.455 3.03 3.03 0.00 3.68
1724 2051 2.877097 TGGAGCATTGCCACTTTCTA 57.123 45.000 4.70 0.00 0.00 2.10
1820 2148 8.453238 TGTAAGTTACAGTTTAATTTCCTGCA 57.547 30.769 11.75 0.00 34.06 4.41
1892 2220 2.554032 GTGCTTACAGCCTCACATTGTT 59.446 45.455 0.00 0.00 41.51 2.83
1893 2221 3.004734 GTGCTTACAGCCTCACATTGTTT 59.995 43.478 0.00 0.00 41.51 2.83
1919 2247 0.107165 GGTAGTGGAGGATGCCCAAC 60.107 60.000 0.00 0.00 35.12 3.77
2063 2400 5.830912 AGTTGCATGATTTTCTTGTCGAAA 58.169 33.333 0.00 0.00 39.76 3.46
2213 2550 3.357079 GGTGACGGCAGTTGCAGG 61.357 66.667 0.00 1.56 44.36 4.85
2285 2622 1.859302 TCTTTGCAACCCCAACAAGT 58.141 45.000 0.00 0.00 0.00 3.16
2299 2636 2.486472 ACAAGTCCCTCATCTGCTTG 57.514 50.000 0.00 0.00 41.40 4.01
2305 2642 2.703007 GTCCCTCATCTGCTTGGTCTAT 59.297 50.000 0.00 0.00 0.00 1.98
2472 2820 3.897239 TGGGAATTTGACAAGTCACTGT 58.103 40.909 1.73 0.00 39.66 3.55
2503 2851 9.334693 GATTTCTTAACTTTTGTACAGATGCTG 57.665 33.333 0.00 0.00 37.52 4.41
2632 2989 5.917447 GCACTTCTTTTTGAGGAATCTTCAC 59.083 40.000 0.00 0.00 0.00 3.18
2847 3204 3.753272 CACCCTTCAGTATGGTCAGTTTG 59.247 47.826 0.00 0.00 36.16 2.93
2879 3236 7.369803 ACTACAATTTCTGTATGCAAGAGTG 57.630 36.000 0.00 0.00 39.82 3.51
2880 3237 7.161404 ACTACAATTTCTGTATGCAAGAGTGA 58.839 34.615 0.00 0.00 39.82 3.41
2881 3238 6.246420 ACAATTTCTGTATGCAAGAGTGAC 57.754 37.500 0.00 0.00 36.10 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.444119 GGCGAGAGTTTTGTGGCACA 61.444 55.000 17.96 17.96 0.00 4.57
3 4 1.282875 GGCGAGAGTTTTGTGGCAC 59.717 57.895 11.55 11.55 0.00 5.01
4 5 0.749818 TTGGCGAGAGTTTTGTGGCA 60.750 50.000 0.00 0.00 0.00 4.92
5 6 0.317854 GTTGGCGAGAGTTTTGTGGC 60.318 55.000 0.00 0.00 0.00 5.01
6 7 0.041312 CGTTGGCGAGAGTTTTGTGG 60.041 55.000 0.00 0.00 41.33 4.17
7 8 0.041312 CCGTTGGCGAGAGTTTTGTG 60.041 55.000 0.00 0.00 41.33 3.33
8 9 1.164041 CCCGTTGGCGAGAGTTTTGT 61.164 55.000 0.00 0.00 41.33 2.83
9 10 1.574428 CCCGTTGGCGAGAGTTTTG 59.426 57.895 0.00 0.00 41.33 2.44
10 11 4.058797 CCCGTTGGCGAGAGTTTT 57.941 55.556 0.00 0.00 41.33 2.43
20 21 1.028905 TTTCTTTGACTGCCCGTTGG 58.971 50.000 0.00 0.00 0.00 3.77
21 22 2.034558 ACATTTCTTTGACTGCCCGTTG 59.965 45.455 0.00 0.00 0.00 4.10
22 23 2.293399 GACATTTCTTTGACTGCCCGTT 59.707 45.455 0.00 0.00 0.00 4.44
23 24 1.880027 GACATTTCTTTGACTGCCCGT 59.120 47.619 0.00 0.00 0.00 5.28
24 25 1.879380 TGACATTTCTTTGACTGCCCG 59.121 47.619 0.00 0.00 0.00 6.13
25 26 3.642705 GTTGACATTTCTTTGACTGCCC 58.357 45.455 0.00 0.00 0.00 5.36
26 27 3.243068 ACGTTGACATTTCTTTGACTGCC 60.243 43.478 0.00 0.00 0.00 4.85
27 28 3.952535 ACGTTGACATTTCTTTGACTGC 58.047 40.909 0.00 0.00 0.00 4.40
28 29 7.164171 CAGTAAACGTTGACATTTCTTTGACTG 59.836 37.037 18.08 0.00 0.00 3.51
29 30 7.148306 ACAGTAAACGTTGACATTTCTTTGACT 60.148 33.333 18.08 0.00 0.00 3.41
30 31 6.964934 ACAGTAAACGTTGACATTTCTTTGAC 59.035 34.615 18.08 0.00 0.00 3.18
31 32 7.079182 ACAGTAAACGTTGACATTTCTTTGA 57.921 32.000 18.08 0.00 0.00 2.69
32 33 7.111593 GCTACAGTAAACGTTGACATTTCTTTG 59.888 37.037 18.08 7.82 0.00 2.77
33 34 7.130269 GCTACAGTAAACGTTGACATTTCTTT 58.870 34.615 18.08 0.00 0.00 2.52
34 35 6.563381 CGCTACAGTAAACGTTGACATTTCTT 60.563 38.462 18.08 0.00 0.00 2.52
35 36 5.107607 CGCTACAGTAAACGTTGACATTTCT 60.108 40.000 18.08 0.00 0.00 2.52
36 37 5.070862 CGCTACAGTAAACGTTGACATTTC 58.929 41.667 18.08 2.43 0.00 2.17
37 38 4.609783 GCGCTACAGTAAACGTTGACATTT 60.610 41.667 18.08 4.05 0.00 2.32
38 39 3.120786 GCGCTACAGTAAACGTTGACATT 60.121 43.478 18.08 6.49 0.00 2.71
39 40 2.410730 GCGCTACAGTAAACGTTGACAT 59.589 45.455 18.08 8.04 0.00 3.06
40 41 1.788308 GCGCTACAGTAAACGTTGACA 59.212 47.619 18.08 0.00 0.00 3.58
41 42 2.056577 AGCGCTACAGTAAACGTTGAC 58.943 47.619 8.99 7.79 0.00 3.18
42 43 2.427232 AGCGCTACAGTAAACGTTGA 57.573 45.000 8.99 0.00 0.00 3.18
43 44 3.060138 TCAAAGCGCTACAGTAAACGTTG 60.060 43.478 12.05 7.64 0.00 4.10
44 45 3.125316 TCAAAGCGCTACAGTAAACGTT 58.875 40.909 12.05 0.00 0.00 3.99
45 46 2.746269 TCAAAGCGCTACAGTAAACGT 58.254 42.857 12.05 0.00 0.00 3.99
46 47 3.991605 ATCAAAGCGCTACAGTAAACG 57.008 42.857 12.05 0.00 0.00 3.60
47 48 8.175716 AGATTAAATCAAAGCGCTACAGTAAAC 58.824 33.333 12.05 4.20 0.00 2.01
48 49 8.263940 AGATTAAATCAAAGCGCTACAGTAAA 57.736 30.769 12.05 0.36 0.00 2.01
49 50 7.843490 AGATTAAATCAAAGCGCTACAGTAA 57.157 32.000 12.05 5.50 0.00 2.24
50 51 7.843490 AAGATTAAATCAAAGCGCTACAGTA 57.157 32.000 12.05 0.00 0.00 2.74
51 52 6.743575 AAGATTAAATCAAAGCGCTACAGT 57.256 33.333 12.05 0.00 0.00 3.55
52 53 8.368126 CAAAAAGATTAAATCAAAGCGCTACAG 58.632 33.333 12.05 3.42 0.00 2.74
53 54 8.079203 TCAAAAAGATTAAATCAAAGCGCTACA 58.921 29.630 12.05 0.00 0.00 2.74
54 55 8.447787 TCAAAAAGATTAAATCAAAGCGCTAC 57.552 30.769 12.05 0.00 0.00 3.58
55 56 9.469807 TTTCAAAAAGATTAAATCAAAGCGCTA 57.530 25.926 12.05 0.00 0.00 4.26
56 57 7.945033 TTCAAAAAGATTAAATCAAAGCGCT 57.055 28.000 2.64 2.64 0.00 5.92
57 58 9.254421 GATTTCAAAAAGATTAAATCAAAGCGC 57.746 29.630 0.00 0.00 37.94 5.92
77 78 9.610705 TCATGAACTTTTTCCAAAATGATTTCA 57.389 25.926 0.00 5.79 30.34 2.69
137 138 8.647226 CGTGAACTTTCTTTTTCAAAATGAACT 58.353 29.630 10.02 0.40 35.89 3.01
138 139 8.643752 TCGTGAACTTTCTTTTTCAAAATGAAC 58.356 29.630 10.02 1.73 35.89 3.18
139 140 8.749841 TCGTGAACTTTCTTTTTCAAAATGAA 57.250 26.923 7.02 7.02 33.58 2.57
140 141 8.925161 ATCGTGAACTTTCTTTTTCAAAATGA 57.075 26.923 0.00 0.00 33.58 2.57
141 142 9.971744 AAATCGTGAACTTTCTTTTTCAAAATG 57.028 25.926 0.00 0.00 33.58 2.32
143 144 9.804547 CAAAATCGTGAACTTTCTTTTTCAAAA 57.195 25.926 0.00 0.00 33.58 2.44
144 145 9.197694 TCAAAATCGTGAACTTTCTTTTTCAAA 57.802 25.926 0.00 0.00 33.58 2.69
145 146 8.749841 TCAAAATCGTGAACTTTCTTTTTCAA 57.250 26.923 0.00 0.00 33.58 2.69
146 147 8.240682 TCTCAAAATCGTGAACTTTCTTTTTCA 58.759 29.630 0.00 0.00 0.00 2.69
147 148 8.614994 TCTCAAAATCGTGAACTTTCTTTTTC 57.385 30.769 0.00 0.00 0.00 2.29
148 149 8.980143 TTCTCAAAATCGTGAACTTTCTTTTT 57.020 26.923 0.00 0.00 0.00 1.94
149 150 8.980143 TTTCTCAAAATCGTGAACTTTCTTTT 57.020 26.923 0.00 0.00 0.00 2.27
150 151 8.980143 TTTTCTCAAAATCGTGAACTTTCTTT 57.020 26.923 0.00 0.00 0.00 2.52
151 152 8.980143 TTTTTCTCAAAATCGTGAACTTTCTT 57.020 26.923 0.00 0.00 0.00 2.52
152 153 9.237846 GATTTTTCTCAAAATCGTGAACTTTCT 57.762 29.630 5.00 0.00 45.23 2.52
174 175 9.981114 ACCTTTTTCAAAATTGATAGACGATTT 57.019 25.926 0.00 0.00 42.43 2.17
175 176 9.981114 AACCTTTTTCAAAATTGATAGACGATT 57.019 25.926 0.00 0.00 37.00 3.34
176 177 9.626045 GAACCTTTTTCAAAATTGATAGACGAT 57.374 29.630 0.00 0.00 37.00 3.73
177 178 8.625651 TGAACCTTTTTCAAAATTGATAGACGA 58.374 29.630 0.00 0.00 37.00 4.20
178 179 8.795786 TGAACCTTTTTCAAAATTGATAGACG 57.204 30.769 0.00 0.00 37.00 4.18
180 181 9.927668 GGATGAACCTTTTTCAAAATTGATAGA 57.072 29.630 0.00 0.00 34.75 1.98
181 182 9.709495 TGGATGAACCTTTTTCAAAATTGATAG 57.291 29.630 0.00 0.00 36.97 2.08
183 184 9.577222 AATGGATGAACCTTTTTCAAAATTGAT 57.423 25.926 0.00 0.00 36.97 2.57
184 185 8.977267 AATGGATGAACCTTTTTCAAAATTGA 57.023 26.923 0.00 0.00 39.86 2.57
185 186 9.453325 CAAATGGATGAACCTTTTTCAAAATTG 57.547 29.630 0.00 0.00 41.86 2.32
186 187 8.631797 CCAAATGGATGAACCTTTTTCAAAATT 58.368 29.630 0.00 0.00 41.86 1.82
187 188 7.997803 TCCAAATGGATGAACCTTTTTCAAAAT 59.002 29.630 0.00 0.00 41.86 1.82
188 189 7.341805 TCCAAATGGATGAACCTTTTTCAAAA 58.658 30.769 0.00 0.00 41.86 2.44
189 190 6.893583 TCCAAATGGATGAACCTTTTTCAAA 58.106 32.000 0.00 0.00 41.86 2.69
190 191 6.491714 TCCAAATGGATGAACCTTTTTCAA 57.508 33.333 0.00 0.00 41.86 2.69
191 192 6.491714 TTCCAAATGGATGAACCTTTTTCA 57.508 33.333 2.38 0.00 44.98 2.69
192 193 7.800155 TTTTCCAAATGGATGAACCTTTTTC 57.200 32.000 2.38 0.00 44.98 2.29
193 194 9.506018 CTATTTTCCAAATGGATGAACCTTTTT 57.494 29.630 2.38 0.00 44.98 1.94
194 195 8.659527 ACTATTTTCCAAATGGATGAACCTTTT 58.340 29.630 2.38 0.00 44.98 2.27
195 196 8.206126 ACTATTTTCCAAATGGATGAACCTTT 57.794 30.769 2.38 0.00 44.98 3.11
196 197 7.797121 ACTATTTTCCAAATGGATGAACCTT 57.203 32.000 2.38 0.00 44.98 3.50
197 198 7.454380 TGAACTATTTTCCAAATGGATGAACCT 59.546 33.333 2.38 0.00 44.98 3.50
198 199 7.545615 GTGAACTATTTTCCAAATGGATGAACC 59.454 37.037 2.38 0.00 44.98 3.62
199 200 8.087750 TGTGAACTATTTTCCAAATGGATGAAC 58.912 33.333 2.38 0.00 44.98 3.18
200 201 8.187913 TGTGAACTATTTTCCAAATGGATGAA 57.812 30.769 2.38 2.44 44.98 2.57
201 202 7.773489 TGTGAACTATTTTCCAAATGGATGA 57.227 32.000 2.38 0.00 44.98 2.92
202 203 8.830201 TTTGTGAACTATTTTCCAAATGGATG 57.170 30.769 2.38 0.00 44.98 3.51
203 204 9.657419 GATTTGTGAACTATTTTCCAAATGGAT 57.343 29.630 2.38 0.00 44.98 3.41
204 205 8.869109 AGATTTGTGAACTATTTTCCAAATGGA 58.131 29.630 13.49 0.00 43.73 3.41
205 206 9.492973 AAGATTTGTGAACTATTTTCCAAATGG 57.507 29.630 13.49 0.00 33.58 3.16
208 209 9.748708 CTCAAGATTTGTGAACTATTTTCCAAA 57.251 29.630 0.00 0.00 0.00 3.28
209 210 9.130661 TCTCAAGATTTGTGAACTATTTTCCAA 57.869 29.630 0.00 0.00 30.97 3.53
210 211 8.690203 TCTCAAGATTTGTGAACTATTTTCCA 57.310 30.769 0.00 0.00 30.97 3.53
211 212 9.965824 TTTCTCAAGATTTGTGAACTATTTTCC 57.034 29.630 5.97 0.00 41.28 3.13
317 318 9.500785 TGAACTTTTTCCAAATCTCAAACTTTT 57.499 25.926 0.00 0.00 0.00 2.27
318 319 9.671279 ATGAACTTTTTCCAAATCTCAAACTTT 57.329 25.926 0.00 0.00 0.00 2.66
319 320 9.671279 AATGAACTTTTTCCAAATCTCAAACTT 57.329 25.926 0.00 0.00 0.00 2.66
320 321 9.101655 CAATGAACTTTTTCCAAATCTCAAACT 57.898 29.630 0.00 0.00 0.00 2.66
321 322 9.097257 TCAATGAACTTTTTCCAAATCTCAAAC 57.903 29.630 0.00 0.00 0.00 2.93
322 323 9.835389 ATCAATGAACTTTTTCCAAATCTCAAA 57.165 25.926 0.00 0.00 0.00 2.69
323 324 9.835389 AATCAATGAACTTTTTCCAAATCTCAA 57.165 25.926 0.00 0.00 0.00 3.02
324 325 9.835389 AAATCAATGAACTTTTTCCAAATCTCA 57.165 25.926 0.00 0.00 0.00 3.27
327 328 9.667989 CCAAAATCAATGAACTTTTTCCAAATC 57.332 29.630 0.00 0.00 0.00 2.17
328 329 9.406113 TCCAAAATCAATGAACTTTTTCCAAAT 57.594 25.926 0.00 0.00 0.00 2.32
329 330 8.798859 TCCAAAATCAATGAACTTTTTCCAAA 57.201 26.923 0.00 0.00 0.00 3.28
330 331 8.798859 TTCCAAAATCAATGAACTTTTTCCAA 57.201 26.923 0.00 0.00 0.00 3.53
331 332 8.798859 TTTCCAAAATCAATGAACTTTTTCCA 57.201 26.923 0.00 0.00 0.00 3.53
362 363 9.743057 TCGATGAACAGTTTTTCATATTTTTGT 57.257 25.926 0.00 0.00 44.59 2.83
369 370 9.958234 TTCAAATTCGATGAACAGTTTTTCATA 57.042 25.926 0.00 0.00 44.59 2.15
370 371 8.870160 TTCAAATTCGATGAACAGTTTTTCAT 57.130 26.923 0.00 0.00 46.73 2.57
371 372 8.694975 TTTCAAATTCGATGAACAGTTTTTCA 57.305 26.923 0.00 0.00 39.79 2.69
372 373 9.965748 TTTTTCAAATTCGATGAACAGTTTTTC 57.034 25.926 0.00 0.00 36.57 2.29
374 375 9.919348 CATTTTTCAAATTCGATGAACAGTTTT 57.081 25.926 0.00 0.00 36.57 2.43
375 376 9.097257 ACATTTTTCAAATTCGATGAACAGTTT 57.903 25.926 0.00 0.00 36.57 2.66
376 377 8.647143 ACATTTTTCAAATTCGATGAACAGTT 57.353 26.923 0.00 0.00 36.57 3.16
377 378 8.647143 AACATTTTTCAAATTCGATGAACAGT 57.353 26.923 0.00 0.00 36.57 3.55
378 379 8.754096 TGAACATTTTTCAAATTCGATGAACAG 58.246 29.630 0.00 0.00 36.57 3.16
379 380 8.640091 TGAACATTTTTCAAATTCGATGAACA 57.360 26.923 0.00 0.00 36.57 3.18
380 381 9.731519 GATGAACATTTTTCAAATTCGATGAAC 57.268 29.630 0.00 0.00 36.57 3.18
381 382 8.637704 CGATGAACATTTTTCAAATTCGATGAA 58.362 29.630 0.00 0.00 33.04 2.57
382 383 8.020244 TCGATGAACATTTTTCAAATTCGATGA 58.980 29.630 5.91 0.00 34.54 2.92
383 384 8.160603 TCGATGAACATTTTTCAAATTCGATG 57.839 30.769 5.91 0.00 34.54 3.84
384 385 8.741101 TTCGATGAACATTTTTCAAATTCGAT 57.259 26.923 9.34 0.00 37.34 3.59
385 386 8.567369 TTTCGATGAACATTTTTCAAATTCGA 57.433 26.923 5.91 5.91 36.38 3.71
386 387 9.796062 AATTTCGATGAACATTTTTCAAATTCG 57.204 25.926 0.00 2.23 32.74 3.34
417 418 8.267183 ACCTTTTCCAGATTTGATGAAGTTTTT 58.733 29.630 0.00 0.00 0.00 1.94
418 419 7.795047 ACCTTTTCCAGATTTGATGAAGTTTT 58.205 30.769 0.00 0.00 0.00 2.43
419 420 7.365497 ACCTTTTCCAGATTTGATGAAGTTT 57.635 32.000 0.00 0.00 0.00 2.66
420 421 6.983906 ACCTTTTCCAGATTTGATGAAGTT 57.016 33.333 0.00 0.00 0.00 2.66
421 422 6.983906 AACCTTTTCCAGATTTGATGAAGT 57.016 33.333 0.00 0.00 0.00 3.01
422 423 9.578439 GATAAACCTTTTCCAGATTTGATGAAG 57.422 33.333 0.00 0.00 0.00 3.02
423 424 8.243426 CGATAAACCTTTTCCAGATTTGATGAA 58.757 33.333 0.00 0.00 0.00 2.57
424 425 7.609918 TCGATAAACCTTTTCCAGATTTGATGA 59.390 33.333 0.00 0.00 0.00 2.92
425 426 7.698130 GTCGATAAACCTTTTCCAGATTTGATG 59.302 37.037 0.00 0.00 0.00 3.07
426 427 7.393234 TGTCGATAAACCTTTTCCAGATTTGAT 59.607 33.333 0.00 0.00 0.00 2.57
427 428 6.712998 TGTCGATAAACCTTTTCCAGATTTGA 59.287 34.615 0.00 0.00 0.00 2.69
428 429 6.801862 GTGTCGATAAACCTTTTCCAGATTTG 59.198 38.462 0.00 0.00 0.00 2.32
429 430 6.348213 CGTGTCGATAAACCTTTTCCAGATTT 60.348 38.462 0.00 0.00 0.00 2.17
430 431 5.121768 CGTGTCGATAAACCTTTTCCAGATT 59.878 40.000 0.00 0.00 0.00 2.40
431 432 4.630069 CGTGTCGATAAACCTTTTCCAGAT 59.370 41.667 0.00 0.00 0.00 2.90
432 433 3.991773 CGTGTCGATAAACCTTTTCCAGA 59.008 43.478 0.00 0.00 0.00 3.86
433 434 3.744426 ACGTGTCGATAAACCTTTTCCAG 59.256 43.478 0.00 0.00 0.00 3.86
434 435 3.495377 CACGTGTCGATAAACCTTTTCCA 59.505 43.478 7.58 0.00 0.00 3.53
435 436 3.495753 ACACGTGTCGATAAACCTTTTCC 59.504 43.478 17.22 0.00 0.00 3.13
436 437 4.451557 CACACGTGTCGATAAACCTTTTC 58.548 43.478 20.49 0.00 0.00 2.29
437 438 3.249080 CCACACGTGTCGATAAACCTTTT 59.751 43.478 20.49 0.00 0.00 2.27
438 439 2.803956 CCACACGTGTCGATAAACCTTT 59.196 45.455 20.49 0.00 0.00 3.11
439 440 2.409975 CCACACGTGTCGATAAACCTT 58.590 47.619 20.49 0.00 0.00 3.50
440 441 1.337447 CCCACACGTGTCGATAAACCT 60.337 52.381 20.49 0.00 0.00 3.50
441 442 1.073177 CCCACACGTGTCGATAAACC 58.927 55.000 20.49 0.00 0.00 3.27
442 443 2.068837 TCCCACACGTGTCGATAAAC 57.931 50.000 20.49 0.00 0.00 2.01
443 444 2.816204 TTCCCACACGTGTCGATAAA 57.184 45.000 20.49 6.33 0.00 1.40
444 445 2.816204 TTTCCCACACGTGTCGATAA 57.184 45.000 20.49 7.56 0.00 1.75
445 446 2.816204 TTTTCCCACACGTGTCGATA 57.184 45.000 20.49 9.60 0.00 2.92
446 447 1.956297 TTTTTCCCACACGTGTCGAT 58.044 45.000 20.49 0.00 0.00 3.59
447 448 3.455328 TTTTTCCCACACGTGTCGA 57.545 47.368 20.49 14.51 0.00 4.20
464 465 0.681243 GGCGCTCCCTCTGGATTTTT 60.681 55.000 7.64 0.00 40.80 1.94
465 466 1.077429 GGCGCTCCCTCTGGATTTT 60.077 57.895 7.64 0.00 40.80 1.82
466 467 2.592308 GGCGCTCCCTCTGGATTT 59.408 61.111 7.64 0.00 40.80 2.17
481 482 1.310933 CCATGTGTCAAGCTCTGGGC 61.311 60.000 0.00 0.00 42.19 5.36
482 483 1.310933 GCCATGTGTCAAGCTCTGGG 61.311 60.000 0.00 0.00 0.00 4.45
483 484 1.642037 CGCCATGTGTCAAGCTCTGG 61.642 60.000 0.00 0.00 0.00 3.86
484 485 1.642037 CCGCCATGTGTCAAGCTCTG 61.642 60.000 0.00 0.00 0.00 3.35
485 486 1.376424 CCGCCATGTGTCAAGCTCT 60.376 57.895 0.00 0.00 0.00 4.09
486 487 2.401766 CCCGCCATGTGTCAAGCTC 61.402 63.158 0.00 0.00 0.00 4.09
487 488 2.360350 CCCGCCATGTGTCAAGCT 60.360 61.111 0.00 0.00 0.00 3.74
488 489 2.359850 TCCCGCCATGTGTCAAGC 60.360 61.111 0.00 0.00 0.00 4.01
489 490 1.746615 CCTCCCGCCATGTGTCAAG 60.747 63.158 0.00 0.00 0.00 3.02
490 491 2.350895 CCTCCCGCCATGTGTCAA 59.649 61.111 0.00 0.00 0.00 3.18
491 492 4.408821 GCCTCCCGCCATGTGTCA 62.409 66.667 0.00 0.00 0.00 3.58
492 493 4.101448 AGCCTCCCGCCATGTGTC 62.101 66.667 0.00 0.00 38.78 3.67
493 494 4.415150 CAGCCTCCCGCCATGTGT 62.415 66.667 0.00 0.00 38.78 3.72
494 495 4.100084 TCAGCCTCCCGCCATGTG 62.100 66.667 0.00 0.00 38.78 3.21
495 496 3.790437 CTCAGCCTCCCGCCATGT 61.790 66.667 0.00 0.00 38.78 3.21
496 497 3.457625 CTCTCAGCCTCCCGCCATG 62.458 68.421 0.00 0.00 38.78 3.66
497 498 3.160047 CTCTCAGCCTCCCGCCAT 61.160 66.667 0.00 0.00 38.78 4.40
508 509 3.485431 CACTTGGCGCGCTCTCAG 61.485 66.667 32.29 21.96 0.00 3.35
519 520 2.034879 AACGATCAGCGCCACTTGG 61.035 57.895 2.29 0.00 46.04 3.61
520 521 1.133253 CAACGATCAGCGCCACTTG 59.867 57.895 2.29 0.00 46.04 3.16
521 522 1.301716 ACAACGATCAGCGCCACTT 60.302 52.632 2.29 0.00 46.04 3.16
522 523 2.029288 CACAACGATCAGCGCCACT 61.029 57.895 2.29 0.00 46.04 4.00
523 524 2.476051 CACAACGATCAGCGCCAC 59.524 61.111 2.29 0.00 46.04 5.01
524 525 2.741985 CCACAACGATCAGCGCCA 60.742 61.111 2.29 0.00 46.04 5.69
525 526 3.499737 CCCACAACGATCAGCGCC 61.500 66.667 2.29 0.00 46.04 6.53
526 527 3.499737 CCCCACAACGATCAGCGC 61.500 66.667 0.00 0.00 46.04 5.92
528 529 2.045926 AGCCCCACAACGATCAGC 60.046 61.111 0.00 0.00 0.00 4.26
529 530 1.450312 GGAGCCCCACAACGATCAG 60.450 63.158 0.00 0.00 0.00 2.90
530 531 1.918293 AGGAGCCCCACAACGATCA 60.918 57.895 0.00 0.00 33.88 2.92
531 532 1.450312 CAGGAGCCCCACAACGATC 60.450 63.158 0.00 0.00 33.88 3.69
532 533 1.488705 TTCAGGAGCCCCACAACGAT 61.489 55.000 0.00 0.00 33.88 3.73
533 534 2.111999 CTTCAGGAGCCCCACAACGA 62.112 60.000 0.00 0.00 33.88 3.85
534 535 1.672356 CTTCAGGAGCCCCACAACG 60.672 63.158 0.00 0.00 33.88 4.10
535 536 1.303643 CCTTCAGGAGCCCCACAAC 60.304 63.158 0.00 0.00 37.39 3.32
536 537 1.463214 TCCTTCAGGAGCCCCACAA 60.463 57.895 0.00 0.00 39.78 3.33
537 538 2.206900 TCCTTCAGGAGCCCCACA 59.793 61.111 0.00 0.00 39.78 4.17
546 547 0.914644 TTGATGAGCCCTCCTTCAGG 59.085 55.000 0.00 0.00 43.01 3.86
547 548 1.558756 AGTTGATGAGCCCTCCTTCAG 59.441 52.381 0.00 0.00 0.00 3.02
548 549 1.661463 AGTTGATGAGCCCTCCTTCA 58.339 50.000 0.00 0.00 0.00 3.02
549 550 2.769095 ACTAGTTGATGAGCCCTCCTTC 59.231 50.000 0.00 0.00 0.00 3.46
550 551 2.839228 ACTAGTTGATGAGCCCTCCTT 58.161 47.619 0.00 0.00 0.00 3.36
551 552 2.503356 CAACTAGTTGATGAGCCCTCCT 59.497 50.000 28.17 0.00 42.93 3.69
552 553 2.911484 CAACTAGTTGATGAGCCCTCC 58.089 52.381 28.17 0.00 42.93 4.30
553 554 2.093235 AGCAACTAGTTGATGAGCCCTC 60.093 50.000 34.43 15.86 42.93 4.30
554 555 1.912043 AGCAACTAGTTGATGAGCCCT 59.088 47.619 34.43 18.94 42.93 5.19
555 556 2.093235 AGAGCAACTAGTTGATGAGCCC 60.093 50.000 34.43 18.31 42.93 5.19
556 557 3.194062 GAGAGCAACTAGTTGATGAGCC 58.806 50.000 34.43 18.66 42.93 4.70
557 558 2.857152 CGAGAGCAACTAGTTGATGAGC 59.143 50.000 34.43 20.67 42.93 4.26
558 559 3.129462 TCCGAGAGCAACTAGTTGATGAG 59.871 47.826 34.43 21.47 42.93 2.90
559 560 3.089284 TCCGAGAGCAACTAGTTGATGA 58.911 45.455 34.43 20.60 42.93 2.92
560 561 3.129462 TCTCCGAGAGCAACTAGTTGATG 59.871 47.826 34.43 18.79 42.93 3.07
561 562 3.129638 GTCTCCGAGAGCAACTAGTTGAT 59.870 47.826 34.43 30.30 42.93 2.57
562 563 2.488545 GTCTCCGAGAGCAACTAGTTGA 59.511 50.000 34.43 14.03 42.93 3.18
563 564 2.490115 AGTCTCCGAGAGCAACTAGTTG 59.510 50.000 27.85 27.85 43.14 3.16
564 565 2.797786 AGTCTCCGAGAGCAACTAGTT 58.202 47.619 1.12 1.12 0.00 2.24
565 566 2.500392 AGTCTCCGAGAGCAACTAGT 57.500 50.000 0.00 0.00 0.00 2.57
566 567 6.811253 ATAATAGTCTCCGAGAGCAACTAG 57.189 41.667 0.00 0.00 27.76 2.57
567 568 8.687292 TTAATAATAGTCTCCGAGAGCAACTA 57.313 34.615 0.00 0.00 0.00 2.24
568 569 7.584122 TTAATAATAGTCTCCGAGAGCAACT 57.416 36.000 0.00 0.00 0.00 3.16
569 570 7.921745 AGTTTAATAATAGTCTCCGAGAGCAAC 59.078 37.037 0.00 0.00 0.00 4.17
570 571 8.008513 AGTTTAATAATAGTCTCCGAGAGCAA 57.991 34.615 0.00 0.00 0.00 3.91
571 572 7.520131 CGAGTTTAATAATAGTCTCCGAGAGCA 60.520 40.741 0.00 0.00 0.00 4.26
572 573 6.797995 CGAGTTTAATAATAGTCTCCGAGAGC 59.202 42.308 0.00 0.00 0.00 4.09
573 574 7.863666 ACGAGTTTAATAATAGTCTCCGAGAG 58.136 38.462 0.00 0.00 0.00 3.20
574 575 7.798596 ACGAGTTTAATAATAGTCTCCGAGA 57.201 36.000 0.00 0.00 0.00 4.04
575 576 9.941664 TTAACGAGTTTAATAATAGTCTCCGAG 57.058 33.333 0.00 0.00 0.00 4.63
576 577 9.722056 GTTAACGAGTTTAATAATAGTCTCCGA 57.278 33.333 0.00 0.00 32.17 4.55
577 578 9.507280 TGTTAACGAGTTTAATAATAGTCTCCG 57.493 33.333 0.26 0.00 32.17 4.63
638 639 9.643693 GCAGGGATATATTTTTATTTCACATGG 57.356 33.333 0.00 0.00 0.00 3.66
652 653 9.914834 TGTACTTTTACTTTGCAGGGATATATT 57.085 29.630 0.00 0.00 0.00 1.28
653 654 9.914834 TTGTACTTTTACTTTGCAGGGATATAT 57.085 29.630 0.00 0.00 0.00 0.86
654 655 9.169592 GTTGTACTTTTACTTTGCAGGGATATA 57.830 33.333 0.00 0.00 0.00 0.86
655 656 7.888546 AGTTGTACTTTTACTTTGCAGGGATAT 59.111 33.333 0.00 0.00 0.00 1.63
656 657 7.228590 AGTTGTACTTTTACTTTGCAGGGATA 58.771 34.615 0.00 0.00 0.00 2.59
657 658 6.068670 AGTTGTACTTTTACTTTGCAGGGAT 58.931 36.000 0.00 0.00 0.00 3.85
658 659 5.442391 AGTTGTACTTTTACTTTGCAGGGA 58.558 37.500 0.00 0.00 0.00 4.20
659 660 5.767816 AGTTGTACTTTTACTTTGCAGGG 57.232 39.130 0.00 0.00 0.00 4.45
672 673 5.761234 TGTCCGATTAGCAAAAGTTGTACTT 59.239 36.000 0.00 0.00 40.80 2.24
673 674 5.302360 TGTCCGATTAGCAAAAGTTGTACT 58.698 37.500 0.00 0.00 0.00 2.73
674 675 5.600908 TGTCCGATTAGCAAAAGTTGTAC 57.399 39.130 0.00 0.00 0.00 2.90
675 676 7.101054 AGTATGTCCGATTAGCAAAAGTTGTA 58.899 34.615 0.00 0.00 0.00 2.41
676 677 5.938125 AGTATGTCCGATTAGCAAAAGTTGT 59.062 36.000 0.00 0.00 0.00 3.32
677 678 6.092122 TGAGTATGTCCGATTAGCAAAAGTTG 59.908 38.462 0.00 0.00 0.00 3.16
678 679 6.170506 TGAGTATGTCCGATTAGCAAAAGTT 58.829 36.000 0.00 0.00 0.00 2.66
679 680 5.730550 TGAGTATGTCCGATTAGCAAAAGT 58.269 37.500 0.00 0.00 0.00 2.66
680 681 6.258727 ACATGAGTATGTCCGATTAGCAAAAG 59.741 38.462 0.00 0.00 44.00 2.27
681 682 6.112734 ACATGAGTATGTCCGATTAGCAAAA 58.887 36.000 0.00 0.00 44.00 2.44
682 683 5.670485 ACATGAGTATGTCCGATTAGCAAA 58.330 37.500 0.00 0.00 44.00 3.68
683 684 5.276461 ACATGAGTATGTCCGATTAGCAA 57.724 39.130 0.00 0.00 44.00 3.91
684 685 4.937201 ACATGAGTATGTCCGATTAGCA 57.063 40.909 0.00 0.00 44.00 3.49
685 686 5.859114 CAGTACATGAGTATGTCCGATTAGC 59.141 44.000 0.00 0.00 44.00 3.09
686 687 7.203255 TCAGTACATGAGTATGTCCGATTAG 57.797 40.000 0.00 0.00 44.00 1.73
687 688 7.576861 TTCAGTACATGAGTATGTCCGATTA 57.423 36.000 0.00 0.00 44.00 1.75
688 689 6.465439 TTCAGTACATGAGTATGTCCGATT 57.535 37.500 0.00 0.00 44.00 3.34
689 690 6.465439 TTTCAGTACATGAGTATGTCCGAT 57.535 37.500 0.00 0.00 44.00 4.18
690 691 5.907866 TTTCAGTACATGAGTATGTCCGA 57.092 39.130 0.00 0.00 44.00 4.55
691 692 6.507900 AGATTTCAGTACATGAGTATGTCCG 58.492 40.000 0.00 0.00 44.00 4.79
692 693 9.632807 GATAGATTTCAGTACATGAGTATGTCC 57.367 37.037 0.00 0.00 44.00 4.02
734 735 6.526674 GTGCCTCGAAAATACCAAGTAATTTG 59.473 38.462 0.00 0.00 36.50 2.32
735 736 6.349860 GGTGCCTCGAAAATACCAAGTAATTT 60.350 38.462 0.00 0.00 0.00 1.82
736 737 5.124936 GGTGCCTCGAAAATACCAAGTAATT 59.875 40.000 0.00 0.00 0.00 1.40
737 738 4.638865 GGTGCCTCGAAAATACCAAGTAAT 59.361 41.667 0.00 0.00 0.00 1.89
738 739 4.004982 GGTGCCTCGAAAATACCAAGTAA 58.995 43.478 0.00 0.00 0.00 2.24
739 740 3.008157 TGGTGCCTCGAAAATACCAAGTA 59.992 43.478 7.72 0.00 38.39 2.24
740 741 2.224670 TGGTGCCTCGAAAATACCAAGT 60.225 45.455 7.72 0.00 38.39 3.16
741 742 2.161609 GTGGTGCCTCGAAAATACCAAG 59.838 50.000 10.81 0.00 42.51 3.61
742 743 2.156098 GTGGTGCCTCGAAAATACCAA 58.844 47.619 10.81 0.00 42.51 3.67
743 744 1.816074 GTGGTGCCTCGAAAATACCA 58.184 50.000 6.44 6.44 38.98 3.25
744 745 0.725117 CGTGGTGCCTCGAAAATACC 59.275 55.000 6.84 0.00 35.30 2.73
745 746 1.435577 ACGTGGTGCCTCGAAAATAC 58.564 50.000 17.84 0.00 36.84 1.89
746 747 2.172851 AACGTGGTGCCTCGAAAATA 57.827 45.000 17.84 0.00 36.84 1.40
747 748 2.073816 CTAACGTGGTGCCTCGAAAAT 58.926 47.619 17.84 5.39 36.84 1.82
748 749 1.504359 CTAACGTGGTGCCTCGAAAA 58.496 50.000 17.84 3.76 36.84 2.29
749 750 0.947180 GCTAACGTGGTGCCTCGAAA 60.947 55.000 17.84 5.84 36.84 3.46
750 751 1.373748 GCTAACGTGGTGCCTCGAA 60.374 57.895 17.84 6.14 36.84 3.71
751 752 2.260434 GCTAACGTGGTGCCTCGA 59.740 61.111 17.84 0.00 36.84 4.04
752 753 2.813908 GGCTAACGTGGTGCCTCG 60.814 66.667 16.35 10.62 43.05 4.63
753 754 2.436115 GGGCTAACGTGGTGCCTC 60.436 66.667 20.82 11.08 45.45 4.70
754 755 4.388499 CGGGCTAACGTGGTGCCT 62.388 66.667 20.82 0.00 45.45 4.75
757 758 0.741574 TAATGCGGGCTAACGTGGTG 60.742 55.000 0.00 0.00 35.98 4.17
758 759 0.179468 ATAATGCGGGCTAACGTGGT 59.821 50.000 0.00 0.00 35.98 4.16
759 760 0.865769 GATAATGCGGGCTAACGTGG 59.134 55.000 0.00 0.00 35.98 4.94
760 761 0.506932 CGATAATGCGGGCTAACGTG 59.493 55.000 0.00 0.00 35.98 4.49
761 762 1.219522 GCGATAATGCGGGCTAACGT 61.220 55.000 0.00 0.00 35.98 3.99
762 763 0.944311 AGCGATAATGCGGGCTAACG 60.944 55.000 0.00 0.00 40.67 3.18
763 764 1.993370 CTAGCGATAATGCGGGCTAAC 59.007 52.381 0.00 0.00 37.52 2.34
764 765 1.067142 CCTAGCGATAATGCGGGCTAA 60.067 52.381 0.00 0.00 37.52 3.09
765 766 0.530744 CCTAGCGATAATGCGGGCTA 59.469 55.000 0.00 0.00 40.67 3.93
766 767 1.185618 TCCTAGCGATAATGCGGGCT 61.186 55.000 0.00 0.00 40.67 5.19
767 768 0.108138 ATCCTAGCGATAATGCGGGC 60.108 55.000 0.00 0.00 40.67 6.13
768 769 3.735237 ATATCCTAGCGATAATGCGGG 57.265 47.619 5.40 0.00 37.01 6.13
769 770 4.230657 GCTATATCCTAGCGATAATGCGG 58.769 47.826 5.40 0.00 37.01 5.69
770 771 4.860072 TGCTATATCCTAGCGATAATGCG 58.140 43.478 15.36 0.00 43.13 4.73
771 772 5.837437 ACTGCTATATCCTAGCGATAATGC 58.163 41.667 14.48 14.48 43.13 3.56
772 773 8.384607 TCTACTGCTATATCCTAGCGATAATG 57.615 38.462 5.40 3.74 43.13 1.90
773 774 8.982091 TTCTACTGCTATATCCTAGCGATAAT 57.018 34.615 5.40 0.00 43.13 1.28
774 775 8.982091 ATTCTACTGCTATATCCTAGCGATAA 57.018 34.615 5.40 0.00 43.13 1.75
775 776 8.433599 AGATTCTACTGCTATATCCTAGCGATA 58.566 37.037 0.00 4.14 43.13 2.92
776 777 7.287061 AGATTCTACTGCTATATCCTAGCGAT 58.713 38.462 0.00 0.00 43.13 4.58
777 778 6.654959 AGATTCTACTGCTATATCCTAGCGA 58.345 40.000 0.00 0.00 43.13 4.93
778 779 6.935741 AGATTCTACTGCTATATCCTAGCG 57.064 41.667 0.31 0.00 43.13 4.26
779 780 9.179909 TGTTAGATTCTACTGCTATATCCTAGC 57.820 37.037 0.00 0.00 40.76 3.42
852 853 1.756408 TTTTCCCTCGCGTGGTACCA 61.756 55.000 24.30 11.60 0.00 3.25
887 888 1.771746 ATGGGATGCGTGAGGGGAT 60.772 57.895 0.00 0.00 0.00 3.85
956 1175 2.348998 CTTCCCTTGCAGGTCGCT 59.651 61.111 0.00 0.00 43.06 4.93
983 1202 2.735772 ATGGCGCTGGATCGGTTCT 61.736 57.895 7.64 0.00 0.00 3.01
987 1206 4.240103 TCCATGGCGCTGGATCGG 62.240 66.667 13.98 3.67 40.43 4.18
1330 1549 2.093537 GATGCGGCGAAGAGGAGGAT 62.094 60.000 12.98 0.00 0.00 3.24
1394 1613 1.150536 ACCTCGGTGTGTTGGCATT 59.849 52.632 0.00 0.00 0.00 3.56
1446 1669 8.830915 AGATAGGTAGAGATAGAGAGAGAGAG 57.169 42.308 0.00 0.00 0.00 3.20
1450 1673 9.035890 TGAAGAGATAGGTAGAGATAGAGAGAG 57.964 40.741 0.00 0.00 0.00 3.20
1600 1927 1.000283 CGTGCAAATTAGCCCCAACAA 60.000 47.619 0.00 0.00 0.00 2.83
1608 1935 1.476488 ACCATTCCCGTGCAAATTAGC 59.524 47.619 0.00 0.00 0.00 3.09
1617 1944 2.099592 CCATGAAATCACCATTCCCGTG 59.900 50.000 0.00 0.00 0.00 4.94
1724 2051 6.013466 ACAATGCCAATCAGGATTTTACCTTT 60.013 34.615 0.00 0.00 41.22 3.11
1892 2220 3.388024 GCATCCTCCACTACCTGACATAA 59.612 47.826 0.00 0.00 0.00 1.90
1893 2221 2.965831 GCATCCTCCACTACCTGACATA 59.034 50.000 0.00 0.00 0.00 2.29
1919 2247 4.975502 GTCTATCACGCTCTTCTGAATCTG 59.024 45.833 0.00 0.00 0.00 2.90
2063 2400 4.349048 TGCAGGATATAGCTTCACCAGATT 59.651 41.667 0.00 0.00 0.00 2.40
2213 2550 2.309764 GAATCGCCATCGTGCACCAC 62.310 60.000 12.15 0.00 36.96 4.16
2285 2622 2.550277 TAGACCAAGCAGATGAGGGA 57.450 50.000 0.00 0.00 0.00 4.20
2451 2799 3.897239 ACAGTGACTTGTCAAATTCCCA 58.103 40.909 4.93 0.00 0.00 4.37
2503 2851 4.584327 TTTTTAGCCAAAGCCTCAAGAC 57.416 40.909 0.00 0.00 41.25 3.01
2632 2989 4.919206 TGTAAGGATGCAACAAATATGCG 58.081 39.130 0.00 0.00 46.76 4.73
2905 3262 9.687210 GGAATTTCTTTTTAAACGGAACACTAT 57.313 29.630 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.