Multiple sequence alignment - TraesCS3B01G603300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G603300 chr3B 100.000 2442 0 0 1 2442 822882016 822879575 0.000000e+00 4510.0
1 TraesCS3B01G603300 chr3B 100.000 333 0 0 2904 3236 822879113 822878781 1.650000e-172 616.0
2 TraesCS3B01G603300 chr3D 89.083 1887 81 50 585 2436 613693794 613691998 0.000000e+00 2228.0
3 TraesCS3B01G603300 chr3D 90.046 432 24 10 2 424 613694279 613693858 2.840000e-150 542.0
4 TraesCS3B01G603300 chr3A 93.266 1485 62 23 972 2434 749329873 749328405 0.000000e+00 2154.0
5 TraesCS3B01G603300 chr3A 87.833 600 35 19 23 610 749330671 749330098 0.000000e+00 669.0
6 TraesCS3B01G603300 chr3A 91.139 158 5 4 723 879 749330099 749329950 4.230000e-49 206.0
7 TraesCS3B01G603300 chr3A 100.000 29 0 0 1862 1890 589395281 589395309 2.000000e-03 54.7
8 TraesCS3B01G603300 chr7B 98.498 333 5 0 2904 3236 535509912 535510244 3.600000e-164 588.0
9 TraesCS3B01G603300 chr7B 97.598 333 8 0 2904 3236 676204465 676204797 3.620000e-159 571.0
10 TraesCS3B01G603300 chr4B 73.764 789 161 29 1220 1982 178071375 178072143 5.320000e-68 268.0
11 TraesCS3B01G603300 chr4B 80.456 307 56 4 1220 1524 234806 234502 6.980000e-57 231.0
12 TraesCS3B01G603300 chr4D 76.030 534 104 18 1220 1747 116270444 116270959 4.140000e-64 255.0
13 TraesCS3B01G603300 chr4D 79.805 307 58 4 1220 1524 464699 464395 1.510000e-53 220.0
14 TraesCS3B01G603300 chr6D 73.440 753 152 38 1325 2056 473102647 473103372 4.170000e-59 239.0
15 TraesCS3B01G603300 chr4A 72.877 789 168 32 1220 1982 460239940 460239172 2.510000e-56 230.0
16 TraesCS3B01G603300 chr4A 80.130 307 57 4 1220 1524 194145 193841 3.250000e-55 226.0
17 TraesCS3B01G603300 chr6B 77.684 354 62 11 1577 1927 718475899 718476238 1.970000e-47 200.0
18 TraesCS3B01G603300 chr2A 75.391 256 47 12 1660 1912 51945262 51945504 3.410000e-20 110.0
19 TraesCS3B01G603300 chr2A 86.275 51 7 0 1861 1911 52762104 52762054 4.510000e-04 56.5
20 TraesCS3B01G603300 chr2B 86.957 92 11 1 1660 1750 78072099 78072190 5.710000e-18 102.0
21 TraesCS3B01G603300 chr2B 74.265 272 52 14 1660 1926 77995067 77994809 7.390000e-17 99.0
22 TraesCS3B01G603300 chr2B 84.783 92 13 1 1660 1750 78011548 78011457 1.240000e-14 91.6
23 TraesCS3B01G603300 chr2D 85.870 92 12 1 1660 1750 50160334 50160243 2.660000e-16 97.1
24 TraesCS3B01G603300 chr2D 74.144 263 53 9 1660 1920 39320904 39320655 9.560000e-16 95.3
25 TraesCS3B01G603300 chr2D 84.615 91 13 1 1660 1749 50238179 50238269 4.450000e-14 89.8
26 TraesCS3B01G603300 chr2D 93.023 43 3 0 63 105 19220663 19220621 2.700000e-06 63.9
27 TraesCS3B01G603300 chr6A 96.078 51 2 0 1864 1914 615777477 615777527 2.070000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G603300 chr3B 822878781 822882016 3235 True 2563.000000 4510 100.0000 1 3236 2 chr3B.!!$R1 3235
1 TraesCS3B01G603300 chr3D 613691998 613694279 2281 True 1385.000000 2228 89.5645 2 2436 2 chr3D.!!$R1 2434
2 TraesCS3B01G603300 chr3A 749328405 749330671 2266 True 1009.666667 2154 90.7460 23 2434 3 chr3A.!!$R1 2411
3 TraesCS3B01G603300 chr4B 178071375 178072143 768 False 268.000000 268 73.7640 1220 1982 1 chr4B.!!$F1 762
4 TraesCS3B01G603300 chr4D 116270444 116270959 515 False 255.000000 255 76.0300 1220 1747 1 chr4D.!!$F1 527
5 TraesCS3B01G603300 chr6D 473102647 473103372 725 False 239.000000 239 73.4400 1325 2056 1 chr6D.!!$F1 731
6 TraesCS3B01G603300 chr4A 460239172 460239940 768 True 230.000000 230 72.8770 1220 1982 1 chr4A.!!$R2 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1042 0.725117 CCGGGTAACAGCAAATCGAC 59.275 55.0 0.0 0.0 39.74 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 2456 0.39606 ACAACCAATGGCGCCAAAAT 59.604 45.0 36.33 20.28 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.024048 TGTTTAAGCTTAAGCACAGTGAGC 60.024 41.667 26.14 4.14 45.16 4.26
39 40 4.515567 CAGTGAGCAGCATCATTCATGTAT 59.484 41.667 0.00 0.00 34.56 2.29
89 90 5.622180 AGATTCAGCTAGTGATGCATTCAT 58.378 37.500 0.00 0.00 36.54 2.57
102 103 7.557358 AGTGATGCATTCATATTGTTTACCAGA 59.443 33.333 0.00 0.00 36.54 3.86
112 115 8.729756 TCATATTGTTTACCAGATGAAAGTGTG 58.270 33.333 0.00 0.00 29.23 3.82
124 129 7.300320 CAGATGAAAGTGTGATTGATCGAAAA 58.700 34.615 0.00 0.00 0.00 2.29
161 169 4.222886 CTGACGTGTTTGTGTTTTCAACA 58.777 39.130 0.00 0.00 39.52 3.33
162 170 4.799678 TGACGTGTTTGTGTTTTCAACAT 58.200 34.783 0.00 0.00 44.35 2.71
163 171 5.223382 TGACGTGTTTGTGTTTTCAACATT 58.777 33.333 0.00 0.00 44.35 2.71
175 183 6.144402 GTGTTTTCAACATTATTGGTGCAGAG 59.856 38.462 0.00 0.00 44.35 3.35
310 323 4.019174 AGGCAAACAAATAGAGATGTGGG 58.981 43.478 0.00 0.00 0.00 4.61
323 336 2.014128 GATGTGGGGGTTTGTGTATCG 58.986 52.381 0.00 0.00 0.00 2.92
364 383 2.954989 TGGCTTGTGTGTTGCTAATTGA 59.045 40.909 0.00 0.00 0.00 2.57
365 384 3.004629 TGGCTTGTGTGTTGCTAATTGAG 59.995 43.478 0.00 0.00 0.00 3.02
366 385 3.004734 GGCTTGTGTGTTGCTAATTGAGT 59.995 43.478 0.00 0.00 0.00 3.41
367 386 3.976942 GCTTGTGTGTTGCTAATTGAGTG 59.023 43.478 0.00 0.00 0.00 3.51
479 502 9.729023 TTTCATGTTTCTTGTGTATACTTGTTG 57.271 29.630 4.17 0.00 0.00 3.33
486 509 7.421530 TCTTGTGTATACTTGTTGCTCTTTC 57.578 36.000 4.17 0.00 0.00 2.62
488 511 5.865085 TGTGTATACTTGTTGCTCTTTCCT 58.135 37.500 4.17 0.00 0.00 3.36
490 513 5.932303 GTGTATACTTGTTGCTCTTTCCTGA 59.068 40.000 4.17 0.00 0.00 3.86
492 515 7.119846 GTGTATACTTGTTGCTCTTTCCTGAAT 59.880 37.037 4.17 0.00 0.00 2.57
553 584 2.719739 AGAAATGCAGGTCAGGTGATG 58.280 47.619 0.00 0.00 0.00 3.07
606 637 9.462174 TTTCTTCTTTTTATGCAACACACTATG 57.538 29.630 0.00 0.00 0.00 2.23
610 641 4.598406 TTTATGCAACACACTATGAGCG 57.402 40.909 0.00 0.00 36.21 5.03
626 657 2.817844 TGAGCGTGCGGTGAGTATATAT 59.182 45.455 0.00 0.00 0.00 0.86
628 659 4.638865 TGAGCGTGCGGTGAGTATATATAT 59.361 41.667 0.00 0.00 0.00 0.86
629 660 5.818857 TGAGCGTGCGGTGAGTATATATATA 59.181 40.000 0.00 0.00 0.00 0.86
630 661 6.316890 TGAGCGTGCGGTGAGTATATATATAA 59.683 38.462 3.96 0.00 0.00 0.98
631 662 7.012989 TGAGCGTGCGGTGAGTATATATATAAT 59.987 37.037 3.96 3.18 0.00 1.28
632 663 7.361127 AGCGTGCGGTGAGTATATATATAATC 58.639 38.462 18.89 18.89 34.75 1.75
633 664 7.012989 AGCGTGCGGTGAGTATATATATAATCA 59.987 37.037 22.72 22.72 39.90 2.57
634 665 7.808381 GCGTGCGGTGAGTATATATATAATCAT 59.192 37.037 26.90 6.87 42.75 2.45
635 666 9.118236 CGTGCGGTGAGTATATATATAATCATG 57.882 37.037 26.90 23.13 42.75 3.07
636 667 9.967346 GTGCGGTGAGTATATATATAATCATGT 57.033 33.333 26.90 2.31 42.75 3.21
637 668 9.965824 TGCGGTGAGTATATATATAATCATGTG 57.034 33.333 26.90 21.16 42.75 3.21
638 669 8.916654 GCGGTGAGTATATATATAATCATGTGC 58.083 37.037 26.90 24.77 42.75 4.57
683 714 1.295792 GCGGCGGAAATTATGTCAGA 58.704 50.000 9.78 0.00 0.00 3.27
737 775 2.200792 TGGTGCACGTGTGAAAAATG 57.799 45.000 18.38 0.00 0.00 2.32
738 776 1.474478 TGGTGCACGTGTGAAAAATGT 59.526 42.857 18.38 0.00 0.00 2.71
740 778 3.040099 GGTGCACGTGTGAAAAATGTAC 58.960 45.455 18.38 0.00 0.00 2.90
779 819 7.233348 TGTTGGTGTGCATCTATCTATCTATCA 59.767 37.037 0.00 0.00 0.00 2.15
780 820 7.781324 TGGTGTGCATCTATCTATCTATCAA 57.219 36.000 0.00 0.00 0.00 2.57
782 822 8.473219 TGGTGTGCATCTATCTATCTATCAATC 58.527 37.037 0.00 0.00 0.00 2.67
783 823 8.694540 GGTGTGCATCTATCTATCTATCAATCT 58.305 37.037 0.00 0.00 0.00 2.40
784 824 9.734620 GTGTGCATCTATCTATCTATCAATCTC 57.265 37.037 0.00 0.00 0.00 2.75
785 825 9.697990 TGTGCATCTATCTATCTATCAATCTCT 57.302 33.333 0.00 0.00 0.00 3.10
786 826 9.955208 GTGCATCTATCTATCTATCAATCTCTG 57.045 37.037 0.00 0.00 0.00 3.35
787 827 9.134055 TGCATCTATCTATCTATCAATCTCTGG 57.866 37.037 0.00 0.00 0.00 3.86
788 828 8.084073 GCATCTATCTATCTATCAATCTCTGGC 58.916 40.741 0.00 0.00 0.00 4.85
789 829 8.579006 CATCTATCTATCTATCAATCTCTGGCC 58.421 40.741 0.00 0.00 0.00 5.36
795 835 4.473520 CAATCTCTGGCCGGCCGT 62.474 66.667 39.00 19.99 39.42 5.68
893 934 1.251251 AGCAAGCAAAAGTAGGCTGG 58.749 50.000 0.00 0.00 40.93 4.85
976 1042 0.725117 CCGGGTAACAGCAAATCGAC 59.275 55.000 0.00 0.00 39.74 4.20
1028 1094 2.156917 CTTCTCATGCTTCAAGCCACA 58.843 47.619 7.01 0.00 41.51 4.17
1065 1134 2.285743 GAGGGGGAGGACAAGGCT 60.286 66.667 0.00 0.00 0.00 4.58
1148 1217 3.844090 GCGCTCCTCCTCCTCCAC 61.844 72.222 0.00 0.00 0.00 4.02
1540 1612 4.405671 TCCTCCTCGACGACCGCT 62.406 66.667 0.00 0.00 38.37 5.52
1824 1958 3.295800 GGCACCTACGGCTACTGT 58.704 61.111 0.00 0.00 0.00 3.55
2213 2350 1.303561 AGCTGCAGGCCGATGAAAA 60.304 52.632 17.12 0.00 43.05 2.29
2298 2442 0.750911 GGATGGAGTCGACCGTACCT 60.751 60.000 13.01 0.00 0.00 3.08
2299 2443 1.475751 GGATGGAGTCGACCGTACCTA 60.476 57.143 13.01 3.26 0.00 3.08
2301 2445 2.425143 TGGAGTCGACCGTACCTAAT 57.575 50.000 13.01 0.00 0.00 1.73
2312 2456 5.155278 ACCGTACCTAATGTGTTGATTGA 57.845 39.130 0.00 0.00 0.00 2.57
2920 3080 2.046217 GTCCAGGAGGGCCGAAAC 60.046 66.667 0.00 0.00 39.96 2.78
2921 3081 3.702048 TCCAGGAGGGCCGAAACG 61.702 66.667 0.00 0.00 39.96 3.60
2977 3137 4.162690 GACCAGGAAGGCCGCGAT 62.163 66.667 8.23 0.00 43.14 4.58
2978 3138 4.473520 ACCAGGAAGGCCGCGATG 62.474 66.667 8.23 0.00 43.14 3.84
3001 3161 4.559386 CGCGCGCATTCGGAGAAC 62.559 66.667 32.61 0.00 45.90 3.01
3002 3162 4.223964 GCGCGCATTCGGAGAACC 62.224 66.667 29.10 0.00 45.90 3.62
3012 3172 2.572284 GGAGAACCGTGACCTCCG 59.428 66.667 0.00 0.00 37.35 4.63
3032 3192 2.811317 GCGGTGGCGTGAGAGAAG 60.811 66.667 0.00 0.00 0.00 2.85
3033 3193 2.962569 CGGTGGCGTGAGAGAAGA 59.037 61.111 0.00 0.00 0.00 2.87
3034 3194 1.153939 CGGTGGCGTGAGAGAAGAG 60.154 63.158 0.00 0.00 0.00 2.85
3035 3195 1.216710 GGTGGCGTGAGAGAAGAGG 59.783 63.158 0.00 0.00 0.00 3.69
3036 3196 1.216710 GTGGCGTGAGAGAAGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
3037 3197 2.185608 GGCGTGAGAGAAGAGGGC 59.814 66.667 0.00 0.00 0.00 5.19
3038 3198 2.202676 GCGTGAGAGAAGAGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
3039 3199 2.492090 CGTGAGAGAAGAGGGCGG 59.508 66.667 0.00 0.00 0.00 6.13
3040 3200 2.896443 GTGAGAGAAGAGGGCGGG 59.104 66.667 0.00 0.00 0.00 6.13
3041 3201 2.364317 TGAGAGAAGAGGGCGGGG 60.364 66.667 0.00 0.00 0.00 5.73
3042 3202 2.042843 GAGAGAAGAGGGCGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
3043 3203 1.686110 GAGAGAAGAGGGCGGGGAA 60.686 63.158 0.00 0.00 0.00 3.97
3044 3204 1.962321 GAGAGAAGAGGGCGGGGAAC 61.962 65.000 0.00 0.00 0.00 3.62
3078 3238 4.473520 CGCAGGGGAGCCAACGAT 62.474 66.667 0.00 0.00 0.00 3.73
3079 3239 2.514824 GCAGGGGAGCCAACGATC 60.515 66.667 0.00 0.00 0.00 3.69
3080 3240 2.190578 CAGGGGAGCCAACGATCC 59.809 66.667 0.00 0.00 34.64 3.36
3084 3244 2.124695 GGAGCCAACGATCCCACC 60.125 66.667 0.00 0.00 0.00 4.61
3085 3245 2.668632 GAGCCAACGATCCCACCA 59.331 61.111 0.00 0.00 0.00 4.17
3086 3246 1.450312 GAGCCAACGATCCCACCAG 60.450 63.158 0.00 0.00 0.00 4.00
3087 3247 1.899437 GAGCCAACGATCCCACCAGA 61.899 60.000 0.00 0.00 0.00 3.86
3088 3248 1.002624 GCCAACGATCCCACCAGAA 60.003 57.895 0.00 0.00 0.00 3.02
3089 3249 0.394352 GCCAACGATCCCACCAGAAT 60.394 55.000 0.00 0.00 0.00 2.40
3090 3250 1.382522 CCAACGATCCCACCAGAATG 58.617 55.000 0.00 0.00 0.00 2.67
3091 3251 1.065491 CCAACGATCCCACCAGAATGA 60.065 52.381 0.00 0.00 39.69 2.57
3092 3252 2.283298 CAACGATCCCACCAGAATGAG 58.717 52.381 0.00 0.00 39.69 2.90
3093 3253 0.179000 ACGATCCCACCAGAATGAGC 59.821 55.000 0.00 0.00 39.69 4.26
3094 3254 0.178767 CGATCCCACCAGAATGAGCA 59.821 55.000 0.00 0.00 39.69 4.26
3095 3255 1.809271 CGATCCCACCAGAATGAGCAG 60.809 57.143 0.00 0.00 39.69 4.24
3096 3256 0.549950 ATCCCACCAGAATGAGCAGG 59.450 55.000 0.00 0.00 39.69 4.85
3097 3257 0.842030 TCCCACCAGAATGAGCAGGT 60.842 55.000 0.00 0.00 39.69 4.00
3098 3258 0.393537 CCCACCAGAATGAGCAGGTC 60.394 60.000 0.00 0.00 39.69 3.85
3099 3259 0.393537 CCACCAGAATGAGCAGGTCC 60.394 60.000 0.00 0.00 39.69 4.46
3100 3260 0.742281 CACCAGAATGAGCAGGTCCG 60.742 60.000 0.00 0.00 39.69 4.79
3101 3261 1.817099 CCAGAATGAGCAGGTCCGC 60.817 63.158 0.00 0.00 39.69 5.54
3102 3262 1.817099 CAGAATGAGCAGGTCCGCC 60.817 63.158 0.00 0.00 39.69 6.13
3103 3263 2.514824 GAATGAGCAGGTCCGCCC 60.515 66.667 0.00 0.00 34.57 6.13
3104 3264 3.329542 GAATGAGCAGGTCCGCCCA 62.330 63.158 0.00 0.00 34.66 5.36
3105 3265 2.615227 GAATGAGCAGGTCCGCCCAT 62.615 60.000 0.00 0.47 34.66 4.00
3106 3266 2.615227 AATGAGCAGGTCCGCCCATC 62.615 60.000 0.00 0.00 34.66 3.51
3107 3267 4.554036 GAGCAGGTCCGCCCATCC 62.554 72.222 2.61 0.00 34.66 3.51
3118 3278 3.420482 CCCATCCCCCACCTCCAC 61.420 72.222 0.00 0.00 0.00 4.02
3119 3279 3.420482 CCATCCCCCACCTCCACC 61.420 72.222 0.00 0.00 0.00 4.61
3120 3280 3.797353 CATCCCCCACCTCCACCG 61.797 72.222 0.00 0.00 0.00 4.94
3121 3281 4.348495 ATCCCCCACCTCCACCGT 62.348 66.667 0.00 0.00 0.00 4.83
3135 3295 3.991051 CCGTGGTGAGCTGACGGT 61.991 66.667 12.77 0.00 46.11 4.83
3136 3296 2.632544 CCGTGGTGAGCTGACGGTA 61.633 63.158 12.77 0.00 46.11 4.02
3137 3297 1.154016 CGTGGTGAGCTGACGGTAG 60.154 63.158 0.00 0.00 0.00 3.18
3138 3298 1.583495 CGTGGTGAGCTGACGGTAGA 61.583 60.000 0.00 0.00 0.00 2.59
3139 3299 0.171455 GTGGTGAGCTGACGGTAGAG 59.829 60.000 0.00 0.00 0.00 2.43
3140 3300 0.037734 TGGTGAGCTGACGGTAGAGA 59.962 55.000 0.00 0.00 0.00 3.10
3141 3301 0.736053 GGTGAGCTGACGGTAGAGAG 59.264 60.000 0.00 0.00 0.00 3.20
3142 3302 0.736053 GTGAGCTGACGGTAGAGAGG 59.264 60.000 0.00 0.00 0.00 3.69
3143 3303 0.618981 TGAGCTGACGGTAGAGAGGA 59.381 55.000 0.00 0.00 0.00 3.71
3144 3304 1.004394 TGAGCTGACGGTAGAGAGGAA 59.996 52.381 0.00 0.00 0.00 3.36
3145 3305 1.673920 GAGCTGACGGTAGAGAGGAAG 59.326 57.143 0.00 0.00 0.00 3.46
3146 3306 1.282447 AGCTGACGGTAGAGAGGAAGA 59.718 52.381 0.00 0.00 0.00 2.87
3147 3307 2.093106 GCTGACGGTAGAGAGGAAGAA 58.907 52.381 0.00 0.00 0.00 2.52
3148 3308 2.098443 GCTGACGGTAGAGAGGAAGAAG 59.902 54.545 0.00 0.00 0.00 2.85
3149 3309 2.093106 TGACGGTAGAGAGGAAGAAGC 58.907 52.381 0.00 0.00 0.00 3.86
3150 3310 2.291024 TGACGGTAGAGAGGAAGAAGCT 60.291 50.000 0.00 0.00 0.00 3.74
3151 3311 2.756207 GACGGTAGAGAGGAAGAAGCTT 59.244 50.000 0.00 0.00 0.00 3.74
3152 3312 3.946558 GACGGTAGAGAGGAAGAAGCTTA 59.053 47.826 0.00 0.00 0.00 3.09
3153 3313 3.949113 ACGGTAGAGAGGAAGAAGCTTAG 59.051 47.826 0.00 0.00 0.00 2.18
3154 3314 3.243267 CGGTAGAGAGGAAGAAGCTTAGC 60.243 52.174 0.00 0.00 0.00 3.09
3155 3315 3.069016 GGTAGAGAGGAAGAAGCTTAGCC 59.931 52.174 0.00 0.75 0.00 3.93
3156 3316 2.826488 AGAGAGGAAGAAGCTTAGCCA 58.174 47.619 0.00 0.00 0.00 4.75
3157 3317 2.765699 AGAGAGGAAGAAGCTTAGCCAG 59.234 50.000 0.00 0.00 0.00 4.85
3158 3318 2.763448 GAGAGGAAGAAGCTTAGCCAGA 59.237 50.000 0.00 0.00 0.00 3.86
3159 3319 2.765699 AGAGGAAGAAGCTTAGCCAGAG 59.234 50.000 0.00 0.00 0.00 3.35
3160 3320 2.763448 GAGGAAGAAGCTTAGCCAGAGA 59.237 50.000 0.00 0.00 0.00 3.10
3161 3321 2.765699 AGGAAGAAGCTTAGCCAGAGAG 59.234 50.000 0.00 0.00 0.00 3.20
3162 3322 2.549926 GAAGAAGCTTAGCCAGAGAGC 58.450 52.381 0.00 0.00 36.68 4.09
3163 3323 1.566211 AGAAGCTTAGCCAGAGAGCA 58.434 50.000 0.00 0.00 38.85 4.26
3164 3324 1.206849 AGAAGCTTAGCCAGAGAGCAC 59.793 52.381 0.00 0.00 38.85 4.40
3165 3325 0.251634 AAGCTTAGCCAGAGAGCACC 59.748 55.000 0.00 0.00 38.85 5.01
3166 3326 1.520342 GCTTAGCCAGAGAGCACCG 60.520 63.158 0.00 0.00 36.45 4.94
3167 3327 1.949847 GCTTAGCCAGAGAGCACCGA 61.950 60.000 0.00 0.00 36.45 4.69
3168 3328 0.749649 CTTAGCCAGAGAGCACCGAT 59.250 55.000 0.00 0.00 34.23 4.18
3169 3329 0.461548 TTAGCCAGAGAGCACCGATG 59.538 55.000 0.00 0.00 34.23 3.84
3202 3362 2.578178 CTCGCGACGAGCCAAGAG 60.578 66.667 3.71 0.00 46.75 2.85
3203 3363 3.329688 CTCGCGACGAGCCAAGAGT 62.330 63.158 3.71 0.00 46.75 3.24
3204 3364 3.175240 CGCGACGAGCCAAGAGTG 61.175 66.667 0.00 0.00 44.76 3.51
3205 3365 2.258591 GCGACGAGCCAAGAGTGA 59.741 61.111 0.00 0.00 40.81 3.41
3206 3366 1.153745 GCGACGAGCCAAGAGTGAT 60.154 57.895 0.00 0.00 40.81 3.06
3207 3367 0.100682 GCGACGAGCCAAGAGTGATA 59.899 55.000 0.00 0.00 40.81 2.15
3208 3368 1.862008 GCGACGAGCCAAGAGTGATAG 60.862 57.143 0.00 0.00 40.81 2.08
3209 3369 1.846541 GACGAGCCAAGAGTGATAGC 58.153 55.000 0.00 0.00 0.00 2.97
3210 3370 0.461961 ACGAGCCAAGAGTGATAGCC 59.538 55.000 0.00 0.00 0.00 3.93
3211 3371 0.249657 CGAGCCAAGAGTGATAGCCC 60.250 60.000 0.00 0.00 0.00 5.19
3212 3372 0.249657 GAGCCAAGAGTGATAGCCCG 60.250 60.000 0.00 0.00 0.00 6.13
3213 3373 0.978146 AGCCAAGAGTGATAGCCCGT 60.978 55.000 0.00 0.00 0.00 5.28
3214 3374 0.530870 GCCAAGAGTGATAGCCCGTC 60.531 60.000 0.00 0.00 0.00 4.79
3215 3375 0.105039 CCAAGAGTGATAGCCCGTCC 59.895 60.000 0.00 0.00 0.00 4.79
3216 3376 0.249073 CAAGAGTGATAGCCCGTCCG 60.249 60.000 0.00 0.00 0.00 4.79
3217 3377 2.017559 AAGAGTGATAGCCCGTCCGC 62.018 60.000 0.00 0.00 0.00 5.54
3218 3378 3.825833 GAGTGATAGCCCGTCCGCG 62.826 68.421 0.00 0.00 37.95 6.46
3234 3394 3.302344 CGCCACCCCAAACCCAAG 61.302 66.667 0.00 0.00 0.00 3.61
3235 3395 2.200092 GCCACCCCAAACCCAAGA 59.800 61.111 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.024048 GCTCACTGTGCTTAAGCTTAAACA 60.024 41.667 26.90 20.51 42.66 2.83
11 12 0.250597 TGATGCTGCTCACTGTGCTT 60.251 50.000 2.12 0.00 0.00 3.91
49 50 5.384336 TGAATCTCCATTCAGACCAAAACA 58.616 37.500 0.00 0.00 42.99 2.83
50 51 5.964958 TGAATCTCCATTCAGACCAAAAC 57.035 39.130 0.00 0.00 42.99 2.43
59 60 5.608449 CATCACTAGCTGAATCTCCATTCA 58.392 41.667 0.00 0.00 45.20 2.57
60 61 4.451774 GCATCACTAGCTGAATCTCCATTC 59.548 45.833 0.00 0.00 39.24 2.67
61 62 4.141551 TGCATCACTAGCTGAATCTCCATT 60.142 41.667 0.00 0.00 30.60 3.16
89 90 8.862325 ATCACACTTTCATCTGGTAAACAATA 57.138 30.769 0.00 0.00 0.00 1.90
161 169 6.252599 TCCTGTTATCTCTGCACCAATAAT 57.747 37.500 0.00 0.00 0.00 1.28
162 170 5.692115 TCCTGTTATCTCTGCACCAATAA 57.308 39.130 0.00 0.00 0.00 1.40
163 171 5.189736 ACTTCCTGTTATCTCTGCACCAATA 59.810 40.000 0.00 0.00 0.00 1.90
175 183 4.207891 TCCTTGCTCACTTCCTGTTATC 57.792 45.455 0.00 0.00 0.00 1.75
310 323 9.628746 AATTACAATTTAACGATACACAAACCC 57.371 29.630 0.00 0.00 0.00 4.11
323 336 7.177832 AGCCAACCCCTAATTACAATTTAAC 57.822 36.000 0.00 0.00 0.00 2.01
364 383 4.835615 CCAAGTATACTAGGGCATCTCACT 59.164 45.833 5.65 0.00 0.00 3.41
365 384 4.589374 ACCAAGTATACTAGGGCATCTCAC 59.411 45.833 18.72 0.00 0.00 3.51
366 385 4.816126 ACCAAGTATACTAGGGCATCTCA 58.184 43.478 18.72 0.00 0.00 3.27
367 386 6.011481 AGTACCAAGTATACTAGGGCATCTC 58.989 44.000 18.72 8.57 30.94 2.75
472 495 5.859205 AAATTCAGGAAAGAGCAACAAGT 57.141 34.783 0.00 0.00 0.00 3.16
517 540 7.092137 TGCATTTCTTCTTCATGGAATGTAG 57.908 36.000 0.00 0.00 46.80 2.74
534 565 2.715046 TCATCACCTGACCTGCATTTC 58.285 47.619 0.00 0.00 0.00 2.17
553 584 9.453572 TGATATGATGCTATATTTTCCAGGTTC 57.546 33.333 0.00 0.00 0.00 3.62
583 614 7.272084 GCTCATAGTGTGTTGCATAAAAAGAAG 59.728 37.037 0.00 0.00 0.00 2.85
606 637 2.983402 TATATACTCACCGCACGCTC 57.017 50.000 0.00 0.00 0.00 5.03
610 641 9.967346 ACATGATTATATATATACTCACCGCAC 57.033 33.333 19.51 0.00 32.83 5.34
683 714 8.579850 ACTCAATGTAACAATGTATCCACAAT 57.420 30.769 0.00 0.00 38.42 2.71
702 733 8.128582 CACGTGCACCAAAATTATATACTCAAT 58.871 33.333 12.15 0.00 0.00 2.57
703 734 7.119992 ACACGTGCACCAAAATTATATACTCAA 59.880 33.333 17.22 0.00 0.00 3.02
704 735 6.596106 ACACGTGCACCAAAATTATATACTCA 59.404 34.615 17.22 0.00 0.00 3.41
705 736 6.905076 CACACGTGCACCAAAATTATATACTC 59.095 38.462 17.22 0.00 0.00 2.59
706 737 6.596106 TCACACGTGCACCAAAATTATATACT 59.404 34.615 17.22 0.00 0.00 2.12
707 738 6.777101 TCACACGTGCACCAAAATTATATAC 58.223 36.000 17.22 0.00 0.00 1.47
709 740 5.888691 TCACACGTGCACCAAAATTATAT 57.111 34.783 17.22 0.00 0.00 0.86
710 741 5.690997 TTCACACGTGCACCAAAATTATA 57.309 34.783 17.22 0.00 0.00 0.98
711 742 4.576216 TTCACACGTGCACCAAAATTAT 57.424 36.364 17.22 0.00 0.00 1.28
713 744 2.949451 TTCACACGTGCACCAAAATT 57.051 40.000 17.22 0.00 0.00 1.82
714 745 2.949451 TTTCACACGTGCACCAAAAT 57.051 40.000 17.22 0.00 0.00 1.82
715 746 2.724977 TTTTCACACGTGCACCAAAA 57.275 40.000 17.22 12.22 0.00 2.44
718 749 1.474478 ACATTTTTCACACGTGCACCA 59.526 42.857 17.22 0.00 0.00 4.17
720 751 3.947626 AGTACATTTTTCACACGTGCAC 58.052 40.909 17.22 6.82 0.00 4.57
722 753 5.338614 AGTAGTACATTTTTCACACGTGC 57.661 39.130 17.22 0.00 0.00 5.34
737 775 5.699458 ACACCAACAATGTAGCAAGTAGTAC 59.301 40.000 0.00 0.00 0.00 2.73
738 776 5.699001 CACACCAACAATGTAGCAAGTAGTA 59.301 40.000 0.00 0.00 0.00 1.82
740 778 4.613622 GCACACCAACAATGTAGCAAGTAG 60.614 45.833 0.00 0.00 0.00 2.57
779 819 4.162690 GACGGCCGGCCAGAGATT 62.163 66.667 42.78 20.35 35.37 2.40
795 835 0.680921 AATTAGGACGGACGGACGGA 60.681 55.000 6.00 0.00 38.39 4.69
1044 1113 2.678934 TTGTCCTCCCCCTCGTCG 60.679 66.667 0.00 0.00 0.00 5.12
1047 1116 3.787001 GCCTTGTCCTCCCCCTCG 61.787 72.222 0.00 0.00 0.00 4.63
1052 1121 3.787001 CCGGAGCCTTGTCCTCCC 61.787 72.222 0.00 0.00 44.86 4.30
1089 1158 2.587194 CGCTTGATGGAGCCCGAG 60.587 66.667 0.00 0.00 39.51 4.63
1090 1159 4.161295 CCGCTTGATGGAGCCCGA 62.161 66.667 0.00 0.00 39.51 5.14
1092 1161 4.496336 AGCCGCTTGATGGAGCCC 62.496 66.667 0.00 0.00 39.51 5.19
1093 1162 2.899339 GAGCCGCTTGATGGAGCC 60.899 66.667 0.00 0.00 39.51 4.70
1824 1958 4.201679 CGGATGTACTCGGGCGCA 62.202 66.667 10.83 0.00 0.00 6.09
2213 2350 1.346068 AGGCTTCTTCTTCTCGCAAGT 59.654 47.619 0.00 0.00 39.48 3.16
2298 2442 4.624882 GCGCCAAAATCAATCAACACATTA 59.375 37.500 0.00 0.00 0.00 1.90
2299 2443 3.432933 GCGCCAAAATCAATCAACACATT 59.567 39.130 0.00 0.00 0.00 2.71
2301 2445 2.402305 GCGCCAAAATCAATCAACACA 58.598 42.857 0.00 0.00 0.00 3.72
2312 2456 0.396060 ACAACCAATGGCGCCAAAAT 59.604 45.000 36.33 20.28 0.00 1.82
2903 3063 2.046217 GTTTCGGCCCTCCTGGAC 60.046 66.667 0.00 0.00 39.70 4.02
2904 3064 3.702048 CGTTTCGGCCCTCCTGGA 61.702 66.667 0.00 0.00 35.39 3.86
2905 3065 4.778143 CCGTTTCGGCCCTCCTGG 62.778 72.222 0.00 0.00 41.17 4.45
2960 3120 4.162690 ATCGCGGCCTTCCTGGTC 62.163 66.667 6.13 0.00 38.35 4.02
2961 3121 4.473520 CATCGCGGCCTTCCTGGT 62.474 66.667 6.13 0.00 38.35 4.00
2984 3144 4.559386 GTTCTCCGAATGCGCGCG 62.559 66.667 28.44 28.44 35.83 6.86
2985 3145 4.223964 GGTTCTCCGAATGCGCGC 62.224 66.667 27.26 27.26 35.83 6.86
2995 3155 2.572284 CGGAGGTCACGGTTCTCC 59.428 66.667 10.31 10.31 42.60 3.71
3015 3175 2.811317 CTTCTCTCACGCCACCGC 60.811 66.667 0.00 0.00 38.22 5.68
3016 3176 1.153939 CTCTTCTCTCACGCCACCG 60.154 63.158 0.00 0.00 41.14 4.94
3017 3177 1.216710 CCTCTTCTCTCACGCCACC 59.783 63.158 0.00 0.00 0.00 4.61
3018 3178 1.216710 CCCTCTTCTCTCACGCCAC 59.783 63.158 0.00 0.00 0.00 5.01
3019 3179 2.650116 GCCCTCTTCTCTCACGCCA 61.650 63.158 0.00 0.00 0.00 5.69
3020 3180 2.185608 GCCCTCTTCTCTCACGCC 59.814 66.667 0.00 0.00 0.00 5.68
3021 3181 2.202676 CGCCCTCTTCTCTCACGC 60.203 66.667 0.00 0.00 0.00 5.34
3022 3182 2.492090 CCGCCCTCTTCTCTCACG 59.508 66.667 0.00 0.00 0.00 4.35
3023 3183 2.726351 CCCCGCCCTCTTCTCTCAC 61.726 68.421 0.00 0.00 0.00 3.51
3024 3184 2.364317 CCCCGCCCTCTTCTCTCA 60.364 66.667 0.00 0.00 0.00 3.27
3025 3185 1.686110 TTCCCCGCCCTCTTCTCTC 60.686 63.158 0.00 0.00 0.00 3.20
3026 3186 1.990614 GTTCCCCGCCCTCTTCTCT 60.991 63.158 0.00 0.00 0.00 3.10
3027 3187 2.585153 GTTCCCCGCCCTCTTCTC 59.415 66.667 0.00 0.00 0.00 2.87
3028 3188 3.391382 CGTTCCCCGCCCTCTTCT 61.391 66.667 0.00 0.00 0.00 2.85
3061 3221 4.473520 ATCGTTGGCTCCCCTGCG 62.474 66.667 0.00 0.00 0.00 5.18
3062 3222 2.514824 GATCGTTGGCTCCCCTGC 60.515 66.667 0.00 0.00 0.00 4.85
3063 3223 2.190578 GGATCGTTGGCTCCCCTG 59.809 66.667 0.00 0.00 0.00 4.45
3064 3224 3.090532 GGGATCGTTGGCTCCCCT 61.091 66.667 0.00 0.00 44.68 4.79
3067 3227 2.124695 GGTGGGATCGTTGGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
3068 3228 1.450312 CTGGTGGGATCGTTGGCTC 60.450 63.158 0.00 0.00 0.00 4.70
3069 3229 1.488705 TTCTGGTGGGATCGTTGGCT 61.489 55.000 0.00 0.00 0.00 4.75
3070 3230 0.394352 ATTCTGGTGGGATCGTTGGC 60.394 55.000 0.00 0.00 0.00 4.52
3071 3231 1.065491 TCATTCTGGTGGGATCGTTGG 60.065 52.381 0.00 0.00 0.00 3.77
3072 3232 2.283298 CTCATTCTGGTGGGATCGTTG 58.717 52.381 0.00 0.00 0.00 4.10
3073 3233 1.407437 GCTCATTCTGGTGGGATCGTT 60.407 52.381 0.00 0.00 0.00 3.85
3074 3234 0.179000 GCTCATTCTGGTGGGATCGT 59.821 55.000 0.00 0.00 0.00 3.73
3075 3235 0.178767 TGCTCATTCTGGTGGGATCG 59.821 55.000 0.00 0.00 0.00 3.69
3076 3236 1.476471 CCTGCTCATTCTGGTGGGATC 60.476 57.143 0.00 0.00 0.00 3.36
3077 3237 0.549950 CCTGCTCATTCTGGTGGGAT 59.450 55.000 0.00 0.00 0.00 3.85
3078 3238 0.842030 ACCTGCTCATTCTGGTGGGA 60.842 55.000 0.00 0.00 36.99 4.37
3079 3239 0.393537 GACCTGCTCATTCTGGTGGG 60.394 60.000 0.00 0.00 38.23 4.61
3080 3240 0.393537 GGACCTGCTCATTCTGGTGG 60.394 60.000 0.00 0.00 38.23 4.61
3081 3241 0.742281 CGGACCTGCTCATTCTGGTG 60.742 60.000 0.00 0.00 38.23 4.17
3082 3242 1.599047 CGGACCTGCTCATTCTGGT 59.401 57.895 0.00 0.00 40.38 4.00
3083 3243 1.817099 GCGGACCTGCTCATTCTGG 60.817 63.158 1.67 0.00 0.00 3.86
3084 3244 1.817099 GGCGGACCTGCTCATTCTG 60.817 63.158 7.98 0.00 34.52 3.02
3085 3245 2.586792 GGCGGACCTGCTCATTCT 59.413 61.111 7.98 0.00 34.52 2.40
3086 3246 2.514824 GGGCGGACCTGCTCATTC 60.515 66.667 0.00 0.00 34.69 2.67
3087 3247 3.329889 TGGGCGGACCTGCTCATT 61.330 61.111 0.00 0.00 41.34 2.57
3090 3250 4.554036 GGATGGGCGGACCTGCTC 62.554 72.222 0.00 5.01 41.11 4.26
3101 3261 3.420482 GTGGAGGTGGGGGATGGG 61.420 72.222 0.00 0.00 0.00 4.00
3102 3262 3.420482 GGTGGAGGTGGGGGATGG 61.420 72.222 0.00 0.00 0.00 3.51
3103 3263 3.797353 CGGTGGAGGTGGGGGATG 61.797 72.222 0.00 0.00 0.00 3.51
3104 3264 4.348495 ACGGTGGAGGTGGGGGAT 62.348 66.667 0.00 0.00 0.00 3.85
3111 3271 3.626924 GCTCACCACGGTGGAGGT 61.627 66.667 32.72 8.66 45.43 3.85
3112 3272 3.314331 AGCTCACCACGGTGGAGG 61.314 66.667 32.72 22.54 45.43 4.30
3113 3273 2.047844 CAGCTCACCACGGTGGAG 60.048 66.667 32.72 24.85 45.43 3.86
3114 3274 2.523168 TCAGCTCACCACGGTGGA 60.523 61.111 32.72 11.26 45.43 4.02
3115 3275 2.357517 GTCAGCTCACCACGGTGG 60.358 66.667 25.21 25.21 45.43 4.61
3116 3276 2.734723 CGTCAGCTCACCACGGTG 60.735 66.667 10.09 10.09 46.64 4.94
3117 3277 3.991051 CCGTCAGCTCACCACGGT 61.991 66.667 12.77 0.00 46.58 4.83
3119 3279 1.154016 CTACCGTCAGCTCACCACG 60.154 63.158 0.00 0.00 0.00 4.94
3120 3280 0.171455 CTCTACCGTCAGCTCACCAC 59.829 60.000 0.00 0.00 0.00 4.16
3121 3281 0.037734 TCTCTACCGTCAGCTCACCA 59.962 55.000 0.00 0.00 0.00 4.17
3122 3282 0.736053 CTCTCTACCGTCAGCTCACC 59.264 60.000 0.00 0.00 0.00 4.02
3123 3283 0.736053 CCTCTCTACCGTCAGCTCAC 59.264 60.000 0.00 0.00 0.00 3.51
3124 3284 0.618981 TCCTCTCTACCGTCAGCTCA 59.381 55.000 0.00 0.00 0.00 4.26
3125 3285 1.673920 CTTCCTCTCTACCGTCAGCTC 59.326 57.143 0.00 0.00 0.00 4.09
3126 3286 1.282447 TCTTCCTCTCTACCGTCAGCT 59.718 52.381 0.00 0.00 0.00 4.24
3127 3287 1.752683 TCTTCCTCTCTACCGTCAGC 58.247 55.000 0.00 0.00 0.00 4.26
3128 3288 2.098443 GCTTCTTCCTCTCTACCGTCAG 59.902 54.545 0.00 0.00 0.00 3.51
3129 3289 2.093106 GCTTCTTCCTCTCTACCGTCA 58.907 52.381 0.00 0.00 0.00 4.35
3130 3290 2.371306 AGCTTCTTCCTCTCTACCGTC 58.629 52.381 0.00 0.00 0.00 4.79
3131 3291 2.517998 AGCTTCTTCCTCTCTACCGT 57.482 50.000 0.00 0.00 0.00 4.83
3132 3292 3.243267 GCTAAGCTTCTTCCTCTCTACCG 60.243 52.174 0.00 0.00 0.00 4.02
3133 3293 3.069016 GGCTAAGCTTCTTCCTCTCTACC 59.931 52.174 0.00 0.00 0.00 3.18
3134 3294 3.702045 TGGCTAAGCTTCTTCCTCTCTAC 59.298 47.826 0.00 0.00 0.00 2.59
3135 3295 3.957497 CTGGCTAAGCTTCTTCCTCTCTA 59.043 47.826 0.00 0.00 0.00 2.43
3136 3296 2.765699 CTGGCTAAGCTTCTTCCTCTCT 59.234 50.000 0.00 0.00 0.00 3.10
3137 3297 2.763448 TCTGGCTAAGCTTCTTCCTCTC 59.237 50.000 0.00 0.00 0.00 3.20
3138 3298 2.765699 CTCTGGCTAAGCTTCTTCCTCT 59.234 50.000 0.00 0.00 0.00 3.69
3139 3299 2.763448 TCTCTGGCTAAGCTTCTTCCTC 59.237 50.000 0.00 0.00 0.00 3.71
3140 3300 2.765699 CTCTCTGGCTAAGCTTCTTCCT 59.234 50.000 0.00 0.00 0.00 3.36
3141 3301 2.741553 GCTCTCTGGCTAAGCTTCTTCC 60.742 54.545 0.00 3.23 33.23 3.46
3142 3302 2.093764 TGCTCTCTGGCTAAGCTTCTTC 60.094 50.000 0.00 0.00 36.96 2.87
3143 3303 1.905215 TGCTCTCTGGCTAAGCTTCTT 59.095 47.619 0.00 0.00 36.96 2.52
3144 3304 1.206849 GTGCTCTCTGGCTAAGCTTCT 59.793 52.381 0.00 0.00 36.96 2.85
3145 3305 1.650825 GTGCTCTCTGGCTAAGCTTC 58.349 55.000 0.00 0.00 36.96 3.86
3146 3306 0.251634 GGTGCTCTCTGGCTAAGCTT 59.748 55.000 3.48 3.48 36.96 3.74
3147 3307 1.904032 GGTGCTCTCTGGCTAAGCT 59.096 57.895 0.00 0.00 36.96 3.74
3148 3308 1.520342 CGGTGCTCTCTGGCTAAGC 60.520 63.158 0.00 0.00 36.56 3.09
3149 3309 0.749649 ATCGGTGCTCTCTGGCTAAG 59.250 55.000 0.00 0.00 0.00 2.18
3150 3310 0.461548 CATCGGTGCTCTCTGGCTAA 59.538 55.000 0.00 0.00 0.00 3.09
3151 3311 2.119009 CATCGGTGCTCTCTGGCTA 58.881 57.895 0.00 0.00 0.00 3.93
3152 3312 2.898738 CATCGGTGCTCTCTGGCT 59.101 61.111 0.00 0.00 0.00 4.75
3178 3338 3.318555 CTCGTCGCGAGCTGATGC 61.319 66.667 10.24 0.00 46.75 3.91
3186 3346 3.362797 ACTCTTGGCTCGTCGCGA 61.363 61.111 3.71 3.71 40.44 5.87
3187 3347 2.874010 ATCACTCTTGGCTCGTCGCG 62.874 60.000 0.00 0.00 40.44 5.87
3188 3348 0.100682 TATCACTCTTGGCTCGTCGC 59.899 55.000 0.00 0.00 38.13 5.19
3189 3349 1.862008 GCTATCACTCTTGGCTCGTCG 60.862 57.143 0.00 0.00 0.00 5.12
3190 3350 1.537135 GGCTATCACTCTTGGCTCGTC 60.537 57.143 0.00 0.00 0.00 4.20
3191 3351 0.461961 GGCTATCACTCTTGGCTCGT 59.538 55.000 0.00 0.00 0.00 4.18
3192 3352 0.249657 GGGCTATCACTCTTGGCTCG 60.250 60.000 0.00 0.00 0.00 5.03
3193 3353 0.249657 CGGGCTATCACTCTTGGCTC 60.250 60.000 0.00 0.00 0.00 4.70
3194 3354 0.978146 ACGGGCTATCACTCTTGGCT 60.978 55.000 0.00 0.00 0.00 4.75
3195 3355 0.530870 GACGGGCTATCACTCTTGGC 60.531 60.000 0.00 0.00 0.00 4.52
3196 3356 0.105039 GGACGGGCTATCACTCTTGG 59.895 60.000 0.00 0.00 0.00 3.61
3197 3357 0.249073 CGGACGGGCTATCACTCTTG 60.249 60.000 0.00 0.00 0.00 3.02
3198 3358 2.017559 GCGGACGGGCTATCACTCTT 62.018 60.000 0.00 0.00 0.00 2.85
3199 3359 2.491022 GCGGACGGGCTATCACTCT 61.491 63.158 0.00 0.00 0.00 3.24
3200 3360 2.027751 GCGGACGGGCTATCACTC 59.972 66.667 0.00 0.00 0.00 3.51
3201 3361 3.900892 CGCGGACGGGCTATCACT 61.901 66.667 0.00 0.00 34.97 3.41
3217 3377 3.302344 CTTGGGTTTGGGGTGGCG 61.302 66.667 0.00 0.00 0.00 5.69
3218 3378 2.200092 TCTTGGGTTTGGGGTGGC 59.800 61.111 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.