Multiple sequence alignment - TraesCS3B01G601900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G601900 chr3B 100.000 2346 0 0 1 2346 822103340 822100995 0.000000e+00 4333
1 TraesCS3B01G601900 chr3A 88.568 831 59 16 560 1387 744280672 744279875 0.000000e+00 976
2 TraesCS3B01G601900 chr3A 84.049 815 85 21 1515 2301 744304141 744303344 0.000000e+00 743
3 TraesCS3B01G601900 chr3A 91.095 539 39 8 560 1096 744304945 744304414 0.000000e+00 721
4 TraesCS3B01G601900 chr3A 85.714 567 52 14 1487 2043 744279880 744279333 2.620000e-159 571
5 TraesCS3B01G601900 chr3A 85.595 479 67 2 83 559 584028625 584028147 3.480000e-138 501
6 TraesCS3B01G601900 chr3A 92.748 262 18 1 1127 1387 744304409 744304148 6.120000e-101 377
7 TraesCS3B01G601900 chr3A 82.818 291 27 10 2033 2301 744279316 744279027 3.010000e-59 239
8 TraesCS3B01G601900 chr3D 89.279 541 40 9 560 1096 610194768 610194242 0.000000e+00 662
9 TraesCS3B01G601900 chr3D 94.208 259 15 0 1127 1385 610194237 610193979 1.690000e-106 396
10 TraesCS3B01G601900 chr3D 88.806 134 13 2 1367 1499 46265919 46266051 1.870000e-36 163
11 TraesCS3B01G601900 chr6D 85.484 496 67 5 67 559 400092389 400091896 1.610000e-141 512
12 TraesCS3B01G601900 chr6D 93.220 118 8 0 1376 1493 289718989 289718872 8.620000e-40 174
13 TraesCS3B01G601900 chr1D 86.105 475 62 4 85 558 439108320 439108791 2.080000e-140 508
14 TraesCS3B01G601900 chr7B 85.863 481 61 7 83 559 35636107 35636584 2.690000e-139 505
15 TraesCS3B01G601900 chr7B 96.330 109 4 0 1382 1490 23007684 23007576 1.850000e-41 180
16 TraesCS3B01G601900 chrUn 85.595 479 65 4 83 559 380756163 380756639 1.250000e-137 499
17 TraesCS3B01G601900 chrUn 95.413 109 5 0 1384 1492 15981933 15981825 8.620000e-40 174
18 TraesCS3B01G601900 chr1A 84.970 499 68 7 65 559 30252688 30253183 1.250000e-137 499
19 TraesCS3B01G601900 chr1A 95.536 112 5 0 1379 1490 523010051 523010162 1.850000e-41 180
20 TraesCS3B01G601900 chr7D 85.625 480 61 7 82 559 91748421 91748894 4.500000e-137 497
21 TraesCS3B01G601900 chr7D 94.737 114 6 0 1379 1492 522160300 522160187 6.660000e-41 178
22 TraesCS3B01G601900 chr4A 84.909 497 70 5 67 559 4623634 4623139 4.500000e-137 497
23 TraesCS3B01G601900 chr1B 83.953 511 72 8 54 559 679233779 679234284 4.530000e-132 481
24 TraesCS3B01G601900 chr1B 97.196 107 3 0 1384 1490 632890129 632890235 5.150000e-42 182
25 TraesCS3B01G601900 chr7A 94.017 117 7 0 1376 1492 97199602 97199718 6.660000e-41 178
26 TraesCS3B01G601900 chr2D 91.270 126 10 1 1376 1500 139026164 139026039 1.110000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G601900 chr3B 822100995 822103340 2345 True 4333.000000 4333 100.000000 1 2346 1 chr3B.!!$R1 2345
1 TraesCS3B01G601900 chr3A 744303344 744304945 1601 True 613.666667 743 89.297333 560 2301 3 chr3A.!!$R3 1741
2 TraesCS3B01G601900 chr3A 744279027 744280672 1645 True 595.333333 976 85.700000 560 2301 3 chr3A.!!$R2 1741
3 TraesCS3B01G601900 chr3D 610193979 610194768 789 True 529.000000 662 91.743500 560 1385 2 chr3D.!!$R1 825
4 TraesCS3B01G601900 chr1B 679233779 679234284 505 False 481.000000 481 83.953000 54 559 1 chr1B.!!$F2 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 522 0.240145 GCGGGTAAAAGAGTGGCAAC 59.76 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1484 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.248870 TGAGCCTTCAAGTTTTTCTCAAC 57.751 39.130 0.00 0.00 0.00 3.18
24 25 4.704540 TGAGCCTTCAAGTTTTTCTCAACA 59.295 37.500 0.00 0.00 0.00 3.33
25 26 5.184864 TGAGCCTTCAAGTTTTTCTCAACAA 59.815 36.000 0.00 0.00 0.00 2.83
26 27 6.036577 AGCCTTCAAGTTTTTCTCAACAAA 57.963 33.333 0.00 0.00 0.00 2.83
27 28 6.463360 AGCCTTCAAGTTTTTCTCAACAAAA 58.537 32.000 0.00 0.00 0.00 2.44
28 29 6.934083 AGCCTTCAAGTTTTTCTCAACAAAAA 59.066 30.769 0.00 0.00 33.72 1.94
29 30 7.607607 AGCCTTCAAGTTTTTCTCAACAAAAAT 59.392 29.630 0.00 0.00 37.52 1.82
30 31 8.236586 GCCTTCAAGTTTTTCTCAACAAAAATT 58.763 29.630 0.00 0.00 37.52 1.82
60 61 6.824305 AAAATTCAAGTGTATCCTCTGGTG 57.176 37.500 0.00 0.00 0.00 4.17
61 62 3.334583 TTCAAGTGTATCCTCTGGTGC 57.665 47.619 0.00 0.00 0.00 5.01
62 63 1.555075 TCAAGTGTATCCTCTGGTGCC 59.445 52.381 0.00 0.00 0.00 5.01
67 68 2.782222 TATCCTCTGGTGCCGTCGC 61.782 63.158 0.00 0.00 0.00 5.19
89 90 1.984570 CGCCCCCACTCTCTGAGAA 60.985 63.158 8.95 0.00 33.32 2.87
94 95 3.054361 GCCCCCACTCTCTGAGAAATTTA 60.054 47.826 8.95 0.00 33.32 1.40
97 98 4.195416 CCCACTCTCTGAGAAATTTAGGC 58.805 47.826 8.95 0.00 33.32 3.93
98 99 4.080638 CCCACTCTCTGAGAAATTTAGGCT 60.081 45.833 8.95 0.00 33.32 4.58
99 100 5.115480 CCACTCTCTGAGAAATTTAGGCTC 58.885 45.833 8.95 0.00 33.32 4.70
103 104 4.407296 TCTCTGAGAAATTTAGGCTCCCTC 59.593 45.833 4.57 0.00 34.61 4.30
104 105 3.133003 TCTGAGAAATTTAGGCTCCCTCG 59.867 47.826 0.00 0.00 34.61 4.63
128 129 2.476320 GGCTTCCATCTTGGCGCTC 61.476 63.158 7.64 0.00 37.47 5.03
129 130 2.476320 GCTTCCATCTTGGCGCTCC 61.476 63.158 7.64 0.00 37.47 4.70
163 164 2.763448 CCTCGGATCTTCAAGACCTCTT 59.237 50.000 0.00 0.00 36.45 2.85
165 166 4.402793 CCTCGGATCTTCAAGACCTCTTTA 59.597 45.833 0.00 0.00 33.11 1.85
179 180 4.879598 ACCTCTTTATTCTTCGTCAACGT 58.120 39.130 2.09 0.00 40.80 3.99
201 202 7.548097 ACGTCTAGTGATCATCATAGTTTTGT 58.452 34.615 0.00 0.00 0.00 2.83
226 227 9.044150 GTGAGAATAGATTTCCTCTCATTCTTG 57.956 37.037 4.11 0.00 44.44 3.02
230 231 5.511386 AGATTTCCTCTCATTCTTGTGGT 57.489 39.130 0.00 0.00 0.00 4.16
231 232 6.627087 AGATTTCCTCTCATTCTTGTGGTA 57.373 37.500 0.00 0.00 0.00 3.25
235 236 3.055819 TCCTCTCATTCTTGTGGTAGTGC 60.056 47.826 0.00 0.00 0.00 4.40
248 249 4.944619 TGGTAGTGCCATGAGATTAGAG 57.055 45.455 0.00 0.00 43.61 2.43
255 256 6.479884 AGTGCCATGAGATTAGAGAGTTTTT 58.520 36.000 0.00 0.00 0.00 1.94
298 301 8.964476 ATTCGGATCTGATAAGTTTATGTTGT 57.036 30.769 4.74 0.00 0.00 3.32
299 302 8.786826 TTCGGATCTGATAAGTTTATGTTGTT 57.213 30.769 4.74 0.00 0.00 2.83
305 308 8.094798 TCTGATAAGTTTATGTTGTTGTGTCC 57.905 34.615 0.00 0.00 0.00 4.02
308 311 7.500892 TGATAAGTTTATGTTGTTGTGTCCAGT 59.499 33.333 0.00 0.00 0.00 4.00
310 313 6.524101 AGTTTATGTTGTTGTGTCCAGTTT 57.476 33.333 0.00 0.00 0.00 2.66
345 348 8.522830 TGTTTGATTCTTTATGGAGGTGAAATC 58.477 33.333 0.00 0.00 0.00 2.17
380 383 7.770897 ACACTATGGTGAAGATAAAGTGATTCC 59.229 37.037 16.98 0.00 45.61 3.01
383 386 5.875224 TGGTGAAGATAAAGTGATTCCACA 58.125 37.500 0.00 0.00 45.54 4.17
384 387 6.303054 TGGTGAAGATAAAGTGATTCCACAA 58.697 36.000 0.00 0.00 45.54 3.33
385 388 6.947733 TGGTGAAGATAAAGTGATTCCACAAT 59.052 34.615 0.00 0.00 45.54 2.71
397 400 5.412594 GTGATTCCACAATCTGCACTTCTAA 59.587 40.000 0.00 0.00 42.72 2.10
399 402 4.890158 TCCACAATCTGCACTTCTAAGA 57.110 40.909 0.00 0.00 0.00 2.10
400 403 4.825422 TCCACAATCTGCACTTCTAAGAG 58.175 43.478 0.00 0.00 0.00 2.85
408 411 5.207354 TCTGCACTTCTAAGAGATCATCCT 58.793 41.667 0.00 0.00 0.00 3.24
411 414 4.558496 GCACTTCTAAGAGATCATCCTCGG 60.558 50.000 0.00 0.00 38.19 4.63
412 415 4.022416 CACTTCTAAGAGATCATCCTCGGG 60.022 50.000 0.00 0.00 38.19 5.14
413 416 2.520069 TCTAAGAGATCATCCTCGGGC 58.480 52.381 0.00 0.00 38.19 6.13
419 422 0.533755 GATCATCCTCGGGCCAAGTG 60.534 60.000 4.39 0.00 0.00 3.16
420 423 1.274703 ATCATCCTCGGGCCAAGTGT 61.275 55.000 4.39 0.00 0.00 3.55
428 431 0.888736 CGGGCCAAGTGTGTTCATCA 60.889 55.000 4.39 0.00 0.00 3.07
444 447 4.794311 TCATCAATCAAGGCTTCCCATA 57.206 40.909 0.00 0.00 0.00 2.74
446 449 5.708544 TCATCAATCAAGGCTTCCCATATT 58.291 37.500 0.00 0.00 0.00 1.28
450 453 6.877236 TCAATCAAGGCTTCCCATATTTTTC 58.123 36.000 0.00 0.00 0.00 2.29
451 454 5.876651 ATCAAGGCTTCCCATATTTTTCC 57.123 39.130 0.00 0.00 0.00 3.13
468 472 1.133181 TCCATGGGTGACTCAAGGCA 61.133 55.000 13.02 0.00 0.00 4.75
505 509 0.607112 TGGTAATGTTCGTGCGGGTA 59.393 50.000 0.00 0.00 0.00 3.69
514 518 0.320073 TCGTGCGGGTAAAAGAGTGG 60.320 55.000 0.00 0.00 0.00 4.00
518 522 0.240145 GCGGGTAAAAGAGTGGCAAC 59.760 55.000 0.00 0.00 0.00 4.17
534 538 0.798776 CAACATCGTTGCTCCAGTCC 59.201 55.000 0.00 0.00 0.00 3.85
543 547 0.401356 TGCTCCAGTCCAATTGCAGA 59.599 50.000 0.00 0.00 0.00 4.26
591 595 6.988580 TGAATTTCAATGCACAATGGTGTTTA 59.011 30.769 1.31 0.00 46.95 2.01
593 597 5.528043 TTCAATGCACAATGGTGTTTACT 57.472 34.783 1.31 0.00 46.95 2.24
594 598 4.869215 TCAATGCACAATGGTGTTTACTG 58.131 39.130 1.31 0.00 46.95 2.74
611 615 7.011669 GTGTTTACTGTTAAAGTGGCTAGACAA 59.988 37.037 0.00 0.00 40.26 3.18
652 656 5.645624 CATGTTTTATTAATGTCACCGGCA 58.354 37.500 0.00 0.00 0.00 5.69
828 835 4.081420 TGACTCACCTCTATCTCTTTTGCC 60.081 45.833 0.00 0.00 0.00 4.52
900 907 9.884814 AAGTCTATATAAGATAACACTCCAGGT 57.115 33.333 0.00 0.00 36.36 4.00
928 935 7.410174 TCCAAGACATAAACATTAGTCCCATT 58.590 34.615 0.00 0.00 0.00 3.16
940 947 7.330262 ACATTAGTCCCATTGCCAAATTAAAG 58.670 34.615 0.00 0.00 0.00 1.85
955 962 7.445836 CCAAATTAAAGTAGACGAAGAGAACG 58.554 38.462 0.00 0.00 0.00 3.95
972 980 6.831976 AGAGAACGCATATTTTCCTTCCTAT 58.168 36.000 0.00 0.00 0.00 2.57
973 981 7.963532 AGAGAACGCATATTTTCCTTCCTATA 58.036 34.615 0.00 0.00 0.00 1.31
974 982 8.091449 AGAGAACGCATATTTTCCTTCCTATAG 58.909 37.037 0.00 0.00 0.00 1.31
975 983 7.963532 AGAACGCATATTTTCCTTCCTATAGA 58.036 34.615 0.00 0.00 0.00 1.98
1047 1057 0.323087 TCCTCGTGGTGCTAGCACTA 60.323 55.000 38.82 33.81 43.87 2.74
1116 1126 7.784633 AACATAATGGTTTGTGTTTTCTTGG 57.215 32.000 0.00 0.00 42.41 3.61
1117 1127 6.883744 ACATAATGGTTTGTGTTTTCTTGGT 58.116 32.000 0.00 0.00 33.90 3.67
1118 1128 6.760770 ACATAATGGTTTGTGTTTTCTTGGTG 59.239 34.615 0.00 0.00 33.90 4.17
1119 1129 3.601443 TGGTTTGTGTTTTCTTGGTGG 57.399 42.857 0.00 0.00 0.00 4.61
1120 1130 2.900546 TGGTTTGTGTTTTCTTGGTGGT 59.099 40.909 0.00 0.00 0.00 4.16
1121 1131 3.258228 GGTTTGTGTTTTCTTGGTGGTG 58.742 45.455 0.00 0.00 0.00 4.17
1122 1132 2.663826 TTGTGTTTTCTTGGTGGTGC 57.336 45.000 0.00 0.00 0.00 5.01
1123 1133 1.846007 TGTGTTTTCTTGGTGGTGCT 58.154 45.000 0.00 0.00 0.00 4.40
1124 1134 1.476085 TGTGTTTTCTTGGTGGTGCTG 59.524 47.619 0.00 0.00 0.00 4.41
1125 1135 0.459489 TGTTTTCTTGGTGGTGCTGC 59.541 50.000 0.00 0.00 0.00 5.25
1144 1155 5.310594 TGCTGCTAATCTAATCTAATGGGGT 59.689 40.000 0.00 0.00 0.00 4.95
1150 1161 7.231519 GCTAATCTAATCTAATGGGGTTTTGCT 59.768 37.037 0.00 0.00 0.00 3.91
1201 1213 4.829064 TTCTTGGTGTTGTGCAGATAAC 57.171 40.909 0.00 0.00 0.00 1.89
1246 1258 0.752658 AGTTTTTCTGCACCAAGCCC 59.247 50.000 0.00 0.00 44.83 5.19
1293 1305 0.392461 GCACGTGATAGGAAGGGCAA 60.392 55.000 22.23 0.00 0.00 4.52
1387 1399 8.770828 CAGAGACTGAAATACTAGCTAGTACTC 58.229 40.741 31.06 27.11 36.28 2.59
1388 1400 7.935210 AGAGACTGAAATACTAGCTAGTACTCC 59.065 40.741 31.06 22.26 41.18 3.85
1389 1401 6.999871 AGACTGAAATACTAGCTAGTACTCCC 59.000 42.308 31.06 20.82 41.18 4.30
1391 1403 6.999871 ACTGAAATACTAGCTAGTACTCCCTC 59.000 42.308 31.06 21.94 41.18 4.30
1393 1405 5.926580 AATACTAGCTAGTACTCCCTCCA 57.073 43.478 31.06 12.08 41.18 3.86
1394 1406 6.471942 AATACTAGCTAGTACTCCCTCCAT 57.528 41.667 31.06 13.74 41.18 3.41
1395 1407 4.817874 ACTAGCTAGTACTCCCTCCATT 57.182 45.455 24.97 0.00 34.13 3.16
1396 1408 5.145513 ACTAGCTAGTACTCCCTCCATTT 57.854 43.478 24.97 0.00 34.13 2.32
1397 1409 4.896482 ACTAGCTAGTACTCCCTCCATTTG 59.104 45.833 24.97 0.00 34.13 2.32
1398 1410 3.041946 AGCTAGTACTCCCTCCATTTGG 58.958 50.000 0.00 0.00 0.00 3.28
1399 1411 3.039011 GCTAGTACTCCCTCCATTTGGA 58.961 50.000 0.00 0.00 43.08 3.53
1400 1412 3.454812 GCTAGTACTCCCTCCATTTGGAA 59.545 47.826 0.00 0.00 44.91 3.53
1401 1413 4.103311 GCTAGTACTCCCTCCATTTGGAAT 59.897 45.833 0.00 0.00 44.91 3.01
1402 1414 5.398012 GCTAGTACTCCCTCCATTTGGAATT 60.398 44.000 0.00 0.00 44.91 2.17
1403 1415 6.183361 GCTAGTACTCCCTCCATTTGGAATTA 60.183 42.308 0.00 0.00 44.91 1.40
1404 1416 6.002653 AGTACTCCCTCCATTTGGAATTAC 57.997 41.667 0.18 0.00 44.91 1.89
1405 1417 5.731678 AGTACTCCCTCCATTTGGAATTACT 59.268 40.000 0.18 0.00 44.91 2.24
1406 1418 5.536497 ACTCCCTCCATTTGGAATTACTT 57.464 39.130 0.18 0.00 44.91 2.24
1407 1419 6.652205 ACTCCCTCCATTTGGAATTACTTA 57.348 37.500 0.18 0.00 44.91 2.24
1408 1420 7.226059 ACTCCCTCCATTTGGAATTACTTAT 57.774 36.000 0.18 0.00 44.91 1.73
1409 1421 7.290813 ACTCCCTCCATTTGGAATTACTTATC 58.709 38.462 0.18 0.00 44.91 1.75
1410 1422 6.296026 TCCCTCCATTTGGAATTACTTATCG 58.704 40.000 0.18 0.00 44.91 2.92
1411 1423 5.048713 CCCTCCATTTGGAATTACTTATCGC 60.049 44.000 0.18 0.00 44.91 4.58
1412 1424 5.334105 CCTCCATTTGGAATTACTTATCGCG 60.334 44.000 0.00 0.00 44.91 5.87
1413 1425 5.361427 TCCATTTGGAATTACTTATCGCGA 58.639 37.500 13.09 13.09 42.18 5.87
1414 1426 5.818336 TCCATTTGGAATTACTTATCGCGAA 59.182 36.000 15.24 0.00 42.18 4.70
1415 1427 6.316640 TCCATTTGGAATTACTTATCGCGAAA 59.683 34.615 15.24 1.87 42.18 3.46
1416 1428 6.970043 CCATTTGGAATTACTTATCGCGAAAA 59.030 34.615 15.24 4.62 37.39 2.29
1417 1429 7.647715 CCATTTGGAATTACTTATCGCGAAAAT 59.352 33.333 15.24 7.04 37.39 1.82
1418 1430 7.962934 TTTGGAATTACTTATCGCGAAAATG 57.037 32.000 15.24 9.48 0.00 2.32
1419 1431 6.055231 TGGAATTACTTATCGCGAAAATGG 57.945 37.500 15.24 4.60 0.00 3.16
1420 1432 5.818336 TGGAATTACTTATCGCGAAAATGGA 59.182 36.000 15.24 0.09 0.00 3.41
1421 1433 6.485313 TGGAATTACTTATCGCGAAAATGGAT 59.515 34.615 15.24 0.80 0.00 3.41
1422 1434 6.797033 GGAATTACTTATCGCGAAAATGGATG 59.203 38.462 15.24 0.22 0.00 3.51
1423 1435 6.861065 ATTACTTATCGCGAAAATGGATGT 57.139 33.333 15.24 6.50 0.00 3.06
1424 1436 7.956420 ATTACTTATCGCGAAAATGGATGTA 57.044 32.000 15.24 5.52 0.00 2.29
1425 1437 7.956420 TTACTTATCGCGAAAATGGATGTAT 57.044 32.000 15.24 0.00 0.00 2.29
1426 1438 6.467723 ACTTATCGCGAAAATGGATGTATC 57.532 37.500 15.24 0.00 0.00 2.24
1427 1439 6.223852 ACTTATCGCGAAAATGGATGTATCT 58.776 36.000 15.24 0.00 0.00 1.98
1428 1440 7.375834 ACTTATCGCGAAAATGGATGTATCTA 58.624 34.615 15.24 0.00 0.00 1.98
1429 1441 7.542477 ACTTATCGCGAAAATGGATGTATCTAG 59.458 37.037 15.24 0.00 0.00 2.43
1430 1442 5.447624 TCGCGAAAATGGATGTATCTAGA 57.552 39.130 6.20 0.00 0.00 2.43
1431 1443 5.220381 TCGCGAAAATGGATGTATCTAGAC 58.780 41.667 6.20 0.00 0.00 2.59
1432 1444 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
1433 1445 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
1434 1446 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
1435 1447 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
1436 1448 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
1437 1449 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
1475 1487 9.696917 ACATTCATTTTCAAGACAAGTAATTCC 57.303 29.630 0.00 0.00 0.00 3.01
1476 1488 8.853345 CATTCATTTTCAAGACAAGTAATTCCG 58.147 33.333 0.00 0.00 0.00 4.30
1477 1489 7.737972 TCATTTTCAAGACAAGTAATTCCGA 57.262 32.000 0.00 0.00 0.00 4.55
1478 1490 8.160521 TCATTTTCAAGACAAGTAATTCCGAA 57.839 30.769 0.00 0.00 0.00 4.30
1479 1491 8.073768 TCATTTTCAAGACAAGTAATTCCGAAC 58.926 33.333 0.00 0.00 0.00 3.95
1480 1492 5.585500 TTCAAGACAAGTAATTCCGAACG 57.415 39.130 0.00 0.00 0.00 3.95
1481 1493 3.991773 TCAAGACAAGTAATTCCGAACGG 59.008 43.478 6.94 6.94 0.00 4.44
1482 1494 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
1483 1495 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1484 1496 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1485 1497 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1486 1498 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1487 1499 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1488 1500 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1489 1501 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1490 1502 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
1491 1503 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
1492 1504 0.038744 TCCGAACGGAGGGAGTACTT 59.961 55.000 12.04 0.00 39.76 2.24
1493 1505 0.172803 CCGAACGGAGGGAGTACTTG 59.827 60.000 7.53 0.00 37.50 3.16
1494 1506 0.886563 CGAACGGAGGGAGTACTTGT 59.113 55.000 0.00 0.00 0.00 3.16
1495 1507 1.271656 CGAACGGAGGGAGTACTTGTT 59.728 52.381 0.00 0.00 0.00 2.83
1496 1508 2.489329 CGAACGGAGGGAGTACTTGTTA 59.511 50.000 0.00 0.00 0.00 2.41
1497 1509 3.427233 CGAACGGAGGGAGTACTTGTTAG 60.427 52.174 0.00 0.00 0.00 2.34
1498 1510 2.454538 ACGGAGGGAGTACTTGTTAGG 58.545 52.381 0.00 0.00 0.00 2.69
1499 1511 1.136500 CGGAGGGAGTACTTGTTAGGC 59.864 57.143 0.00 0.00 0.00 3.93
1500 1512 1.136500 GGAGGGAGTACTTGTTAGGCG 59.864 57.143 0.00 0.00 0.00 5.52
1501 1513 1.136500 GAGGGAGTACTTGTTAGGCGG 59.864 57.143 0.00 0.00 0.00 6.13
1502 1514 0.900421 GGGAGTACTTGTTAGGCGGT 59.100 55.000 0.00 0.00 0.00 5.68
1503 1515 2.102578 GGGAGTACTTGTTAGGCGGTA 58.897 52.381 0.00 0.00 0.00 4.02
1504 1516 2.159184 GGGAGTACTTGTTAGGCGGTAC 60.159 54.545 0.00 0.00 35.97 3.34
1505 1517 2.757314 GGAGTACTTGTTAGGCGGTACT 59.243 50.000 0.00 0.00 44.76 2.73
1506 1518 3.194329 GGAGTACTTGTTAGGCGGTACTT 59.806 47.826 0.00 0.00 42.97 2.24
1507 1519 4.399303 GGAGTACTTGTTAGGCGGTACTTA 59.601 45.833 0.00 0.00 42.97 2.24
1508 1520 5.316327 AGTACTTGTTAGGCGGTACTTAC 57.684 43.478 0.00 0.00 41.02 2.34
1509 1521 5.012893 AGTACTTGTTAGGCGGTACTTACT 58.987 41.667 0.00 0.00 41.02 2.24
1510 1522 4.879197 ACTTGTTAGGCGGTACTTACTT 57.121 40.909 0.00 0.00 0.00 2.24
1511 1523 4.814147 ACTTGTTAGGCGGTACTTACTTC 58.186 43.478 0.00 0.00 0.00 3.01
1512 1524 4.281688 ACTTGTTAGGCGGTACTTACTTCA 59.718 41.667 0.00 0.00 0.00 3.02
1513 1525 4.445452 TGTTAGGCGGTACTTACTTCAG 57.555 45.455 0.00 0.00 0.00 3.02
1526 1554 5.070685 ACTTACTTCAGGATGGACCAAAAC 58.929 41.667 0.00 0.00 42.04 2.43
1538 1566 7.068593 AGGATGGACCAAAACATGTTATGTATG 59.931 37.037 12.39 6.42 41.37 2.39
1568 1596 8.677300 TCATATTGAGAGCAAGGAATAAACAAC 58.323 33.333 0.00 0.00 37.45 3.32
1615 1643 2.610438 ATTTGGAAGCCATGTGGAGT 57.390 45.000 2.55 0.00 37.39 3.85
1628 1656 1.069513 TGTGGAGTCGGTCGATGTTTT 59.930 47.619 0.00 0.00 0.00 2.43
1642 1670 7.960738 CGGTCGATGTTTTATTGTTCACTTATT 59.039 33.333 0.00 0.00 0.00 1.40
1708 1736 8.852671 AACCATTGGGAATTAAAGGATTATCA 57.147 30.769 7.78 0.00 38.05 2.15
1712 1740 9.971922 CATTGGGAATTAAAGGATTATCAAGTC 57.028 33.333 0.00 0.00 0.00 3.01
1743 1771 9.388506 CTTATTGGATCTATCAAGTTGAACTGT 57.611 33.333 10.14 0.00 0.00 3.55
1761 1789 6.712998 TGAACTGTATGCTTTAGTTAGGCAAA 59.287 34.615 0.00 0.00 39.46 3.68
1780 1810 7.908453 AGGCAAATCCTAACTACATATAGACC 58.092 38.462 0.00 0.00 45.41 3.85
1805 1835 3.490348 AGTTCAACAAGGGATTGGACTG 58.510 45.455 0.00 0.00 43.05 3.51
1826 1856 0.958822 ATTGGTTTCGTCAGCCAACC 59.041 50.000 7.60 0.00 43.93 3.77
1827 1857 1.104577 TTGGTTTCGTCAGCCAACCC 61.105 55.000 2.41 0.00 39.50 4.11
1835 1865 2.203280 CAGCCAACCCGGTGTTCA 60.203 61.111 0.00 0.00 34.00 3.18
1846 1876 1.197721 CCGGTGTTCAGTTGCAATCTC 59.802 52.381 0.59 0.00 0.00 2.75
1847 1877 1.872952 CGGTGTTCAGTTGCAATCTCA 59.127 47.619 0.59 0.00 0.00 3.27
1849 1879 3.141398 GGTGTTCAGTTGCAATCTCAGA 58.859 45.455 0.59 0.00 0.00 3.27
1850 1880 3.058639 GGTGTTCAGTTGCAATCTCAGAC 60.059 47.826 0.59 0.00 0.00 3.51
1851 1881 3.812053 GTGTTCAGTTGCAATCTCAGACT 59.188 43.478 0.59 0.00 0.00 3.24
1901 1938 8.553459 AATACACTTACTTTGGTTCATCTCAG 57.447 34.615 0.00 0.00 0.00 3.35
1913 1950 4.953579 GGTTCATCTCAGACTCTACTCCTT 59.046 45.833 0.00 0.00 0.00 3.36
1915 1952 3.951037 TCATCTCAGACTCTACTCCTTGC 59.049 47.826 0.00 0.00 0.00 4.01
1920 1957 2.168106 CAGACTCTACTCCTTGCAGCAT 59.832 50.000 0.00 0.00 0.00 3.79
1924 1961 5.046304 AGACTCTACTCCTTGCAGCATTTTA 60.046 40.000 0.00 0.00 0.00 1.52
1925 1962 4.938226 ACTCTACTCCTTGCAGCATTTTAC 59.062 41.667 0.00 0.00 0.00 2.01
1926 1963 5.165961 TCTACTCCTTGCAGCATTTTACT 57.834 39.130 0.00 0.00 0.00 2.24
1927 1964 6.070767 ACTCTACTCCTTGCAGCATTTTACTA 60.071 38.462 0.00 0.00 0.00 1.82
1928 1965 6.106673 TCTACTCCTTGCAGCATTTTACTAC 58.893 40.000 0.00 0.00 0.00 2.73
1929 1966 4.911390 ACTCCTTGCAGCATTTTACTACT 58.089 39.130 0.00 0.00 0.00 2.57
1930 1967 5.316987 ACTCCTTGCAGCATTTTACTACTT 58.683 37.500 0.00 0.00 0.00 2.24
1931 1968 6.472887 ACTCCTTGCAGCATTTTACTACTTA 58.527 36.000 0.00 0.00 0.00 2.24
1932 1969 6.595716 ACTCCTTGCAGCATTTTACTACTTAG 59.404 38.462 0.00 0.00 0.00 2.18
1933 1970 6.472887 TCCTTGCAGCATTTTACTACTTAGT 58.527 36.000 0.00 0.00 40.24 2.24
1934 1971 6.940298 TCCTTGCAGCATTTTACTACTTAGTT 59.060 34.615 0.00 0.00 37.73 2.24
1935 1972 7.023575 CCTTGCAGCATTTTACTACTTAGTTG 58.976 38.462 0.00 0.00 37.73 3.16
1936 1973 5.938322 TGCAGCATTTTACTACTTAGTTGC 58.062 37.500 0.00 3.55 36.87 4.17
1937 1974 5.471797 TGCAGCATTTTACTACTTAGTTGCA 59.528 36.000 11.51 8.75 38.27 4.08
1938 1975 6.016693 TGCAGCATTTTACTACTTAGTTGCAA 60.017 34.615 11.51 0.00 37.23 4.08
1939 1976 7.029563 GCAGCATTTTACTACTTAGTTGCAAT 58.970 34.615 0.59 0.00 38.27 3.56
1940 1977 8.181573 GCAGCATTTTACTACTTAGTTGCAATA 58.818 33.333 0.59 0.00 38.27 1.90
1943 1980 9.503427 GCATTTTACTACTTAGTTGCAATAAGG 57.497 33.333 21.89 10.74 36.71 2.69
1948 1985 9.609346 TTACTACTTAGTTGCAATAAGGGATTC 57.391 33.333 21.89 2.81 37.73 2.52
1959 1996 5.504665 GCAATAAGGGATTCAACTCGACATG 60.505 44.000 0.00 0.00 0.00 3.21
2027 2065 2.225091 TGCAATCTTGGGTGGAATCACT 60.225 45.455 0.00 0.00 43.17 3.41
2036 2101 4.104086 TGGGTGGAATCACTCACTAGAAT 58.896 43.478 0.00 0.00 46.50 2.40
2083 2148 6.664714 TCTAGCCTATGTCAAACTCTACTCT 58.335 40.000 0.00 0.00 0.00 3.24
2114 2179 1.795768 TGCTCTTGAGTTGTAAGCGG 58.204 50.000 0.00 0.00 35.74 5.52
2139 2204 7.581011 CAATGAGTTGCCTTTTATTTGTACC 57.419 36.000 0.00 0.00 0.00 3.34
2141 2206 4.163552 GAGTTGCCTTTTATTTGTACCGC 58.836 43.478 0.00 0.00 0.00 5.68
2193 2258 4.952460 ACTACTGGTTGTGTACAATTCGT 58.048 39.130 0.00 1.89 38.24 3.85
2198 2263 3.242903 TGGTTGTGTACAATTCGTTGCAG 60.243 43.478 0.00 0.00 38.24 4.41
2202 2267 1.804151 TGTACAATTCGTTGCAGAGGC 59.196 47.619 0.00 0.00 41.68 4.70
2203 2268 2.076863 GTACAATTCGTTGCAGAGGCT 58.923 47.619 0.00 0.00 41.91 4.58
2204 2269 1.609208 ACAATTCGTTGCAGAGGCTT 58.391 45.000 0.00 0.00 41.91 4.35
2208 2282 1.165907 TTCGTTGCAGAGGCTTGTGG 61.166 55.000 0.00 0.00 41.91 4.17
2210 2284 1.228245 GTTGCAGAGGCTTGTGGGA 60.228 57.895 0.00 0.00 41.91 4.37
2216 2290 4.617595 AGGCTTGTGGGAGGGGGT 62.618 66.667 0.00 0.00 0.00 4.95
2236 2323 2.237643 GTGGGGGTGTTTGGTTTCTTTT 59.762 45.455 0.00 0.00 0.00 2.27
2261 2348 3.320541 TGGATCAAGGCAACGACAATTTT 59.679 39.130 0.00 0.00 46.39 1.82
2262 2349 3.920412 GGATCAAGGCAACGACAATTTTC 59.080 43.478 0.00 0.00 46.39 2.29
2264 2351 4.223320 TCAAGGCAACGACAATTTTCTC 57.777 40.909 0.00 0.00 46.39 2.87
2265 2352 2.969443 AGGCAACGACAATTTTCTCG 57.031 45.000 0.00 0.00 46.39 4.04
2296 2383 1.150827 GGTACACCACTGCCGTTTAC 58.849 55.000 0.00 0.00 35.64 2.01
2301 2388 2.691011 ACACCACTGCCGTTTACAAAAT 59.309 40.909 0.00 0.00 0.00 1.82
2302 2389 3.049206 CACCACTGCCGTTTACAAAATG 58.951 45.455 0.00 0.00 0.00 2.32
2303 2390 2.952978 ACCACTGCCGTTTACAAAATGA 59.047 40.909 0.00 0.00 0.00 2.57
2304 2391 3.004315 ACCACTGCCGTTTACAAAATGAG 59.996 43.478 0.00 0.00 0.00 2.90
2305 2392 3.564511 CACTGCCGTTTACAAAATGAGG 58.435 45.455 0.00 0.00 0.00 3.86
2306 2393 3.252215 CACTGCCGTTTACAAAATGAGGA 59.748 43.478 0.00 0.00 0.00 3.71
2307 2394 3.252458 ACTGCCGTTTACAAAATGAGGAC 59.748 43.478 0.00 0.00 0.00 3.85
2308 2395 3.482436 TGCCGTTTACAAAATGAGGACT 58.518 40.909 0.00 0.00 0.00 3.85
2309 2396 3.886505 TGCCGTTTACAAAATGAGGACTT 59.113 39.130 0.00 0.00 0.00 3.01
2310 2397 4.339814 TGCCGTTTACAAAATGAGGACTTT 59.660 37.500 0.00 0.00 0.00 2.66
2311 2398 5.163499 TGCCGTTTACAAAATGAGGACTTTT 60.163 36.000 0.00 0.00 0.00 2.27
2312 2399 6.039493 TGCCGTTTACAAAATGAGGACTTTTA 59.961 34.615 0.00 0.00 0.00 1.52
2313 2400 6.919115 GCCGTTTACAAAATGAGGACTTTTAA 59.081 34.615 0.00 0.00 0.00 1.52
2314 2401 7.597369 GCCGTTTACAAAATGAGGACTTTTAAT 59.403 33.333 0.00 0.00 0.00 1.40
2315 2402 9.124807 CCGTTTACAAAATGAGGACTTTTAATC 57.875 33.333 0.00 0.00 0.00 1.75
2316 2403 9.893305 CGTTTACAAAATGAGGACTTTTAATCT 57.107 29.630 0.00 0.00 0.00 2.40
2321 2408 9.232473 ACAAAATGAGGACTTTTAATCTAGACC 57.768 33.333 0.00 0.00 0.00 3.85
2322 2409 9.231297 CAAAATGAGGACTTTTAATCTAGACCA 57.769 33.333 0.00 0.00 0.00 4.02
2323 2410 8.794335 AAATGAGGACTTTTAATCTAGACCAC 57.206 34.615 0.00 0.00 0.00 4.16
2324 2411 7.741554 ATGAGGACTTTTAATCTAGACCACT 57.258 36.000 0.00 0.00 0.00 4.00
2325 2412 6.936279 TGAGGACTTTTAATCTAGACCACTG 58.064 40.000 0.00 0.00 0.00 3.66
2326 2413 5.735766 AGGACTTTTAATCTAGACCACTGC 58.264 41.667 0.00 0.00 0.00 4.40
2327 2414 4.876679 GGACTTTTAATCTAGACCACTGCC 59.123 45.833 0.00 0.00 0.00 4.85
2328 2415 4.504858 ACTTTTAATCTAGACCACTGCCG 58.495 43.478 0.00 0.00 0.00 5.69
2329 2416 4.020485 ACTTTTAATCTAGACCACTGCCGT 60.020 41.667 0.00 0.00 0.00 5.68
2330 2417 4.546829 TTTAATCTAGACCACTGCCGTT 57.453 40.909 0.00 0.00 0.00 4.44
2331 2418 4.546829 TTAATCTAGACCACTGCCGTTT 57.453 40.909 0.00 0.00 0.00 3.60
2332 2419 5.664294 TTAATCTAGACCACTGCCGTTTA 57.336 39.130 0.00 0.00 0.00 2.01
2333 2420 3.521947 ATCTAGACCACTGCCGTTTAC 57.478 47.619 0.00 0.00 0.00 2.01
2334 2421 2.241160 TCTAGACCACTGCCGTTTACA 58.759 47.619 0.00 0.00 0.00 2.41
2335 2422 2.629137 TCTAGACCACTGCCGTTTACAA 59.371 45.455 0.00 0.00 0.00 2.41
2336 2423 2.335316 AGACCACTGCCGTTTACAAA 57.665 45.000 0.00 0.00 0.00 2.83
2337 2424 2.645802 AGACCACTGCCGTTTACAAAA 58.354 42.857 0.00 0.00 0.00 2.44
2338 2425 3.219281 AGACCACTGCCGTTTACAAAAT 58.781 40.909 0.00 0.00 0.00 1.82
2339 2426 3.004315 AGACCACTGCCGTTTACAAAATG 59.996 43.478 0.00 0.00 0.00 2.32
2340 2427 2.952978 ACCACTGCCGTTTACAAAATGA 59.047 40.909 0.00 0.00 0.00 2.57
2341 2428 3.004315 ACCACTGCCGTTTACAAAATGAG 59.996 43.478 0.00 0.00 0.00 2.90
2342 2429 3.564511 CACTGCCGTTTACAAAATGAGG 58.435 45.455 0.00 0.00 0.00 3.86
2343 2430 3.252215 CACTGCCGTTTACAAAATGAGGA 59.748 43.478 0.00 0.00 0.00 3.71
2344 2431 3.502211 ACTGCCGTTTACAAAATGAGGAG 59.498 43.478 0.00 0.00 0.00 3.69
2345 2432 3.482436 TGCCGTTTACAAAATGAGGAGT 58.518 40.909 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.360714 TGTTGAGAAAAACTTGAAGGCTCAT 59.639 36.000 0.00 0.00 31.80 2.90
2 3 5.248870 TGTTGAGAAAAACTTGAAGGCTC 57.751 39.130 0.00 0.00 0.00 4.70
3 4 5.659440 TTGTTGAGAAAAACTTGAAGGCT 57.341 34.783 0.00 0.00 0.00 4.58
4 5 6.720012 TTTTGTTGAGAAAAACTTGAAGGC 57.280 33.333 0.00 0.00 0.00 4.35
36 37 6.294731 GCACCAGAGGATACACTTGAATTTTT 60.295 38.462 0.00 0.00 34.16 1.94
37 38 5.183904 GCACCAGAGGATACACTTGAATTTT 59.816 40.000 0.00 0.00 34.16 1.82
38 39 4.702131 GCACCAGAGGATACACTTGAATTT 59.298 41.667 0.00 0.00 34.16 1.82
39 40 4.265073 GCACCAGAGGATACACTTGAATT 58.735 43.478 0.00 0.00 34.16 2.17
40 41 3.370953 GGCACCAGAGGATACACTTGAAT 60.371 47.826 0.00 0.00 34.16 2.57
41 42 2.027192 GGCACCAGAGGATACACTTGAA 60.027 50.000 0.00 0.00 34.16 2.69
42 43 1.555075 GGCACCAGAGGATACACTTGA 59.445 52.381 0.00 0.00 34.16 3.02
43 44 1.740380 CGGCACCAGAGGATACACTTG 60.740 57.143 0.00 0.00 34.16 3.16
44 45 0.537188 CGGCACCAGAGGATACACTT 59.463 55.000 0.00 0.00 34.16 3.16
45 46 0.614979 ACGGCACCAGAGGATACACT 60.615 55.000 0.00 0.00 38.40 3.55
46 47 0.179108 GACGGCACCAGAGGATACAC 60.179 60.000 0.00 0.00 41.41 2.90
47 48 1.663379 CGACGGCACCAGAGGATACA 61.663 60.000 0.00 0.00 41.41 2.29
48 49 1.065928 CGACGGCACCAGAGGATAC 59.934 63.158 0.00 0.00 0.00 2.24
49 50 2.782222 GCGACGGCACCAGAGGATA 61.782 63.158 0.00 0.00 39.62 2.59
50 51 4.148825 GCGACGGCACCAGAGGAT 62.149 66.667 0.00 0.00 39.62 3.24
70 71 3.465403 CTCAGAGAGTGGGGGCGG 61.465 72.222 0.00 0.00 0.00 6.13
73 74 3.728385 AAATTTCTCAGAGAGTGGGGG 57.272 47.619 0.00 0.00 0.00 5.40
75 76 4.080638 AGCCTAAATTTCTCAGAGAGTGGG 60.081 45.833 0.00 1.10 0.00 4.61
78 79 4.163268 GGGAGCCTAAATTTCTCAGAGAGT 59.837 45.833 0.00 0.00 0.00 3.24
80 81 4.366267 AGGGAGCCTAAATTTCTCAGAGA 58.634 43.478 0.00 0.00 28.47 3.10
81 82 4.702831 GAGGGAGCCTAAATTTCTCAGAG 58.297 47.826 0.00 0.00 31.76 3.35
109 110 3.880846 GCGCCAAGATGGAAGCCG 61.881 66.667 0.00 0.00 40.96 5.52
110 111 2.439156 AGCGCCAAGATGGAAGCC 60.439 61.111 2.29 0.00 40.96 4.35
111 112 2.476320 GGAGCGCCAAGATGGAAGC 61.476 63.158 2.29 4.98 40.96 3.86
114 115 3.074369 TCGGAGCGCCAAGATGGA 61.074 61.111 7.44 0.00 40.96 3.41
142 143 2.383855 AGAGGTCTTGAAGATCCGAGG 58.616 52.381 1.04 0.00 0.00 4.63
163 164 6.245115 TCACTAGACGTTGACGAAGAATAA 57.755 37.500 10.87 0.00 43.02 1.40
165 166 4.761235 TCACTAGACGTTGACGAAGAAT 57.239 40.909 10.87 0.00 43.02 2.40
179 180 8.971073 TCTCACAAAACTATGATGATCACTAGA 58.029 33.333 14.51 0.00 0.00 2.43
201 202 8.766476 ACAAGAATGAGAGGAAATCTATTCTCA 58.234 33.333 5.61 5.61 46.98 3.27
209 210 6.314896 CACTACCACAAGAATGAGAGGAAATC 59.685 42.308 0.00 0.00 0.00 2.17
213 214 3.055819 GCACTACCACAAGAATGAGAGGA 60.056 47.826 0.00 0.00 0.00 3.71
230 231 6.798427 AAACTCTCTAATCTCATGGCACTA 57.202 37.500 0.00 0.00 0.00 2.74
231 232 5.690464 AAACTCTCTAATCTCATGGCACT 57.310 39.130 0.00 0.00 0.00 4.40
286 289 6.524101 AACTGGACACAACAACATAAACTT 57.476 33.333 0.00 0.00 0.00 2.66
316 319 8.421249 TCACCTCCATAAAGAATCAAACAAAT 57.579 30.769 0.00 0.00 0.00 2.32
319 322 7.831691 TTTCACCTCCATAAAGAATCAAACA 57.168 32.000 0.00 0.00 0.00 2.83
345 348 7.621428 ATCTTCACCATAGTGTTGATGAAAG 57.379 36.000 0.00 0.00 44.83 2.62
353 356 9.167311 GAATCACTTTATCTTCACCATAGTGTT 57.833 33.333 0.00 0.00 44.83 3.32
358 361 7.629157 TGTGGAATCACTTTATCTTCACCATA 58.371 34.615 0.00 0.00 43.94 2.74
371 374 3.759581 AGTGCAGATTGTGGAATCACTT 58.240 40.909 0.00 0.00 43.94 3.16
380 383 6.104665 TGATCTCTTAGAAGTGCAGATTGTG 58.895 40.000 0.00 0.00 0.00 3.33
383 386 6.327104 AGGATGATCTCTTAGAAGTGCAGATT 59.673 38.462 0.00 0.00 0.00 2.40
384 387 5.840149 AGGATGATCTCTTAGAAGTGCAGAT 59.160 40.000 0.00 0.00 0.00 2.90
385 388 5.207354 AGGATGATCTCTTAGAAGTGCAGA 58.793 41.667 0.00 0.00 0.00 4.26
397 400 0.399091 TTGGCCCGAGGATGATCTCT 60.399 55.000 0.00 0.00 0.00 3.10
399 402 0.692419 ACTTGGCCCGAGGATGATCT 60.692 55.000 0.00 0.00 0.00 2.75
400 403 0.533755 CACTTGGCCCGAGGATGATC 60.534 60.000 0.00 0.00 0.00 2.92
408 411 0.605319 GATGAACACACTTGGCCCGA 60.605 55.000 0.00 0.00 0.00 5.14
411 414 2.557924 TGATTGATGAACACACTTGGCC 59.442 45.455 0.00 0.00 0.00 5.36
412 415 3.921119 TGATTGATGAACACACTTGGC 57.079 42.857 0.00 0.00 0.00 4.52
413 416 4.801891 CCTTGATTGATGAACACACTTGG 58.198 43.478 0.00 0.00 0.00 3.61
419 422 3.119352 GGGAAGCCTTGATTGATGAACAC 60.119 47.826 0.00 0.00 0.00 3.32
420 423 3.091545 GGGAAGCCTTGATTGATGAACA 58.908 45.455 0.00 0.00 0.00 3.18
428 431 5.725822 TGGAAAAATATGGGAAGCCTTGATT 59.274 36.000 0.00 0.00 0.00 2.57
444 447 3.834231 CCTTGAGTCACCCATGGAAAAAT 59.166 43.478 15.22 0.00 32.40 1.82
446 449 2.875296 CCTTGAGTCACCCATGGAAAA 58.125 47.619 15.22 0.00 32.40 2.29
450 453 0.962356 GTGCCTTGAGTCACCCATGG 60.962 60.000 4.14 4.14 33.45 3.66
451 454 0.037303 AGTGCCTTGAGTCACCCATG 59.963 55.000 0.00 0.00 33.90 3.66
457 461 5.126869 TGATTTTTGAAAGTGCCTTGAGTCA 59.873 36.000 0.00 0.00 0.00 3.41
458 462 5.591099 TGATTTTTGAAAGTGCCTTGAGTC 58.409 37.500 0.00 0.00 0.00 3.36
505 509 2.543653 GCAACGATGTTGCCACTCTTTT 60.544 45.455 20.85 0.00 39.38 2.27
514 518 0.166814 GACTGGAGCAACGATGTTGC 59.833 55.000 23.22 23.22 45.22 4.17
518 522 1.742761 ATTGGACTGGAGCAACGATG 58.257 50.000 0.00 0.00 0.00 3.84
520 524 1.522668 CAATTGGACTGGAGCAACGA 58.477 50.000 0.00 0.00 0.00 3.85
534 538 4.452455 ACTTCGGTAAAGAGTCTGCAATTG 59.548 41.667 0.00 0.00 38.44 2.32
543 547 4.931661 TTGACTGACTTCGGTAAAGAGT 57.068 40.909 0.00 0.00 38.44 3.24
591 595 7.582667 AAAATTGTCTAGCCACTTTAACAGT 57.417 32.000 0.00 0.00 35.35 3.55
628 632 4.502645 GCCGGTGACATTAATAAAACATGC 59.497 41.667 1.90 0.00 0.00 4.06
636 640 5.707242 TTTTGTTGCCGGTGACATTAATA 57.293 34.783 11.90 0.00 0.00 0.98
639 643 3.632604 TCTTTTTGTTGCCGGTGACATTA 59.367 39.130 11.90 2.76 0.00 1.90
711 717 9.740710 AGTAATGTCTATCCAATATTTAAGGCC 57.259 33.333 0.00 0.00 0.00 5.19
750 757 6.454795 GTGAGGAATTAAATGACAAAAGGCA 58.545 36.000 0.00 0.00 0.00 4.75
828 835 7.160633 AGCATTTAAACGCTTGTTAAACTTG 57.839 32.000 2.28 0.00 33.81 3.16
888 895 3.830755 GTCTTGGAGTACCTGGAGTGTTA 59.169 47.826 0.00 0.00 37.04 2.41
898 905 7.494952 GGACTAATGTTTATGTCTTGGAGTACC 59.505 40.741 0.00 0.00 0.00 3.34
900 907 7.181305 TGGGACTAATGTTTATGTCTTGGAGTA 59.819 37.037 0.00 0.00 0.00 2.59
928 935 6.460781 TCTCTTCGTCTACTTTAATTTGGCA 58.539 36.000 0.00 0.00 0.00 4.92
940 947 6.291690 GGAAAATATGCGTTCTCTTCGTCTAC 60.292 42.308 0.00 0.00 0.00 2.59
1047 1057 3.450904 TGCAGAAATAGGAGTACCCACT 58.549 45.455 3.60 0.00 37.87 4.00
1096 1106 5.187967 ACCACCAAGAAAACACAAACCATTA 59.812 36.000 0.00 0.00 0.00 1.90
1097 1107 4.019771 ACCACCAAGAAAACACAAACCATT 60.020 37.500 0.00 0.00 0.00 3.16
1098 1108 3.517500 ACCACCAAGAAAACACAAACCAT 59.482 39.130 0.00 0.00 0.00 3.55
1099 1109 2.900546 ACCACCAAGAAAACACAAACCA 59.099 40.909 0.00 0.00 0.00 3.67
1100 1110 3.258228 CACCACCAAGAAAACACAAACC 58.742 45.455 0.00 0.00 0.00 3.27
1101 1111 2.670905 GCACCACCAAGAAAACACAAAC 59.329 45.455 0.00 0.00 0.00 2.93
1102 1112 2.564947 AGCACCACCAAGAAAACACAAA 59.435 40.909 0.00 0.00 0.00 2.83
1103 1113 2.094286 CAGCACCACCAAGAAAACACAA 60.094 45.455 0.00 0.00 0.00 3.33
1104 1114 1.476085 CAGCACCACCAAGAAAACACA 59.524 47.619 0.00 0.00 0.00 3.72
1105 1115 1.802508 GCAGCACCACCAAGAAAACAC 60.803 52.381 0.00 0.00 0.00 3.32
1106 1116 0.459489 GCAGCACCACCAAGAAAACA 59.541 50.000 0.00 0.00 0.00 2.83
1107 1117 0.746659 AGCAGCACCACCAAGAAAAC 59.253 50.000 0.00 0.00 0.00 2.43
1108 1118 2.356665 TAGCAGCACCACCAAGAAAA 57.643 45.000 0.00 0.00 0.00 2.29
1109 1119 2.356665 TTAGCAGCACCACCAAGAAA 57.643 45.000 0.00 0.00 0.00 2.52
1110 1120 2.040278 AGATTAGCAGCACCACCAAGAA 59.960 45.455 0.00 0.00 0.00 2.52
1111 1121 1.630369 AGATTAGCAGCACCACCAAGA 59.370 47.619 0.00 0.00 0.00 3.02
1112 1122 2.119801 AGATTAGCAGCACCACCAAG 57.880 50.000 0.00 0.00 0.00 3.61
1113 1123 3.712016 TTAGATTAGCAGCACCACCAA 57.288 42.857 0.00 0.00 0.00 3.67
1114 1124 3.455910 AGATTAGATTAGCAGCACCACCA 59.544 43.478 0.00 0.00 0.00 4.17
1115 1125 4.078639 AGATTAGATTAGCAGCACCACC 57.921 45.455 0.00 0.00 0.00 4.61
1116 1126 6.148480 CCATTAGATTAGATTAGCAGCACCAC 59.852 42.308 0.00 0.00 0.00 4.16
1117 1127 6.233434 CCATTAGATTAGATTAGCAGCACCA 58.767 40.000 0.00 0.00 0.00 4.17
1118 1128 5.645497 CCCATTAGATTAGATTAGCAGCACC 59.355 44.000 0.00 0.00 0.00 5.01
1119 1129 5.645497 CCCCATTAGATTAGATTAGCAGCAC 59.355 44.000 0.00 0.00 0.00 4.40
1120 1130 5.310594 ACCCCATTAGATTAGATTAGCAGCA 59.689 40.000 0.00 0.00 0.00 4.41
1121 1131 5.810095 ACCCCATTAGATTAGATTAGCAGC 58.190 41.667 0.00 0.00 0.00 5.25
1122 1132 8.571336 CAAAACCCCATTAGATTAGATTAGCAG 58.429 37.037 0.00 0.00 0.00 4.24
1123 1133 7.014230 GCAAAACCCCATTAGATTAGATTAGCA 59.986 37.037 0.00 0.00 0.00 3.49
1124 1134 7.231519 AGCAAAACCCCATTAGATTAGATTAGC 59.768 37.037 0.00 0.00 0.00 3.09
1125 1135 8.571336 CAGCAAAACCCCATTAGATTAGATTAG 58.429 37.037 0.00 0.00 0.00 1.73
1201 1213 2.354188 TCGTCAACGACCGTGCAG 60.354 61.111 0.22 0.00 44.22 4.41
1222 1234 0.260230 TGGTGCAGAAAAACTCCCCA 59.740 50.000 0.00 0.00 0.00 4.96
1293 1305 1.971357 CACAGTGGTAGTCCTTGAGGT 59.029 52.381 0.00 0.00 36.34 3.85
1361 1373 8.671384 AGTACTAGCTAGTATTTCAGTCTCTG 57.329 38.462 31.04 0.75 40.55 3.35
1387 1399 5.048713 GCGATAAGTAATTCCAAATGGAGGG 60.049 44.000 1.86 0.00 46.36 4.30
1388 1400 5.334105 CGCGATAAGTAATTCCAAATGGAGG 60.334 44.000 0.00 0.00 46.36 4.30
1389 1401 5.465390 TCGCGATAAGTAATTCCAAATGGAG 59.535 40.000 3.71 0.00 46.36 3.86
1391 1403 5.666969 TCGCGATAAGTAATTCCAAATGG 57.333 39.130 3.71 0.00 0.00 3.16
1393 1405 7.647715 CCATTTTCGCGATAAGTAATTCCAAAT 59.352 33.333 10.88 5.36 0.00 2.32
1394 1406 6.970043 CCATTTTCGCGATAAGTAATTCCAAA 59.030 34.615 10.88 2.81 0.00 3.28
1395 1407 6.316640 TCCATTTTCGCGATAAGTAATTCCAA 59.683 34.615 10.88 0.00 0.00 3.53
1396 1408 5.818336 TCCATTTTCGCGATAAGTAATTCCA 59.182 36.000 10.88 0.00 0.00 3.53
1397 1409 6.295039 TCCATTTTCGCGATAAGTAATTCC 57.705 37.500 10.88 0.00 0.00 3.01
1398 1410 7.352739 ACATCCATTTTCGCGATAAGTAATTC 58.647 34.615 10.88 0.00 0.00 2.17
1399 1411 7.259290 ACATCCATTTTCGCGATAAGTAATT 57.741 32.000 10.88 0.00 0.00 1.40
1400 1412 6.861065 ACATCCATTTTCGCGATAAGTAAT 57.139 33.333 10.88 3.57 0.00 1.89
1401 1413 7.870954 AGATACATCCATTTTCGCGATAAGTAA 59.129 33.333 10.88 0.00 0.00 2.24
1402 1414 7.375834 AGATACATCCATTTTCGCGATAAGTA 58.624 34.615 10.88 9.97 0.00 2.24
1403 1415 6.223852 AGATACATCCATTTTCGCGATAAGT 58.776 36.000 10.88 7.95 0.00 2.24
1404 1416 6.712241 AGATACATCCATTTTCGCGATAAG 57.288 37.500 10.88 5.76 0.00 1.73
1405 1417 7.541091 GTCTAGATACATCCATTTTCGCGATAA 59.459 37.037 10.88 12.88 0.00 1.75
1406 1418 7.027760 GTCTAGATACATCCATTTTCGCGATA 58.972 38.462 10.88 0.90 0.00 2.92
1407 1419 5.864474 GTCTAGATACATCCATTTTCGCGAT 59.136 40.000 10.88 0.00 0.00 4.58
1408 1420 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
1409 1421 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
1410 1422 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
1411 1423 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
1449 1461 9.696917 GGAATTACTTGTCTTGAAAATGAATGT 57.303 29.630 0.00 0.00 0.00 2.71
1450 1462 8.853345 CGGAATTACTTGTCTTGAAAATGAATG 58.147 33.333 0.00 0.00 0.00 2.67
1451 1463 8.792633 TCGGAATTACTTGTCTTGAAAATGAAT 58.207 29.630 0.00 0.00 0.00 2.57
1452 1464 8.160521 TCGGAATTACTTGTCTTGAAAATGAA 57.839 30.769 0.00 0.00 0.00 2.57
1453 1465 7.737972 TCGGAATTACTTGTCTTGAAAATGA 57.262 32.000 0.00 0.00 0.00 2.57
1454 1466 7.059488 CGTTCGGAATTACTTGTCTTGAAAATG 59.941 37.037 0.00 0.00 0.00 2.32
1455 1467 7.075741 CGTTCGGAATTACTTGTCTTGAAAAT 58.924 34.615 0.00 0.00 0.00 1.82
1456 1468 6.423862 CGTTCGGAATTACTTGTCTTGAAAA 58.576 36.000 0.00 0.00 0.00 2.29
1457 1469 5.049954 CCGTTCGGAATTACTTGTCTTGAAA 60.050 40.000 5.19 0.00 0.00 2.69
1458 1470 4.449743 CCGTTCGGAATTACTTGTCTTGAA 59.550 41.667 5.19 0.00 0.00 2.69
1459 1471 3.991773 CCGTTCGGAATTACTTGTCTTGA 59.008 43.478 5.19 0.00 0.00 3.02
1460 1472 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
1461 1473 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
1462 1474 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1463 1475 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1464 1476 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1465 1477 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1466 1478 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1467 1479 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1468 1480 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1469 1481 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1470 1482 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1471 1483 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1472 1484 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1473 1485 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1474 1486 0.172803 CAAGTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
1475 1487 0.886563 ACAAGTACTCCCTCCGTTCG 59.113 55.000 0.00 0.00 0.00 3.95
1476 1488 3.119209 CCTAACAAGTACTCCCTCCGTTC 60.119 52.174 0.00 0.00 0.00 3.95
1477 1489 2.830321 CCTAACAAGTACTCCCTCCGTT 59.170 50.000 0.00 0.00 0.00 4.44
1478 1490 2.454538 CCTAACAAGTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
1479 1491 1.136500 GCCTAACAAGTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
1480 1492 1.136500 CGCCTAACAAGTACTCCCTCC 59.864 57.143 0.00 0.00 0.00 4.30
1481 1493 1.136500 CCGCCTAACAAGTACTCCCTC 59.864 57.143 0.00 0.00 0.00 4.30
1482 1494 1.192428 CCGCCTAACAAGTACTCCCT 58.808 55.000 0.00 0.00 0.00 4.20
1483 1495 0.900421 ACCGCCTAACAAGTACTCCC 59.100 55.000 0.00 0.00 0.00 4.30
1484 1496 2.757314 AGTACCGCCTAACAAGTACTCC 59.243 50.000 0.00 0.00 41.07 3.85
1485 1497 4.446994 AAGTACCGCCTAACAAGTACTC 57.553 45.455 0.00 0.00 43.44 2.59
1486 1498 5.012893 AGTAAGTACCGCCTAACAAGTACT 58.987 41.667 0.00 0.00 45.53 2.73
1487 1499 5.316327 AGTAAGTACCGCCTAACAAGTAC 57.684 43.478 0.00 0.00 36.23 2.73
1488 1500 5.476599 TGAAGTAAGTACCGCCTAACAAGTA 59.523 40.000 0.00 0.00 0.00 2.24
1489 1501 4.281688 TGAAGTAAGTACCGCCTAACAAGT 59.718 41.667 0.00 0.00 0.00 3.16
1490 1502 4.813027 TGAAGTAAGTACCGCCTAACAAG 58.187 43.478 0.00 0.00 0.00 3.16
1491 1503 4.322198 CCTGAAGTAAGTACCGCCTAACAA 60.322 45.833 0.00 0.00 0.00 2.83
1492 1504 3.194116 CCTGAAGTAAGTACCGCCTAACA 59.806 47.826 0.00 0.00 0.00 2.41
1493 1505 3.445096 TCCTGAAGTAAGTACCGCCTAAC 59.555 47.826 0.00 0.00 0.00 2.34
1494 1506 3.700538 TCCTGAAGTAAGTACCGCCTAA 58.299 45.455 0.00 0.00 0.00 2.69
1495 1507 3.370840 TCCTGAAGTAAGTACCGCCTA 57.629 47.619 0.00 0.00 0.00 3.93
1496 1508 2.226962 TCCTGAAGTAAGTACCGCCT 57.773 50.000 0.00 0.00 0.00 5.52
1497 1509 2.483188 CCATCCTGAAGTAAGTACCGCC 60.483 54.545 0.00 0.00 0.00 6.13
1498 1510 2.429610 TCCATCCTGAAGTAAGTACCGC 59.570 50.000 0.00 0.00 0.00 5.68
1499 1511 3.181478 GGTCCATCCTGAAGTAAGTACCG 60.181 52.174 0.00 0.00 0.00 4.02
1500 1512 3.773119 TGGTCCATCCTGAAGTAAGTACC 59.227 47.826 0.00 0.00 37.07 3.34
1501 1513 5.416271 TTGGTCCATCCTGAAGTAAGTAC 57.584 43.478 0.00 0.00 37.07 2.73
1502 1514 6.183361 TGTTTTGGTCCATCCTGAAGTAAGTA 60.183 38.462 0.00 0.00 37.07 2.24
1503 1515 4.993705 TTTGGTCCATCCTGAAGTAAGT 57.006 40.909 0.00 0.00 37.07 2.24
1504 1516 5.070001 TGTTTTGGTCCATCCTGAAGTAAG 58.930 41.667 0.00 0.00 37.07 2.34
1505 1517 5.055265 TGTTTTGGTCCATCCTGAAGTAA 57.945 39.130 0.00 0.00 37.07 2.24
1506 1518 4.715534 TGTTTTGGTCCATCCTGAAGTA 57.284 40.909 0.00 0.00 37.07 2.24
1507 1519 3.593442 TGTTTTGGTCCATCCTGAAGT 57.407 42.857 0.00 0.00 37.07 3.01
1508 1520 3.828451 ACATGTTTTGGTCCATCCTGAAG 59.172 43.478 0.00 0.00 37.07 3.02
1509 1521 3.843422 ACATGTTTTGGTCCATCCTGAA 58.157 40.909 0.00 0.00 37.07 3.02
1510 1522 3.524095 ACATGTTTTGGTCCATCCTGA 57.476 42.857 0.00 0.00 37.07 3.86
1511 1523 5.185635 ACATAACATGTTTTGGTCCATCCTG 59.814 40.000 26.14 4.09 41.63 3.86
1512 1524 5.332743 ACATAACATGTTTTGGTCCATCCT 58.667 37.500 26.14 6.39 41.63 3.24
1513 1525 5.659440 ACATAACATGTTTTGGTCCATCC 57.341 39.130 26.14 0.00 41.63 3.51
1526 1554 9.933723 TCTCAATATGAGGTCATACATAACATG 57.066 33.333 7.47 0.00 44.39 3.21
1538 1566 4.679373 TCCTTGCTCTCAATATGAGGTC 57.321 45.455 7.47 1.30 44.39 3.85
1588 1616 5.829924 CCACATGGCTTCCAAATAAGACTAT 59.170 40.000 0.00 0.00 36.95 2.12
1593 1621 4.019174 ACTCCACATGGCTTCCAAATAAG 58.981 43.478 0.00 0.00 36.95 1.73
1615 1643 4.992319 AGTGAACAATAAAACATCGACCGA 59.008 37.500 0.00 0.00 0.00 4.69
1678 1706 7.380423 TCCTTTAATTCCCAATGGTTTTCAA 57.620 32.000 0.00 0.00 0.00 2.69
1690 1718 8.446599 TTCGACTTGATAATCCTTTAATTCCC 57.553 34.615 0.00 0.00 0.00 3.97
1700 1728 8.833231 TCCAATAAGATTCGACTTGATAATCC 57.167 34.615 0.00 0.00 31.35 3.01
1708 1736 9.703892 CTTGATAGATCCAATAAGATTCGACTT 57.296 33.333 0.00 0.00 0.00 3.01
1712 1740 9.481340 TCAACTTGATAGATCCAATAAGATTCG 57.519 33.333 0.00 0.00 0.00 3.34
1721 1749 7.280876 GCATACAGTTCAACTTGATAGATCCAA 59.719 37.037 0.00 0.00 0.00 3.53
1723 1751 6.989169 AGCATACAGTTCAACTTGATAGATCC 59.011 38.462 0.00 0.00 0.00 3.36
1780 1810 5.770162 AGTCCAATCCCTTGTTGAACTAAAG 59.230 40.000 0.00 0.00 0.00 1.85
1791 1821 2.291800 ACCAATCCAGTCCAATCCCTTG 60.292 50.000 0.00 0.00 0.00 3.61
1805 1835 1.068541 GTTGGCTGACGAAACCAATCC 60.069 52.381 7.10 0.00 44.79 3.01
1826 1856 1.197721 GAGATTGCAACTGAACACCGG 59.802 52.381 0.00 0.00 0.00 5.28
1827 1857 1.872952 TGAGATTGCAACTGAACACCG 59.127 47.619 0.00 0.00 0.00 4.94
1835 1865 3.070734 AGTGTGAGTCTGAGATTGCAACT 59.929 43.478 0.00 0.56 0.00 3.16
1879 1916 5.992217 GTCTGAGATGAACCAAAGTAAGTGT 59.008 40.000 0.00 0.00 0.00 3.55
1888 1925 4.707448 GGAGTAGAGTCTGAGATGAACCAA 59.293 45.833 1.86 0.00 0.00 3.67
1901 1938 2.977772 ATGCTGCAAGGAGTAGAGTC 57.022 50.000 6.36 0.00 38.10 3.36
1913 1950 5.471797 TGCAACTAAGTAGTAAAATGCTGCA 59.528 36.000 4.13 4.13 37.59 4.41
1920 1957 9.969001 ATCCCTTATTGCAACTAAGTAGTAAAA 57.031 29.630 18.81 0.00 34.99 1.52
1924 1961 7.630082 TGAATCCCTTATTGCAACTAAGTAGT 58.370 34.615 18.81 11.07 38.39 2.73
1925 1962 8.398665 GTTGAATCCCTTATTGCAACTAAGTAG 58.601 37.037 18.81 13.38 35.27 2.57
1926 1963 8.107095 AGTTGAATCCCTTATTGCAACTAAGTA 58.893 33.333 18.81 11.78 40.37 2.24
1927 1964 6.948309 AGTTGAATCCCTTATTGCAACTAAGT 59.052 34.615 18.81 2.39 40.37 2.24
1928 1965 7.396540 AGTTGAATCCCTTATTGCAACTAAG 57.603 36.000 0.00 10.87 40.37 2.18
1929 1966 6.093495 CGAGTTGAATCCCTTATTGCAACTAA 59.907 38.462 0.00 1.34 41.18 2.24
1930 1967 5.584649 CGAGTTGAATCCCTTATTGCAACTA 59.415 40.000 0.00 0.00 41.18 2.24
1931 1968 4.396166 CGAGTTGAATCCCTTATTGCAACT 59.604 41.667 0.00 0.00 42.34 3.16
1932 1969 4.394920 TCGAGTTGAATCCCTTATTGCAAC 59.605 41.667 0.00 0.00 36.68 4.17
1933 1970 4.394920 GTCGAGTTGAATCCCTTATTGCAA 59.605 41.667 0.00 0.00 0.00 4.08
1934 1971 3.938963 GTCGAGTTGAATCCCTTATTGCA 59.061 43.478 0.00 0.00 0.00 4.08
1935 1972 3.938963 TGTCGAGTTGAATCCCTTATTGC 59.061 43.478 0.00 0.00 0.00 3.56
1936 1973 5.586243 ACATGTCGAGTTGAATCCCTTATTG 59.414 40.000 0.00 0.00 0.00 1.90
1937 1974 5.745227 ACATGTCGAGTTGAATCCCTTATT 58.255 37.500 0.00 0.00 0.00 1.40
1938 1975 5.359194 ACATGTCGAGTTGAATCCCTTAT 57.641 39.130 0.00 0.00 0.00 1.73
1939 1976 4.819105 ACATGTCGAGTTGAATCCCTTA 57.181 40.909 0.00 0.00 0.00 2.69
1940 1977 3.703001 ACATGTCGAGTTGAATCCCTT 57.297 42.857 0.00 0.00 0.00 3.95
1941 1978 4.819105 TTACATGTCGAGTTGAATCCCT 57.181 40.909 0.00 0.00 0.00 4.20
1942 1979 6.513180 TCTATTACATGTCGAGTTGAATCCC 58.487 40.000 0.00 0.00 0.00 3.85
1943 1980 7.491372 TGTTCTATTACATGTCGAGTTGAATCC 59.509 37.037 0.00 0.00 0.00 3.01
1944 1981 8.321716 GTGTTCTATTACATGTCGAGTTGAATC 58.678 37.037 0.00 0.00 0.00 2.52
1948 1985 5.867174 TGGTGTTCTATTACATGTCGAGTTG 59.133 40.000 0.00 0.00 0.00 3.16
1959 1996 5.367945 TCCAATCCCTGGTGTTCTATTAC 57.632 43.478 0.00 0.00 46.51 1.89
2099 2164 2.483877 TCATTGCCGCTTACAACTCAAG 59.516 45.455 0.00 0.00 0.00 3.02
2102 2167 2.076863 ACTCATTGCCGCTTACAACTC 58.923 47.619 0.00 0.00 0.00 3.01
2135 2200 4.715896 CATATGAATGATGCTTGCGGTAC 58.284 43.478 0.00 0.00 34.84 3.34
2136 2201 3.189080 GCATATGAATGATGCTTGCGGTA 59.811 43.478 6.97 0.00 45.14 4.02
2158 2223 7.173218 ACACAACCAGTAGTTTCTACATTGATG 59.827 37.037 17.17 14.48 36.18 3.07
2160 2225 6.588204 ACACAACCAGTAGTTTCTACATTGA 58.412 36.000 17.17 0.00 36.18 2.57
2175 2240 3.242903 TGCAACGAATTGTACACAACCAG 60.243 43.478 0.00 0.00 38.86 4.00
2193 2258 1.073722 CTCCCACAAGCCTCTGCAA 59.926 57.895 0.00 0.00 41.13 4.08
2198 2263 3.732849 CCCCCTCCCACAAGCCTC 61.733 72.222 0.00 0.00 0.00 4.70
2202 2267 3.661648 CCCACCCCCTCCCACAAG 61.662 72.222 0.00 0.00 0.00 3.16
2210 2284 3.517497 CAAACACCCCCACCCCCT 61.517 66.667 0.00 0.00 0.00 4.79
2216 2290 2.255770 AAAGAAACCAAACACCCCCA 57.744 45.000 0.00 0.00 0.00 4.96
2236 2323 2.302260 TGTCGTTGCCTTGATCCAAAA 58.698 42.857 0.00 0.00 0.00 2.44
2249 2336 2.159627 CCCCTCGAGAAAATTGTCGTTG 59.840 50.000 15.71 6.93 43.47 4.10
2254 2341 1.073923 AGCACCCCTCGAGAAAATTGT 59.926 47.619 15.71 0.00 0.00 2.71
2261 2348 2.449967 TACCCAAGCACCCCTCGAGA 62.450 60.000 15.71 0.00 0.00 4.04
2262 2349 1.987855 TACCCAAGCACCCCTCGAG 60.988 63.158 5.13 5.13 0.00 4.04
2264 2351 2.267961 GTACCCAAGCACCCCTCG 59.732 66.667 0.00 0.00 0.00 4.63
2265 2352 1.002502 GTGTACCCAAGCACCCCTC 60.003 63.158 0.00 0.00 0.00 4.30
2288 2375 4.499037 AAGTCCTCATTTTGTAAACGGC 57.501 40.909 0.00 0.00 0.00 5.68
2296 2383 9.231297 TGGTCTAGATTAAAAGTCCTCATTTTG 57.769 33.333 0.00 0.00 32.38 2.44
2301 2388 6.574465 GCAGTGGTCTAGATTAAAAGTCCTCA 60.574 42.308 0.00 0.00 0.00 3.86
2302 2389 5.813157 GCAGTGGTCTAGATTAAAAGTCCTC 59.187 44.000 0.00 0.00 0.00 3.71
2303 2390 5.338463 GGCAGTGGTCTAGATTAAAAGTCCT 60.338 44.000 0.00 0.00 0.00 3.85
2304 2391 4.876679 GGCAGTGGTCTAGATTAAAAGTCC 59.123 45.833 0.00 0.00 0.00 3.85
2305 2392 4.567159 CGGCAGTGGTCTAGATTAAAAGTC 59.433 45.833 0.00 0.00 0.00 3.01
2306 2393 4.020485 ACGGCAGTGGTCTAGATTAAAAGT 60.020 41.667 0.00 0.00 0.00 2.66
2307 2394 4.504858 ACGGCAGTGGTCTAGATTAAAAG 58.495 43.478 0.00 0.00 0.00 2.27
2308 2395 4.546829 ACGGCAGTGGTCTAGATTAAAA 57.453 40.909 0.00 0.00 0.00 1.52
2309 2396 4.546829 AACGGCAGTGGTCTAGATTAAA 57.453 40.909 0.00 0.00 0.00 1.52
2310 2397 4.546829 AAACGGCAGTGGTCTAGATTAA 57.453 40.909 0.00 0.00 0.00 1.40
2311 2398 4.463539 TGTAAACGGCAGTGGTCTAGATTA 59.536 41.667 0.00 0.00 0.00 1.75
2312 2399 3.259876 TGTAAACGGCAGTGGTCTAGATT 59.740 43.478 0.00 0.00 0.00 2.40
2313 2400 2.829720 TGTAAACGGCAGTGGTCTAGAT 59.170 45.455 0.00 0.00 0.00 1.98
2314 2401 2.241160 TGTAAACGGCAGTGGTCTAGA 58.759 47.619 0.00 0.00 0.00 2.43
2315 2402 2.736144 TGTAAACGGCAGTGGTCTAG 57.264 50.000 0.00 0.00 0.00 2.43
2316 2403 3.472283 TTTGTAAACGGCAGTGGTCTA 57.528 42.857 0.00 0.00 0.00 2.59
2317 2404 2.335316 TTTGTAAACGGCAGTGGTCT 57.665 45.000 0.00 0.00 0.00 3.85
2318 2405 3.003897 TCATTTTGTAAACGGCAGTGGTC 59.996 43.478 0.00 0.00 0.00 4.02
2319 2406 2.952978 TCATTTTGTAAACGGCAGTGGT 59.047 40.909 0.00 0.00 0.00 4.16
2320 2407 3.564511 CTCATTTTGTAAACGGCAGTGG 58.435 45.455 0.00 0.00 0.00 4.00
2321 2408 3.252215 TCCTCATTTTGTAAACGGCAGTG 59.748 43.478 0.00 0.00 0.00 3.66
2322 2409 3.482436 TCCTCATTTTGTAAACGGCAGT 58.518 40.909 0.00 0.00 0.00 4.40
2323 2410 3.502211 ACTCCTCATTTTGTAAACGGCAG 59.498 43.478 0.00 0.00 0.00 4.85
2324 2411 3.482436 ACTCCTCATTTTGTAAACGGCA 58.518 40.909 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.