Multiple sequence alignment - TraesCS3B01G601800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G601800 chr3B 100.000 2335 0 0 1 2335 822093677 822096011 0.000000e+00 4313.0
1 TraesCS3B01G601800 chr3B 90.051 975 64 20 563 1524 822038773 822039727 0.000000e+00 1232.0
2 TraesCS3B01G601800 chr3B 89.959 976 63 21 563 1524 822066863 822067817 0.000000e+00 1227.0
3 TraesCS3B01G601800 chr3B 91.209 637 36 13 525 1157 822008025 822008645 0.000000e+00 848.0
4 TraesCS3B01G601800 chr3B 90.881 636 40 11 525 1157 822023320 822023940 0.000000e+00 837.0
5 TraesCS3B01G601800 chr3B 80.450 844 66 61 735 1531 821836308 821837099 9.430000e-154 553.0
6 TraesCS3B01G601800 chr3A 91.318 933 48 13 622 1535 744286455 744287373 0.000000e+00 1243.0
7 TraesCS3B01G601800 chr3A 86.990 1030 78 28 525 1535 744266087 744267079 0.000000e+00 1109.0
8 TraesCS3B01G601800 chr3A 88.118 951 72 23 580 1516 744261883 744262806 0.000000e+00 1092.0
9 TraesCS3B01G601800 chr3A 82.734 695 82 33 1661 2335 8227895 8227219 3.340000e-163 584.0
10 TraesCS3B01G601800 chr3A 80.729 851 63 60 735 1540 743987883 743988677 9.360000e-159 569.0
11 TraesCS3B01G601800 chr3A 86.252 531 60 12 2 524 744265377 744265902 4.360000e-157 564.0
12 TraesCS3B01G601800 chr3A 81.460 685 96 22 1659 2333 701920292 701919629 1.230000e-147 532.0
13 TraesCS3B01G601800 chr3A 80.406 689 109 24 1658 2335 208743118 208742445 3.460000e-138 501.0
14 TraesCS3B01G601800 chr3A 87.019 416 52 2 1920 2335 20831394 20830981 3.510000e-128 468.0
15 TraesCS3B01G601800 chr3A 86.614 254 28 5 2 254 744254272 744254520 2.290000e-70 276.0
16 TraesCS3B01G601800 chr3A 94.915 118 4 1 1543 1660 744267130 744267245 1.430000e-42 183.0
17 TraesCS3B01G601800 chr3A 92.308 130 4 2 1535 1660 744287401 744287528 1.840000e-41 180.0
18 TraesCS3B01G601800 chr3D 88.737 950 71 25 585 1516 610186506 610187437 0.000000e+00 1129.0
19 TraesCS3B01G601800 chr3D 85.701 1056 75 45 525 1535 610189880 610190904 0.000000e+00 1044.0
20 TraesCS3B01G601800 chr3D 83.357 691 85 23 1661 2335 1081576 1082252 1.530000e-171 612.0
21 TraesCS3B01G601800 chr3D 87.194 531 55 10 2 524 610189175 610189700 2.000000e-165 592.0
22 TraesCS3B01G601800 chr3D 81.287 684 70 41 883 1531 610138890 610139550 3.460000e-138 501.0
23 TraesCS3B01G601800 chr3D 92.593 135 4 5 1528 1660 610190927 610191057 3.060000e-44 189.0
24 TraesCS3B01G601800 chr3D 86.179 123 13 3 1660 1778 564449130 564449252 1.880000e-26 130.0
25 TraesCS3B01G601800 chr2B 91.508 683 48 10 1657 2334 59040866 59040189 0.000000e+00 931.0
26 TraesCS3B01G601800 chr7B 90.280 679 55 7 1658 2335 713181338 713180670 0.000000e+00 878.0
27 TraesCS3B01G601800 chrUn 91.393 639 35 13 525 1159 459077085 459077707 0.000000e+00 857.0
28 TraesCS3B01G601800 chrUn 83.965 686 68 33 1660 2335 27687822 27687169 9.170000e-174 619.0
29 TraesCS3B01G601800 chrUn 93.359 256 12 2 1270 1524 478839170 478838919 7.880000e-100 374.0
30 TraesCS3B01G601800 chr1D 84.593 688 69 30 1659 2335 222591106 222591767 0.000000e+00 649.0
31 TraesCS3B01G601800 chr5B 82.070 686 93 22 1660 2335 703250655 703249990 2.030000e-155 558.0
32 TraesCS3B01G601800 chr5D 87.981 416 50 0 1920 2335 79269842 79269427 2.080000e-135 492.0
33 TraesCS3B01G601800 chr5D 85.960 349 19 5 1658 2003 438399772 438399451 1.720000e-91 346.0
34 TraesCS3B01G601800 chr4B 87.603 121 10 4 1659 1775 27525149 27525268 4.050000e-28 135.0
35 TraesCS3B01G601800 chr6B 91.228 57 3 1 1605 1661 712307208 712307154 2.490000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G601800 chr3B 822093677 822096011 2334 False 4313.0 4313 100.00000 1 2335 1 chr3B.!!$F6 2334
1 TraesCS3B01G601800 chr3B 822038773 822039727 954 False 1232.0 1232 90.05100 563 1524 1 chr3B.!!$F4 961
2 TraesCS3B01G601800 chr3B 822066863 822067817 954 False 1227.0 1227 89.95900 563 1524 1 chr3B.!!$F5 961
3 TraesCS3B01G601800 chr3B 822008025 822008645 620 False 848.0 848 91.20900 525 1157 1 chr3B.!!$F2 632
4 TraesCS3B01G601800 chr3B 822023320 822023940 620 False 837.0 837 90.88100 525 1157 1 chr3B.!!$F3 632
5 TraesCS3B01G601800 chr3B 821836308 821837099 791 False 553.0 553 80.45000 735 1531 1 chr3B.!!$F1 796
6 TraesCS3B01G601800 chr3A 744261883 744267245 5362 False 737.0 1109 89.06875 2 1660 4 chr3A.!!$F3 1658
7 TraesCS3B01G601800 chr3A 744286455 744287528 1073 False 711.5 1243 91.81300 622 1660 2 chr3A.!!$F4 1038
8 TraesCS3B01G601800 chr3A 8227219 8227895 676 True 584.0 584 82.73400 1661 2335 1 chr3A.!!$R1 674
9 TraesCS3B01G601800 chr3A 743987883 743988677 794 False 569.0 569 80.72900 735 1540 1 chr3A.!!$F1 805
10 TraesCS3B01G601800 chr3A 701919629 701920292 663 True 532.0 532 81.46000 1659 2333 1 chr3A.!!$R4 674
11 TraesCS3B01G601800 chr3A 208742445 208743118 673 True 501.0 501 80.40600 1658 2335 1 chr3A.!!$R3 677
12 TraesCS3B01G601800 chr3D 610186506 610191057 4551 False 738.5 1129 88.55625 2 1660 4 chr3D.!!$F4 1658
13 TraesCS3B01G601800 chr3D 1081576 1082252 676 False 612.0 612 83.35700 1661 2335 1 chr3D.!!$F1 674
14 TraesCS3B01G601800 chr3D 610138890 610139550 660 False 501.0 501 81.28700 883 1531 1 chr3D.!!$F3 648
15 TraesCS3B01G601800 chr2B 59040189 59040866 677 True 931.0 931 91.50800 1657 2334 1 chr2B.!!$R1 677
16 TraesCS3B01G601800 chr7B 713180670 713181338 668 True 878.0 878 90.28000 1658 2335 1 chr7B.!!$R1 677
17 TraesCS3B01G601800 chrUn 459077085 459077707 622 False 857.0 857 91.39300 525 1159 1 chrUn.!!$F1 634
18 TraesCS3B01G601800 chrUn 27687169 27687822 653 True 619.0 619 83.96500 1660 2335 1 chrUn.!!$R1 675
19 TraesCS3B01G601800 chr1D 222591106 222591767 661 False 649.0 649 84.59300 1659 2335 1 chr1D.!!$F1 676
20 TraesCS3B01G601800 chr5B 703249990 703250655 665 True 558.0 558 82.07000 1660 2335 1 chr5B.!!$R1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.034477 ATTCCCACGGGATCCAACAC 60.034 55.0 15.23 0.0 44.74 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 9715 0.508641 CAGTAGCTGTGTGTGTTCGC 59.491 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.993175 GTTTTCCTTCTGCAGTAAATCAAC 57.007 37.500 14.67 8.01 0.00 3.18
24 25 6.503524 GTTTTCCTTCTGCAGTAAATCAACA 58.496 36.000 14.67 0.00 0.00 3.33
25 26 6.899393 TTTCCTTCTGCAGTAAATCAACAT 57.101 33.333 14.67 0.00 0.00 2.71
26 27 6.500684 TTCCTTCTGCAGTAAATCAACATC 57.499 37.500 14.67 0.00 0.00 3.06
27 28 4.943705 TCCTTCTGCAGTAAATCAACATCC 59.056 41.667 14.67 0.00 0.00 3.51
28 29 4.701651 CCTTCTGCAGTAAATCAACATCCA 59.298 41.667 14.67 0.00 0.00 3.41
29 30 5.359009 CCTTCTGCAGTAAATCAACATCCAT 59.641 40.000 14.67 0.00 0.00 3.41
30 31 6.543465 CCTTCTGCAGTAAATCAACATCCATA 59.457 38.462 14.67 0.00 0.00 2.74
31 32 7.230108 CCTTCTGCAGTAAATCAACATCCATAT 59.770 37.037 14.67 0.00 0.00 1.78
32 33 8.523915 TTCTGCAGTAAATCAACATCCATATT 57.476 30.769 14.67 0.00 0.00 1.28
33 34 8.523915 TCTGCAGTAAATCAACATCCATATTT 57.476 30.769 14.67 0.00 0.00 1.40
34 35 8.970020 TCTGCAGTAAATCAACATCCATATTTT 58.030 29.630 14.67 0.00 0.00 1.82
62 63 8.888579 ACATTACTCTATCTTTAATTCCCACG 57.111 34.615 0.00 0.00 0.00 4.94
63 64 7.931948 ACATTACTCTATCTTTAATTCCCACGG 59.068 37.037 0.00 0.00 0.00 4.94
64 65 5.291905 ACTCTATCTTTAATTCCCACGGG 57.708 43.478 0.00 0.00 0.00 5.28
65 66 4.966805 ACTCTATCTTTAATTCCCACGGGA 59.033 41.667 0.00 0.00 43.52 5.14
66 67 5.607171 ACTCTATCTTTAATTCCCACGGGAT 59.393 40.000 5.43 0.00 44.74 3.85
67 68 6.110411 TCTATCTTTAATTCCCACGGGATC 57.890 41.667 5.43 0.00 44.74 3.36
68 69 3.570912 TCTTTAATTCCCACGGGATCC 57.429 47.619 5.43 1.92 44.74 3.36
69 70 2.847449 TCTTTAATTCCCACGGGATCCA 59.153 45.455 15.23 0.00 44.74 3.41
70 71 3.267291 TCTTTAATTCCCACGGGATCCAA 59.733 43.478 15.23 0.00 44.74 3.53
71 72 2.721425 TAATTCCCACGGGATCCAAC 57.279 50.000 15.23 0.00 44.74 3.77
72 73 0.701731 AATTCCCACGGGATCCAACA 59.298 50.000 15.23 0.00 44.74 3.33
73 74 0.034477 ATTCCCACGGGATCCAACAC 60.034 55.000 15.23 0.00 44.74 3.32
74 75 1.419720 TTCCCACGGGATCCAACACA 61.420 55.000 15.23 0.00 44.74 3.72
75 76 1.377202 CCCACGGGATCCAACACAG 60.377 63.158 15.23 0.00 37.50 3.66
76 77 2.040544 CCACGGGATCCAACACAGC 61.041 63.158 15.23 0.00 0.00 4.40
77 78 1.302431 CACGGGATCCAACACAGCA 60.302 57.895 15.23 0.00 0.00 4.41
78 79 0.677731 CACGGGATCCAACACAGCAT 60.678 55.000 15.23 0.00 0.00 3.79
79 80 0.677731 ACGGGATCCAACACAGCATG 60.678 55.000 15.23 0.00 46.00 4.06
80 81 1.378882 CGGGATCCAACACAGCATGG 61.379 60.000 15.23 0.00 43.62 3.66
81 82 1.669999 GGGATCCAACACAGCATGGC 61.670 60.000 15.23 0.00 43.62 4.40
82 83 0.966875 GGATCCAACACAGCATGGCA 60.967 55.000 6.95 0.00 43.62 4.92
83 84 1.108776 GATCCAACACAGCATGGCAT 58.891 50.000 0.00 0.00 43.62 4.40
84 85 0.821517 ATCCAACACAGCATGGCATG 59.178 50.000 22.99 22.99 43.62 4.06
85 86 0.251253 TCCAACACAGCATGGCATGA 60.251 50.000 30.69 3.53 43.62 3.07
86 87 0.604073 CCAACACAGCATGGCATGAA 59.396 50.000 30.69 0.00 43.62 2.57
87 88 1.001068 CCAACACAGCATGGCATGAAA 59.999 47.619 30.69 0.00 43.62 2.69
88 89 2.354303 CCAACACAGCATGGCATGAAAT 60.354 45.455 30.69 12.65 43.62 2.17
89 90 3.119065 CCAACACAGCATGGCATGAAATA 60.119 43.478 30.69 0.00 43.62 1.40
90 91 4.442332 CCAACACAGCATGGCATGAAATAT 60.442 41.667 30.69 9.70 43.62 1.28
91 92 4.316205 ACACAGCATGGCATGAAATATG 57.684 40.909 30.69 20.15 43.62 1.78
92 93 3.702548 ACACAGCATGGCATGAAATATGT 59.297 39.130 30.69 20.73 43.62 2.29
93 94 4.888823 ACACAGCATGGCATGAAATATGTA 59.111 37.500 30.69 0.00 43.62 2.29
94 95 5.537295 ACACAGCATGGCATGAAATATGTAT 59.463 36.000 30.69 12.33 43.62 2.29
95 96 5.861787 CACAGCATGGCATGAAATATGTATG 59.138 40.000 30.69 14.61 43.62 2.39
96 97 5.537295 ACAGCATGGCATGAAATATGTATGT 59.463 36.000 30.69 15.16 43.62 2.29
97 98 6.041182 ACAGCATGGCATGAAATATGTATGTT 59.959 34.615 30.69 0.00 43.62 2.71
98 99 7.231115 ACAGCATGGCATGAAATATGTATGTTA 59.769 33.333 30.69 0.00 43.62 2.41
99 100 8.083462 CAGCATGGCATGAAATATGTATGTTAA 58.917 33.333 30.69 0.00 0.00 2.01
100 101 8.809066 AGCATGGCATGAAATATGTATGTTAAT 58.191 29.630 30.69 0.00 0.00 1.40
101 102 9.426837 GCATGGCATGAAATATGTATGTTAATT 57.573 29.630 30.69 0.00 0.00 1.40
114 115 8.664669 ATGTATGTTAATTTTTCCAGTTCCCT 57.335 30.769 0.00 0.00 0.00 4.20
115 116 8.117813 TGTATGTTAATTTTTCCAGTTCCCTC 57.882 34.615 0.00 0.00 0.00 4.30
116 117 7.947890 TGTATGTTAATTTTTCCAGTTCCCTCT 59.052 33.333 0.00 0.00 0.00 3.69
117 118 7.855784 ATGTTAATTTTTCCAGTTCCCTCTT 57.144 32.000 0.00 0.00 0.00 2.85
118 119 7.669089 TGTTAATTTTTCCAGTTCCCTCTTT 57.331 32.000 0.00 0.00 0.00 2.52
119 120 8.084985 TGTTAATTTTTCCAGTTCCCTCTTTT 57.915 30.769 0.00 0.00 0.00 2.27
120 121 9.203163 TGTTAATTTTTCCAGTTCCCTCTTTTA 57.797 29.630 0.00 0.00 0.00 1.52
124 125 9.967451 AATTTTTCCAGTTCCCTCTTTTAAAAA 57.033 25.926 1.66 0.00 0.00 1.94
126 127 8.956533 TTTTCCAGTTCCCTCTTTTAAAAATG 57.043 30.769 1.66 0.00 0.00 2.32
127 128 6.096673 TCCAGTTCCCTCTTTTAAAAATGC 57.903 37.500 1.66 0.00 0.00 3.56
128 129 5.011635 TCCAGTTCCCTCTTTTAAAAATGCC 59.988 40.000 1.66 0.00 0.00 4.40
129 130 4.923281 CAGTTCCCTCTTTTAAAAATGCCG 59.077 41.667 1.66 0.00 0.00 5.69
130 131 3.586100 TCCCTCTTTTAAAAATGCCGC 57.414 42.857 1.66 0.00 0.00 6.53
131 132 2.894126 TCCCTCTTTTAAAAATGCCGCA 59.106 40.909 1.66 0.00 0.00 5.69
132 133 3.322254 TCCCTCTTTTAAAAATGCCGCAA 59.678 39.130 0.00 0.00 0.00 4.85
133 134 4.061596 CCCTCTTTTAAAAATGCCGCAAA 58.938 39.130 0.00 0.00 0.00 3.68
134 135 4.084066 CCCTCTTTTAAAAATGCCGCAAAC 60.084 41.667 0.00 0.00 0.00 2.93
135 136 4.509600 CCTCTTTTAAAAATGCCGCAAACA 59.490 37.500 0.00 0.00 0.00 2.83
136 137 5.333263 CCTCTTTTAAAAATGCCGCAAACAG 60.333 40.000 0.00 0.00 0.00 3.16
137 138 5.352284 TCTTTTAAAAATGCCGCAAACAGA 58.648 33.333 0.00 0.00 0.00 3.41
138 139 5.988561 TCTTTTAAAAATGCCGCAAACAGAT 59.011 32.000 0.00 0.00 0.00 2.90
139 140 5.588568 TTTAAAAATGCCGCAAACAGATG 57.411 34.783 0.00 0.00 0.00 2.90
140 141 2.818130 AAAATGCCGCAAACAGATGT 57.182 40.000 0.00 0.00 0.00 3.06
141 142 2.068837 AAATGCCGCAAACAGATGTG 57.931 45.000 0.00 0.00 0.00 3.21
142 143 0.388907 AATGCCGCAAACAGATGTGC 60.389 50.000 0.00 0.00 37.40 4.57
143 144 2.126346 GCCGCAAACAGATGTGCC 60.126 61.111 0.00 0.00 37.47 5.01
144 145 2.918345 GCCGCAAACAGATGTGCCA 61.918 57.895 0.00 0.00 37.47 4.92
145 146 1.885157 CCGCAAACAGATGTGCCAT 59.115 52.632 0.00 0.00 37.47 4.40
146 147 0.457166 CCGCAAACAGATGTGCCATG 60.457 55.000 0.00 0.00 37.47 3.66
147 148 0.241749 CGCAAACAGATGTGCCATGT 59.758 50.000 0.00 0.00 37.47 3.21
148 149 1.468127 CGCAAACAGATGTGCCATGTA 59.532 47.619 0.00 0.00 37.47 2.29
149 150 2.095314 CGCAAACAGATGTGCCATGTAA 60.095 45.455 0.00 0.00 37.47 2.41
150 151 3.427909 CGCAAACAGATGTGCCATGTAAT 60.428 43.478 0.00 0.00 37.47 1.89
151 152 4.107622 GCAAACAGATGTGCCATGTAATC 58.892 43.478 0.00 0.00 34.58 1.75
152 153 4.142315 GCAAACAGATGTGCCATGTAATCT 60.142 41.667 0.00 0.00 34.58 2.40
153 154 5.622914 GCAAACAGATGTGCCATGTAATCTT 60.623 40.000 0.00 0.00 34.58 2.40
154 155 5.824904 AACAGATGTGCCATGTAATCTTC 57.175 39.130 0.00 0.00 0.00 2.87
155 156 4.847198 ACAGATGTGCCATGTAATCTTCA 58.153 39.130 0.00 0.00 0.00 3.02
156 157 5.255687 ACAGATGTGCCATGTAATCTTCAA 58.744 37.500 0.00 0.00 0.00 2.69
157 158 5.711506 ACAGATGTGCCATGTAATCTTCAAA 59.288 36.000 0.00 0.00 0.00 2.69
158 159 6.209192 ACAGATGTGCCATGTAATCTTCAAAA 59.791 34.615 0.00 0.00 0.00 2.44
159 160 7.092079 CAGATGTGCCATGTAATCTTCAAAAA 58.908 34.615 0.00 0.00 0.00 1.94
184 185 8.567285 AAAAAGTGGGAGTGAGATAGTTATTG 57.433 34.615 0.00 0.00 0.00 1.90
185 186 7.496346 AAAGTGGGAGTGAGATAGTTATTGA 57.504 36.000 0.00 0.00 0.00 2.57
186 187 7.496346 AAGTGGGAGTGAGATAGTTATTGAA 57.504 36.000 0.00 0.00 0.00 2.69
187 188 7.496346 AGTGGGAGTGAGATAGTTATTGAAA 57.504 36.000 0.00 0.00 0.00 2.69
188 189 8.095452 AGTGGGAGTGAGATAGTTATTGAAAT 57.905 34.615 0.00 0.00 0.00 2.17
189 190 7.989741 AGTGGGAGTGAGATAGTTATTGAAATG 59.010 37.037 0.00 0.00 0.00 2.32
190 191 6.767902 TGGGAGTGAGATAGTTATTGAAATGC 59.232 38.462 0.00 0.00 0.00 3.56
191 192 6.767902 GGGAGTGAGATAGTTATTGAAATGCA 59.232 38.462 0.00 0.00 0.00 3.96
192 193 7.446625 GGGAGTGAGATAGTTATTGAAATGCAT 59.553 37.037 0.00 0.00 0.00 3.96
193 194 8.288208 GGAGTGAGATAGTTATTGAAATGCATG 58.712 37.037 0.00 0.00 0.00 4.06
194 195 8.743085 AGTGAGATAGTTATTGAAATGCATGT 57.257 30.769 0.00 0.00 0.00 3.21
195 196 9.836864 AGTGAGATAGTTATTGAAATGCATGTA 57.163 29.630 0.00 0.00 0.00 2.29
197 198 9.276590 TGAGATAGTTATTGAAATGCATGTAGG 57.723 33.333 0.00 0.00 0.00 3.18
198 199 8.103948 AGATAGTTATTGAAATGCATGTAGGC 57.896 34.615 0.00 0.00 0.00 3.93
199 200 7.941238 AGATAGTTATTGAAATGCATGTAGGCT 59.059 33.333 0.00 0.00 34.04 4.58
200 201 6.140303 AGTTATTGAAATGCATGTAGGCTG 57.860 37.500 0.00 0.00 34.04 4.85
201 202 5.068198 AGTTATTGAAATGCATGTAGGCTGG 59.932 40.000 0.00 0.00 34.04 4.85
202 203 2.804986 TGAAATGCATGTAGGCTGGA 57.195 45.000 0.00 0.00 34.04 3.86
203 204 2.646930 TGAAATGCATGTAGGCTGGAG 58.353 47.619 0.00 0.00 34.04 3.86
204 205 2.239402 TGAAATGCATGTAGGCTGGAGA 59.761 45.455 0.00 0.00 34.04 3.71
205 206 2.338577 AATGCATGTAGGCTGGAGAC 57.661 50.000 0.00 0.00 34.04 3.36
206 207 1.504912 ATGCATGTAGGCTGGAGACT 58.495 50.000 0.00 0.00 37.13 3.24
207 208 2.159179 TGCATGTAGGCTGGAGACTA 57.841 50.000 0.00 0.00 33.72 2.59
208 209 2.466846 TGCATGTAGGCTGGAGACTAA 58.533 47.619 0.00 0.00 37.40 2.24
209 210 2.837591 TGCATGTAGGCTGGAGACTAAA 59.162 45.455 0.00 0.00 37.40 1.85
210 211 3.263170 TGCATGTAGGCTGGAGACTAAAA 59.737 43.478 0.00 0.00 37.40 1.52
211 212 4.080356 TGCATGTAGGCTGGAGACTAAAAT 60.080 41.667 0.00 0.00 37.40 1.82
212 213 4.884164 GCATGTAGGCTGGAGACTAAAATT 59.116 41.667 0.00 0.00 37.40 1.82
213 214 5.358160 GCATGTAGGCTGGAGACTAAAATTT 59.642 40.000 0.00 0.00 37.40 1.82
214 215 6.458888 GCATGTAGGCTGGAGACTAAAATTTC 60.459 42.308 0.00 0.00 37.40 2.17
215 216 6.121776 TGTAGGCTGGAGACTAAAATTTCA 57.878 37.500 0.00 0.00 37.40 2.69
216 217 6.173339 TGTAGGCTGGAGACTAAAATTTCAG 58.827 40.000 0.00 0.00 37.40 3.02
217 218 5.248380 AGGCTGGAGACTAAAATTTCAGT 57.752 39.130 0.00 0.00 0.00 3.41
218 219 6.374417 AGGCTGGAGACTAAAATTTCAGTA 57.626 37.500 0.00 0.00 0.00 2.74
219 220 6.779860 AGGCTGGAGACTAAAATTTCAGTAA 58.220 36.000 0.00 0.00 0.00 2.24
220 221 7.231467 AGGCTGGAGACTAAAATTTCAGTAAA 58.769 34.615 0.00 0.00 0.00 2.01
221 222 7.724061 AGGCTGGAGACTAAAATTTCAGTAAAA 59.276 33.333 0.00 0.00 0.00 1.52
222 223 8.523658 GGCTGGAGACTAAAATTTCAGTAAAAT 58.476 33.333 0.00 0.00 39.30 1.82
250 251 9.612620 CAGCTTATAACACTAAAACTGAAAAGG 57.387 33.333 0.00 0.00 0.00 3.11
251 252 9.350951 AGCTTATAACACTAAAACTGAAAAGGT 57.649 29.630 0.00 0.00 0.00 3.50
252 253 9.961265 GCTTATAACACTAAAACTGAAAAGGTT 57.039 29.630 0.00 0.00 0.00 3.50
256 257 6.827586 ACACTAAAACTGAAAAGGTTGTCA 57.172 33.333 0.00 0.00 0.00 3.58
257 258 7.222000 ACACTAAAACTGAAAAGGTTGTCAA 57.778 32.000 0.00 0.00 0.00 3.18
258 259 7.662897 ACACTAAAACTGAAAAGGTTGTCAAA 58.337 30.769 0.00 0.00 0.00 2.69
259 260 7.597369 ACACTAAAACTGAAAAGGTTGTCAAAC 59.403 33.333 0.00 0.00 35.40 2.93
271 272 2.666272 TGTCAAACCTATGGCAACCA 57.334 45.000 0.00 0.00 38.19 3.67
272 273 2.950781 TGTCAAACCTATGGCAACCAA 58.049 42.857 0.00 0.00 36.95 3.67
273 274 2.890311 TGTCAAACCTATGGCAACCAAG 59.110 45.455 0.00 0.00 36.95 3.61
274 275 3.153919 GTCAAACCTATGGCAACCAAGA 58.846 45.455 0.00 0.00 36.95 3.02
275 276 3.191371 GTCAAACCTATGGCAACCAAGAG 59.809 47.826 0.00 0.00 36.95 2.85
276 277 1.839424 AACCTATGGCAACCAAGAGC 58.161 50.000 0.00 0.00 36.95 4.09
282 283 3.447040 GCAACCAAGAGCCAGCAA 58.553 55.556 0.00 0.00 0.00 3.91
283 284 1.288127 GCAACCAAGAGCCAGCAAG 59.712 57.895 0.00 0.00 0.00 4.01
284 285 1.174712 GCAACCAAGAGCCAGCAAGA 61.175 55.000 0.00 0.00 0.00 3.02
285 286 1.542492 CAACCAAGAGCCAGCAAGAT 58.458 50.000 0.00 0.00 0.00 2.40
286 287 1.891150 CAACCAAGAGCCAGCAAGATT 59.109 47.619 0.00 0.00 0.00 2.40
287 288 2.298163 CAACCAAGAGCCAGCAAGATTT 59.702 45.455 0.00 0.00 0.00 2.17
288 289 2.601905 ACCAAGAGCCAGCAAGATTTT 58.398 42.857 0.00 0.00 0.00 1.82
289 290 2.967887 ACCAAGAGCCAGCAAGATTTTT 59.032 40.909 0.00 0.00 0.00 1.94
317 318 4.365899 AAAAATATTTTCGGCGACCTCC 57.634 40.909 10.16 0.00 0.00 4.30
318 319 2.702592 AATATTTTCGGCGACCTCCA 57.297 45.000 10.16 0.00 0.00 3.86
319 320 1.949465 ATATTTTCGGCGACCTCCAC 58.051 50.000 10.16 0.00 0.00 4.02
320 321 0.108041 TATTTTCGGCGACCTCCACC 60.108 55.000 10.16 0.00 0.00 4.61
321 322 1.838073 ATTTTCGGCGACCTCCACCT 61.838 55.000 10.16 0.00 0.00 4.00
322 323 1.186917 TTTTCGGCGACCTCCACCTA 61.187 55.000 10.16 0.00 0.00 3.08
323 324 1.186917 TTTCGGCGACCTCCACCTAA 61.187 55.000 10.16 0.00 0.00 2.69
324 325 1.601419 TTCGGCGACCTCCACCTAAG 61.601 60.000 10.16 0.00 0.00 2.18
325 326 2.050350 CGGCGACCTCCACCTAAGA 61.050 63.158 0.00 0.00 0.00 2.10
326 327 1.601419 CGGCGACCTCCACCTAAGAA 61.601 60.000 0.00 0.00 0.00 2.52
327 328 0.175989 GGCGACCTCCACCTAAGAAG 59.824 60.000 0.00 0.00 0.00 2.85
328 329 0.896226 GCGACCTCCACCTAAGAAGT 59.104 55.000 0.00 0.00 0.00 3.01
329 330 1.135053 GCGACCTCCACCTAAGAAGTC 60.135 57.143 0.00 0.00 0.00 3.01
330 331 1.477295 CGACCTCCACCTAAGAAGTCC 59.523 57.143 0.00 0.00 0.00 3.85
331 332 2.822697 GACCTCCACCTAAGAAGTCCT 58.177 52.381 0.00 0.00 0.00 3.85
332 333 3.624205 CGACCTCCACCTAAGAAGTCCTA 60.624 52.174 0.00 0.00 0.00 2.94
333 334 3.955551 GACCTCCACCTAAGAAGTCCTAG 59.044 52.174 0.00 0.00 0.00 3.02
334 335 2.696187 CCTCCACCTAAGAAGTCCTAGC 59.304 54.545 0.00 0.00 0.00 3.42
335 336 3.628769 CCTCCACCTAAGAAGTCCTAGCT 60.629 52.174 0.00 0.00 0.00 3.32
336 337 4.027437 CTCCACCTAAGAAGTCCTAGCTT 58.973 47.826 0.00 0.00 0.00 3.74
337 338 4.426704 TCCACCTAAGAAGTCCTAGCTTT 58.573 43.478 0.00 0.00 0.00 3.51
338 339 4.844655 TCCACCTAAGAAGTCCTAGCTTTT 59.155 41.667 0.00 0.00 0.00 2.27
339 340 5.309806 TCCACCTAAGAAGTCCTAGCTTTTT 59.690 40.000 0.00 0.00 0.00 1.94
359 360 6.537453 TTTTTCCTTGTCCTGACATTCAAA 57.463 33.333 0.03 0.00 41.52 2.69
360 361 6.537453 TTTTCCTTGTCCTGACATTCAAAA 57.463 33.333 0.03 4.30 41.52 2.44
361 362 6.537453 TTTCCTTGTCCTGACATTCAAAAA 57.463 33.333 0.03 0.00 41.52 1.94
382 383 6.808008 AAAACACTGAGTGATGGTTATCAG 57.192 37.500 20.97 0.00 43.66 2.90
383 384 3.866651 ACACTGAGTGATGGTTATCAGC 58.133 45.455 20.97 0.00 43.66 4.26
384 385 3.201290 CACTGAGTGATGGTTATCAGCC 58.799 50.000 6.79 0.00 43.66 4.85
385 386 2.159043 ACTGAGTGATGGTTATCAGCCG 60.159 50.000 1.14 0.00 43.66 5.52
386 387 2.101415 CTGAGTGATGGTTATCAGCCGA 59.899 50.000 0.00 0.00 43.66 5.54
387 388 2.499693 TGAGTGATGGTTATCAGCCGAA 59.500 45.455 0.00 0.00 43.66 4.30
388 389 3.134623 TGAGTGATGGTTATCAGCCGAAT 59.865 43.478 0.00 0.00 43.66 3.34
389 390 4.343814 TGAGTGATGGTTATCAGCCGAATA 59.656 41.667 0.00 0.00 43.66 1.75
390 391 5.012046 TGAGTGATGGTTATCAGCCGAATAT 59.988 40.000 0.00 0.00 43.66 1.28
391 392 6.210584 TGAGTGATGGTTATCAGCCGAATATA 59.789 38.462 0.00 0.00 43.66 0.86
392 393 7.093333 TGAGTGATGGTTATCAGCCGAATATAT 60.093 37.037 0.00 0.00 43.66 0.86
393 394 7.624549 AGTGATGGTTATCAGCCGAATATATT 58.375 34.615 0.00 0.00 43.66 1.28
394 395 7.766278 AGTGATGGTTATCAGCCGAATATATTC 59.234 37.037 14.45 14.45 43.66 1.75
395 396 7.549134 GTGATGGTTATCAGCCGAATATATTCA 59.451 37.037 22.22 5.72 43.66 2.57
396 397 7.549134 TGATGGTTATCAGCCGAATATATTCAC 59.451 37.037 22.22 14.54 38.37 3.18
397 398 7.004555 TGGTTATCAGCCGAATATATTCACT 57.995 36.000 22.22 16.26 36.61 3.41
398 399 8.129496 TGGTTATCAGCCGAATATATTCACTA 57.871 34.615 22.22 7.91 36.61 2.74
399 400 8.590204 TGGTTATCAGCCGAATATATTCACTAA 58.410 33.333 22.22 8.18 36.61 2.24
400 401 9.088512 GGTTATCAGCCGAATATATTCACTAAG 57.911 37.037 22.22 10.03 36.61 2.18
401 402 9.088512 GTTATCAGCCGAATATATTCACTAAGG 57.911 37.037 22.22 15.99 36.61 2.69
402 403 6.037786 TCAGCCGAATATATTCACTAAGGG 57.962 41.667 22.22 15.41 36.61 3.95
403 404 4.631813 CAGCCGAATATATTCACTAAGGGC 59.368 45.833 22.37 22.37 36.62 5.19
404 405 4.286032 AGCCGAATATATTCACTAAGGGCA 59.714 41.667 27.38 0.00 37.89 5.36
405 406 5.045578 AGCCGAATATATTCACTAAGGGCAT 60.046 40.000 27.38 16.77 37.89 4.40
406 407 5.065218 GCCGAATATATTCACTAAGGGCATG 59.935 44.000 23.81 7.75 36.48 4.06
407 408 5.065218 CCGAATATATTCACTAAGGGCATGC 59.935 44.000 22.22 9.90 36.61 4.06
408 409 5.643348 CGAATATATTCACTAAGGGCATGCA 59.357 40.000 21.36 0.00 36.61 3.96
409 410 6.402550 CGAATATATTCACTAAGGGCATGCAC 60.403 42.308 21.36 17.78 36.61 4.57
410 411 1.382522 ATTCACTAAGGGCATGCACG 58.617 50.000 21.36 5.83 0.00 5.34
411 412 0.323302 TTCACTAAGGGCATGCACGA 59.677 50.000 21.36 8.82 0.00 4.35
412 413 0.323302 TCACTAAGGGCATGCACGAA 59.677 50.000 21.36 8.64 0.00 3.85
413 414 1.164411 CACTAAGGGCATGCACGAAA 58.836 50.000 21.36 5.86 0.00 3.46
414 415 1.131126 CACTAAGGGCATGCACGAAAG 59.869 52.381 21.36 17.64 0.00 2.62
415 416 1.003118 ACTAAGGGCATGCACGAAAGA 59.997 47.619 21.36 0.97 0.00 2.52
416 417 1.667724 CTAAGGGCATGCACGAAAGAG 59.332 52.381 21.36 7.57 0.00 2.85
417 418 0.036732 AAGGGCATGCACGAAAGAGA 59.963 50.000 21.36 0.00 0.00 3.10
418 419 0.392193 AGGGCATGCACGAAAGAGAG 60.392 55.000 21.36 0.00 0.00 3.20
419 420 1.427020 GGCATGCACGAAAGAGAGC 59.573 57.895 21.36 0.00 0.00 4.09
420 421 1.023513 GGCATGCACGAAAGAGAGCT 61.024 55.000 21.36 0.00 0.00 4.09
421 422 1.645034 GCATGCACGAAAGAGAGCTA 58.355 50.000 14.21 0.00 0.00 3.32
422 423 2.208431 GCATGCACGAAAGAGAGCTAT 58.792 47.619 14.21 0.00 0.00 2.97
423 424 2.611292 GCATGCACGAAAGAGAGCTATT 59.389 45.455 14.21 0.00 0.00 1.73
424 425 3.064545 GCATGCACGAAAGAGAGCTATTT 59.935 43.478 14.21 0.00 0.00 1.40
425 426 4.271049 GCATGCACGAAAGAGAGCTATTTA 59.729 41.667 14.21 0.00 0.00 1.40
426 427 5.049818 GCATGCACGAAAGAGAGCTATTTAT 60.050 40.000 14.21 0.00 0.00 1.40
427 428 6.512415 GCATGCACGAAAGAGAGCTATTTATT 60.512 38.462 14.21 0.00 0.00 1.40
428 429 6.985188 TGCACGAAAGAGAGCTATTTATTT 57.015 33.333 0.00 0.00 0.00 1.40
429 430 8.551205 CATGCACGAAAGAGAGCTATTTATTTA 58.449 33.333 0.00 0.00 0.00 1.40
430 431 8.662781 TGCACGAAAGAGAGCTATTTATTTAT 57.337 30.769 0.00 0.00 0.00 1.40
431 432 9.109393 TGCACGAAAGAGAGCTATTTATTTATT 57.891 29.630 0.00 0.00 0.00 1.40
432 433 9.374960 GCACGAAAGAGAGCTATTTATTTATTG 57.625 33.333 0.00 0.00 0.00 1.90
433 434 9.374960 CACGAAAGAGAGCTATTTATTTATTGC 57.625 33.333 0.00 0.00 0.00 3.56
434 435 9.331282 ACGAAAGAGAGCTATTTATTTATTGCT 57.669 29.630 0.00 0.00 38.90 3.91
455 456 9.696917 ATTGCTAAGGTTTCAGAATTTAGTTTG 57.303 29.630 9.56 0.00 0.00 2.93
456 457 8.458573 TGCTAAGGTTTCAGAATTTAGTTTGA 57.541 30.769 9.56 0.00 0.00 2.69
457 458 9.077885 TGCTAAGGTTTCAGAATTTAGTTTGAT 57.922 29.630 9.56 0.00 0.00 2.57
458 459 9.914131 GCTAAGGTTTCAGAATTTAGTTTGATT 57.086 29.630 9.56 0.00 0.00 2.57
512 513 9.651718 CCGAGAAATACAACTATAAATTCAAGC 57.348 33.333 0.00 0.00 0.00 4.01
518 519 9.646522 AATACAACTATAAATTCAAGCATCCCT 57.353 29.630 0.00 0.00 0.00 4.20
521 522 9.474313 ACAACTATAAATTCAAGCATCCCTAAA 57.526 29.630 0.00 0.00 0.00 1.85
522 523 9.736023 CAACTATAAATTCAAGCATCCCTAAAC 57.264 33.333 0.00 0.00 0.00 2.01
523 524 9.700831 AACTATAAATTCAAGCATCCCTAAACT 57.299 29.630 0.00 0.00 0.00 2.66
534 535 9.072294 CAAGCATCCCTAAACTAAATAAAAACG 57.928 33.333 0.00 0.00 0.00 3.60
536 537 9.452287 AGCATCCCTAAACTAAATAAAAACGTA 57.548 29.630 0.00 0.00 0.00 3.57
687 689 5.708230 TCGATATACCCACAAAATATTGGCC 59.292 40.000 0.00 0.00 41.01 5.36
688 690 5.391523 CGATATACCCACAAAATATTGGCCG 60.392 44.000 0.00 0.00 41.01 6.13
699 701 6.660094 ACAAAATATTGGCCGTAGTTCCTTTA 59.340 34.615 0.00 0.00 41.01 1.85
700 702 6.937436 AAATATTGGCCGTAGTTCCTTTAG 57.063 37.500 0.00 0.00 0.00 1.85
722 724 6.635030 AGTGGTTCCTTTGATGTAAGAAAC 57.365 37.500 0.00 0.00 0.00 2.78
763 772 3.117360 GGAATCAAATCATGGGAGGAGGT 60.117 47.826 0.00 0.00 0.00 3.85
814 834 2.093658 GGTTGCTCTCGTCCATCCTTTA 60.094 50.000 0.00 0.00 0.00 1.85
841 880 0.388294 TGCAGCATCTCTCATCTCCG 59.612 55.000 0.00 0.00 0.00 4.63
1150 5452 0.736325 CAAGGCGTACGTCCCTTCTG 60.736 60.000 20.24 10.53 39.36 3.02
1172 5497 0.035317 TCCTCATACATCATGCGCCC 59.965 55.000 4.18 0.00 34.35 6.13
1174 5510 1.904852 CTCATACATCATGCGCCCGC 61.905 60.000 4.18 5.60 42.35 6.13
1219 5558 5.608437 TGATCTTGCTATGGGACTAAGGATT 59.392 40.000 0.00 0.00 0.00 3.01
1241 5580 2.202987 GATGGGTGCAGGAGCTCG 60.203 66.667 7.83 0.00 42.74 5.03
1338 5677 0.105224 CTGCTGCAGCTGCTAGATCT 59.895 55.000 36.61 0.00 42.66 2.75
1409 5773 5.114081 ACAATCTACTTACCATGTAACGCC 58.886 41.667 0.00 0.00 0.00 5.68
1525 9350 4.613437 TCTCCCGTGGTTTAACCTATACT 58.387 43.478 15.68 0.00 39.58 2.12
1566 9434 0.953960 CGAGGTGCCTGGGTTGTTAC 60.954 60.000 0.00 0.00 0.00 2.50
1627 9496 4.116961 CGCTTGGAATCGGTGTATCTTTA 58.883 43.478 0.00 0.00 0.00 1.85
1629 9498 5.924254 CGCTTGGAATCGGTGTATCTTTATA 59.076 40.000 0.00 0.00 0.00 0.98
1630 9499 6.128902 CGCTTGGAATCGGTGTATCTTTATAC 60.129 42.308 0.00 0.00 38.80 1.47
1700 9571 1.937546 GCGCCCCTGTTCCATTTCAG 61.938 60.000 0.00 0.00 0.00 3.02
1728 9602 2.155732 CGAAACAACGATCCAGAGTGTG 59.844 50.000 0.00 0.00 35.09 3.82
1737 9612 4.160439 ACGATCCAGAGTGTGTTACATCAT 59.840 41.667 0.00 0.00 0.00 2.45
1783 9659 1.598430 GCTGCCGCAGTAAAACGAAAA 60.598 47.619 21.29 0.00 33.43 2.29
1812 9689 3.611766 ACGCTACTACAAAGCCAGAAT 57.388 42.857 0.00 0.00 36.60 2.40
1837 9715 5.459536 AGCTAAAGCCAGAAAAGGAAAAG 57.540 39.130 0.00 0.00 43.38 2.27
1838 9716 3.990469 GCTAAAGCCAGAAAAGGAAAAGC 59.010 43.478 0.00 0.00 34.31 3.51
1840 9718 1.981256 AGCCAGAAAAGGAAAAGCGA 58.019 45.000 0.00 0.00 0.00 4.93
1846 9724 3.791353 CAGAAAAGGAAAAGCGAACACAC 59.209 43.478 0.00 0.00 0.00 3.82
1847 9725 3.442273 AGAAAAGGAAAAGCGAACACACA 59.558 39.130 0.00 0.00 0.00 3.72
1886 9771 3.116707 AGGCCTATGGTGATACTACAGGT 60.117 47.826 1.29 0.00 0.00 4.00
1887 9772 3.006967 GGCCTATGGTGATACTACAGGTG 59.993 52.174 0.00 0.00 0.00 4.00
1950 9838 1.451567 CAGGATCTGGCCACAGCAG 60.452 63.158 0.00 0.00 44.54 4.24
2269 10165 2.560105 GGCTTTCCAGAATTCAACAGCT 59.440 45.455 8.44 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.701651 TGGATGTTGATTTACTGCAGAAGG 59.298 41.667 23.35 0.00 0.00 3.46
36 37 9.976511 CGTGGGAATTAAAGATAGAGTAATGTA 57.023 33.333 0.00 0.00 0.00 2.29
37 38 7.931948 CCGTGGGAATTAAAGATAGAGTAATGT 59.068 37.037 0.00 0.00 0.00 2.71
38 39 7.387948 CCCGTGGGAATTAAAGATAGAGTAATG 59.612 40.741 0.00 0.00 37.50 1.90
39 40 7.291651 TCCCGTGGGAATTAAAGATAGAGTAAT 59.708 37.037 4.80 0.00 42.05 1.89
40 41 6.612456 TCCCGTGGGAATTAAAGATAGAGTAA 59.388 38.462 4.80 0.00 42.05 2.24
41 42 6.138263 TCCCGTGGGAATTAAAGATAGAGTA 58.862 40.000 4.80 0.00 42.05 2.59
42 43 4.966805 TCCCGTGGGAATTAAAGATAGAGT 59.033 41.667 4.80 0.00 42.05 3.24
43 44 5.546621 TCCCGTGGGAATTAAAGATAGAG 57.453 43.478 4.80 0.00 42.05 2.43
57 58 1.377202 CTGTGTTGGATCCCGTGGG 60.377 63.158 9.90 0.00 0.00 4.61
58 59 2.040544 GCTGTGTTGGATCCCGTGG 61.041 63.158 9.90 0.00 0.00 4.94
59 60 0.677731 ATGCTGTGTTGGATCCCGTG 60.678 55.000 9.90 0.00 0.00 4.94
60 61 0.677731 CATGCTGTGTTGGATCCCGT 60.678 55.000 9.90 0.00 0.00 5.28
61 62 1.378882 CCATGCTGTGTTGGATCCCG 61.379 60.000 9.90 0.00 34.81 5.14
62 63 1.669999 GCCATGCTGTGTTGGATCCC 61.670 60.000 9.90 0.00 34.81 3.85
63 64 0.966875 TGCCATGCTGTGTTGGATCC 60.967 55.000 4.20 4.20 34.81 3.36
64 65 1.108776 ATGCCATGCTGTGTTGGATC 58.891 50.000 0.00 0.00 34.81 3.36
65 66 0.821517 CATGCCATGCTGTGTTGGAT 59.178 50.000 0.00 0.00 34.81 3.41
66 67 0.251253 TCATGCCATGCTGTGTTGGA 60.251 50.000 0.00 0.00 34.81 3.53
67 68 0.604073 TTCATGCCATGCTGTGTTGG 59.396 50.000 0.00 0.00 36.03 3.77
68 69 2.442212 TTTCATGCCATGCTGTGTTG 57.558 45.000 0.00 0.00 0.00 3.33
69 70 4.160814 ACATATTTCATGCCATGCTGTGTT 59.839 37.500 0.00 0.00 0.00 3.32
70 71 3.702548 ACATATTTCATGCCATGCTGTGT 59.297 39.130 0.00 0.00 0.00 3.72
71 72 4.316205 ACATATTTCATGCCATGCTGTG 57.684 40.909 0.00 0.00 0.00 3.66
72 73 5.537295 ACATACATATTTCATGCCATGCTGT 59.463 36.000 0.00 1.62 0.00 4.40
73 74 6.020971 ACATACATATTTCATGCCATGCTG 57.979 37.500 0.00 0.00 0.00 4.41
74 75 6.659745 AACATACATATTTCATGCCATGCT 57.340 33.333 0.00 0.00 0.00 3.79
75 76 8.991243 ATTAACATACATATTTCATGCCATGC 57.009 30.769 0.00 0.00 0.00 4.06
88 89 9.762381 AGGGAACTGGAAAAATTAACATACATA 57.238 29.630 0.00 0.00 41.13 2.29
89 90 8.664669 AGGGAACTGGAAAAATTAACATACAT 57.335 30.769 0.00 0.00 41.13 2.29
90 91 7.947890 AGAGGGAACTGGAAAAATTAACATACA 59.052 33.333 0.00 0.00 44.43 2.29
91 92 8.349568 AGAGGGAACTGGAAAAATTAACATAC 57.650 34.615 0.00 0.00 44.43 2.39
92 93 8.950007 AAGAGGGAACTGGAAAAATTAACATA 57.050 30.769 0.00 0.00 44.43 2.29
93 94 7.855784 AAGAGGGAACTGGAAAAATTAACAT 57.144 32.000 0.00 0.00 44.43 2.71
94 95 7.669089 AAAGAGGGAACTGGAAAAATTAACA 57.331 32.000 0.00 0.00 44.43 2.41
98 99 9.967451 TTTTTAAAAGAGGGAACTGGAAAAATT 57.033 25.926 0.14 0.00 44.43 1.82
100 101 9.389755 CATTTTTAAAAGAGGGAACTGGAAAAA 57.610 29.630 0.14 0.00 44.43 1.94
101 102 7.497579 GCATTTTTAAAAGAGGGAACTGGAAAA 59.502 33.333 0.14 0.00 44.43 2.29
102 103 6.989759 GCATTTTTAAAAGAGGGAACTGGAAA 59.010 34.615 0.14 0.00 44.43 3.13
103 104 6.463755 GGCATTTTTAAAAGAGGGAACTGGAA 60.464 38.462 0.14 0.00 44.43 3.53
104 105 5.011635 GGCATTTTTAAAAGAGGGAACTGGA 59.988 40.000 0.14 0.00 44.43 3.86
105 106 5.237815 GGCATTTTTAAAAGAGGGAACTGG 58.762 41.667 0.14 0.00 44.43 4.00
106 107 4.923281 CGGCATTTTTAAAAGAGGGAACTG 59.077 41.667 0.14 0.00 44.43 3.16
108 109 3.678072 GCGGCATTTTTAAAAGAGGGAAC 59.322 43.478 0.14 0.00 0.00 3.62
109 110 3.322254 TGCGGCATTTTTAAAAGAGGGAA 59.678 39.130 0.00 0.00 0.00 3.97
110 111 2.894126 TGCGGCATTTTTAAAAGAGGGA 59.106 40.909 0.00 0.00 0.00 4.20
111 112 3.311486 TGCGGCATTTTTAAAAGAGGG 57.689 42.857 0.00 0.00 0.00 4.30
112 113 4.509600 TGTTTGCGGCATTTTTAAAAGAGG 59.490 37.500 2.28 0.00 0.00 3.69
113 114 5.461737 TCTGTTTGCGGCATTTTTAAAAGAG 59.538 36.000 2.28 1.19 0.00 2.85
114 115 5.352284 TCTGTTTGCGGCATTTTTAAAAGA 58.648 33.333 2.28 1.54 0.00 2.52
115 116 5.649602 TCTGTTTGCGGCATTTTTAAAAG 57.350 34.783 2.28 0.00 0.00 2.27
116 117 5.525378 ACATCTGTTTGCGGCATTTTTAAAA 59.475 32.000 2.28 0.00 0.00 1.52
117 118 5.050499 CACATCTGTTTGCGGCATTTTTAAA 60.050 36.000 2.28 0.00 0.00 1.52
118 119 4.447054 CACATCTGTTTGCGGCATTTTTAA 59.553 37.500 2.28 0.00 0.00 1.52
119 120 3.986572 CACATCTGTTTGCGGCATTTTTA 59.013 39.130 2.28 0.00 0.00 1.52
120 121 2.801679 CACATCTGTTTGCGGCATTTTT 59.198 40.909 2.28 0.00 0.00 1.94
121 122 2.406130 CACATCTGTTTGCGGCATTTT 58.594 42.857 2.28 0.00 0.00 1.82
122 123 1.936203 GCACATCTGTTTGCGGCATTT 60.936 47.619 2.28 0.00 0.00 2.32
123 124 0.388907 GCACATCTGTTTGCGGCATT 60.389 50.000 2.28 0.00 0.00 3.56
124 125 1.213537 GCACATCTGTTTGCGGCAT 59.786 52.632 2.28 0.00 0.00 4.40
125 126 2.644418 GCACATCTGTTTGCGGCA 59.356 55.556 0.00 0.00 0.00 5.69
126 127 2.126346 GGCACATCTGTTTGCGGC 60.126 61.111 0.00 0.00 39.81 6.53
127 128 3.353600 TGGCACATCTGTTTGCGG 58.646 55.556 0.00 0.00 39.81 5.69
159 160 8.383175 TCAATAACTATCTCACTCCCACTTTTT 58.617 33.333 0.00 0.00 0.00 1.94
160 161 7.918076 TCAATAACTATCTCACTCCCACTTTT 58.082 34.615 0.00 0.00 0.00 2.27
161 162 7.496346 TCAATAACTATCTCACTCCCACTTT 57.504 36.000 0.00 0.00 0.00 2.66
162 163 7.496346 TTCAATAACTATCTCACTCCCACTT 57.504 36.000 0.00 0.00 0.00 3.16
163 164 7.496346 TTTCAATAACTATCTCACTCCCACT 57.504 36.000 0.00 0.00 0.00 4.00
164 165 7.254932 GCATTTCAATAACTATCTCACTCCCAC 60.255 40.741 0.00 0.00 0.00 4.61
165 166 6.767902 GCATTTCAATAACTATCTCACTCCCA 59.232 38.462 0.00 0.00 0.00 4.37
166 167 6.767902 TGCATTTCAATAACTATCTCACTCCC 59.232 38.462 0.00 0.00 0.00 4.30
167 168 7.792374 TGCATTTCAATAACTATCTCACTCC 57.208 36.000 0.00 0.00 0.00 3.85
168 169 8.834465 ACATGCATTTCAATAACTATCTCACTC 58.166 33.333 0.00 0.00 0.00 3.51
169 170 8.743085 ACATGCATTTCAATAACTATCTCACT 57.257 30.769 0.00 0.00 0.00 3.41
171 172 9.276590 CCTACATGCATTTCAATAACTATCTCA 57.723 33.333 0.00 0.00 0.00 3.27
172 173 8.233190 GCCTACATGCATTTCAATAACTATCTC 58.767 37.037 0.00 0.00 0.00 2.75
173 174 7.941238 AGCCTACATGCATTTCAATAACTATCT 59.059 33.333 0.00 0.00 0.00 1.98
174 175 8.019669 CAGCCTACATGCATTTCAATAACTATC 58.980 37.037 0.00 0.00 0.00 2.08
175 176 7.040201 CCAGCCTACATGCATTTCAATAACTAT 60.040 37.037 0.00 0.00 0.00 2.12
176 177 6.262944 CCAGCCTACATGCATTTCAATAACTA 59.737 38.462 0.00 0.00 0.00 2.24
177 178 5.068198 CCAGCCTACATGCATTTCAATAACT 59.932 40.000 0.00 0.00 0.00 2.24
178 179 5.067674 TCCAGCCTACATGCATTTCAATAAC 59.932 40.000 0.00 0.00 0.00 1.89
179 180 5.199723 TCCAGCCTACATGCATTTCAATAA 58.800 37.500 0.00 0.00 0.00 1.40
180 181 4.790937 TCCAGCCTACATGCATTTCAATA 58.209 39.130 0.00 0.00 0.00 1.90
181 182 3.634504 TCCAGCCTACATGCATTTCAAT 58.365 40.909 0.00 0.00 0.00 2.57
182 183 3.018856 CTCCAGCCTACATGCATTTCAA 58.981 45.455 0.00 0.00 0.00 2.69
183 184 2.239402 TCTCCAGCCTACATGCATTTCA 59.761 45.455 0.00 0.00 0.00 2.69
184 185 2.615912 GTCTCCAGCCTACATGCATTTC 59.384 50.000 0.00 0.00 0.00 2.17
185 186 2.240667 AGTCTCCAGCCTACATGCATTT 59.759 45.455 0.00 0.00 0.00 2.32
186 187 1.842562 AGTCTCCAGCCTACATGCATT 59.157 47.619 0.00 0.00 0.00 3.56
187 188 1.504912 AGTCTCCAGCCTACATGCAT 58.495 50.000 0.00 0.00 0.00 3.96
188 189 2.159179 TAGTCTCCAGCCTACATGCA 57.841 50.000 0.00 0.00 0.00 3.96
189 190 3.543680 TTTAGTCTCCAGCCTACATGC 57.456 47.619 0.00 0.00 0.00 4.06
190 191 6.599244 TGAAATTTTAGTCTCCAGCCTACATG 59.401 38.462 0.00 0.00 0.00 3.21
191 192 6.721318 TGAAATTTTAGTCTCCAGCCTACAT 58.279 36.000 0.00 0.00 0.00 2.29
192 193 6.121776 TGAAATTTTAGTCTCCAGCCTACA 57.878 37.500 0.00 0.00 0.00 2.74
193 194 6.174049 ACTGAAATTTTAGTCTCCAGCCTAC 58.826 40.000 9.67 0.00 0.00 3.18
194 195 6.374417 ACTGAAATTTTAGTCTCCAGCCTA 57.626 37.500 9.67 0.00 0.00 3.93
195 196 5.248380 ACTGAAATTTTAGTCTCCAGCCT 57.752 39.130 9.67 0.00 0.00 4.58
196 197 7.448748 TTTACTGAAATTTTAGTCTCCAGCC 57.551 36.000 17.95 0.00 0.00 4.85
197 198 9.914131 AATTTTACTGAAATTTTAGTCTCCAGC 57.086 29.630 17.95 0.00 43.65 4.85
224 225 9.612620 CCTTTTCAGTTTTAGTGTTATAAGCTG 57.387 33.333 0.00 0.00 0.00 4.24
225 226 9.350951 ACCTTTTCAGTTTTAGTGTTATAAGCT 57.649 29.630 0.00 0.00 0.00 3.74
226 227 9.961265 AACCTTTTCAGTTTTAGTGTTATAAGC 57.039 29.630 0.00 0.00 0.00 3.09
230 231 8.962679 TGACAACCTTTTCAGTTTTAGTGTTAT 58.037 29.630 0.00 0.00 0.00 1.89
231 232 8.338072 TGACAACCTTTTCAGTTTTAGTGTTA 57.662 30.769 0.00 0.00 0.00 2.41
232 233 7.222000 TGACAACCTTTTCAGTTTTAGTGTT 57.778 32.000 0.00 0.00 0.00 3.32
233 234 6.827586 TGACAACCTTTTCAGTTTTAGTGT 57.172 33.333 0.00 0.00 0.00 3.55
234 235 7.949186 GTTTGACAACCTTTTCAGTTTTAGTG 58.051 34.615 0.00 0.00 0.00 2.74
250 251 2.625790 TGGTTGCCATAGGTTTGACAAC 59.374 45.455 0.00 0.00 37.31 3.32
251 252 2.950781 TGGTTGCCATAGGTTTGACAA 58.049 42.857 0.00 0.00 0.00 3.18
252 253 2.666272 TGGTTGCCATAGGTTTGACA 57.334 45.000 0.00 0.00 0.00 3.58
253 254 3.153919 TCTTGGTTGCCATAGGTTTGAC 58.846 45.455 0.00 0.00 31.53 3.18
254 255 3.420893 CTCTTGGTTGCCATAGGTTTGA 58.579 45.455 0.00 0.00 31.53 2.69
255 256 2.094545 GCTCTTGGTTGCCATAGGTTTG 60.095 50.000 0.00 0.00 31.53 2.93
256 257 2.171003 GCTCTTGGTTGCCATAGGTTT 58.829 47.619 0.00 0.00 31.53 3.27
257 258 1.839424 GCTCTTGGTTGCCATAGGTT 58.161 50.000 0.00 0.00 31.53 3.50
258 259 3.577389 GCTCTTGGTTGCCATAGGT 57.423 52.632 0.00 0.00 31.53 3.08
265 266 1.174712 TCTTGCTGGCTCTTGGTTGC 61.175 55.000 0.00 0.00 0.00 4.17
266 267 1.542492 ATCTTGCTGGCTCTTGGTTG 58.458 50.000 0.00 0.00 0.00 3.77
267 268 2.299326 AATCTTGCTGGCTCTTGGTT 57.701 45.000 0.00 0.00 0.00 3.67
268 269 2.299326 AAATCTTGCTGGCTCTTGGT 57.701 45.000 0.00 0.00 0.00 3.67
269 270 3.672767 AAAAATCTTGCTGGCTCTTGG 57.327 42.857 0.00 0.00 0.00 3.61
296 297 3.759618 TGGAGGTCGCCGAAAATATTTTT 59.240 39.130 14.45 0.00 0.00 1.94
297 298 3.128068 GTGGAGGTCGCCGAAAATATTTT 59.872 43.478 13.24 13.24 0.00 1.82
298 299 2.681344 GTGGAGGTCGCCGAAAATATTT 59.319 45.455 0.00 0.00 0.00 1.40
299 300 2.285977 GTGGAGGTCGCCGAAAATATT 58.714 47.619 0.00 0.00 0.00 1.28
300 301 1.474498 GGTGGAGGTCGCCGAAAATAT 60.474 52.381 0.00 0.00 36.17 1.28
301 302 0.108041 GGTGGAGGTCGCCGAAAATA 60.108 55.000 0.00 0.00 36.17 1.40
302 303 1.376812 GGTGGAGGTCGCCGAAAAT 60.377 57.895 0.00 0.00 36.17 1.82
303 304 2.031465 GGTGGAGGTCGCCGAAAA 59.969 61.111 0.00 0.00 36.17 2.29
308 309 0.175989 CTTCTTAGGTGGAGGTCGCC 59.824 60.000 0.00 0.00 46.19 5.54
309 310 0.896226 ACTTCTTAGGTGGAGGTCGC 59.104 55.000 0.00 0.00 0.00 5.19
310 311 1.477295 GGACTTCTTAGGTGGAGGTCG 59.523 57.143 0.00 0.00 39.61 4.79
311 312 2.822697 AGGACTTCTTAGGTGGAGGTC 58.177 52.381 0.00 0.00 38.52 3.85
312 313 3.882515 GCTAGGACTTCTTAGGTGGAGGT 60.883 52.174 0.00 0.00 0.00 3.85
313 314 2.696187 GCTAGGACTTCTTAGGTGGAGG 59.304 54.545 0.00 0.00 0.00 4.30
314 315 3.637769 AGCTAGGACTTCTTAGGTGGAG 58.362 50.000 0.00 0.00 35.40 3.86
315 316 3.759815 AGCTAGGACTTCTTAGGTGGA 57.240 47.619 0.00 0.00 35.40 4.02
316 317 4.828072 AAAGCTAGGACTTCTTAGGTGG 57.172 45.455 1.30 0.00 36.57 4.61
336 337 6.537453 TTTGAATGTCAGGACAAGGAAAAA 57.463 33.333 6.17 1.63 45.41 1.94
337 338 6.537453 TTTTGAATGTCAGGACAAGGAAAA 57.463 33.333 6.17 8.47 45.41 2.29
338 339 6.537453 TTTTTGAATGTCAGGACAAGGAAA 57.463 33.333 6.17 3.21 45.41 3.13
358 359 6.294176 GCTGATAACCATCACTCAGTGTTTTT 60.294 38.462 4.28 0.00 36.22 1.94
359 360 5.182001 GCTGATAACCATCACTCAGTGTTTT 59.818 40.000 4.28 0.00 36.22 2.43
360 361 4.697352 GCTGATAACCATCACTCAGTGTTT 59.303 41.667 4.28 0.00 36.22 2.83
361 362 4.256920 GCTGATAACCATCACTCAGTGTT 58.743 43.478 4.28 0.00 36.22 3.32
362 363 3.369892 GGCTGATAACCATCACTCAGTGT 60.370 47.826 4.28 0.00 36.22 3.55
363 364 3.201290 GGCTGATAACCATCACTCAGTG 58.799 50.000 0.00 0.00 36.22 3.66
364 365 2.159043 CGGCTGATAACCATCACTCAGT 60.159 50.000 0.00 0.00 36.22 3.41
365 366 2.101415 TCGGCTGATAACCATCACTCAG 59.899 50.000 0.00 0.00 36.22 3.35
366 367 2.107366 TCGGCTGATAACCATCACTCA 58.893 47.619 0.00 0.00 36.22 3.41
367 368 2.890808 TCGGCTGATAACCATCACTC 57.109 50.000 0.00 0.00 36.22 3.51
368 369 3.845781 ATTCGGCTGATAACCATCACT 57.154 42.857 0.00 0.00 36.22 3.41
369 370 7.549134 TGAATATATTCGGCTGATAACCATCAC 59.451 37.037 18.35 0.00 39.62 3.06
370 371 7.549134 GTGAATATATTCGGCTGATAACCATCA 59.451 37.037 18.35 0.00 39.62 3.07
371 372 7.766278 AGTGAATATATTCGGCTGATAACCATC 59.234 37.037 18.35 0.00 39.62 3.51
372 373 7.624549 AGTGAATATATTCGGCTGATAACCAT 58.375 34.615 18.35 0.00 39.62 3.55
373 374 7.004555 AGTGAATATATTCGGCTGATAACCA 57.995 36.000 18.35 0.00 39.62 3.67
374 375 8.997621 TTAGTGAATATATTCGGCTGATAACC 57.002 34.615 22.30 0.92 39.62 2.85
375 376 9.088512 CCTTAGTGAATATATTCGGCTGATAAC 57.911 37.037 22.30 13.12 39.62 1.89
376 377 8.258007 CCCTTAGTGAATATATTCGGCTGATAA 58.742 37.037 22.30 13.32 39.62 1.75
377 378 7.632898 GCCCTTAGTGAATATATTCGGCTGATA 60.633 40.741 22.49 12.43 39.62 2.15
378 379 6.644347 CCCTTAGTGAATATATTCGGCTGAT 58.356 40.000 22.30 9.37 39.62 2.90
379 380 5.568825 GCCCTTAGTGAATATATTCGGCTGA 60.569 44.000 22.49 16.86 39.62 4.26
380 381 4.631813 GCCCTTAGTGAATATATTCGGCTG 59.368 45.833 22.49 12.56 39.62 4.85
381 382 4.286032 TGCCCTTAGTGAATATATTCGGCT 59.714 41.667 26.46 23.11 39.62 5.52
382 383 4.575885 TGCCCTTAGTGAATATATTCGGC 58.424 43.478 22.77 22.77 39.62 5.54
383 384 5.065218 GCATGCCCTTAGTGAATATATTCGG 59.935 44.000 18.35 13.52 39.62 4.30
384 385 5.643348 TGCATGCCCTTAGTGAATATATTCG 59.357 40.000 16.68 5.82 39.62 3.34
385 386 6.402550 CGTGCATGCCCTTAGTGAATATATTC 60.403 42.308 16.68 17.09 37.31 1.75
386 387 5.412594 CGTGCATGCCCTTAGTGAATATATT 59.587 40.000 16.68 0.00 0.00 1.28
387 388 4.937620 CGTGCATGCCCTTAGTGAATATAT 59.062 41.667 16.68 0.00 0.00 0.86
388 389 4.039852 TCGTGCATGCCCTTAGTGAATATA 59.960 41.667 16.68 0.00 0.00 0.86
389 390 3.141398 CGTGCATGCCCTTAGTGAATAT 58.859 45.455 16.68 0.00 0.00 1.28
390 391 2.169561 TCGTGCATGCCCTTAGTGAATA 59.830 45.455 16.68 0.00 0.00 1.75
391 392 1.065491 TCGTGCATGCCCTTAGTGAAT 60.065 47.619 16.68 0.00 0.00 2.57
392 393 0.323302 TCGTGCATGCCCTTAGTGAA 59.677 50.000 16.68 0.00 0.00 3.18
393 394 0.323302 TTCGTGCATGCCCTTAGTGA 59.677 50.000 16.68 0.00 0.00 3.41
394 395 1.131126 CTTTCGTGCATGCCCTTAGTG 59.869 52.381 16.68 0.00 0.00 2.74
395 396 1.003118 TCTTTCGTGCATGCCCTTAGT 59.997 47.619 16.68 0.00 0.00 2.24
396 397 1.667724 CTCTTTCGTGCATGCCCTTAG 59.332 52.381 16.68 6.42 0.00 2.18
397 398 1.277842 TCTCTTTCGTGCATGCCCTTA 59.722 47.619 16.68 0.00 0.00 2.69
398 399 0.036732 TCTCTTTCGTGCATGCCCTT 59.963 50.000 16.68 0.00 0.00 3.95
399 400 0.392193 CTCTCTTTCGTGCATGCCCT 60.392 55.000 16.68 0.00 0.00 5.19
400 401 1.986575 GCTCTCTTTCGTGCATGCCC 61.987 60.000 16.68 1.56 0.00 5.36
401 402 1.023513 AGCTCTCTTTCGTGCATGCC 61.024 55.000 16.68 5.63 0.00 4.40
402 403 1.645034 TAGCTCTCTTTCGTGCATGC 58.355 50.000 11.82 11.82 0.00 4.06
403 404 4.871993 AAATAGCTCTCTTTCGTGCATG 57.128 40.909 0.00 0.00 0.00 4.06
404 405 7.559590 AAATAAATAGCTCTCTTTCGTGCAT 57.440 32.000 0.00 0.00 0.00 3.96
405 406 6.985188 AAATAAATAGCTCTCTTTCGTGCA 57.015 33.333 0.00 0.00 0.00 4.57
406 407 9.374960 CAATAAATAAATAGCTCTCTTTCGTGC 57.625 33.333 0.00 0.00 0.00 5.34
407 408 9.374960 GCAATAAATAAATAGCTCTCTTTCGTG 57.625 33.333 0.00 0.00 0.00 4.35
408 409 9.331282 AGCAATAAATAAATAGCTCTCTTTCGT 57.669 29.630 0.00 0.00 0.00 3.85
429 430 9.696917 CAAACTAAATTCTGAAACCTTAGCAAT 57.303 29.630 13.10 3.27 0.00 3.56
430 431 8.908903 TCAAACTAAATTCTGAAACCTTAGCAA 58.091 29.630 13.10 0.00 0.00 3.91
431 432 8.458573 TCAAACTAAATTCTGAAACCTTAGCA 57.541 30.769 13.10 0.00 0.00 3.49
432 433 9.914131 AATCAAACTAAATTCTGAAACCTTAGC 57.086 29.630 13.10 0.00 0.00 3.09
486 487 9.651718 GCTTGAATTTATAGTTGTATTTCTCGG 57.348 33.333 0.00 0.00 0.00 4.63
492 493 9.646522 AGGGATGCTTGAATTTATAGTTGTATT 57.353 29.630 0.00 0.00 0.00 1.89
495 496 9.474313 TTTAGGGATGCTTGAATTTATAGTTGT 57.526 29.630 0.00 0.00 0.00 3.32
496 497 9.736023 GTTTAGGGATGCTTGAATTTATAGTTG 57.264 33.333 0.00 0.00 0.00 3.16
497 498 9.700831 AGTTTAGGGATGCTTGAATTTATAGTT 57.299 29.630 0.00 0.00 0.00 2.24
508 509 9.072294 CGTTTTTATTTAGTTTAGGGATGCTTG 57.928 33.333 0.00 0.00 0.00 4.01
509 510 8.799367 ACGTTTTTATTTAGTTTAGGGATGCTT 58.201 29.630 0.00 0.00 0.00 3.91
510 511 8.344446 ACGTTTTTATTTAGTTTAGGGATGCT 57.656 30.769 0.00 0.00 0.00 3.79
578 579 8.503458 TCAAATGTCAAATGTTTCCATGTTTT 57.497 26.923 0.00 0.00 0.00 2.43
637 639 5.990120 ATTGGTGTACGTACTAACTTCCT 57.010 39.130 25.12 1.75 0.00 3.36
640 642 8.243426 TCGAATTATTGGTGTACGTACTAACTT 58.757 33.333 25.12 10.85 0.00 2.66
649 651 7.062605 GTGGGTATATCGAATTATTGGTGTACG 59.937 40.741 0.00 0.00 0.00 3.67
681 683 3.606687 CACTAAAGGAACTACGGCCAAT 58.393 45.455 2.24 0.00 38.49 3.16
682 684 2.289819 CCACTAAAGGAACTACGGCCAA 60.290 50.000 2.24 0.00 38.49 4.52
687 689 4.532314 AGGAACCACTAAAGGAACTACG 57.468 45.455 0.00 0.00 38.49 3.51
688 690 6.293698 TCAAAGGAACCACTAAAGGAACTAC 58.706 40.000 0.00 0.00 38.49 2.73
699 701 6.126409 TGTTTCTTACATCAAAGGAACCACT 58.874 36.000 5.54 0.00 42.17 4.00
700 702 6.385649 TGTTTCTTACATCAAAGGAACCAC 57.614 37.500 5.54 0.00 42.17 4.16
722 724 5.407407 TTCCCTTTGTCTCTACTAGCTTG 57.593 43.478 0.00 0.00 0.00 4.01
763 772 3.655972 AGAGGAATAAGGATAGGGCCA 57.344 47.619 6.18 0.00 0.00 5.36
814 834 2.157738 GAGAGATGCTGCACTTTTGGT 58.842 47.619 3.57 0.00 0.00 3.67
841 880 4.099419 GGAGGAGGAAGAGAAGATGAAGAC 59.901 50.000 0.00 0.00 0.00 3.01
1150 5452 2.031682 GGCGCATGATGTATGAGGAAAC 60.032 50.000 10.83 0.00 39.21 2.78
1219 5558 1.917495 CTCCTGCACCCATCCATCA 59.083 57.895 0.00 0.00 0.00 3.07
1241 5580 4.650377 GCCATCTCCATCCCGCCC 62.650 72.222 0.00 0.00 0.00 6.13
1338 5677 2.145536 GTGCATGCATGACCGATGATA 58.854 47.619 30.64 1.38 33.31 2.15
1409 5773 1.276421 ACAAAGACCCTCGATCAGGTG 59.724 52.381 6.65 1.81 41.51 4.00
1525 9350 5.524281 TCGCAAGTTGATAGTACAAACACAA 59.476 36.000 7.16 0.00 39.48 3.33
1662 9533 4.749245 CGCAGCCTTTTTCTTCTAAGAA 57.251 40.909 1.00 1.00 42.91 2.52
1700 9571 4.210537 TCTGGATCGTTGTTTCGTTTCTTC 59.789 41.667 0.00 0.00 0.00 2.87
1728 9602 3.482472 CGTCGTGAGCTACATGATGTAAC 59.518 47.826 6.75 2.23 44.78 2.50
1737 9612 1.873863 CTGTCCGTCGTGAGCTACA 59.126 57.895 0.00 0.00 0.00 2.74
1812 9689 7.148069 GCTTTTCCTTTTCTGGCTTTAGCTATA 60.148 37.037 0.00 0.00 41.70 1.31
1837 9715 0.508641 CAGTAGCTGTGTGTGTTCGC 59.491 55.000 0.00 0.00 0.00 4.70
1838 9716 0.508641 GCAGTAGCTGTGTGTGTTCG 59.491 55.000 0.00 0.00 37.91 3.95
1860 9738 0.969894 GTATCACCATAGGCCTCGCT 59.030 55.000 9.68 0.00 0.00 4.93
1886 9771 1.278985 CCTCTGGTATTGGACAGTGCA 59.721 52.381 0.00 0.00 36.17 4.57
1887 9772 2.014068 GCCTCTGGTATTGGACAGTGC 61.014 57.143 0.00 0.00 36.17 4.40
1895 9782 5.882557 AGACACATTTTAGCCTCTGGTATTG 59.117 40.000 0.00 0.00 0.00 1.90
1898 9786 4.081087 GGAGACACATTTTAGCCTCTGGTA 60.081 45.833 0.00 0.00 0.00 3.25
1950 9838 2.498726 CGAGAAGCCCTCCTCTGC 59.501 66.667 0.00 0.00 38.71 4.26
2260 10156 1.946768 GCCTGTGTTGTAGCTGTTGAA 59.053 47.619 0.00 0.00 0.00 2.69
2269 10165 6.000840 TCATTTATTCAGTGCCTGTGTTGTA 58.999 36.000 2.68 0.00 32.61 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.