Multiple sequence alignment - TraesCS3B01G602000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G602000 chr3B 100.000 3632 0 0 1 3632 822102561 822106192 0.000000e+00 6708.0
1 TraesCS3B01G602000 chr3B 92.308 130 4 5 3502 3629 821839681 821839806 2.880000e-41 180.0
2 TraesCS3B01G602000 chr3B 89.362 141 9 4 3494 3632 821852203 821852339 4.820000e-39 172.0
3 TraesCS3B01G602000 chr3B 90.698 129 7 4 3503 3627 822187861 822187988 2.240000e-37 167.0
4 TraesCS3B01G602000 chr3B 88.571 140 6 10 3498 3630 805646625 805646761 1.040000e-35 161.0
5 TraesCS3B01G602000 chr3B 89.764 127 5 7 3503 3624 821779046 821779169 4.860000e-34 156.0
6 TraesCS3B01G602000 chr3B 91.228 114 6 4 2447 2557 821839478 821839590 6.280000e-33 152.0
7 TraesCS3B01G602000 chr3B 86.260 131 13 3 3503 3630 822063770 822063898 1.760000e-28 137.0
8 TraesCS3B01G602000 chr3B 82.278 79 7 3 1059 1131 70314924 70314847 1.090000e-05 62.1
9 TraesCS3B01G602000 chr3A 84.400 1641 121 65 1603 3147 744378812 744380413 0.000000e+00 1487.0
10 TraesCS3B01G602000 chr3A 85.595 479 67 2 222 698 584028147 584028625 5.410000e-138 501.0
11 TraesCS3B01G602000 chr3A 91.167 317 10 7 873 1173 744377686 744378000 7.260000e-112 414.0
12 TraesCS3B01G602000 chr3A 88.288 222 21 5 1 221 744280455 744280672 1.000000e-65 261.0
13 TraesCS3B01G602000 chr3A 91.304 115 8 2 3503 3615 744380656 744380770 4.860000e-34 156.0
14 TraesCS3B01G602000 chr3A 88.983 118 7 4 3504 3615 744059643 744059760 1.360000e-29 141.0
15 TraesCS3B01G602000 chr3A 83.333 150 17 5 3224 3373 728892565 728892706 8.180000e-27 132.0
16 TraesCS3B01G602000 chr3A 100.000 29 0 0 1059 1087 56772824 56772796 2.000000e-03 54.7
17 TraesCS3B01G602000 chr3D 81.066 1595 146 71 1825 3328 610200399 610201928 0.000000e+00 1129.0
18 TraesCS3B01G602000 chr3D 89.402 368 8 9 821 1168 610199521 610199877 5.570000e-118 435.0
19 TraesCS3B01G602000 chr3D 85.938 64 8 1 1059 1121 45020937 45020874 2.340000e-07 67.6
20 TraesCS3B01G602000 chr6B 96.918 584 15 2 1178 1758 245153522 245154105 0.000000e+00 976.0
21 TraesCS3B01G602000 chr6B 96.923 455 14 0 1304 1758 139344689 139345143 0.000000e+00 763.0
22 TraesCS3B01G602000 chr4B 96.747 584 16 2 1178 1758 656779371 656779954 0.000000e+00 970.0
23 TraesCS3B01G602000 chr1B 96.062 584 20 2 1178 1758 128087448 128088031 0.000000e+00 948.0
24 TraesCS3B01G602000 chr1B 94.188 585 22 6 1178 1758 71570209 71569633 0.000000e+00 881.0
25 TraesCS3B01G602000 chr1B 83.953 511 72 8 222 727 679234284 679233779 7.050000e-132 481.0
26 TraesCS3B01G602000 chr1B 87.879 132 7 6 3499 3626 637554968 637555094 2.920000e-31 147.0
27 TraesCS3B01G602000 chr5D 81.686 1032 119 41 1842 2848 50503009 50502023 0.000000e+00 795.0
28 TraesCS3B01G602000 chr5D 94.737 171 9 0 998 1168 50504295 50504125 2.150000e-67 267.0
29 TraesCS3B01G602000 chr5A 80.267 1125 126 48 1842 2927 39854915 39853848 0.000000e+00 760.0
30 TraesCS3B01G602000 chr5A 95.322 171 8 0 998 1168 39856269 39856099 4.620000e-69 272.0
31 TraesCS3B01G602000 chr6D 85.484 496 67 5 222 714 400091896 400092389 2.500000e-141 512.0
32 TraesCS3B01G602000 chr1D 86.105 475 62 4 223 696 439108791 439108320 3.240000e-140 508.0
33 TraesCS3B01G602000 chr7B 85.863 481 61 7 222 698 35636584 35636107 4.190000e-139 505.0
34 TraesCS3B01G602000 chrUn 85.595 479 65 4 222 698 380756639 380756163 1.950000e-137 499.0
35 TraesCS3B01G602000 chr1A 84.970 499 68 7 222 716 30253183 30252688 1.950000e-137 499.0
36 TraesCS3B01G602000 chr7D 85.625 480 61 7 222 699 91748894 91748421 7.000000e-137 497.0
37 TraesCS3B01G602000 chr4A 84.909 497 70 5 222 714 4623139 4623634 7.000000e-137 497.0
38 TraesCS3B01G602000 chr5B 84.521 491 44 16 2385 2855 53255729 53255251 1.190000e-124 457.0
39 TraesCS3B01G602000 chr5B 83.162 487 56 14 1842 2309 53256207 53255728 4.340000e-114 422.0
40 TraesCS3B01G602000 chr5B 94.152 171 10 0 998 1168 53257560 53257390 1.000000e-65 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G602000 chr3B 822102561 822106192 3631 False 6708.000000 6708 100.000000 1 3632 1 chr3B.!!$F5 3631
1 TraesCS3B01G602000 chr3A 744377686 744380770 3084 False 685.666667 1487 88.957000 873 3615 3 chr3A.!!$F5 2742
2 TraesCS3B01G602000 chr3D 610199521 610201928 2407 False 782.000000 1129 85.234000 821 3328 2 chr3D.!!$F1 2507
3 TraesCS3B01G602000 chr6B 245153522 245154105 583 False 976.000000 976 96.918000 1178 1758 1 chr6B.!!$F2 580
4 TraesCS3B01G602000 chr4B 656779371 656779954 583 False 970.000000 970 96.747000 1178 1758 1 chr4B.!!$F1 580
5 TraesCS3B01G602000 chr1B 128087448 128088031 583 False 948.000000 948 96.062000 1178 1758 1 chr1B.!!$F1 580
6 TraesCS3B01G602000 chr1B 71569633 71570209 576 True 881.000000 881 94.188000 1178 1758 1 chr1B.!!$R1 580
7 TraesCS3B01G602000 chr1B 679233779 679234284 505 True 481.000000 481 83.953000 222 727 1 chr1B.!!$R2 505
8 TraesCS3B01G602000 chr5D 50502023 50504295 2272 True 531.000000 795 88.211500 998 2848 2 chr5D.!!$R1 1850
9 TraesCS3B01G602000 chr5A 39853848 39856269 2421 True 516.000000 760 87.794500 998 2927 2 chr5A.!!$R1 1929
10 TraesCS3B01G602000 chr5B 53255251 53257560 2309 True 380.000000 457 87.278333 998 2855 3 chr5B.!!$R1 1857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1015 0.033991 TCGTGGGGAGAGGAGAAGAG 60.034 60.0 0.00 0.00 0.00 2.85 F
1176 1207 0.108520 ACAGGGTACGTACGCCATTG 60.109 55.0 31.86 26.18 39.67 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2608 4117 1.012841 GCAGATGACTTGGTGCTAGC 58.987 55.0 8.1 8.1 32.97 3.42 R
3171 4819 0.517316 CTCTTTTCCGTCAAAGCCCG 59.483 55.0 0.0 0.0 34.26 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.639135 GCTGGGTGAGGAATTAAATGAC 57.361 45.455 0.00 0.00 0.00 3.06
22 23 4.016444 GCTGGGTGAGGAATTAAATGACA 58.984 43.478 0.00 0.00 0.00 3.58
23 24 4.462483 GCTGGGTGAGGAATTAAATGACAA 59.538 41.667 0.00 0.00 0.00 3.18
24 25 5.047377 GCTGGGTGAGGAATTAAATGACAAA 60.047 40.000 0.00 0.00 0.00 2.83
25 26 6.518200 GCTGGGTGAGGAATTAAATGACAAAA 60.518 38.462 0.00 0.00 0.00 2.44
26 27 6.991938 TGGGTGAGGAATTAAATGACAAAAG 58.008 36.000 0.00 0.00 0.00 2.27
27 28 6.014669 TGGGTGAGGAATTAAATGACAAAAGG 60.015 38.462 0.00 0.00 0.00 3.11
28 29 5.869344 GGTGAGGAATTAAATGACAAAAGGC 59.131 40.000 0.00 0.00 0.00 4.35
29 30 6.454795 GTGAGGAATTAAATGACAAAAGGCA 58.545 36.000 0.00 0.00 0.00 4.75
30 31 6.928492 GTGAGGAATTAAATGACAAAAGGCAA 59.072 34.615 0.00 0.00 0.00 4.52
31 32 7.440856 GTGAGGAATTAAATGACAAAAGGCAAA 59.559 33.333 0.00 0.00 0.00 3.68
32 33 7.989741 TGAGGAATTAAATGACAAAAGGCAAAA 59.010 29.630 0.00 0.00 0.00 2.44
33 34 8.382030 AGGAATTAAATGACAAAAGGCAAAAG 57.618 30.769 0.00 0.00 0.00 2.27
34 35 8.210265 AGGAATTAAATGACAAAAGGCAAAAGA 58.790 29.630 0.00 0.00 0.00 2.52
35 36 8.835439 GGAATTAAATGACAAAAGGCAAAAGAA 58.165 29.630 0.00 0.00 0.00 2.52
39 40 9.823647 TTAAATGACAAAAGGCAAAAGAATACA 57.176 25.926 0.00 0.00 0.00 2.29
40 41 8.907222 AAATGACAAAAGGCAAAAGAATACAT 57.093 26.923 0.00 0.00 0.00 2.29
41 42 7.894376 ATGACAAAAGGCAAAAGAATACATG 57.106 32.000 0.00 0.00 0.00 3.21
42 43 7.048629 TGACAAAAGGCAAAAGAATACATGA 57.951 32.000 0.00 0.00 0.00 3.07
43 44 7.147312 TGACAAAAGGCAAAAGAATACATGAG 58.853 34.615 0.00 0.00 0.00 2.90
44 45 7.054491 ACAAAAGGCAAAAGAATACATGAGT 57.946 32.000 0.00 0.00 0.00 3.41
45 46 8.177119 ACAAAAGGCAAAAGAATACATGAGTA 57.823 30.769 0.00 0.00 34.10 2.59
46 47 8.637986 ACAAAAGGCAAAAGAATACATGAGTAA 58.362 29.630 0.00 0.00 33.13 2.24
47 48 9.643693 CAAAAGGCAAAAGAATACATGAGTAAT 57.356 29.630 0.00 0.00 33.13 1.89
48 49 9.643693 AAAAGGCAAAAGAATACATGAGTAATG 57.356 29.630 0.00 0.00 42.48 1.90
68 69 9.740710 AGTAATGTCTATCCAATATTTAAGGCC 57.259 33.333 0.00 0.00 0.00 5.19
69 70 9.740710 GTAATGTCTATCCAATATTTAAGGCCT 57.259 33.333 0.00 0.00 0.00 5.19
71 72 9.660544 AATGTCTATCCAATATTTAAGGCCTTT 57.339 29.630 26.08 8.58 0.00 3.11
99 100 7.859325 TTTCTACTACAAAATAGGCATGACC 57.141 36.000 0.00 0.00 39.61 4.02
100 101 6.553953 TCTACTACAAAATAGGCATGACCA 57.446 37.500 0.00 0.00 43.14 4.02
101 102 7.136822 TCTACTACAAAATAGGCATGACCAT 57.863 36.000 0.00 0.00 43.14 3.55
102 103 7.573710 TCTACTACAAAATAGGCATGACCATT 58.426 34.615 0.00 0.00 43.14 3.16
103 104 6.699575 ACTACAAAATAGGCATGACCATTC 57.300 37.500 0.00 0.00 43.14 2.67
104 105 6.186957 ACTACAAAATAGGCATGACCATTCA 58.813 36.000 0.00 0.00 43.14 2.57
105 106 5.999205 ACAAAATAGGCATGACCATTCAA 57.001 34.783 0.00 0.00 43.14 2.69
106 107 6.357579 ACAAAATAGGCATGACCATTCAAA 57.642 33.333 0.00 0.00 43.14 2.69
107 108 6.767456 ACAAAATAGGCATGACCATTCAAAA 58.233 32.000 0.00 0.00 43.14 2.44
108 109 7.222872 ACAAAATAGGCATGACCATTCAAAAA 58.777 30.769 0.00 0.00 43.14 1.94
129 130 6.849588 AAAATGGAGTCATCTTTTTGTTGC 57.150 33.333 0.00 0.00 32.24 4.17
130 131 4.525912 ATGGAGTCATCTTTTTGTTGCC 57.474 40.909 0.00 0.00 0.00 4.52
131 132 2.293122 TGGAGTCATCTTTTTGTTGCCG 59.707 45.455 0.00 0.00 0.00 5.69
132 133 2.351738 GGAGTCATCTTTTTGTTGCCGG 60.352 50.000 0.00 0.00 0.00 6.13
133 134 2.293399 GAGTCATCTTTTTGTTGCCGGT 59.707 45.455 1.90 0.00 0.00 5.28
134 135 2.034558 AGTCATCTTTTTGTTGCCGGTG 59.965 45.455 1.90 0.00 0.00 4.94
135 136 2.034053 GTCATCTTTTTGTTGCCGGTGA 59.966 45.455 1.90 0.00 0.00 4.02
136 137 2.034053 TCATCTTTTTGTTGCCGGTGAC 59.966 45.455 1.90 2.45 0.00 3.67
137 138 1.464734 TCTTTTTGTTGCCGGTGACA 58.535 45.000 1.90 5.53 0.00 3.58
138 139 2.028130 TCTTTTTGTTGCCGGTGACAT 58.972 42.857 11.90 0.00 0.00 3.06
139 140 2.428890 TCTTTTTGTTGCCGGTGACATT 59.571 40.909 11.90 0.00 0.00 2.71
140 141 3.632604 TCTTTTTGTTGCCGGTGACATTA 59.367 39.130 11.90 2.76 0.00 1.90
141 142 4.098044 TCTTTTTGTTGCCGGTGACATTAA 59.902 37.500 11.90 7.69 0.00 1.40
142 143 4.592485 TTTTGTTGCCGGTGACATTAAT 57.408 36.364 11.90 0.00 0.00 1.40
143 144 5.707242 TTTTGTTGCCGGTGACATTAATA 57.293 34.783 11.90 0.00 0.00 0.98
144 145 5.707242 TTTGTTGCCGGTGACATTAATAA 57.293 34.783 11.90 2.16 0.00 1.40
145 146 5.707242 TTGTTGCCGGTGACATTAATAAA 57.293 34.783 11.90 0.00 0.00 1.40
146 147 5.707242 TGTTGCCGGTGACATTAATAAAA 57.293 34.783 1.90 0.00 0.00 1.52
147 148 5.462405 TGTTGCCGGTGACATTAATAAAAC 58.538 37.500 1.90 0.00 0.00 2.43
148 149 5.009710 TGTTGCCGGTGACATTAATAAAACA 59.990 36.000 1.90 0.00 0.00 2.83
149 150 5.906113 TGCCGGTGACATTAATAAAACAT 57.094 34.783 1.90 0.00 0.00 2.71
150 151 5.645624 TGCCGGTGACATTAATAAAACATG 58.354 37.500 1.90 0.00 0.00 3.21
151 152 4.502645 GCCGGTGACATTAATAAAACATGC 59.497 41.667 1.90 0.00 0.00 4.06
152 153 5.678616 GCCGGTGACATTAATAAAACATGCT 60.679 40.000 1.90 0.00 0.00 3.79
153 154 6.329496 CCGGTGACATTAATAAAACATGCTT 58.671 36.000 0.00 0.00 0.00 3.91
154 155 6.811170 CCGGTGACATTAATAAAACATGCTTT 59.189 34.615 0.00 0.00 0.00 3.51
155 156 7.330700 CCGGTGACATTAATAAAACATGCTTTT 59.669 33.333 0.00 5.51 0.00 2.27
156 157 8.707839 CGGTGACATTAATAAAACATGCTTTTT 58.292 29.630 0.00 0.00 33.27 1.94
188 189 7.582667 AAAATTGTCTAGCCACTTTAACAGT 57.417 32.000 0.00 0.00 35.35 3.55
189 190 8.685838 AAAATTGTCTAGCCACTTTAACAGTA 57.314 30.769 0.00 0.00 32.76 2.74
190 191 8.685838 AAATTGTCTAGCCACTTTAACAGTAA 57.314 30.769 0.00 0.00 32.76 2.24
191 192 8.685838 AATTGTCTAGCCACTTTAACAGTAAA 57.314 30.769 0.00 0.00 32.76 2.01
192 193 7.486802 TTGTCTAGCCACTTTAACAGTAAAC 57.513 36.000 0.00 0.00 32.76 2.01
193 194 6.584488 TGTCTAGCCACTTTAACAGTAAACA 58.416 36.000 0.00 0.00 32.76 2.83
194 195 6.480981 TGTCTAGCCACTTTAACAGTAAACAC 59.519 38.462 0.00 0.00 32.76 3.32
195 196 5.993441 TCTAGCCACTTTAACAGTAAACACC 59.007 40.000 0.00 0.00 32.76 4.16
196 197 4.528920 AGCCACTTTAACAGTAAACACCA 58.471 39.130 0.00 0.00 32.76 4.17
197 198 5.137551 AGCCACTTTAACAGTAAACACCAT 58.862 37.500 0.00 0.00 32.76 3.55
198 199 5.596772 AGCCACTTTAACAGTAAACACCATT 59.403 36.000 0.00 0.00 32.76 3.16
199 200 5.689961 GCCACTTTAACAGTAAACACCATTG 59.310 40.000 0.00 0.00 32.76 2.82
200 201 6.681865 GCCACTTTAACAGTAAACACCATTGT 60.682 38.462 0.00 0.00 33.14 2.71
201 202 6.695278 CCACTTTAACAGTAAACACCATTGTG 59.305 38.462 0.00 0.00 40.47 3.33
202 203 6.198216 CACTTTAACAGTAAACACCATTGTGC 59.802 38.462 0.00 0.00 39.14 4.57
203 204 5.836821 TTAACAGTAAACACCATTGTGCA 57.163 34.783 0.00 0.00 46.86 4.57
204 205 4.935352 AACAGTAAACACCATTGTGCAT 57.065 36.364 0.00 0.00 46.86 3.96
205 206 4.935352 ACAGTAAACACCATTGTGCATT 57.065 36.364 0.00 0.00 46.86 3.56
206 207 4.619973 ACAGTAAACACCATTGTGCATTG 58.380 39.130 0.00 0.00 46.86 2.82
207 208 4.340666 ACAGTAAACACCATTGTGCATTGA 59.659 37.500 0.00 0.00 46.86 2.57
208 209 5.163468 ACAGTAAACACCATTGTGCATTGAA 60.163 36.000 0.00 0.00 46.86 2.69
209 210 5.752472 CAGTAAACACCATTGTGCATTGAAA 59.248 36.000 0.00 0.00 46.86 2.69
210 211 6.424509 CAGTAAACACCATTGTGCATTGAAAT 59.575 34.615 0.00 0.00 46.86 2.17
211 212 6.991531 AGTAAACACCATTGTGCATTGAAATT 59.008 30.769 0.00 0.00 46.86 1.82
212 213 5.927954 AACACCATTGTGCATTGAAATTC 57.072 34.783 0.00 0.00 46.86 2.17
213 214 4.958509 ACACCATTGTGCATTGAAATTCA 58.041 34.783 0.00 0.00 46.86 2.57
214 215 5.366460 ACACCATTGTGCATTGAAATTCAA 58.634 33.333 11.10 11.10 46.86 2.69
215 216 5.998981 ACACCATTGTGCATTGAAATTCAAT 59.001 32.000 14.86 14.86 45.12 2.57
216 217 6.487331 ACACCATTGTGCATTGAAATTCAATT 59.513 30.769 17.65 0.85 44.00 2.32
217 218 6.799441 CACCATTGTGCATTGAAATTCAATTG 59.201 34.615 17.65 12.28 38.57 2.32
218 219 6.711194 ACCATTGTGCATTGAAATTCAATTGA 59.289 30.769 17.65 3.38 44.03 2.57
219 220 7.018826 CCATTGTGCATTGAAATTCAATTGAC 58.981 34.615 17.65 16.12 44.03 3.18
220 221 7.094975 CCATTGTGCATTGAAATTCAATTGACT 60.095 33.333 17.65 0.00 44.03 3.41
236 237 4.931661 TTGACTGACTTCGGTAAAGAGT 57.068 40.909 0.00 0.00 38.44 3.24
245 246 4.452455 ACTTCGGTAAAGAGTCTGCAATTG 59.548 41.667 0.00 0.00 38.44 2.32
259 260 1.522668 CAATTGGACTGGAGCAACGA 58.477 50.000 0.00 0.00 0.00 3.85
261 262 1.742761 ATTGGACTGGAGCAACGATG 58.257 50.000 0.00 0.00 0.00 3.84
265 266 0.166814 GACTGGAGCAACGATGTTGC 59.833 55.000 23.22 23.22 45.22 4.17
274 275 2.543653 GCAACGATGTTGCCACTCTTTT 60.544 45.455 20.85 0.00 39.38 2.27
321 322 5.591099 TGATTTTTGAAAGTGCCTTGAGTC 58.409 37.500 0.00 0.00 0.00 3.36
322 323 5.126869 TGATTTTTGAAAGTGCCTTGAGTCA 59.873 36.000 0.00 0.00 0.00 3.41
328 329 0.037303 AGTGCCTTGAGTCACCCATG 59.963 55.000 0.00 0.00 33.90 3.66
329 330 0.962356 GTGCCTTGAGTCACCCATGG 60.962 60.000 4.14 4.14 33.45 3.66
333 335 2.875296 CCTTGAGTCACCCATGGAAAA 58.125 47.619 15.22 0.00 32.40 2.29
335 337 3.834231 CCTTGAGTCACCCATGGAAAAAT 59.166 43.478 15.22 0.00 32.40 1.82
351 353 5.725822 TGGAAAAATATGGGAAGCCTTGATT 59.274 36.000 0.00 0.00 0.00 2.57
359 361 3.091545 GGGAAGCCTTGATTGATGAACA 58.908 45.455 0.00 0.00 0.00 3.18
360 362 3.119352 GGGAAGCCTTGATTGATGAACAC 60.119 47.826 0.00 0.00 0.00 3.32
366 368 4.801891 CCTTGATTGATGAACACACTTGG 58.198 43.478 0.00 0.00 0.00 3.61
367 369 3.921119 TGATTGATGAACACACTTGGC 57.079 42.857 0.00 0.00 0.00 4.52
368 370 2.557924 TGATTGATGAACACACTTGGCC 59.442 45.455 0.00 0.00 0.00 5.36
371 373 0.605319 GATGAACACACTTGGCCCGA 60.605 55.000 0.00 0.00 0.00 5.14
379 381 0.533755 CACTTGGCCCGAGGATGATC 60.534 60.000 0.00 0.00 0.00 2.92
380 382 0.692419 ACTTGGCCCGAGGATGATCT 60.692 55.000 0.00 0.00 0.00 2.75
382 384 0.399091 TTGGCCCGAGGATGATCTCT 60.399 55.000 0.00 0.00 0.00 3.10
394 396 5.207354 AGGATGATCTCTTAGAAGTGCAGA 58.793 41.667 0.00 0.00 0.00 4.26
395 397 5.840149 AGGATGATCTCTTAGAAGTGCAGAT 59.160 40.000 0.00 0.00 0.00 2.90
396 398 6.327104 AGGATGATCTCTTAGAAGTGCAGATT 59.673 38.462 0.00 0.00 0.00 2.40
399 401 6.104665 TGATCTCTTAGAAGTGCAGATTGTG 58.895 40.000 0.00 0.00 0.00 3.33
408 410 3.759581 AGTGCAGATTGTGGAATCACTT 58.240 40.909 0.00 0.00 43.94 3.16
421 423 7.629157 TGTGGAATCACTTTATCTTCACCATA 58.371 34.615 0.00 0.00 43.94 2.74
426 428 9.167311 GAATCACTTTATCTTCACCATAGTGTT 57.833 33.333 0.00 0.00 44.83 3.32
434 436 7.621428 ATCTTCACCATAGTGTTGATGAAAG 57.379 36.000 0.00 0.00 44.83 2.62
460 462 7.831691 TTTCACCTCCATAAAGAATCAAACA 57.168 32.000 0.00 0.00 0.00 2.83
463 465 8.421249 TCACCTCCATAAAGAATCAAACAAAT 57.579 30.769 0.00 0.00 0.00 2.32
493 495 6.524101 AACTGGACACAACAACATAAACTT 57.476 33.333 0.00 0.00 0.00 2.66
548 552 5.690464 AAACTCTCTAATCTCATGGCACT 57.310 39.130 0.00 0.00 0.00 4.40
549 553 6.798427 AAACTCTCTAATCTCATGGCACTA 57.202 37.500 0.00 0.00 0.00 2.74
566 570 3.055819 GCACTACCACAAGAATGAGAGGA 60.056 47.826 0.00 0.00 0.00 3.71
570 574 6.314896 CACTACCACAAGAATGAGAGGAAATC 59.685 42.308 0.00 0.00 0.00 2.17
578 582 8.766476 ACAAGAATGAGAGGAAATCTATTCTCA 58.234 33.333 5.61 5.61 46.98 3.27
600 604 8.971073 TCTCACAAAACTATGATGATCACTAGA 58.029 33.333 14.51 0.00 0.00 2.43
614 618 4.761235 TCACTAGACGTTGACGAAGAAT 57.239 40.909 10.87 0.00 43.02 2.40
616 620 6.245115 TCACTAGACGTTGACGAAGAATAA 57.755 37.500 10.87 0.00 43.02 1.40
637 641 2.383855 AGAGGTCTTGAAGATCCGAGG 58.616 52.381 1.04 0.00 0.00 4.63
665 669 3.074369 TCGGAGCGCCAAGATGGA 61.074 61.111 7.44 0.00 40.96 3.41
668 672 2.476320 GGAGCGCCAAGATGGAAGC 61.476 63.158 2.29 4.98 40.96 3.86
669 673 2.439156 AGCGCCAAGATGGAAGCC 60.439 61.111 2.29 0.00 40.96 4.35
670 674 3.880846 GCGCCAAGATGGAAGCCG 61.881 66.667 0.00 0.00 40.96 5.52
698 702 4.702831 GAGGGAGCCTAAATTTCTCAGAG 58.297 47.826 0.00 0.00 31.76 3.35
699 703 4.366267 AGGGAGCCTAAATTTCTCAGAGA 58.634 43.478 0.00 0.00 28.47 3.10
701 705 4.163268 GGGAGCCTAAATTTCTCAGAGAGT 59.837 45.833 0.00 0.00 0.00 3.24
704 708 4.080638 AGCCTAAATTTCTCAGAGAGTGGG 60.081 45.833 0.00 1.10 0.00 4.61
706 710 3.728385 AAATTTCTCAGAGAGTGGGGG 57.272 47.619 0.00 0.00 0.00 5.40
709 713 3.465403 CTCAGAGAGTGGGGGCGG 61.465 72.222 0.00 0.00 0.00 6.13
729 733 4.148825 GCGACGGCACCAGAGGAT 62.149 66.667 0.00 0.00 39.62 3.24
730 734 2.782222 GCGACGGCACCAGAGGATA 61.782 63.158 0.00 0.00 39.62 2.59
731 735 1.065928 CGACGGCACCAGAGGATAC 59.934 63.158 0.00 0.00 0.00 2.24
732 736 1.663379 CGACGGCACCAGAGGATACA 61.663 60.000 0.00 0.00 41.41 2.29
733 737 0.179108 GACGGCACCAGAGGATACAC 60.179 60.000 0.00 0.00 41.41 2.90
734 738 0.614979 ACGGCACCAGAGGATACACT 60.615 55.000 0.00 0.00 38.40 3.55
735 739 0.537188 CGGCACCAGAGGATACACTT 59.463 55.000 0.00 0.00 34.16 3.16
736 740 1.740380 CGGCACCAGAGGATACACTTG 60.740 57.143 0.00 0.00 34.16 3.16
737 741 1.555075 GGCACCAGAGGATACACTTGA 59.445 52.381 0.00 0.00 34.16 3.02
738 742 2.027192 GGCACCAGAGGATACACTTGAA 60.027 50.000 0.00 0.00 34.16 2.69
739 743 3.370953 GGCACCAGAGGATACACTTGAAT 60.371 47.826 0.00 0.00 34.16 2.57
740 744 4.265073 GCACCAGAGGATACACTTGAATT 58.735 43.478 0.00 0.00 34.16 2.17
741 745 4.702131 GCACCAGAGGATACACTTGAATTT 59.298 41.667 0.00 0.00 34.16 1.82
742 746 5.183904 GCACCAGAGGATACACTTGAATTTT 59.816 40.000 0.00 0.00 34.16 1.82
743 747 6.294731 GCACCAGAGGATACACTTGAATTTTT 60.295 38.462 0.00 0.00 34.16 1.94
775 779 6.720012 TTTTGTTGAGAAAAACTTGAAGGC 57.280 33.333 0.00 0.00 0.00 4.35
776 780 5.659440 TTGTTGAGAAAAACTTGAAGGCT 57.341 34.783 0.00 0.00 0.00 4.58
777 781 5.248870 TGTTGAGAAAAACTTGAAGGCTC 57.751 39.130 0.00 0.00 0.00 4.70
778 782 4.704540 TGTTGAGAAAAACTTGAAGGCTCA 59.295 37.500 0.00 0.00 0.00 4.26
779 783 5.360714 TGTTGAGAAAAACTTGAAGGCTCAT 59.639 36.000 0.00 0.00 31.80 2.90
780 784 5.695851 TGAGAAAAACTTGAAGGCTCATC 57.304 39.130 0.00 0.00 0.00 2.92
781 785 5.380043 TGAGAAAAACTTGAAGGCTCATCT 58.620 37.500 0.00 0.00 0.00 2.90
782 786 5.240183 TGAGAAAAACTTGAAGGCTCATCTG 59.760 40.000 0.00 0.00 0.00 2.90
783 787 4.522022 AGAAAAACTTGAAGGCTCATCTGG 59.478 41.667 0.00 0.00 0.00 3.86
784 788 1.831580 AACTTGAAGGCTCATCTGGC 58.168 50.000 0.00 0.00 0.00 4.85
790 794 2.356278 GGCTCATCTGGCCCACAA 59.644 61.111 0.00 0.00 43.49 3.33
791 795 2.048603 GGCTCATCTGGCCCACAAC 61.049 63.158 0.00 0.00 43.49 3.32
792 796 1.303561 GCTCATCTGGCCCACAACA 60.304 57.895 0.00 0.00 0.00 3.33
793 797 0.895100 GCTCATCTGGCCCACAACAA 60.895 55.000 0.00 0.00 0.00 2.83
794 798 1.843368 CTCATCTGGCCCACAACAAT 58.157 50.000 0.00 0.00 0.00 2.71
795 799 2.945440 GCTCATCTGGCCCACAACAATA 60.945 50.000 0.00 0.00 0.00 1.90
796 800 2.947652 CTCATCTGGCCCACAACAATAG 59.052 50.000 0.00 0.00 0.00 1.73
797 801 1.406539 CATCTGGCCCACAACAATAGC 59.593 52.381 0.00 0.00 0.00 2.97
798 802 0.403655 TCTGGCCCACAACAATAGCA 59.596 50.000 0.00 0.00 0.00 3.49
799 803 0.527565 CTGGCCCACAACAATAGCAC 59.472 55.000 0.00 0.00 0.00 4.40
800 804 1.240641 TGGCCCACAACAATAGCACG 61.241 55.000 0.00 0.00 0.00 5.34
801 805 1.154035 GCCCACAACAATAGCACGC 60.154 57.895 0.00 0.00 0.00 5.34
802 806 1.134487 CCCACAACAATAGCACGCG 59.866 57.895 3.53 3.53 0.00 6.01
803 807 1.511887 CCACAACAATAGCACGCGC 60.512 57.895 5.73 0.00 38.99 6.86
804 808 1.511887 CACAACAATAGCACGCGCC 60.512 57.895 5.73 0.00 39.83 6.53
805 809 2.100216 CAACAATAGCACGCGCCC 59.900 61.111 5.73 0.00 39.83 6.13
806 810 3.131478 AACAATAGCACGCGCCCC 61.131 61.111 5.73 0.00 39.83 5.80
807 811 3.910914 AACAATAGCACGCGCCCCA 62.911 57.895 5.73 0.00 39.83 4.96
808 812 3.130819 CAATAGCACGCGCCCCAA 61.131 61.111 5.73 0.00 39.83 4.12
809 813 3.131478 AATAGCACGCGCCCCAAC 61.131 61.111 5.73 0.00 39.83 3.77
810 814 3.622060 AATAGCACGCGCCCCAACT 62.622 57.895 5.73 0.00 39.83 3.16
832 836 3.699894 CAGCGTGGGCCTCTGAGT 61.700 66.667 4.53 0.00 41.24 3.41
834 838 2.055042 AGCGTGGGCCTCTGAGTAG 61.055 63.158 4.53 0.00 41.24 2.57
981 1012 1.677966 CGTCGTGGGGAGAGGAGAA 60.678 63.158 0.00 0.00 0.00 2.87
982 1013 1.658686 CGTCGTGGGGAGAGGAGAAG 61.659 65.000 0.00 0.00 0.00 2.85
983 1014 0.323542 GTCGTGGGGAGAGGAGAAGA 60.324 60.000 0.00 0.00 0.00 2.87
984 1015 0.033991 TCGTGGGGAGAGGAGAAGAG 60.034 60.000 0.00 0.00 0.00 2.85
985 1016 0.033991 CGTGGGGAGAGGAGAAGAGA 60.034 60.000 0.00 0.00 0.00 3.10
986 1017 1.617263 CGTGGGGAGAGGAGAAGAGAA 60.617 57.143 0.00 0.00 0.00 2.87
1173 1204 2.689785 CGACAGGGTACGTACGCCA 61.690 63.158 31.86 0.00 39.67 5.69
1174 1205 1.811860 GACAGGGTACGTACGCCAT 59.188 57.895 31.86 22.95 39.67 4.40
1176 1207 0.108520 ACAGGGTACGTACGCCATTG 60.109 55.000 31.86 26.18 39.67 2.82
1178 1209 0.174162 AGGGTACGTACGCCATTGAC 59.826 55.000 31.86 11.57 39.67 3.18
1179 1210 0.807275 GGGTACGTACGCCATTGACC 60.807 60.000 27.29 13.34 33.54 4.02
1180 1211 0.807275 GGTACGTACGCCATTGACCC 60.807 60.000 16.72 0.00 0.00 4.46
1181 1212 0.807275 GTACGTACGCCATTGACCCC 60.807 60.000 16.72 0.00 0.00 4.95
1182 1213 0.971959 TACGTACGCCATTGACCCCT 60.972 55.000 16.72 0.00 0.00 4.79
1233 1276 2.442413 CCTTTGGTGGAGCGGATTTTA 58.558 47.619 0.00 0.00 0.00 1.52
1269 1312 3.763897 CTCCAAATCGAAACCCATTTCCT 59.236 43.478 0.00 0.00 41.12 3.36
1438 1589 2.158900 AGGTTTGTGGTCTGTCTGTCTG 60.159 50.000 0.00 0.00 0.00 3.51
1656 2181 4.065088 TGAGAAATTTTGAGGTCTGTCCG 58.935 43.478 0.00 0.00 41.99 4.79
1735 3195 3.460362 CATGGTCTTGAACATGTCACG 57.540 47.619 17.71 0.00 39.59 4.35
1779 3239 5.445407 CGTTTCCACAATACGTCAACCTATG 60.445 44.000 0.00 0.00 0.00 2.23
1797 3257 3.634397 ATGATATTATCACCGGGCTGG 57.366 47.619 11.83 11.83 43.01 4.85
1818 3278 8.046107 GGCTGGAGCTATCTAGATATTTTTCAT 58.954 37.037 12.86 0.00 41.70 2.57
2004 3479 6.879458 TCTTTAGAGTAAACAATCTTGCCTCC 59.121 38.462 0.00 0.00 0.00 4.30
2008 3483 5.045286 AGAGTAAACAATCTTGCCTCCTGAT 60.045 40.000 0.00 0.00 0.00 2.90
2048 3523 5.973565 GCTTGTTGTTATAGCAATGGTGATC 59.026 40.000 5.24 0.00 35.05 2.92
2204 3692 5.897050 ACAAAATTTTGCTTTCAGTACCGA 58.103 33.333 26.94 0.00 41.79 4.69
2205 3693 5.977129 ACAAAATTTTGCTTTCAGTACCGAG 59.023 36.000 26.94 2.11 41.79 4.63
2206 3694 6.183360 ACAAAATTTTGCTTTCAGTACCGAGA 60.183 34.615 26.94 0.00 41.79 4.04
2207 3695 5.613358 AATTTTGCTTTCAGTACCGAGAG 57.387 39.130 0.00 0.00 0.00 3.20
2208 3696 4.330944 TTTTGCTTTCAGTACCGAGAGA 57.669 40.909 0.92 0.00 0.00 3.10
2209 3697 3.577649 TTGCTTTCAGTACCGAGAGAG 57.422 47.619 0.92 0.00 0.00 3.20
2210 3698 2.791655 TGCTTTCAGTACCGAGAGAGA 58.208 47.619 0.92 0.00 0.00 3.10
2279 3776 8.165239 AGCTTGTGTGACTGTGAATATAAAAA 57.835 30.769 0.00 0.00 0.00 1.94
2323 3820 5.865013 TGAATAGATTAACGAGTTTGCGTCA 59.135 36.000 0.00 0.00 44.86 4.35
2336 3833 1.674359 TGCGTCATTTTGTCCTGTGT 58.326 45.000 0.00 0.00 0.00 3.72
2352 3849 8.642908 TGTCCTGTGTTGTATTCTATTTATCG 57.357 34.615 0.00 0.00 0.00 2.92
2366 3863 8.882415 TTCTATTTATCGGCTTACTTTACTGG 57.118 34.615 0.00 0.00 0.00 4.00
2367 3864 8.241497 TCTATTTATCGGCTTACTTTACTGGA 57.759 34.615 0.00 0.00 0.00 3.86
2368 3865 8.358148 TCTATTTATCGGCTTACTTTACTGGAG 58.642 37.037 0.00 0.00 0.00 3.86
2369 3866 6.534475 TTTATCGGCTTACTTTACTGGAGA 57.466 37.500 0.00 0.00 0.00 3.71
2370 3867 3.863142 TCGGCTTACTTTACTGGAGAC 57.137 47.619 0.00 0.00 0.00 3.36
2371 3868 3.428532 TCGGCTTACTTTACTGGAGACT 58.571 45.455 0.00 0.00 0.00 3.24
2393 3890 3.287222 AGGCTAGTGTTCTTTTTGCACA 58.713 40.909 0.00 0.00 35.75 4.57
2394 3891 3.891366 AGGCTAGTGTTCTTTTTGCACAT 59.109 39.130 0.00 0.00 35.75 3.21
2407 3908 6.424509 TCTTTTTGCACATTGATTCATTCACC 59.575 34.615 0.00 0.00 32.84 4.02
2608 4117 3.466836 TCTGGTGCTACAACTCAACAAG 58.533 45.455 0.00 0.00 28.44 3.16
2632 4141 1.883638 GCACCAAGTCATCTGCCTGAA 60.884 52.381 0.00 0.00 0.00 3.02
2654 4163 0.326264 ATCCTCAGAGCCCAACACAC 59.674 55.000 0.00 0.00 0.00 3.82
2655 4164 1.669115 CCTCAGAGCCCAACACACG 60.669 63.158 0.00 0.00 0.00 4.49
2694 4218 3.465990 CAGCATGTCCGAGAACCAT 57.534 52.632 0.00 0.00 0.00 3.55
2695 4219 1.293924 CAGCATGTCCGAGAACCATC 58.706 55.000 0.00 0.00 0.00 3.51
2696 4220 1.134580 CAGCATGTCCGAGAACCATCT 60.135 52.381 0.00 0.00 39.10 2.90
2725 4258 4.214545 CACTGAATAAACAACGGCTGGTAA 59.785 41.667 0.00 0.00 0.00 2.85
2728 4261 5.764131 TGAATAAACAACGGCTGGTAAAAG 58.236 37.500 0.00 0.00 0.00 2.27
2731 4264 2.554370 ACAACGGCTGGTAAAAGCTA 57.446 45.000 0.00 0.00 43.06 3.32
2739 4273 3.190744 GGCTGGTAAAAGCTAGTGGTTTC 59.809 47.826 0.00 0.00 42.26 2.78
2740 4274 3.818773 GCTGGTAAAAGCTAGTGGTTTCA 59.181 43.478 0.00 0.00 42.26 2.69
2741 4275 4.277423 GCTGGTAAAAGCTAGTGGTTTCAA 59.723 41.667 0.00 0.00 42.26 2.69
2782 4316 7.656412 TCAGCTTATCAGTTTATTTGTTTGCA 58.344 30.769 0.00 0.00 0.00 4.08
2800 4334 2.890311 TGCAATCCGAAACTTGGTGATT 59.110 40.909 0.00 0.00 0.00 2.57
2823 4382 6.448369 TGGGAATTATGTTGGACCCTATAG 57.552 41.667 0.00 0.00 38.28 1.31
2903 4472 2.510411 CATACATGGAGGCGGCCA 59.490 61.111 23.09 0.00 43.23 5.36
2949 4566 1.202268 GCCGTTCGATAGCTAGTGTGT 60.202 52.381 0.00 0.00 0.00 3.72
2965 4582 0.038892 GTGTTCATTGTGGCTGCTGG 60.039 55.000 0.00 0.00 0.00 4.85
2966 4583 0.178995 TGTTCATTGTGGCTGCTGGA 60.179 50.000 0.00 0.00 0.00 3.86
2967 4584 1.180029 GTTCATTGTGGCTGCTGGAT 58.820 50.000 0.00 0.00 0.00 3.41
2968 4585 1.547372 GTTCATTGTGGCTGCTGGATT 59.453 47.619 0.00 0.00 0.00 3.01
2969 4586 2.754552 GTTCATTGTGGCTGCTGGATTA 59.245 45.455 0.00 0.00 0.00 1.75
2970 4587 3.301794 TCATTGTGGCTGCTGGATTAT 57.698 42.857 0.00 0.00 0.00 1.28
2974 4591 0.386838 GTGGCTGCTGGATTATTGCC 59.613 55.000 0.00 0.00 40.62 4.52
2987 4607 7.521423 GCTGGATTATTGCCGTGACATTAAATA 60.521 37.037 0.00 0.00 0.00 1.40
2988 4608 8.402798 TGGATTATTGCCGTGACATTAAATAT 57.597 30.769 0.00 0.00 0.00 1.28
2996 4616 5.926542 GCCGTGACATTAAATATCTAGCAGA 59.073 40.000 0.00 0.00 0.00 4.26
3016 4636 4.275443 CAGAAGAAGTTCAAGCTTGCTCTT 59.725 41.667 24.89 24.89 34.82 2.85
3017 4637 4.886489 AGAAGAAGTTCAAGCTTGCTCTTT 59.114 37.500 25.18 16.37 34.82 2.52
3018 4638 5.359292 AGAAGAAGTTCAAGCTTGCTCTTTT 59.641 36.000 25.18 20.30 34.82 2.27
3019 4639 4.929781 AGAAGTTCAAGCTTGCTCTTTTG 58.070 39.130 25.18 4.79 0.00 2.44
3020 4640 4.400567 AGAAGTTCAAGCTTGCTCTTTTGT 59.599 37.500 25.18 15.95 0.00 2.83
3021 4641 4.298744 AGTTCAAGCTTGCTCTTTTGTC 57.701 40.909 21.99 4.06 0.00 3.18
3032 4661 5.906113 TGCTCTTTTGTCCTTGTAAAACA 57.094 34.783 0.00 0.00 0.00 2.83
3052 4681 0.238817 TTTGTTGAATGTACCGCGCC 59.761 50.000 0.00 0.00 0.00 6.53
3053 4682 1.902716 TTGTTGAATGTACCGCGCCG 61.903 55.000 0.00 0.00 0.00 6.46
3054 4683 3.492545 TTGAATGTACCGCGCCGC 61.493 61.111 0.00 0.00 0.00 6.53
3055 4684 4.743975 TGAATGTACCGCGCCGCA 62.744 61.111 10.75 0.00 0.00 5.69
3081 4717 9.244292 ACTCGAATATATGCTCTTGGTTAGATA 57.756 33.333 0.00 0.00 30.92 1.98
3102 4740 1.500474 ATCATCGTGGTGTGATCCCT 58.500 50.000 0.00 0.00 29.36 4.20
3122 4760 3.572682 CCTGATCTTATGCGGGTGTACTA 59.427 47.826 0.00 0.00 0.00 1.82
3134 4782 5.813672 TGCGGGTGTACTAATCTGAATAAAC 59.186 40.000 0.00 0.00 0.00 2.01
3150 4798 1.919918 AAACATGTTGGTTGTGCACG 58.080 45.000 12.82 0.00 0.00 5.34
3151 4799 0.814457 AACATGTTGGTTGTGCACGT 59.186 45.000 11.07 0.00 0.00 4.49
3152 4800 0.814457 ACATGTTGGTTGTGCACGTT 59.186 45.000 13.13 0.00 0.00 3.99
3154 4802 0.527385 ATGTTGGTTGTGCACGTTGC 60.527 50.000 13.13 1.80 45.29 4.17
3171 4819 2.610219 TGCAACGTGTGATTATGTGC 57.390 45.000 0.00 0.00 0.00 4.57
3190 4838 0.517316 CGGGCTTTGACGGAAAAGAG 59.483 55.000 14.23 3.43 39.12 2.85
3203 4851 4.043073 CGGAAAAGAGGAGCTATTCGTAC 58.957 47.826 0.00 0.00 0.00 3.67
3206 4854 5.163540 GGAAAAGAGGAGCTATTCGTACTGA 60.164 44.000 0.00 0.00 0.00 3.41
3222 4871 7.591006 TCGTACTGAAAAATAGTTCATCACC 57.409 36.000 0.00 0.00 36.92 4.02
3256 4923 6.476706 GGAGAATTTGTTTGGAAGAACAGTTG 59.523 38.462 0.00 0.00 40.33 3.16
3263 4930 2.821546 TGGAAGAACAGTTGAGTCACG 58.178 47.619 0.00 0.00 0.00 4.35
3264 4931 1.527311 GGAAGAACAGTTGAGTCACGC 59.473 52.381 0.00 0.00 0.00 5.34
3267 4934 2.205074 AGAACAGTTGAGTCACGCTTG 58.795 47.619 0.00 0.00 0.00 4.01
3268 4935 0.657840 AACAGTTGAGTCACGCTTGC 59.342 50.000 0.00 0.00 0.00 4.01
3269 4936 0.461870 ACAGTTGAGTCACGCTTGCA 60.462 50.000 0.00 0.00 0.00 4.08
3280 4948 2.256591 CGCTTGCAGTGAGCCAACT 61.257 57.895 3.34 0.00 44.83 3.16
3288 4956 6.650807 GCTTGCAGTGAGCCAACTATTATATA 59.349 38.462 0.00 0.00 44.83 0.86
3289 4957 7.360438 GCTTGCAGTGAGCCAACTATTATATAC 60.360 40.741 0.00 0.00 44.83 1.47
3290 4958 7.061566 TGCAGTGAGCCAACTATTATATACA 57.938 36.000 0.00 0.00 44.83 2.29
3291 4959 7.154656 TGCAGTGAGCCAACTATTATATACAG 58.845 38.462 0.00 0.00 44.83 2.74
3292 4960 6.591834 GCAGTGAGCCAACTATTATATACAGG 59.408 42.308 0.00 0.00 37.23 4.00
3293 4961 7.525526 GCAGTGAGCCAACTATTATATACAGGA 60.526 40.741 0.00 0.00 37.23 3.86
3294 4962 8.031864 CAGTGAGCCAACTATTATATACAGGAG 58.968 40.741 0.00 0.00 0.00 3.69
3295 4963 7.730784 AGTGAGCCAACTATTATATACAGGAGT 59.269 37.037 0.00 0.00 0.00 3.85
3315 4983 5.067805 GGAGTATAATTTTCTGGTTGGGCTG 59.932 44.000 0.00 0.00 0.00 4.85
3328 4996 3.323691 GGTTGGGCTGTGAACCTAATTTT 59.676 43.478 0.00 0.00 38.91 1.82
3329 4997 4.556233 GTTGGGCTGTGAACCTAATTTTC 58.444 43.478 0.00 0.00 29.70 2.29
3330 4998 4.112634 TGGGCTGTGAACCTAATTTTCT 57.887 40.909 0.00 0.00 0.00 2.52
3331 4999 4.479158 TGGGCTGTGAACCTAATTTTCTT 58.521 39.130 0.00 0.00 0.00 2.52
3339 5007 5.863935 GTGAACCTAATTTTCTTCACATGGC 59.136 40.000 13.12 0.00 41.38 4.40
3348 5016 5.381174 TTTCTTCACATGGCATCTTTCTG 57.619 39.130 0.00 0.00 0.00 3.02
3355 5023 4.022589 CACATGGCATCTTTCTGTTCTTGT 60.023 41.667 0.00 0.00 0.00 3.16
3356 5024 4.022589 ACATGGCATCTTTCTGTTCTTGTG 60.023 41.667 0.00 0.00 0.00 3.33
3357 5025 2.886523 TGGCATCTTTCTGTTCTTGTGG 59.113 45.455 0.00 0.00 0.00 4.17
3358 5026 3.149196 GGCATCTTTCTGTTCTTGTGGA 58.851 45.455 0.00 0.00 0.00 4.02
3359 5027 3.760684 GGCATCTTTCTGTTCTTGTGGAT 59.239 43.478 0.00 0.00 0.00 3.41
3360 5028 4.142513 GGCATCTTTCTGTTCTTGTGGATC 60.143 45.833 0.00 0.00 0.00 3.36
3361 5029 4.456911 GCATCTTTCTGTTCTTGTGGATCA 59.543 41.667 0.00 0.00 0.00 2.92
3362 5030 5.391736 GCATCTTTCTGTTCTTGTGGATCAG 60.392 44.000 0.00 0.00 40.98 2.90
3363 5031 5.296151 TCTTTCTGTTCTTGTGGATCAGT 57.704 39.130 0.00 0.00 40.65 3.41
3366 5034 2.972021 TCTGTTCTTGTGGATCAGTGGA 59.028 45.455 0.00 0.00 40.65 4.02
3374 5042 8.562892 GTTCTTGTGGATCAGTGGATTATTATG 58.437 37.037 0.00 0.00 32.67 1.90
3376 5044 7.933577 TCTTGTGGATCAGTGGATTATTATGTC 59.066 37.037 0.00 0.00 32.67 3.06
3377 5045 6.533730 TGTGGATCAGTGGATTATTATGTCC 58.466 40.000 0.00 0.00 32.67 4.02
3384 5052 8.073467 TCAGTGGATTATTATGTCCGCATATA 57.927 34.615 12.28 0.00 45.30 0.86
3388 5056 9.758651 GTGGATTATTATGTCCGCATATATGTA 57.241 33.333 14.14 0.00 43.01 2.29
3393 5061 9.945904 TTATTATGTCCGCATATATGTAACCAA 57.054 29.630 14.14 7.40 37.42 3.67
3394 5062 7.661127 TTATGTCCGCATATATGTAACCAAC 57.339 36.000 14.14 5.52 37.42 3.77
3395 5063 5.024785 TGTCCGCATATATGTAACCAACA 57.975 39.130 14.14 7.68 43.86 3.33
3396 5064 5.429130 TGTCCGCATATATGTAACCAACAA 58.571 37.500 14.14 0.00 42.70 2.83
3397 5065 5.525745 TGTCCGCATATATGTAACCAACAAG 59.474 40.000 14.14 0.00 42.70 3.16
3398 5066 5.049680 GTCCGCATATATGTAACCAACAAGG 60.050 44.000 14.14 3.56 42.70 3.61
3400 5068 4.515191 CGCATATATGTAACCAACAAGGCT 59.485 41.667 14.14 0.00 42.70 4.58
3401 5069 5.334105 CGCATATATGTAACCAACAAGGCTC 60.334 44.000 14.14 0.00 42.70 4.70
3402 5070 5.765182 GCATATATGTAACCAACAAGGCTCT 59.235 40.000 14.14 0.00 42.70 4.09
3403 5071 6.293626 GCATATATGTAACCAACAAGGCTCTG 60.294 42.308 14.14 0.00 42.70 3.35
3405 5073 3.290948 TGTAACCAACAAGGCTCTGTT 57.709 42.857 8.59 8.59 43.14 3.16
3407 5075 4.131596 TGTAACCAACAAGGCTCTGTTAC 58.868 43.478 12.51 12.94 43.14 2.50
3408 5076 3.577805 AACCAACAAGGCTCTGTTACT 57.422 42.857 12.51 2.03 43.14 2.24
3409 5077 3.577805 ACCAACAAGGCTCTGTTACTT 57.422 42.857 12.51 0.00 43.14 2.24
3411 5079 3.883489 ACCAACAAGGCTCTGTTACTTTC 59.117 43.478 12.51 0.00 43.14 2.62
3412 5080 3.253432 CCAACAAGGCTCTGTTACTTTCC 59.747 47.826 12.51 0.00 37.43 3.13
3413 5081 3.141767 ACAAGGCTCTGTTACTTTCCC 57.858 47.619 0.00 0.00 0.00 3.97
3415 5083 3.244596 ACAAGGCTCTGTTACTTTCCCTC 60.245 47.826 0.00 0.00 0.00 4.30
3416 5084 2.621070 AGGCTCTGTTACTTTCCCTCA 58.379 47.619 0.00 0.00 0.00 3.86
3417 5085 2.979678 AGGCTCTGTTACTTTCCCTCAA 59.020 45.455 0.00 0.00 0.00 3.02
3418 5086 3.394606 AGGCTCTGTTACTTTCCCTCAAA 59.605 43.478 0.00 0.00 0.00 2.69
3419 5087 4.141251 AGGCTCTGTTACTTTCCCTCAAAA 60.141 41.667 0.00 0.00 0.00 2.44
3420 5088 4.583073 GGCTCTGTTACTTTCCCTCAAAAA 59.417 41.667 0.00 0.00 0.00 1.94
3442 5110 5.830000 AAAAACAAGGGTCTGTTACTGAC 57.170 39.130 12.93 12.93 38.59 3.51
3444 5112 4.338379 AACAAGGGTCTGTTACTGACTC 57.662 45.455 18.99 16.34 37.76 3.36
3445 5113 2.296471 ACAAGGGTCTGTTACTGACTCG 59.704 50.000 18.99 8.47 37.77 4.18
3448 5116 2.963782 AGGGTCTGTTACTGACTCGTTT 59.036 45.455 18.99 0.38 37.77 3.60
3449 5117 3.057734 GGGTCTGTTACTGACTCGTTTG 58.942 50.000 18.99 0.00 33.75 2.93
3451 5119 4.261741 GGGTCTGTTACTGACTCGTTTGTA 60.262 45.833 18.99 0.00 33.75 2.41
3452 5120 5.284079 GGTCTGTTACTGACTCGTTTGTAA 58.716 41.667 18.99 0.00 33.75 2.41
3453 5121 5.401674 GGTCTGTTACTGACTCGTTTGTAAG 59.598 44.000 18.99 0.00 33.75 2.34
3454 5122 5.401674 GTCTGTTACTGACTCGTTTGTAAGG 59.598 44.000 13.85 0.00 31.22 2.69
3456 5124 5.284079 TGTTACTGACTCGTTTGTAAGGTC 58.716 41.667 0.00 0.00 0.00 3.85
3458 5126 4.395959 ACTGACTCGTTTGTAAGGTCAA 57.604 40.909 0.00 0.00 36.65 3.18
3459 5127 4.761975 ACTGACTCGTTTGTAAGGTCAAA 58.238 39.130 0.00 0.00 36.65 2.69
3461 5129 5.236478 ACTGACTCGTTTGTAAGGTCAAATG 59.764 40.000 5.39 5.39 42.32 2.32
3462 5130 4.513692 TGACTCGTTTGTAAGGTCAAATGG 59.486 41.667 10.18 5.48 41.69 3.16
3464 5132 2.554893 TCGTTTGTAAGGTCAAATGGCC 59.445 45.455 0.00 0.00 41.69 5.36
3471 5139 3.577389 GGTCAAATGGCCTGCTAGT 57.423 52.632 3.32 0.00 36.72 2.57
3472 5140 1.839424 GGTCAAATGGCCTGCTAGTT 58.161 50.000 3.32 0.00 36.72 2.24
3473 5141 2.171003 GGTCAAATGGCCTGCTAGTTT 58.829 47.619 3.32 0.00 36.72 2.66
3474 5142 2.562738 GGTCAAATGGCCTGCTAGTTTT 59.437 45.455 3.32 0.00 36.72 2.43
3475 5143 3.578688 GTCAAATGGCCTGCTAGTTTTG 58.421 45.455 3.32 3.36 0.00 2.44
3476 5144 2.562298 TCAAATGGCCTGCTAGTTTTGG 59.438 45.455 3.32 0.00 0.00 3.28
3478 5146 2.603075 ATGGCCTGCTAGTTTTGGAA 57.397 45.000 3.32 0.00 0.00 3.53
3479 5147 1.909700 TGGCCTGCTAGTTTTGGAAG 58.090 50.000 3.32 0.00 0.00 3.46
3480 5148 0.528017 GGCCTGCTAGTTTTGGAAGC 59.472 55.000 0.00 0.00 36.77 3.86
3481 5149 1.539157 GCCTGCTAGTTTTGGAAGCT 58.461 50.000 0.00 0.00 37.16 3.74
3482 5150 2.618045 GGCCTGCTAGTTTTGGAAGCTA 60.618 50.000 0.00 0.00 37.16 3.32
3483 5151 3.282885 GCCTGCTAGTTTTGGAAGCTAT 58.717 45.455 0.00 0.00 37.16 2.97
3484 5152 3.065925 GCCTGCTAGTTTTGGAAGCTATG 59.934 47.826 0.00 0.00 37.16 2.23
3485 5153 4.517285 CCTGCTAGTTTTGGAAGCTATGA 58.483 43.478 0.00 0.00 37.16 2.15
3486 5154 4.574013 CCTGCTAGTTTTGGAAGCTATGAG 59.426 45.833 0.00 0.00 37.16 2.90
3487 5155 5.165961 TGCTAGTTTTGGAAGCTATGAGT 57.834 39.130 0.00 0.00 37.16 3.41
3488 5156 6.294361 TGCTAGTTTTGGAAGCTATGAGTA 57.706 37.500 0.00 0.00 37.16 2.59
3489 5157 6.341316 TGCTAGTTTTGGAAGCTATGAGTAG 58.659 40.000 0.00 0.00 37.16 2.57
3490 5158 6.154534 TGCTAGTTTTGGAAGCTATGAGTAGA 59.845 38.462 0.00 0.00 37.16 2.59
3491 5159 7.042335 GCTAGTTTTGGAAGCTATGAGTAGAA 58.958 38.462 0.00 0.00 33.40 2.10
3492 5160 7.549488 GCTAGTTTTGGAAGCTATGAGTAGAAA 59.451 37.037 0.00 0.00 33.40 2.52
3493 5161 9.436957 CTAGTTTTGGAAGCTATGAGTAGAAAA 57.563 33.333 0.00 0.00 0.00 2.29
3494 5162 8.100508 AGTTTTGGAAGCTATGAGTAGAAAAC 57.899 34.615 0.00 0.00 33.84 2.43
3495 5163 7.719633 AGTTTTGGAAGCTATGAGTAGAAAACA 59.280 33.333 0.00 0.00 34.89 2.83
3496 5164 7.435068 TTTGGAAGCTATGAGTAGAAAACAC 57.565 36.000 0.00 0.00 0.00 3.32
3497 5165 5.488341 TGGAAGCTATGAGTAGAAAACACC 58.512 41.667 0.00 0.00 0.00 4.16
3498 5166 5.012664 TGGAAGCTATGAGTAGAAAACACCA 59.987 40.000 0.00 0.00 0.00 4.17
3499 5167 5.582665 GGAAGCTATGAGTAGAAAACACCAG 59.417 44.000 0.00 0.00 0.00 4.00
3500 5168 6.360370 AAGCTATGAGTAGAAAACACCAGA 57.640 37.500 0.00 0.00 0.00 3.86
3501 5169 6.360370 AGCTATGAGTAGAAAACACCAGAA 57.640 37.500 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.016444 TGTCATTTAATTCCTCACCCAGC 58.984 43.478 0.00 0.00 0.00 4.85
1 2 6.588719 TTTGTCATTTAATTCCTCACCCAG 57.411 37.500 0.00 0.00 0.00 4.45
2 3 6.014669 CCTTTTGTCATTTAATTCCTCACCCA 60.015 38.462 0.00 0.00 0.00 4.51
3 4 6.398095 CCTTTTGTCATTTAATTCCTCACCC 58.602 40.000 0.00 0.00 0.00 4.61
4 5 5.869344 GCCTTTTGTCATTTAATTCCTCACC 59.131 40.000 0.00 0.00 0.00 4.02
5 6 6.454795 TGCCTTTTGTCATTTAATTCCTCAC 58.545 36.000 0.00 0.00 0.00 3.51
6 7 6.662865 TGCCTTTTGTCATTTAATTCCTCA 57.337 33.333 0.00 0.00 0.00 3.86
7 8 7.961325 TTTGCCTTTTGTCATTTAATTCCTC 57.039 32.000 0.00 0.00 0.00 3.71
8 9 8.210265 TCTTTTGCCTTTTGTCATTTAATTCCT 58.790 29.630 0.00 0.00 0.00 3.36
9 10 8.376889 TCTTTTGCCTTTTGTCATTTAATTCC 57.623 30.769 0.00 0.00 0.00 3.01
13 14 9.823647 TGTATTCTTTTGCCTTTTGTCATTTAA 57.176 25.926 0.00 0.00 0.00 1.52
14 15 9.995003 ATGTATTCTTTTGCCTTTTGTCATTTA 57.005 25.926 0.00 0.00 0.00 1.40
15 16 8.776470 CATGTATTCTTTTGCCTTTTGTCATTT 58.224 29.630 0.00 0.00 0.00 2.32
16 17 8.149647 TCATGTATTCTTTTGCCTTTTGTCATT 58.850 29.630 0.00 0.00 0.00 2.57
17 18 7.669427 TCATGTATTCTTTTGCCTTTTGTCAT 58.331 30.769 0.00 0.00 0.00 3.06
18 19 7.048629 TCATGTATTCTTTTGCCTTTTGTCA 57.951 32.000 0.00 0.00 0.00 3.58
19 20 7.147976 ACTCATGTATTCTTTTGCCTTTTGTC 58.852 34.615 0.00 0.00 0.00 3.18
20 21 7.054491 ACTCATGTATTCTTTTGCCTTTTGT 57.946 32.000 0.00 0.00 0.00 2.83
21 22 9.643693 ATTACTCATGTATTCTTTTGCCTTTTG 57.356 29.630 0.00 0.00 0.00 2.44
22 23 9.643693 CATTACTCATGTATTCTTTTGCCTTTT 57.356 29.630 0.00 0.00 0.00 2.27
23 24 8.806146 ACATTACTCATGTATTCTTTTGCCTTT 58.194 29.630 0.00 0.00 45.00 3.11
24 25 8.353423 ACATTACTCATGTATTCTTTTGCCTT 57.647 30.769 0.00 0.00 45.00 4.35
25 26 7.831193 AGACATTACTCATGTATTCTTTTGCCT 59.169 33.333 0.00 0.00 46.96 4.75
26 27 7.989826 AGACATTACTCATGTATTCTTTTGCC 58.010 34.615 0.00 0.00 46.96 4.52
42 43 9.740710 GGCCTTAAATATTGGATAGACATTACT 57.259 33.333 0.00 0.00 0.00 2.24
43 44 9.740710 AGGCCTTAAATATTGGATAGACATTAC 57.259 33.333 0.00 0.00 0.00 1.89
45 46 9.660544 AAAGGCCTTAAATATTGGATAGACATT 57.339 29.630 20.84 0.00 0.00 2.71
73 74 8.903820 GGTCATGCCTATTTTGTAGTAGAAAAT 58.096 33.333 18.72 18.72 36.98 1.82
74 75 7.885922 TGGTCATGCCTATTTTGTAGTAGAAAA 59.114 33.333 7.58 7.58 38.35 2.29
75 76 7.398829 TGGTCATGCCTATTTTGTAGTAGAAA 58.601 34.615 7.54 0.00 38.35 2.52
76 77 6.953101 TGGTCATGCCTATTTTGTAGTAGAA 58.047 36.000 7.54 0.00 38.35 2.10
77 78 6.553953 TGGTCATGCCTATTTTGTAGTAGA 57.446 37.500 7.54 0.00 38.35 2.59
78 79 7.498900 TGAATGGTCATGCCTATTTTGTAGTAG 59.501 37.037 7.54 0.00 38.35 2.57
79 80 7.342581 TGAATGGTCATGCCTATTTTGTAGTA 58.657 34.615 7.54 0.00 38.35 1.82
80 81 6.186957 TGAATGGTCATGCCTATTTTGTAGT 58.813 36.000 7.54 0.00 38.35 2.73
81 82 6.698008 TGAATGGTCATGCCTATTTTGTAG 57.302 37.500 7.54 0.00 38.35 2.74
82 83 7.473735 TTTGAATGGTCATGCCTATTTTGTA 57.526 32.000 7.54 0.00 38.35 2.41
83 84 5.999205 TTGAATGGTCATGCCTATTTTGT 57.001 34.783 7.54 0.00 38.35 2.83
84 85 7.670009 TTTTTGAATGGTCATGCCTATTTTG 57.330 32.000 7.54 0.00 38.35 2.44
105 106 6.260714 GGCAACAAAAAGATGACTCCATTTTT 59.739 34.615 0.00 0.00 38.32 1.94
106 107 5.759763 GGCAACAAAAAGATGACTCCATTTT 59.240 36.000 0.00 0.00 32.09 1.82
107 108 5.299949 GGCAACAAAAAGATGACTCCATTT 58.700 37.500 0.00 0.00 32.09 2.32
108 109 4.559300 CGGCAACAAAAAGATGACTCCATT 60.559 41.667 0.00 0.00 32.09 3.16
109 110 3.057315 CGGCAACAAAAAGATGACTCCAT 60.057 43.478 0.00 0.00 35.29 3.41
110 111 2.293122 CGGCAACAAAAAGATGACTCCA 59.707 45.455 0.00 0.00 0.00 3.86
111 112 2.351738 CCGGCAACAAAAAGATGACTCC 60.352 50.000 0.00 0.00 0.00 3.85
112 113 2.293399 ACCGGCAACAAAAAGATGACTC 59.707 45.455 0.00 0.00 0.00 3.36
113 114 2.034558 CACCGGCAACAAAAAGATGACT 59.965 45.455 0.00 0.00 0.00 3.41
114 115 2.034053 TCACCGGCAACAAAAAGATGAC 59.966 45.455 0.00 0.00 0.00 3.06
115 116 2.034053 GTCACCGGCAACAAAAAGATGA 59.966 45.455 0.00 0.00 0.00 2.92
116 117 2.223688 TGTCACCGGCAACAAAAAGATG 60.224 45.455 0.00 0.00 0.00 2.90
117 118 2.028130 TGTCACCGGCAACAAAAAGAT 58.972 42.857 0.00 0.00 0.00 2.40
118 119 1.464734 TGTCACCGGCAACAAAAAGA 58.535 45.000 0.00 0.00 0.00 2.52
119 120 2.507339 ATGTCACCGGCAACAAAAAG 57.493 45.000 12.95 0.00 0.00 2.27
120 121 2.969628 AATGTCACCGGCAACAAAAA 57.030 40.000 12.95 0.00 0.00 1.94
121 122 4.592485 ATTAATGTCACCGGCAACAAAA 57.408 36.364 12.95 10.74 0.00 2.44
122 123 5.707242 TTATTAATGTCACCGGCAACAAA 57.293 34.783 12.95 5.23 0.00 2.83
123 124 5.707242 TTTATTAATGTCACCGGCAACAA 57.293 34.783 12.95 0.00 0.00 2.83
124 125 5.009710 TGTTTTATTAATGTCACCGGCAACA 59.990 36.000 11.51 11.51 0.00 3.33
125 126 5.462405 TGTTTTATTAATGTCACCGGCAAC 58.538 37.500 0.00 0.00 0.00 4.17
126 127 5.707242 TGTTTTATTAATGTCACCGGCAA 57.293 34.783 0.00 0.00 0.00 4.52
127 128 5.645624 CATGTTTTATTAATGTCACCGGCA 58.354 37.500 0.00 0.00 0.00 5.69
128 129 4.502645 GCATGTTTTATTAATGTCACCGGC 59.497 41.667 0.00 0.00 0.00 6.13
129 130 5.890334 AGCATGTTTTATTAATGTCACCGG 58.110 37.500 0.00 0.00 0.00 5.28
130 131 7.810766 AAAGCATGTTTTATTAATGTCACCG 57.189 32.000 5.65 0.00 0.00 4.94
163 164 8.007405 ACTGTTAAAGTGGCTAGACAATTTTT 57.993 30.769 27.37 16.89 39.15 1.94
164 165 7.582667 ACTGTTAAAGTGGCTAGACAATTTT 57.417 32.000 27.37 19.16 39.15 1.82
165 166 8.685838 TTACTGTTAAAGTGGCTAGACAATTT 57.314 30.769 25.76 25.76 40.26 1.82
166 167 8.565416 GTTTACTGTTAAAGTGGCTAGACAATT 58.435 33.333 5.20 5.20 40.26 2.32
167 168 7.717875 TGTTTACTGTTAAAGTGGCTAGACAAT 59.282 33.333 0.00 0.00 40.26 2.71
168 169 7.011669 GTGTTTACTGTTAAAGTGGCTAGACAA 59.988 37.037 0.00 0.00 40.26 3.18
169 170 6.480981 GTGTTTACTGTTAAAGTGGCTAGACA 59.519 38.462 0.00 0.00 40.26 3.41
170 171 6.073385 GGTGTTTACTGTTAAAGTGGCTAGAC 60.073 42.308 0.00 0.00 40.26 2.59
171 172 5.993441 GGTGTTTACTGTTAAAGTGGCTAGA 59.007 40.000 0.00 0.00 40.26 2.43
172 173 5.761234 TGGTGTTTACTGTTAAAGTGGCTAG 59.239 40.000 0.00 0.00 40.26 3.42
173 174 5.682659 TGGTGTTTACTGTTAAAGTGGCTA 58.317 37.500 0.00 0.00 40.26 3.93
174 175 4.528920 TGGTGTTTACTGTTAAAGTGGCT 58.471 39.130 0.00 0.00 40.26 4.75
175 176 4.904253 TGGTGTTTACTGTTAAAGTGGC 57.096 40.909 0.00 0.00 40.26 5.01
176 177 6.695278 CACAATGGTGTTTACTGTTAAAGTGG 59.305 38.462 0.00 0.00 38.82 4.00
177 178 6.198216 GCACAATGGTGTTTACTGTTAAAGTG 59.802 38.462 1.31 0.00 46.95 3.16
178 179 6.127591 TGCACAATGGTGTTTACTGTTAAAGT 60.128 34.615 1.31 0.00 46.95 2.66
179 180 6.269315 TGCACAATGGTGTTTACTGTTAAAG 58.731 36.000 1.31 0.00 46.95 1.85
180 181 6.208988 TGCACAATGGTGTTTACTGTTAAA 57.791 33.333 1.31 0.00 46.95 1.52
181 182 5.836821 TGCACAATGGTGTTTACTGTTAA 57.163 34.783 1.31 0.00 46.95 2.01
182 183 6.039829 TCAATGCACAATGGTGTTTACTGTTA 59.960 34.615 1.31 0.00 46.95 2.41
183 184 4.935352 ATGCACAATGGTGTTTACTGTT 57.065 36.364 1.31 0.00 46.95 3.16
184 185 4.340666 TCAATGCACAATGGTGTTTACTGT 59.659 37.500 1.31 0.00 46.95 3.55
185 186 4.869215 TCAATGCACAATGGTGTTTACTG 58.131 39.130 1.31 0.00 46.95 2.74
186 187 5.528043 TTCAATGCACAATGGTGTTTACT 57.472 34.783 1.31 0.00 46.95 2.24
187 188 6.783892 ATTTCAATGCACAATGGTGTTTAC 57.216 33.333 1.31 0.00 46.95 2.01
188 189 6.988580 TGAATTTCAATGCACAATGGTGTTTA 59.011 30.769 1.31 0.00 46.95 2.01
189 190 5.821470 TGAATTTCAATGCACAATGGTGTTT 59.179 32.000 1.31 0.00 46.95 2.83
190 191 5.366460 TGAATTTCAATGCACAATGGTGTT 58.634 33.333 1.31 0.00 46.95 3.32
191 192 4.958509 TGAATTTCAATGCACAATGGTGT 58.041 34.783 1.31 0.00 46.95 4.16
192 193 5.926214 TTGAATTTCAATGCACAATGGTG 57.074 34.783 7.74 0.00 38.57 4.17
193 194 6.711194 TCAATTGAATTTCAATGCACAATGGT 59.289 30.769 22.00 3.90 45.57 3.55
194 195 7.018826 GTCAATTGAATTTCAATGCACAATGG 58.981 34.615 22.00 0.94 45.57 3.16
195 196 7.744276 CAGTCAATTGAATTTCAATGCACAATG 59.256 33.333 22.00 15.81 45.57 2.82
196 197 7.658167 TCAGTCAATTGAATTTCAATGCACAAT 59.342 29.630 22.00 5.81 45.57 2.71
197 198 6.985059 TCAGTCAATTGAATTTCAATGCACAA 59.015 30.769 22.00 12.23 45.57 3.33
198 199 6.421501 GTCAGTCAATTGAATTTCAATGCACA 59.578 34.615 22.00 6.86 45.57 4.57
199 200 6.643770 AGTCAGTCAATTGAATTTCAATGCAC 59.356 34.615 22.00 19.66 45.57 4.57
200 201 6.751157 AGTCAGTCAATTGAATTTCAATGCA 58.249 32.000 22.00 11.05 45.57 3.96
201 202 7.410087 CGAAGTCAGTCAATTGAATTTCAATGC 60.410 37.037 22.00 15.65 45.57 3.56
202 203 7.061441 CCGAAGTCAGTCAATTGAATTTCAATG 59.939 37.037 22.00 16.23 45.57 2.82
204 205 6.039270 ACCGAAGTCAGTCAATTGAATTTCAA 59.961 34.615 10.35 13.88 41.09 2.69
205 206 5.530915 ACCGAAGTCAGTCAATTGAATTTCA 59.469 36.000 10.35 0.00 35.72 2.69
206 207 6.002062 ACCGAAGTCAGTCAATTGAATTTC 57.998 37.500 10.35 9.00 35.72 2.17
207 208 7.504924 TTACCGAAGTCAGTCAATTGAATTT 57.495 32.000 10.35 0.00 35.72 1.82
208 209 7.444183 TCTTTACCGAAGTCAGTCAATTGAATT 59.556 33.333 10.35 0.00 38.01 2.17
209 210 6.934645 TCTTTACCGAAGTCAGTCAATTGAAT 59.065 34.615 10.35 6.06 36.70 2.57
210 211 6.285224 TCTTTACCGAAGTCAGTCAATTGAA 58.715 36.000 10.35 0.00 36.70 2.69
211 212 5.849510 TCTTTACCGAAGTCAGTCAATTGA 58.150 37.500 3.38 3.38 36.70 2.57
212 213 5.696724 ACTCTTTACCGAAGTCAGTCAATTG 59.303 40.000 0.00 0.00 36.70 2.32
213 214 5.855045 ACTCTTTACCGAAGTCAGTCAATT 58.145 37.500 0.00 0.00 36.70 2.32
214 215 5.244178 AGACTCTTTACCGAAGTCAGTCAAT 59.756 40.000 4.73 0.00 39.73 2.57
215 216 4.583489 AGACTCTTTACCGAAGTCAGTCAA 59.417 41.667 4.73 0.00 39.73 3.18
216 217 4.023107 CAGACTCTTTACCGAAGTCAGTCA 60.023 45.833 4.73 0.00 39.73 3.41
217 218 4.477780 CAGACTCTTTACCGAAGTCAGTC 58.522 47.826 4.73 0.00 38.53 3.51
218 219 3.305471 GCAGACTCTTTACCGAAGTCAGT 60.305 47.826 4.73 0.00 36.70 3.41
219 220 3.246619 GCAGACTCTTTACCGAAGTCAG 58.753 50.000 4.73 0.00 36.70 3.51
220 221 2.626266 TGCAGACTCTTTACCGAAGTCA 59.374 45.455 4.73 0.00 36.70 3.41
236 237 0.401356 TGCTCCAGTCCAATTGCAGA 59.599 50.000 0.00 0.00 0.00 4.26
245 246 0.798776 CAACATCGTTGCTCCAGTCC 59.201 55.000 0.00 0.00 0.00 3.85
261 262 0.240145 GCGGGTAAAAGAGTGGCAAC 59.760 55.000 0.00 0.00 0.00 4.17
265 266 0.320073 TCGTGCGGGTAAAAGAGTGG 60.320 55.000 0.00 0.00 0.00 4.00
274 275 0.607112 TGGTAATGTTCGTGCGGGTA 59.393 50.000 0.00 0.00 0.00 3.69
311 312 1.133181 TCCATGGGTGACTCAAGGCA 61.133 55.000 13.02 0.00 0.00 4.75
328 329 5.876651 ATCAAGGCTTCCCATATTTTTCC 57.123 39.130 0.00 0.00 0.00 3.13
329 330 6.877236 TCAATCAAGGCTTCCCATATTTTTC 58.123 36.000 0.00 0.00 0.00 2.29
333 335 5.708544 TCATCAATCAAGGCTTCCCATATT 58.291 37.500 0.00 0.00 0.00 1.28
335 337 4.794311 TCATCAATCAAGGCTTCCCATA 57.206 40.909 0.00 0.00 0.00 2.74
351 353 0.888736 CGGGCCAAGTGTGTTCATCA 60.889 55.000 4.39 0.00 0.00 3.07
359 361 1.274703 ATCATCCTCGGGCCAAGTGT 61.275 55.000 4.39 0.00 0.00 3.55
360 362 0.533755 GATCATCCTCGGGCCAAGTG 60.534 60.000 4.39 0.00 0.00 3.16
366 368 2.520069 TCTAAGAGATCATCCTCGGGC 58.480 52.381 0.00 0.00 38.19 6.13
367 369 4.022416 CACTTCTAAGAGATCATCCTCGGG 60.022 50.000 0.00 0.00 38.19 5.14
368 370 4.558496 GCACTTCTAAGAGATCATCCTCGG 60.558 50.000 0.00 0.00 38.19 4.63
371 373 5.207354 TCTGCACTTCTAAGAGATCATCCT 58.793 41.667 0.00 0.00 0.00 3.24
379 381 4.825422 TCCACAATCTGCACTTCTAAGAG 58.175 43.478 0.00 0.00 0.00 2.85
380 382 4.890158 TCCACAATCTGCACTTCTAAGA 57.110 40.909 0.00 0.00 0.00 2.10
382 384 5.412594 GTGATTCCACAATCTGCACTTCTAA 59.587 40.000 0.00 0.00 42.72 2.10
394 396 6.947733 TGGTGAAGATAAAGTGATTCCACAAT 59.052 34.615 0.00 0.00 45.54 2.71
395 397 6.303054 TGGTGAAGATAAAGTGATTCCACAA 58.697 36.000 0.00 0.00 45.54 3.33
396 398 5.875224 TGGTGAAGATAAAGTGATTCCACA 58.125 37.500 0.00 0.00 45.54 4.17
399 401 7.770897 ACACTATGGTGAAGATAAAGTGATTCC 59.229 37.037 16.98 0.00 45.61 3.01
434 436 8.522830 TGTTTGATTCTTTATGGAGGTGAAATC 58.477 33.333 0.00 0.00 0.00 2.17
469 471 6.524101 AGTTTATGTTGTTGTGTCCAGTTT 57.476 33.333 0.00 0.00 0.00 2.66
471 473 7.500892 TGATAAGTTTATGTTGTTGTGTCCAGT 59.499 33.333 0.00 0.00 0.00 4.00
474 476 8.094798 TCTGATAAGTTTATGTTGTTGTGTCC 57.905 34.615 0.00 0.00 0.00 4.02
480 482 8.786826 TTCGGATCTGATAAGTTTATGTTGTT 57.213 30.769 4.74 0.00 0.00 2.83
481 483 8.964476 ATTCGGATCTGATAAGTTTATGTTGT 57.036 30.769 4.74 0.00 0.00 3.32
524 526 6.479884 AGTGCCATGAGATTAGAGAGTTTTT 58.520 36.000 0.00 0.00 0.00 1.94
531 535 4.944619 TGGTAGTGCCATGAGATTAGAG 57.055 45.455 0.00 0.00 43.61 2.43
544 548 3.055819 TCCTCTCATTCTTGTGGTAGTGC 60.056 47.826 0.00 0.00 0.00 4.40
548 552 6.627087 AGATTTCCTCTCATTCTTGTGGTA 57.373 37.500 0.00 0.00 0.00 3.25
549 553 5.511386 AGATTTCCTCTCATTCTTGTGGT 57.489 39.130 0.00 0.00 0.00 4.16
553 557 9.044150 GTGAGAATAGATTTCCTCTCATTCTTG 57.956 37.037 4.11 0.00 44.44 3.02
578 582 7.548097 ACGTCTAGTGATCATCATAGTTTTGT 58.452 34.615 0.00 0.00 0.00 2.83
600 604 4.879598 ACCTCTTTATTCTTCGTCAACGT 58.120 39.130 2.09 0.00 40.80 3.99
614 618 4.402793 CCTCGGATCTTCAAGACCTCTTTA 59.597 45.833 0.00 0.00 33.11 1.85
616 620 2.763448 CCTCGGATCTTCAAGACCTCTT 59.237 50.000 0.00 0.00 36.45 2.85
650 654 2.476320 GCTTCCATCTTGGCGCTCC 61.476 63.158 7.64 0.00 37.47 4.70
651 655 2.476320 GGCTTCCATCTTGGCGCTC 61.476 63.158 7.64 0.00 37.47 5.03
675 679 3.133003 TCTGAGAAATTTAGGCTCCCTCG 59.867 47.826 0.00 0.00 34.61 4.63
676 680 4.407296 TCTCTGAGAAATTTAGGCTCCCTC 59.593 45.833 4.57 0.00 34.61 4.30
680 684 5.115480 CCACTCTCTGAGAAATTTAGGCTC 58.885 45.833 8.95 0.00 33.32 4.70
681 685 4.080638 CCCACTCTCTGAGAAATTTAGGCT 60.081 45.833 8.95 0.00 33.32 4.58
682 686 4.195416 CCCACTCTCTGAGAAATTTAGGC 58.805 47.826 8.95 0.00 33.32 3.93
685 689 3.054361 GCCCCCACTCTCTGAGAAATTTA 60.054 47.826 8.95 0.00 33.32 1.40
690 694 1.984570 CGCCCCCACTCTCTGAGAA 60.985 63.158 8.95 0.00 33.32 2.87
712 716 2.782222 TATCCTCTGGTGCCGTCGC 61.782 63.158 0.00 0.00 0.00 5.19
717 721 1.555075 TCAAGTGTATCCTCTGGTGCC 59.445 52.381 0.00 0.00 0.00 5.01
718 722 3.334583 TTCAAGTGTATCCTCTGGTGC 57.665 47.619 0.00 0.00 0.00 5.01
749 753 8.236586 GCCTTCAAGTTTTTCTCAACAAAAATT 58.763 29.630 0.00 0.00 37.52 1.82
750 754 7.607607 AGCCTTCAAGTTTTTCTCAACAAAAAT 59.392 29.630 0.00 0.00 37.52 1.82
751 755 6.934083 AGCCTTCAAGTTTTTCTCAACAAAAA 59.066 30.769 0.00 0.00 33.72 1.94
752 756 6.463360 AGCCTTCAAGTTTTTCTCAACAAAA 58.537 32.000 0.00 0.00 0.00 2.44
753 757 6.036577 AGCCTTCAAGTTTTTCTCAACAAA 57.963 33.333 0.00 0.00 0.00 2.83
754 758 5.184864 TGAGCCTTCAAGTTTTTCTCAACAA 59.815 36.000 0.00 0.00 0.00 2.83
755 759 4.704540 TGAGCCTTCAAGTTTTTCTCAACA 59.295 37.500 0.00 0.00 0.00 3.33
756 760 5.248870 TGAGCCTTCAAGTTTTTCTCAAC 57.751 39.130 0.00 0.00 0.00 3.18
757 761 5.829924 AGATGAGCCTTCAAGTTTTTCTCAA 59.170 36.000 0.00 0.00 36.78 3.02
758 762 5.240183 CAGATGAGCCTTCAAGTTTTTCTCA 59.760 40.000 0.00 0.00 36.78 3.27
759 763 5.335504 CCAGATGAGCCTTCAAGTTTTTCTC 60.336 44.000 0.00 0.00 36.78 2.87
760 764 4.522022 CCAGATGAGCCTTCAAGTTTTTCT 59.478 41.667 0.00 0.00 36.78 2.52
761 765 4.802999 CCAGATGAGCCTTCAAGTTTTTC 58.197 43.478 0.00 0.00 36.78 2.29
762 766 3.006217 GCCAGATGAGCCTTCAAGTTTTT 59.994 43.478 0.00 0.00 36.78 1.94
763 767 2.560105 GCCAGATGAGCCTTCAAGTTTT 59.440 45.455 0.00 0.00 36.78 2.43
764 768 2.165998 GCCAGATGAGCCTTCAAGTTT 58.834 47.619 0.00 0.00 36.78 2.66
765 769 1.831580 GCCAGATGAGCCTTCAAGTT 58.168 50.000 0.00 0.00 36.78 2.66
766 770 3.566130 GCCAGATGAGCCTTCAAGT 57.434 52.632 0.00 0.00 36.78 3.16
774 778 0.895100 TTGTTGTGGGCCAGATGAGC 60.895 55.000 6.40 0.00 0.00 4.26
775 779 1.843368 ATTGTTGTGGGCCAGATGAG 58.157 50.000 6.40 0.00 0.00 2.90
776 780 2.945440 GCTATTGTTGTGGGCCAGATGA 60.945 50.000 6.40 0.00 0.00 2.92
777 781 1.406539 GCTATTGTTGTGGGCCAGATG 59.593 52.381 6.40 0.00 0.00 2.90
778 782 1.005805 TGCTATTGTTGTGGGCCAGAT 59.994 47.619 6.40 0.00 0.00 2.90
779 783 0.403655 TGCTATTGTTGTGGGCCAGA 59.596 50.000 6.40 0.99 0.00 3.86
780 784 0.527565 GTGCTATTGTTGTGGGCCAG 59.472 55.000 6.40 0.00 0.00 4.85
781 785 1.240641 CGTGCTATTGTTGTGGGCCA 61.241 55.000 0.00 0.00 0.00 5.36
782 786 1.506262 CGTGCTATTGTTGTGGGCC 59.494 57.895 0.00 0.00 0.00 5.80
783 787 1.154035 GCGTGCTATTGTTGTGGGC 60.154 57.895 0.00 0.00 0.00 5.36
784 788 1.134487 CGCGTGCTATTGTTGTGGG 59.866 57.895 0.00 0.00 0.00 4.61
785 789 1.511887 GCGCGTGCTATTGTTGTGG 60.512 57.895 15.02 0.00 38.39 4.17
786 790 1.511887 GGCGCGTGCTATTGTTGTG 60.512 57.895 21.89 0.00 42.25 3.33
787 791 2.686816 GGGCGCGTGCTATTGTTGT 61.687 57.895 21.89 0.00 42.25 3.32
788 792 2.100216 GGGCGCGTGCTATTGTTG 59.900 61.111 21.89 0.00 42.25 3.33
789 793 3.131478 GGGGCGCGTGCTATTGTT 61.131 61.111 21.89 0.00 42.25 2.83
790 794 3.910914 TTGGGGCGCGTGCTATTGT 62.911 57.895 21.89 0.00 42.25 2.71
791 795 3.130819 TTGGGGCGCGTGCTATTG 61.131 61.111 21.89 0.00 42.25 1.90
792 796 3.131478 GTTGGGGCGCGTGCTATT 61.131 61.111 21.89 0.00 42.25 1.73
793 797 4.096003 AGTTGGGGCGCGTGCTAT 62.096 61.111 21.89 0.00 42.25 2.97
803 807 3.953775 ACGCTGGTCCAGTTGGGG 61.954 66.667 20.24 6.08 37.22 4.96
804 808 2.669569 CACGCTGGTCCAGTTGGG 60.670 66.667 20.24 10.62 33.43 4.12
805 809 2.669569 CCACGCTGGTCCAGTTGG 60.670 66.667 20.24 20.71 33.07 3.77
806 810 2.669569 CCCACGCTGGTCCAGTTG 60.670 66.667 20.24 16.26 35.17 3.16
807 811 4.643387 GCCCACGCTGGTCCAGTT 62.643 66.667 20.24 5.06 35.17 3.16
812 816 4.767255 CAGAGGCCCACGCTGGTC 62.767 72.222 0.00 0.00 42.51 4.02
814 818 4.463879 CTCAGAGGCCCACGCTGG 62.464 72.222 0.00 0.00 45.75 4.85
815 819 2.290122 CTACTCAGAGGCCCACGCTG 62.290 65.000 0.00 2.27 46.91 5.18
816 820 2.037367 TACTCAGAGGCCCACGCT 59.963 61.111 0.00 0.00 34.44 5.07
817 821 2.010582 CTCTACTCAGAGGCCCACGC 62.011 65.000 0.00 0.00 44.05 5.34
818 822 2.111162 CTCTACTCAGAGGCCCACG 58.889 63.158 0.00 0.00 44.05 4.94
863 867 2.997897 ACTGACTCGGTCCAGGCC 60.998 66.667 0.00 0.00 0.00 5.19
870 874 1.950007 CGACACTGACTGACTCGGT 59.050 57.895 0.00 0.00 39.30 4.69
871 875 1.442857 GCGACACTGACTGACTCGG 60.443 63.158 0.00 0.00 0.00 4.63
968 999 2.003830 TCTTCTCTTCTCCTCTCCCCA 58.996 52.381 0.00 0.00 0.00 4.96
981 1012 6.096001 GCTTCATCTCTTCTCTTCTCTTCTCT 59.904 42.308 0.00 0.00 0.00 3.10
982 1013 6.268566 GCTTCATCTCTTCTCTTCTCTTCTC 58.731 44.000 0.00 0.00 0.00 2.87
983 1014 5.127682 GGCTTCATCTCTTCTCTTCTCTTCT 59.872 44.000 0.00 0.00 0.00 2.85
984 1015 5.351458 GGCTTCATCTCTTCTCTTCTCTTC 58.649 45.833 0.00 0.00 0.00 2.87
985 1016 4.142182 CGGCTTCATCTCTTCTCTTCTCTT 60.142 45.833 0.00 0.00 0.00 2.85
986 1017 3.381272 CGGCTTCATCTCTTCTCTTCTCT 59.619 47.826 0.00 0.00 0.00 3.10
1095 1126 1.153628 GGAGGTGCGCTTCACGTAT 60.154 57.895 9.73 0.00 46.56 3.06
1173 1204 1.203492 AGTTGAGAGGGAGGGGTCAAT 60.203 52.381 0.00 0.00 31.84 2.57
1174 1205 0.193574 AGTTGAGAGGGAGGGGTCAA 59.806 55.000 0.00 0.00 0.00 3.18
1176 1207 0.041982 AGAGTTGAGAGGGAGGGGTC 59.958 60.000 0.00 0.00 0.00 4.46
1178 1209 0.041833 TGAGAGTTGAGAGGGAGGGG 59.958 60.000 0.00 0.00 0.00 4.79
1179 1210 1.761784 CATGAGAGTTGAGAGGGAGGG 59.238 57.143 0.00 0.00 0.00 4.30
1180 1211 2.430332 GACATGAGAGTTGAGAGGGAGG 59.570 54.545 0.00 0.00 0.00 4.30
1181 1212 3.095332 TGACATGAGAGTTGAGAGGGAG 58.905 50.000 0.00 0.00 0.00 4.30
1182 1213 3.175438 TGACATGAGAGTTGAGAGGGA 57.825 47.619 0.00 0.00 0.00 4.20
1233 1276 6.830912 TCGATTTGGAGAAGTAATGGATCAT 58.169 36.000 0.00 0.00 0.00 2.45
1269 1312 7.466804 ACCTTCATTATTAACCTCAACAGGAA 58.533 34.615 0.00 0.00 43.65 3.36
1656 2181 9.145865 GCTAGTAATAAATCTGCTACATTCCTC 57.854 37.037 0.00 0.00 0.00 3.71
1735 3195 2.726681 CGTAAAACAGCCGTGCCATTAC 60.727 50.000 0.00 0.00 0.00 1.89
1745 3205 3.423996 TTGTGGAAACGTAAAACAGCC 57.576 42.857 0.00 0.00 0.00 4.85
1779 3239 2.678190 GCTCCAGCCCGGTGATAATATC 60.678 54.545 0.00 0.00 35.57 1.63
1797 3257 9.950496 TCCCAATGAAAAATATCTAGATAGCTC 57.050 33.333 17.22 10.94 0.00 4.09
1818 3278 5.636903 AAATCTAGCTAGCTTCATCCCAA 57.363 39.130 24.88 0.24 0.00 4.12
1851 3311 4.686191 ACAGAAGAGAATATGCCAGGAG 57.314 45.455 0.00 0.00 0.00 3.69
1893 3354 3.883489 ACAAGCCTAAGAAAGTCAACCAC 59.117 43.478 0.00 0.00 0.00 4.16
1925 3387 8.660435 TCCAATAAACTAGCTAGCTTAATGGAT 58.340 33.333 31.90 13.56 38.25 3.41
1970 3432 6.236017 TGTTTACTCTAAAGATGGCAAACG 57.764 37.500 0.00 0.00 0.00 3.60
2025 3500 7.325660 AGATCACCATTGCTATAACAACAAG 57.674 36.000 0.00 0.00 31.03 3.16
2095 3570 4.651045 AGGTCCAAGCAATCTTTTCAAACT 59.349 37.500 0.00 0.00 0.00 2.66
2096 3571 4.746611 CAGGTCCAAGCAATCTTTTCAAAC 59.253 41.667 0.00 0.00 0.00 2.93
2186 3674 4.894784 TCTCTCGGTACTGAAAGCAAAAT 58.105 39.130 5.76 0.00 37.60 1.82
2204 3692 5.393068 AATGTGGATCTCTCTCTCTCTCT 57.607 43.478 0.00 0.00 0.00 3.10
2205 3693 6.299141 AGTAATGTGGATCTCTCTCTCTCTC 58.701 44.000 0.00 0.00 0.00 3.20
2206 3694 6.266131 AGTAATGTGGATCTCTCTCTCTCT 57.734 41.667 0.00 0.00 0.00 3.10
2207 3695 6.959639 AAGTAATGTGGATCTCTCTCTCTC 57.040 41.667 0.00 0.00 0.00 3.20
2208 3696 7.004086 CCTAAGTAATGTGGATCTCTCTCTCT 58.996 42.308 0.00 0.00 0.00 3.10
2209 3697 7.001674 TCCTAAGTAATGTGGATCTCTCTCTC 58.998 42.308 0.00 0.00 0.00 3.20
2210 3698 6.916909 TCCTAAGTAATGTGGATCTCTCTCT 58.083 40.000 0.00 0.00 0.00 3.10
2299 3796 5.865013 TGACGCAAACTCGTTAATCTATTCA 59.135 36.000 0.00 0.00 43.42 2.57
2352 3849 4.441773 GCCTAGTCTCCAGTAAAGTAAGCC 60.442 50.000 0.00 0.00 0.00 4.35
2362 3859 3.010808 AGAACACTAGCCTAGTCTCCAGT 59.989 47.826 0.17 0.00 36.76 4.00
2363 3860 3.626930 AGAACACTAGCCTAGTCTCCAG 58.373 50.000 0.17 0.00 36.76 3.86
2364 3861 3.741245 AGAACACTAGCCTAGTCTCCA 57.259 47.619 0.17 0.00 36.76 3.86
2366 3863 5.120986 GCAAAAAGAACACTAGCCTAGTCTC 59.879 44.000 0.17 2.10 36.76 3.36
2367 3864 4.998033 GCAAAAAGAACACTAGCCTAGTCT 59.002 41.667 0.17 0.00 36.76 3.24
2368 3865 4.755123 TGCAAAAAGAACACTAGCCTAGTC 59.245 41.667 0.17 0.00 36.76 2.59
2369 3866 4.515567 GTGCAAAAAGAACACTAGCCTAGT 59.484 41.667 0.00 0.00 40.28 2.57
2370 3867 4.515191 TGTGCAAAAAGAACACTAGCCTAG 59.485 41.667 0.00 0.00 35.33 3.02
2371 3868 4.456535 TGTGCAAAAAGAACACTAGCCTA 58.543 39.130 0.00 0.00 35.33 3.93
2393 3890 4.091549 ACAGCTTGGGTGAATGAATCAAT 58.908 39.130 3.72 0.00 40.50 2.57
2394 3891 3.499338 ACAGCTTGGGTGAATGAATCAA 58.501 40.909 3.72 0.00 40.50 2.57
2407 3908 9.378551 TCTAGTTTATGTTATGTTACAGCTTGG 57.621 33.333 0.00 0.00 0.00 3.61
2448 3953 9.109246 AGAGACATTGATCCATCCATTATAGAA 57.891 33.333 0.00 0.00 0.00 2.10
2451 3956 7.458806 TGGAGAGACATTGATCCATCCATTATA 59.541 37.037 0.00 0.00 36.92 0.98
2459 3968 3.391774 ACCTGGAGAGACATTGATCCAT 58.608 45.455 0.00 0.00 40.91 3.41
2462 3971 4.742138 GCCTAACCTGGAGAGACATTGATC 60.742 50.000 0.00 0.00 0.00 2.92
2608 4117 1.012841 GCAGATGACTTGGTGCTAGC 58.987 55.000 8.10 8.10 32.97 3.42
2632 4141 1.280421 GTGTTGGGCTCTGAGGATCTT 59.720 52.381 6.83 0.00 34.92 2.40
2654 4163 2.069273 CAGTCAGTAAAGAACAGGCCG 58.931 52.381 0.00 0.00 0.00 6.13
2655 4164 3.067833 GTCAGTCAGTAAAGAACAGGCC 58.932 50.000 0.00 0.00 0.00 5.19
2687 4211 5.954153 ATTCAGTGAGATGAGATGGTTCT 57.046 39.130 0.00 0.00 33.88 3.01
2688 4212 7.550551 TGTTTATTCAGTGAGATGAGATGGTTC 59.449 37.037 0.00 0.00 0.00 3.62
2689 4213 7.397221 TGTTTATTCAGTGAGATGAGATGGTT 58.603 34.615 0.00 0.00 0.00 3.67
2691 4215 7.465111 CGTTGTTTATTCAGTGAGATGAGATGG 60.465 40.741 0.00 0.00 0.00 3.51
2693 4217 6.536582 CCGTTGTTTATTCAGTGAGATGAGAT 59.463 38.462 0.00 0.00 0.00 2.75
2694 4218 5.869344 CCGTTGTTTATTCAGTGAGATGAGA 59.131 40.000 0.00 0.00 0.00 3.27
2695 4219 5.446473 GCCGTTGTTTATTCAGTGAGATGAG 60.446 44.000 0.00 0.00 0.00 2.90
2696 4220 4.391830 GCCGTTGTTTATTCAGTGAGATGA 59.608 41.667 0.00 0.00 0.00 2.92
2725 4258 3.005791 GCACCATTGAAACCACTAGCTTT 59.994 43.478 0.00 0.00 0.00 3.51
2728 4261 2.162408 GAGCACCATTGAAACCACTAGC 59.838 50.000 0.00 0.00 0.00 3.42
2731 4264 2.363306 TGAGCACCATTGAAACCACT 57.637 45.000 0.00 0.00 0.00 4.00
2739 4273 3.733988 GCTGAACATGATGAGCACCATTG 60.734 47.826 9.50 0.00 35.17 2.82
2740 4274 2.426024 GCTGAACATGATGAGCACCATT 59.574 45.455 9.50 0.00 35.17 3.16
2741 4275 2.022195 GCTGAACATGATGAGCACCAT 58.978 47.619 9.50 0.00 38.43 3.55
2782 4316 2.825532 CCCAATCACCAAGTTTCGGATT 59.174 45.455 0.00 0.00 0.00 3.01
2800 4334 5.222048 GCTATAGGGTCCAACATAATTCCCA 60.222 44.000 1.04 0.00 37.56 4.37
2823 4382 2.982744 GCTGGGGCAAACTCGAAGC 61.983 63.158 0.00 0.00 38.54 3.86
2849 4408 4.765339 AGGAAATGGTTAAGTTGCACCTAC 59.235 41.667 7.40 0.00 33.76 3.18
2932 4501 5.577164 ACAATGAACACACTAGCTATCGAAC 59.423 40.000 0.00 0.00 0.00 3.95
2949 4566 1.927487 AATCCAGCAGCCACAATGAA 58.073 45.000 0.00 0.00 0.00 2.57
2967 4584 8.717821 GCTAGATATTTAATGTCACGGCAATAA 58.282 33.333 4.61 0.00 0.00 1.40
2968 4585 7.875554 TGCTAGATATTTAATGTCACGGCAATA 59.124 33.333 4.61 0.00 0.00 1.90
2969 4586 6.710295 TGCTAGATATTTAATGTCACGGCAAT 59.290 34.615 4.61 0.00 0.00 3.56
2970 4587 6.052360 TGCTAGATATTTAATGTCACGGCAA 58.948 36.000 4.61 0.00 0.00 4.52
2974 4591 8.803201 TCTTCTGCTAGATATTTAATGTCACG 57.197 34.615 4.61 0.00 0.00 4.35
2987 4607 5.419239 AGCTTGAACTTCTTCTGCTAGAT 57.581 39.130 0.00 0.00 36.12 1.98
2988 4608 4.881019 AGCTTGAACTTCTTCTGCTAGA 57.119 40.909 0.00 0.00 36.12 2.43
2991 4611 2.292845 GCAAGCTTGAACTTCTTCTGCT 59.707 45.455 30.39 0.00 38.01 4.24
2996 4616 5.105595 ACAAAAGAGCAAGCTTGAACTTCTT 60.106 36.000 30.39 24.29 0.00 2.52
3001 4621 3.067320 AGGACAAAAGAGCAAGCTTGAAC 59.933 43.478 30.39 20.53 0.00 3.18
3016 4636 8.833231 TTCAACAAATGTTTTACAAGGACAAA 57.167 26.923 0.00 0.00 35.83 2.83
3017 4637 8.877779 CATTCAACAAATGTTTTACAAGGACAA 58.122 29.630 0.00 0.00 40.00 3.18
3018 4638 8.417780 CATTCAACAAATGTTTTACAAGGACA 57.582 30.769 0.00 0.00 40.00 4.02
3032 4661 1.135517 GGCGCGGTACATTCAACAAAT 60.136 47.619 8.83 0.00 0.00 2.32
3052 4681 3.366121 CCAAGAGCATATATTCGAGTGCG 59.634 47.826 0.00 0.00 42.18 5.34
3053 4682 4.310769 ACCAAGAGCATATATTCGAGTGC 58.689 43.478 0.00 0.00 37.84 4.40
3054 4683 7.371159 TCTAACCAAGAGCATATATTCGAGTG 58.629 38.462 0.00 0.00 0.00 3.51
3055 4684 7.526142 TCTAACCAAGAGCATATATTCGAGT 57.474 36.000 0.00 0.00 0.00 4.18
3081 4717 3.007290 CAGGGATCACACCACGATGATAT 59.993 47.826 0.00 0.00 35.67 1.63
3102 4740 5.538813 AGATTAGTACACCCGCATAAGATCA 59.461 40.000 0.00 0.00 0.00 2.92
3122 4760 6.646240 GCACAACCAACATGTTTATTCAGATT 59.354 34.615 8.77 0.00 0.00 2.40
3134 4782 1.198767 CAACGTGCACAACCAACATG 58.801 50.000 18.64 0.00 0.00 3.21
3150 4798 2.656422 GCACATAATCACACGTTGCAAC 59.344 45.455 19.89 19.89 0.00 4.17
3151 4799 2.664151 CGCACATAATCACACGTTGCAA 60.664 45.455 0.00 0.00 0.00 4.08
3152 4800 1.136113 CGCACATAATCACACGTTGCA 60.136 47.619 4.22 0.00 0.00 4.08
3154 4802 1.202020 CCCGCACATAATCACACGTTG 60.202 52.381 0.00 0.00 0.00 4.10
3157 4805 1.089481 AGCCCGCACATAATCACACG 61.089 55.000 0.00 0.00 0.00 4.49
3158 4806 1.094785 AAGCCCGCACATAATCACAC 58.905 50.000 0.00 0.00 0.00 3.82
3166 4814 3.055719 CCGTCAAAGCCCGCACAT 61.056 61.111 0.00 0.00 0.00 3.21
3171 4819 0.517316 CTCTTTTCCGTCAAAGCCCG 59.483 55.000 0.00 0.00 34.26 6.13
3190 4838 8.421673 AACTATTTTTCAGTACGAATAGCTCC 57.578 34.615 0.00 0.00 36.17 4.70
3203 4851 8.853345 CATTTTCGGTGATGAACTATTTTTCAG 58.147 33.333 0.00 0.00 38.87 3.02
3206 4854 7.096551 CCCATTTTCGGTGATGAACTATTTTT 58.903 34.615 0.00 0.00 0.00 1.94
3220 4869 3.506398 ACAAATTCTCCCCATTTTCGGT 58.494 40.909 0.00 0.00 0.00 4.69
3222 4871 4.690280 CCAAACAAATTCTCCCCATTTTCG 59.310 41.667 0.00 0.00 0.00 3.46
3256 4923 1.895280 GCTCACTGCAAGCGTGACTC 61.895 60.000 2.99 7.00 42.31 3.36
3263 4930 1.457346 ATAGTTGGCTCACTGCAAGC 58.543 50.000 0.00 0.00 45.15 4.01
3264 4931 7.657354 TGTATATAATAGTTGGCTCACTGCAAG 59.343 37.037 0.00 0.00 45.15 4.01
3267 4934 6.591834 CCTGTATATAATAGTTGGCTCACTGC 59.408 42.308 0.70 0.00 41.94 4.40
3268 4935 7.896811 TCCTGTATATAATAGTTGGCTCACTG 58.103 38.462 0.70 0.00 0.00 3.66
3269 4936 7.730784 ACTCCTGTATATAATAGTTGGCTCACT 59.269 37.037 0.00 0.00 0.00 3.41
3288 4956 6.187682 CCCAACCAGAAAATTATACTCCTGT 58.812 40.000 0.00 0.00 0.00 4.00
3289 4957 5.067805 GCCCAACCAGAAAATTATACTCCTG 59.932 44.000 0.00 0.00 0.00 3.86
3290 4958 5.044105 AGCCCAACCAGAAAATTATACTCCT 60.044 40.000 0.00 0.00 0.00 3.69
3291 4959 5.067805 CAGCCCAACCAGAAAATTATACTCC 59.932 44.000 0.00 0.00 0.00 3.85
3292 4960 5.652452 ACAGCCCAACCAGAAAATTATACTC 59.348 40.000 0.00 0.00 0.00 2.59
3293 4961 5.418840 CACAGCCCAACCAGAAAATTATACT 59.581 40.000 0.00 0.00 0.00 2.12
3294 4962 5.417580 TCACAGCCCAACCAGAAAATTATAC 59.582 40.000 0.00 0.00 0.00 1.47
3295 4963 5.575157 TCACAGCCCAACCAGAAAATTATA 58.425 37.500 0.00 0.00 0.00 0.98
3303 4971 1.150536 GGTTCACAGCCCAACCAGA 59.849 57.895 0.00 0.00 41.65 3.86
3315 4983 5.863935 GCCATGTGAAGAAAATTAGGTTCAC 59.136 40.000 15.07 15.07 45.93 3.18
3328 4996 4.025040 ACAGAAAGATGCCATGTGAAGA 57.975 40.909 0.00 0.00 0.00 2.87
3329 4997 4.458295 AGAACAGAAAGATGCCATGTGAAG 59.542 41.667 0.00 0.00 0.00 3.02
3330 4998 4.401022 AGAACAGAAAGATGCCATGTGAA 58.599 39.130 0.00 0.00 0.00 3.18
3331 4999 4.025040 AGAACAGAAAGATGCCATGTGA 57.975 40.909 0.00 0.00 0.00 3.58
3339 5007 5.704515 ACTGATCCACAAGAACAGAAAGATG 59.295 40.000 6.93 0.00 45.77 2.90
3348 5016 8.562892 CATAATAATCCACTGATCCACAAGAAC 58.437 37.037 0.00 0.00 0.00 3.01
3355 5023 5.793817 CGGACATAATAATCCACTGATCCA 58.206 41.667 0.00 0.00 34.35 3.41
3356 5024 4.631813 GCGGACATAATAATCCACTGATCC 59.368 45.833 0.00 0.00 34.35 3.36
3357 5025 5.237815 TGCGGACATAATAATCCACTGATC 58.762 41.667 0.00 0.00 34.35 2.92
3358 5026 5.227569 TGCGGACATAATAATCCACTGAT 57.772 39.130 0.00 0.00 34.35 2.90
3359 5027 4.681074 TGCGGACATAATAATCCACTGA 57.319 40.909 0.00 0.00 34.35 3.41
3360 5028 8.768019 CATATATGCGGACATAATAATCCACTG 58.232 37.037 0.00 0.00 41.99 3.66
3361 5029 8.486210 ACATATATGCGGACATAATAATCCACT 58.514 33.333 12.79 0.00 41.99 4.00
3362 5030 8.662781 ACATATATGCGGACATAATAATCCAC 57.337 34.615 12.79 0.00 41.99 4.02
3374 5042 5.049680 CCTTGTTGGTTACATATATGCGGAC 60.050 44.000 12.79 8.55 36.44 4.79
3376 5044 4.320202 GCCTTGTTGGTTACATATATGCGG 60.320 45.833 12.79 0.22 36.44 5.69
3377 5045 4.515191 AGCCTTGTTGGTTACATATATGCG 59.485 41.667 12.79 0.00 36.44 4.73
3384 5052 3.508845 ACAGAGCCTTGTTGGTTACAT 57.491 42.857 0.00 0.00 36.44 2.29
3388 5056 3.577805 AGTAACAGAGCCTTGTTGGTT 57.422 42.857 12.32 0.00 41.18 3.67
3389 5057 3.577805 AAGTAACAGAGCCTTGTTGGT 57.422 42.857 12.32 0.00 41.18 3.67
3391 5059 3.253432 GGGAAAGTAACAGAGCCTTGTTG 59.747 47.826 12.32 0.00 41.18 3.33
3392 5060 3.138468 AGGGAAAGTAACAGAGCCTTGTT 59.862 43.478 8.31 8.31 43.34 2.83
3393 5061 2.711547 AGGGAAAGTAACAGAGCCTTGT 59.288 45.455 0.00 0.00 0.00 3.16
3394 5062 3.244561 TGAGGGAAAGTAACAGAGCCTTG 60.245 47.826 0.00 0.00 0.00 3.61
3395 5063 2.979678 TGAGGGAAAGTAACAGAGCCTT 59.020 45.455 0.00 0.00 0.00 4.35
3396 5064 2.621070 TGAGGGAAAGTAACAGAGCCT 58.379 47.619 0.00 0.00 0.00 4.58
3397 5065 3.418684 TTGAGGGAAAGTAACAGAGCC 57.581 47.619 0.00 0.00 0.00 4.70
3398 5066 5.767816 TTTTTGAGGGAAAGTAACAGAGC 57.232 39.130 0.00 0.00 0.00 4.09
3420 5088 5.506708 AGTCAGTAACAGACCCTTGTTTTT 58.493 37.500 0.00 0.00 41.31 1.94
3421 5089 5.112129 AGTCAGTAACAGACCCTTGTTTT 57.888 39.130 0.00 0.00 41.31 2.43
3422 5090 4.704965 GAGTCAGTAACAGACCCTTGTTT 58.295 43.478 0.00 0.00 41.31 2.83
3423 5091 3.243771 CGAGTCAGTAACAGACCCTTGTT 60.244 47.826 0.00 0.00 43.34 2.83
3424 5092 2.296471 CGAGTCAGTAACAGACCCTTGT 59.704 50.000 0.00 0.00 36.68 3.16
3425 5093 2.296471 ACGAGTCAGTAACAGACCCTTG 59.704 50.000 0.00 0.00 36.68 3.61
3426 5094 2.595238 ACGAGTCAGTAACAGACCCTT 58.405 47.619 0.00 0.00 36.68 3.95
3427 5095 2.289592 ACGAGTCAGTAACAGACCCT 57.710 50.000 0.00 0.00 36.68 4.34
3428 5096 3.057734 CAAACGAGTCAGTAACAGACCC 58.942 50.000 0.00 0.00 36.68 4.46
3430 5098 5.401674 CCTTACAAACGAGTCAGTAACAGAC 59.598 44.000 0.00 0.00 36.26 3.51
3431 5099 5.068198 ACCTTACAAACGAGTCAGTAACAGA 59.932 40.000 0.00 0.00 0.00 3.41
3433 5101 5.163530 TGACCTTACAAACGAGTCAGTAACA 60.164 40.000 0.00 0.00 32.75 2.41
3434 5102 5.284079 TGACCTTACAAACGAGTCAGTAAC 58.716 41.667 0.00 0.00 32.75 2.50
3435 5103 5.518848 TGACCTTACAAACGAGTCAGTAA 57.481 39.130 0.00 0.00 32.75 2.24
3436 5104 5.518848 TTGACCTTACAAACGAGTCAGTA 57.481 39.130 0.00 0.00 38.58 2.74
3437 5105 4.395959 TTGACCTTACAAACGAGTCAGT 57.604 40.909 0.00 0.00 38.58 3.41
3440 5108 4.612939 GCCATTTGACCTTACAAACGAGTC 60.613 45.833 0.00 0.00 41.49 3.36
3441 5109 3.252458 GCCATTTGACCTTACAAACGAGT 59.748 43.478 0.00 0.00 41.49 4.18
3442 5110 3.365969 GGCCATTTGACCTTACAAACGAG 60.366 47.826 0.00 0.00 41.49 4.18
3444 5112 2.556622 AGGCCATTTGACCTTACAAACG 59.443 45.455 5.01 0.00 41.49 3.60
3445 5113 3.860754 GCAGGCCATTTGACCTTACAAAC 60.861 47.826 5.01 0.00 41.49 2.93
3448 5116 1.075374 AGCAGGCCATTTGACCTTACA 59.925 47.619 5.01 0.00 32.56 2.41
3449 5117 1.839424 AGCAGGCCATTTGACCTTAC 58.161 50.000 5.01 0.00 32.56 2.34
3451 5119 1.355720 ACTAGCAGGCCATTTGACCTT 59.644 47.619 5.01 0.00 32.56 3.50
3452 5120 0.995024 ACTAGCAGGCCATTTGACCT 59.005 50.000 5.01 0.00 36.45 3.85
3453 5121 1.839424 AACTAGCAGGCCATTTGACC 58.161 50.000 5.01 0.00 0.00 4.02
3454 5122 3.578688 CAAAACTAGCAGGCCATTTGAC 58.421 45.455 5.01 0.00 31.23 3.18
3456 5124 2.562298 TCCAAAACTAGCAGGCCATTTG 59.438 45.455 5.01 0.00 0.00 2.32
3458 5126 2.603075 TCCAAAACTAGCAGGCCATT 57.397 45.000 5.01 0.00 0.00 3.16
3459 5127 2.450476 CTTCCAAAACTAGCAGGCCAT 58.550 47.619 5.01 0.00 0.00 4.40
3461 5129 0.528017 GCTTCCAAAACTAGCAGGCC 59.472 55.000 0.00 0.00 0.00 5.19
3462 5130 1.539157 AGCTTCCAAAACTAGCAGGC 58.461 50.000 0.00 0.00 0.00 4.85
3464 5132 5.181748 ACTCATAGCTTCCAAAACTAGCAG 58.818 41.667 0.00 0.00 0.00 4.24
3465 5133 5.165961 ACTCATAGCTTCCAAAACTAGCA 57.834 39.130 0.00 0.00 0.00 3.49
3467 5135 9.436957 TTTTCTACTCATAGCTTCCAAAACTAG 57.563 33.333 0.00 0.00 0.00 2.57
3469 5137 7.719633 TGTTTTCTACTCATAGCTTCCAAAACT 59.280 33.333 0.00 0.00 34.40 2.66
3470 5138 7.803659 GTGTTTTCTACTCATAGCTTCCAAAAC 59.196 37.037 0.00 0.00 34.15 2.43
3471 5139 7.040686 GGTGTTTTCTACTCATAGCTTCCAAAA 60.041 37.037 0.00 0.00 0.00 2.44
3472 5140 6.430000 GGTGTTTTCTACTCATAGCTTCCAAA 59.570 38.462 0.00 0.00 0.00 3.28
3473 5141 5.938125 GGTGTTTTCTACTCATAGCTTCCAA 59.062 40.000 0.00 0.00 0.00 3.53
3474 5142 5.012664 TGGTGTTTTCTACTCATAGCTTCCA 59.987 40.000 0.00 0.00 0.00 3.53
3475 5143 5.488341 TGGTGTTTTCTACTCATAGCTTCC 58.512 41.667 0.00 0.00 0.00 3.46
3476 5144 6.398918 TCTGGTGTTTTCTACTCATAGCTTC 58.601 40.000 0.00 0.00 0.00 3.86
3478 5146 6.360370 TTCTGGTGTTTTCTACTCATAGCT 57.640 37.500 0.00 0.00 0.00 3.32
3479 5147 6.092807 CCTTTCTGGTGTTTTCTACTCATAGC 59.907 42.308 0.00 0.00 0.00 2.97
3480 5148 7.602517 CCTTTCTGGTGTTTTCTACTCATAG 57.397 40.000 0.00 0.00 0.00 2.23
3496 5164 1.675552 ACACCACGAAACCTTTCTGG 58.324 50.000 11.60 11.60 39.36 3.86
3497 5165 3.463944 ACTACACCACGAAACCTTTCTG 58.536 45.455 0.00 0.00 35.07 3.02
3498 5166 3.832615 ACTACACCACGAAACCTTTCT 57.167 42.857 0.00 0.00 35.07 2.52
3499 5167 3.002965 CCAACTACACCACGAAACCTTTC 59.997 47.826 0.00 0.00 0.00 2.62
3500 5168 2.946990 CCAACTACACCACGAAACCTTT 59.053 45.455 0.00 0.00 0.00 3.11
3501 5169 2.092807 ACCAACTACACCACGAAACCTT 60.093 45.455 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.