Multiple sequence alignment - TraesCS3B01G600500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G600500 chr3B 100.000 2864 0 0 1 2864 821215058 821212195 0.000000e+00 5289.0
1 TraesCS3B01G600500 chr3B 90.126 1904 144 24 983 2864 7319061 7320942 0.000000e+00 2435.0
2 TraesCS3B01G600500 chr3B 97.015 268 8 0 1 268 17350553 17350286 4.350000e-123 451.0
3 TraesCS3B01G600500 chr3B 96.337 273 10 0 1 273 58625908 58625636 1.570000e-122 449.0
4 TraesCS3B01G600500 chr3B 95.971 273 11 0 1 273 58640935 58640663 7.280000e-121 444.0
5 TraesCS3B01G600500 chr2D 91.173 1892 133 11 992 2864 618324317 618322441 0.000000e+00 2538.0
6 TraesCS3B01G600500 chr2D 89.144 1916 140 30 983 2864 13522179 13520298 0.000000e+00 2324.0
7 TraesCS3B01G600500 chr2D 91.111 45 1 2 611 655 618324785 618324744 1.110000e-04 58.4
8 TraesCS3B01G600500 chr7A 89.565 2022 149 29 893 2864 660572147 660574156 0.000000e+00 2508.0
9 TraesCS3B01G600500 chr7A 90.197 1928 144 16 969 2864 542714768 542716682 0.000000e+00 2471.0
10 TraesCS3B01G600500 chr7A 80.021 1902 326 34 996 2864 60710784 60708904 0.000000e+00 1358.0
11 TraesCS3B01G600500 chr1A 90.410 1929 139 19 969 2864 564159813 564157898 0.000000e+00 2495.0
12 TraesCS3B01G600500 chr3A 89.261 2030 153 28 893 2864 352470372 352472394 0.000000e+00 2481.0
13 TraesCS3B01G600500 chr3A 89.990 1928 147 18 969 2864 144697884 144699797 0.000000e+00 2449.0
14 TraesCS3B01G600500 chr3A 87.062 371 42 5 388 755 453804933 453804566 5.710000e-112 414.0
15 TraesCS3B01G600500 chr3A 84.615 65 6 3 616 676 703938628 703938564 8.570000e-06 62.1
16 TraesCS3B01G600500 chr6A 89.219 2022 150 30 893 2864 435090253 435088250 0.000000e+00 2464.0
17 TraesCS3B01G600500 chr6A 89.639 1940 143 25 969 2864 603905910 603907835 0.000000e+00 2416.0
18 TraesCS3B01G600500 chr6A 90.000 850 67 9 1549 2389 367765308 367764468 0.000000e+00 1083.0
19 TraesCS3B01G600500 chr5D 89.168 1994 167 23 893 2864 34210592 34212558 0.000000e+00 2440.0
20 TraesCS3B01G600500 chr5D 95.357 280 11 1 1 278 450608787 450609066 7.280000e-121 444.0
21 TraesCS3B01G600500 chr5D 89.362 47 5 0 611 657 34210090 34210136 3.080000e-05 60.2
22 TraesCS3B01G600500 chr4B 89.916 1904 148 24 983 2864 595724457 595722576 0.000000e+00 2412.0
23 TraesCS3B01G600500 chr4B 87.500 1216 101 23 969 2148 167378053 167376853 0.000000e+00 1356.0
24 TraesCS3B01G600500 chr4B 79.143 887 164 14 993 1870 16676675 16677549 6.830000e-166 593.0
25 TraesCS3B01G600500 chr3D 89.639 1911 146 30 983 2864 376077929 376076042 0.000000e+00 2385.0
26 TraesCS3B01G600500 chr3D 87.678 422 23 6 265 674 595671715 595671311 5.590000e-127 464.0
27 TraesCS3B01G600500 chr3D 83.077 65 8 3 611 672 571677098 571677034 3.990000e-04 56.5
28 TraesCS3B01G600500 chr6B 89.108 1928 151 17 981 2864 18465698 18467610 0.000000e+00 2342.0
29 TraesCS3B01G600500 chr6B 91.111 45 1 2 611 655 18463956 18463915 1.110000e-04 58.4
30 TraesCS3B01G600500 chr5A 89.081 1905 150 30 983 2864 115997175 115995306 0.000000e+00 2313.0
31 TraesCS3B01G600500 chr2B 87.996 1916 158 32 983 2864 796754972 796753095 0.000000e+00 2198.0
32 TraesCS3B01G600500 chr2B 89.843 1723 130 23 1163 2864 33473351 33471653 0.000000e+00 2170.0
33 TraesCS3B01G600500 chr2B 96.296 270 9 1 1 269 583409732 583410001 2.620000e-120 442.0
34 TraesCS3B01G600500 chr2B 94.097 288 14 3 1 287 774874357 774874642 4.380000e-118 435.0
35 TraesCS3B01G600500 chr2A 88.308 1608 142 26 983 2567 613241190 613239606 0.000000e+00 1886.0
36 TraesCS3B01G600500 chr2A 97.358 265 6 1 1 265 162455637 162455900 1.570000e-122 449.0
37 TraesCS3B01G600500 chr1B 90.900 1055 83 9 826 1876 551242120 551241075 0.000000e+00 1404.0
38 TraesCS3B01G600500 chr1B 90.909 979 76 10 1897 2864 551240758 551239782 0.000000e+00 1303.0
39 TraesCS3B01G600500 chr1B 97.761 268 5 1 1 268 687415210 687414944 7.230000e-126 460.0
40 TraesCS3B01G600500 chr1B 88.696 230 23 2 590 816 551242283 551242054 7.820000e-71 278.0
41 TraesCS3B01G600500 chr4A 92.655 885 54 4 1989 2864 147534739 147533857 0.000000e+00 1264.0
42 TraesCS3B01G600500 chr4A 89.610 1001 82 10 969 1958 147535731 147534742 0.000000e+00 1253.0
43 TraesCS3B01G600500 chr5B 96.654 269 9 0 1 269 461569487 461569219 5.630000e-122 448.0
44 TraesCS3B01G600500 chr4D 83.636 495 59 15 265 755 421315442 421315918 2.020000e-121 446.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G600500 chr3B 821212195 821215058 2863 True 5289.0 5289 100.000000 1 2864 1 chr3B.!!$R4 2863
1 TraesCS3B01G600500 chr3B 7319061 7320942 1881 False 2435.0 2435 90.126000 983 2864 1 chr3B.!!$F1 1881
2 TraesCS3B01G600500 chr2D 13520298 13522179 1881 True 2324.0 2324 89.144000 983 2864 1 chr2D.!!$R1 1881
3 TraesCS3B01G600500 chr2D 618322441 618324785 2344 True 1298.2 2538 91.142000 611 2864 2 chr2D.!!$R2 2253
4 TraesCS3B01G600500 chr7A 660572147 660574156 2009 False 2508.0 2508 89.565000 893 2864 1 chr7A.!!$F2 1971
5 TraesCS3B01G600500 chr7A 542714768 542716682 1914 False 2471.0 2471 90.197000 969 2864 1 chr7A.!!$F1 1895
6 TraesCS3B01G600500 chr7A 60708904 60710784 1880 True 1358.0 1358 80.021000 996 2864 1 chr7A.!!$R1 1868
7 TraesCS3B01G600500 chr1A 564157898 564159813 1915 True 2495.0 2495 90.410000 969 2864 1 chr1A.!!$R1 1895
8 TraesCS3B01G600500 chr3A 352470372 352472394 2022 False 2481.0 2481 89.261000 893 2864 1 chr3A.!!$F2 1971
9 TraesCS3B01G600500 chr3A 144697884 144699797 1913 False 2449.0 2449 89.990000 969 2864 1 chr3A.!!$F1 1895
10 TraesCS3B01G600500 chr6A 435088250 435090253 2003 True 2464.0 2464 89.219000 893 2864 1 chr6A.!!$R2 1971
11 TraesCS3B01G600500 chr6A 603905910 603907835 1925 False 2416.0 2416 89.639000 969 2864 1 chr6A.!!$F1 1895
12 TraesCS3B01G600500 chr6A 367764468 367765308 840 True 1083.0 1083 90.000000 1549 2389 1 chr6A.!!$R1 840
13 TraesCS3B01G600500 chr5D 34210090 34212558 2468 False 1250.1 2440 89.265000 611 2864 2 chr5D.!!$F2 2253
14 TraesCS3B01G600500 chr4B 595722576 595724457 1881 True 2412.0 2412 89.916000 983 2864 1 chr4B.!!$R2 1881
15 TraesCS3B01G600500 chr4B 167376853 167378053 1200 True 1356.0 1356 87.500000 969 2148 1 chr4B.!!$R1 1179
16 TraesCS3B01G600500 chr4B 16676675 16677549 874 False 593.0 593 79.143000 993 1870 1 chr4B.!!$F1 877
17 TraesCS3B01G600500 chr3D 376076042 376077929 1887 True 2385.0 2385 89.639000 983 2864 1 chr3D.!!$R1 1881
18 TraesCS3B01G600500 chr6B 18465698 18467610 1912 False 2342.0 2342 89.108000 981 2864 1 chr6B.!!$F1 1883
19 TraesCS3B01G600500 chr5A 115995306 115997175 1869 True 2313.0 2313 89.081000 983 2864 1 chr5A.!!$R1 1881
20 TraesCS3B01G600500 chr2B 796753095 796754972 1877 True 2198.0 2198 87.996000 983 2864 1 chr2B.!!$R2 1881
21 TraesCS3B01G600500 chr2B 33471653 33473351 1698 True 2170.0 2170 89.843000 1163 2864 1 chr2B.!!$R1 1701
22 TraesCS3B01G600500 chr2A 613239606 613241190 1584 True 1886.0 1886 88.308000 983 2567 1 chr2A.!!$R1 1584
23 TraesCS3B01G600500 chr1B 551239782 551242283 2501 True 995.0 1404 90.168333 590 2864 3 chr1B.!!$R2 2274
24 TraesCS3B01G600500 chr4A 147533857 147535731 1874 True 1258.5 1264 91.132500 969 2864 2 chr4A.!!$R1 1895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.032416 CCCTTTCTCCCCGAGTCCTA 60.032 60.0 0.0 0.0 0.0 2.94 F
311 312 0.106116 CCCGAGTCCTAACCCTAGCT 60.106 60.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 2015 0.394899 TCTCATCCTCGCTCTCAGCA 60.395 55.0 0.00 0.0 42.58 4.41 R
2204 3073 0.475044 TACCGGGGCAACAAGTTTCT 59.525 50.0 6.32 0.0 39.74 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.643735 TTTTTAGTCCCAACTTATAAGTTCCAA 57.356 29.630 24.77 12.01 45.65 3.53
41 42 8.857694 TTTAGTCCCAACTTATAAGTTCCAAG 57.142 34.615 24.77 14.94 45.65 3.61
42 43 6.449830 AGTCCCAACTTATAAGTTCCAAGT 57.550 37.500 24.77 13.87 45.65 3.16
43 44 6.473758 AGTCCCAACTTATAAGTTCCAAGTC 58.526 40.000 24.77 14.17 45.65 3.01
44 45 5.646793 GTCCCAACTTATAAGTTCCAAGTCC 59.353 44.000 24.77 8.42 45.65 3.85
45 46 4.948004 CCCAACTTATAAGTTCCAAGTCCC 59.052 45.833 24.77 0.00 45.65 4.46
46 47 5.281037 CCCAACTTATAAGTTCCAAGTCCCT 60.281 44.000 24.77 1.00 45.65 4.20
47 48 6.069847 CCCAACTTATAAGTTCCAAGTCCCTA 60.070 42.308 24.77 0.00 45.65 3.53
48 49 7.399634 CCAACTTATAAGTTCCAAGTCCCTAA 58.600 38.462 24.77 0.00 45.65 2.69
49 50 7.886446 CCAACTTATAAGTTCCAAGTCCCTAAA 59.114 37.037 24.77 0.00 45.65 1.85
50 51 9.292195 CAACTTATAAGTTCCAAGTCCCTAAAA 57.708 33.333 24.77 0.00 45.65 1.52
51 52 9.871175 AACTTATAAGTTCCAAGTCCCTAAAAA 57.129 29.630 22.49 0.00 45.65 1.94
52 53 9.516546 ACTTATAAGTTCCAAGTCCCTAAAAAG 57.483 33.333 12.50 0.00 35.21 2.27
53 54 9.516546 CTTATAAGTTCCAAGTCCCTAAAAAGT 57.483 33.333 4.18 0.00 0.00 2.66
54 55 7.997773 ATAAGTTCCAAGTCCCTAAAAAGTC 57.002 36.000 0.00 0.00 0.00 3.01
55 56 4.726583 AGTTCCAAGTCCCTAAAAAGTCC 58.273 43.478 0.00 0.00 0.00 3.85
56 57 3.801307 TCCAAGTCCCTAAAAAGTCCC 57.199 47.619 0.00 0.00 0.00 4.46
57 58 3.332968 TCCAAGTCCCTAAAAAGTCCCT 58.667 45.455 0.00 0.00 0.00 4.20
58 59 4.505367 TCCAAGTCCCTAAAAAGTCCCTA 58.495 43.478 0.00 0.00 0.00 3.53
59 60 4.287845 TCCAAGTCCCTAAAAAGTCCCTAC 59.712 45.833 0.00 0.00 0.00 3.18
60 61 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
61 62 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
62 63 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
63 64 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
64 65 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
65 66 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
66 67 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
67 68 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
77 78 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
78 79 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
79 80 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
80 81 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
81 82 3.245264 CCTGTTTGGTTCCTGGGACTTAT 60.245 47.826 4.84 0.00 0.00 1.73
82 83 4.018779 CCTGTTTGGTTCCTGGGACTTATA 60.019 45.833 4.84 0.00 0.00 0.98
83 84 5.515886 CCTGTTTGGTTCCTGGGACTTATAA 60.516 44.000 4.84 0.00 0.00 0.98
84 85 5.566469 TGTTTGGTTCCTGGGACTTATAAG 58.434 41.667 11.05 11.05 0.00 1.73
85 86 5.073965 TGTTTGGTTCCTGGGACTTATAAGT 59.926 40.000 18.05 18.05 43.16 2.24
118 119 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
127 128 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
128 129 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
129 130 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
130 131 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
131 132 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
132 133 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
133 134 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
134 135 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
135 136 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
136 137 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
137 138 4.140900 TCCCTATAAGTCCCTCCTTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
138 139 4.388118 CCCTATAAGTCCCTCCTTGAGAGT 60.388 50.000 0.00 0.00 41.47 3.24
139 140 4.830600 CCTATAAGTCCCTCCTTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
140 141 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
141 142 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
142 143 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
143 144 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
144 145 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
145 146 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
146 147 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
147 148 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
148 149 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
149 150 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
150 151 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
151 152 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
152 153 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
153 154 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
154 155 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
155 156 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
156 157 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
157 158 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
158 159 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
159 160 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
160 161 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
161 162 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
162 163 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
163 164 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
164 165 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
165 166 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
166 167 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
167 168 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
168 169 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
169 170 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
170 171 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
171 172 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
172 173 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
173 174 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
174 175 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
175 176 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
176 177 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
177 178 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
178 179 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
179 180 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
180 181 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
181 182 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
182 183 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
183 184 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
184 185 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
185 186 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
186 187 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
187 188 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
188 189 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
189 190 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
190 191 6.870815 TTAAGTCCCTATAAGTCCCTCCTA 57.129 41.667 0.00 0.00 0.00 2.94
191 192 5.970692 AAGTCCCTATAAGTCCCTCCTAT 57.029 43.478 0.00 0.00 0.00 2.57
192 193 5.970692 AGTCCCTATAAGTCCCTCCTATT 57.029 43.478 0.00 0.00 0.00 1.73
193 194 6.310459 AGTCCCTATAAGTCCCTCCTATTT 57.690 41.667 0.00 0.00 0.00 1.40
194 195 6.085416 AGTCCCTATAAGTCCCTCCTATTTG 58.915 44.000 0.00 0.00 0.00 2.32
195 196 5.248705 GTCCCTATAAGTCCCTCCTATTTGG 59.751 48.000 0.00 0.00 37.10 3.28
196 197 5.102346 TCCCTATAAGTCCCTCCTATTTGGT 60.102 44.000 0.00 0.00 37.07 3.67
197 198 5.611408 CCCTATAAGTCCCTCCTATTTGGTT 59.389 44.000 0.00 0.00 37.07 3.67
198 199 6.102762 CCCTATAAGTCCCTCCTATTTGGTTT 59.897 42.308 0.00 0.00 37.07 3.27
199 200 7.294008 CCCTATAAGTCCCTCCTATTTGGTTTA 59.706 40.741 0.00 0.00 37.07 2.01
200 201 8.376270 CCTATAAGTCCCTCCTATTTGGTTTAG 58.624 40.741 0.00 0.00 37.07 1.85
201 202 9.155785 CTATAAGTCCCTCCTATTTGGTTTAGA 57.844 37.037 0.00 0.00 37.07 2.10
202 203 6.910259 AAGTCCCTCCTATTTGGTTTAGAT 57.090 37.500 0.00 0.00 37.07 1.98
203 204 6.253946 AGTCCCTCCTATTTGGTTTAGATG 57.746 41.667 0.00 0.00 37.07 2.90
204 205 5.132816 AGTCCCTCCTATTTGGTTTAGATGG 59.867 44.000 0.00 0.00 37.07 3.51
205 206 4.415512 TCCCTCCTATTTGGTTTAGATGGG 59.584 45.833 0.00 0.00 37.07 4.00
206 207 4.415512 CCCTCCTATTTGGTTTAGATGGGA 59.584 45.833 0.00 0.00 34.10 4.37
207 208 5.377478 CCTCCTATTTGGTTTAGATGGGAC 58.623 45.833 0.00 0.00 37.07 4.46
208 209 5.132816 CCTCCTATTTGGTTTAGATGGGACT 59.867 44.000 0.00 0.00 37.07 3.85
209 210 6.353951 CCTCCTATTTGGTTTAGATGGGACTT 60.354 42.308 0.00 0.00 37.07 3.01
210 211 7.147373 CCTCCTATTTGGTTTAGATGGGACTTA 60.147 40.741 0.00 0.00 37.07 2.24
211 212 8.344939 TCCTATTTGGTTTAGATGGGACTTAT 57.655 34.615 0.00 0.00 37.07 1.73
212 213 9.455144 TCCTATTTGGTTTAGATGGGACTTATA 57.545 33.333 0.00 0.00 37.07 0.98
213 214 9.726438 CCTATTTGGTTTAGATGGGACTTATAG 57.274 37.037 0.00 0.00 0.00 1.31
214 215 9.726438 CTATTTGGTTTAGATGGGACTTATAGG 57.274 37.037 0.00 0.00 0.00 2.57
215 216 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
216 217 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
217 218 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
218 219 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
219 220 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
220 221 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
221 222 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
222 223 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
223 224 6.663734 AGATGGGACTTATAGGGACTTTTTG 58.336 40.000 0.00 0.00 41.75 2.44
224 225 6.447084 AGATGGGACTTATAGGGACTTTTTGA 59.553 38.462 0.00 0.00 41.75 2.69
225 226 6.457159 TGGGACTTATAGGGACTTTTTGAA 57.543 37.500 0.00 0.00 41.75 2.69
226 227 6.481643 TGGGACTTATAGGGACTTTTTGAAG 58.518 40.000 0.00 0.00 41.75 3.02
227 228 6.045106 TGGGACTTATAGGGACTTTTTGAAGT 59.955 38.462 0.00 0.00 41.75 3.01
228 229 6.598457 GGGACTTATAGGGACTTTTTGAAGTC 59.402 42.308 10.09 10.09 46.36 3.01
238 239 6.459670 GACTTTTTGAAGTCCCTAAACCAA 57.540 37.500 7.84 0.00 42.47 3.67
239 240 7.050970 GACTTTTTGAAGTCCCTAAACCAAT 57.949 36.000 7.84 0.00 42.47 3.16
240 241 8.173542 GACTTTTTGAAGTCCCTAAACCAATA 57.826 34.615 7.84 0.00 42.47 1.90
241 242 8.541899 ACTTTTTGAAGTCCCTAAACCAATAA 57.458 30.769 0.00 0.00 0.00 1.40
242 243 8.638873 ACTTTTTGAAGTCCCTAAACCAATAAG 58.361 33.333 0.00 0.00 32.68 1.73
243 244 8.541899 TTTTTGAAGTCCCTAAACCAATAAGT 57.458 30.769 0.00 0.00 0.00 2.24
244 245 7.754851 TTTGAAGTCCCTAAACCAATAAGTC 57.245 36.000 0.00 0.00 0.00 3.01
245 246 5.812286 TGAAGTCCCTAAACCAATAAGTCC 58.188 41.667 0.00 0.00 0.00 3.85
246 247 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
247 248 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
248 249 4.473922 AGTCCCTAAACCAATAAGTCCCTC 59.526 45.833 0.00 0.00 0.00 4.30
249 250 4.226620 GTCCCTAAACCAATAAGTCCCTCA 59.773 45.833 0.00 0.00 0.00 3.86
250 251 4.853276 TCCCTAAACCAATAAGTCCCTCAA 59.147 41.667 0.00 0.00 0.00 3.02
251 252 5.313772 TCCCTAAACCAATAAGTCCCTCAAA 59.686 40.000 0.00 0.00 0.00 2.69
252 253 6.014012 CCCTAAACCAATAAGTCCCTCAAAA 58.986 40.000 0.00 0.00 0.00 2.44
253 254 6.071560 CCCTAAACCAATAAGTCCCTCAAAAC 60.072 42.308 0.00 0.00 0.00 2.43
254 255 6.492087 CCTAAACCAATAAGTCCCTCAAAACA 59.508 38.462 0.00 0.00 0.00 2.83
255 256 6.800072 AAACCAATAAGTCCCTCAAAACAA 57.200 33.333 0.00 0.00 0.00 2.83
256 257 6.800072 AACCAATAAGTCCCTCAAAACAAA 57.200 33.333 0.00 0.00 0.00 2.83
257 258 6.156748 ACCAATAAGTCCCTCAAAACAAAC 57.843 37.500 0.00 0.00 0.00 2.93
258 259 5.659079 ACCAATAAGTCCCTCAAAACAAACA 59.341 36.000 0.00 0.00 0.00 2.83
259 260 5.983118 CCAATAAGTCCCTCAAAACAAACAC 59.017 40.000 0.00 0.00 0.00 3.32
260 261 5.784578 ATAAGTCCCTCAAAACAAACACC 57.215 39.130 0.00 0.00 0.00 4.16
261 262 2.384828 AGTCCCTCAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
262 263 2.024369 AGTCCCTCAAAACAAACACCCT 60.024 45.455 0.00 0.00 0.00 4.34
263 264 2.361119 GTCCCTCAAAACAAACACCCTC 59.639 50.000 0.00 0.00 0.00 4.30
264 265 2.243736 TCCCTCAAAACAAACACCCTCT 59.756 45.455 0.00 0.00 0.00 3.69
265 266 2.362077 CCCTCAAAACAAACACCCTCTG 59.638 50.000 0.00 0.00 0.00 3.35
266 267 3.287222 CCTCAAAACAAACACCCTCTGA 58.713 45.455 0.00 0.00 0.00 3.27
267 268 3.316308 CCTCAAAACAAACACCCTCTGAG 59.684 47.826 0.00 0.00 0.00 3.35
268 269 3.947834 CTCAAAACAAACACCCTCTGAGT 59.052 43.478 3.66 0.00 0.00 3.41
269 270 3.945285 TCAAAACAAACACCCTCTGAGTC 59.055 43.478 3.66 0.00 0.00 3.36
270 271 3.933861 AAACAAACACCCTCTGAGTCT 57.066 42.857 3.66 0.00 0.00 3.24
271 272 3.477210 AACAAACACCCTCTGAGTCTC 57.523 47.619 3.66 0.00 0.00 3.36
272 273 1.694696 ACAAACACCCTCTGAGTCTCC 59.305 52.381 3.66 0.00 0.00 3.71
273 274 1.002544 CAAACACCCTCTGAGTCTCCC 59.997 57.143 3.66 0.00 0.00 4.30
274 275 0.489567 AACACCCTCTGAGTCTCCCT 59.510 55.000 3.66 0.00 0.00 4.20
275 276 0.040499 ACACCCTCTGAGTCTCCCTC 59.960 60.000 3.66 0.00 40.89 4.30
276 277 0.334676 CACCCTCTGAGTCTCCCTCT 59.665 60.000 3.66 0.00 41.11 3.69
277 278 0.629058 ACCCTCTGAGTCTCCCTCTC 59.371 60.000 3.66 0.00 41.11 3.20
278 279 0.628522 CCCTCTGAGTCTCCCTCTCA 59.371 60.000 3.66 0.00 41.11 3.27
279 280 1.006519 CCCTCTGAGTCTCCCTCTCAA 59.993 57.143 3.66 0.00 40.68 3.02
280 281 2.359143 CCCTCTGAGTCTCCCTCTCAAT 60.359 54.545 3.66 0.00 40.68 2.57
281 282 3.373830 CCTCTGAGTCTCCCTCTCAATT 58.626 50.000 3.66 0.00 40.68 2.32
282 283 3.384467 CCTCTGAGTCTCCCTCTCAATTC 59.616 52.174 3.66 0.00 40.68 2.17
283 284 3.370104 TCTGAGTCTCCCTCTCAATTCC 58.630 50.000 0.00 0.00 40.68 3.01
284 285 2.433970 CTGAGTCTCCCTCTCAATTCCC 59.566 54.545 0.00 0.00 40.68 3.97
285 286 1.765904 GAGTCTCCCTCTCAATTCCCC 59.234 57.143 0.00 0.00 37.22 4.81
286 287 1.367848 AGTCTCCCTCTCAATTCCCCT 59.632 52.381 0.00 0.00 0.00 4.79
287 288 2.200955 GTCTCCCTCTCAATTCCCCTT 58.799 52.381 0.00 0.00 0.00 3.95
288 289 2.578480 GTCTCCCTCTCAATTCCCCTTT 59.422 50.000 0.00 0.00 0.00 3.11
289 290 2.846827 TCTCCCTCTCAATTCCCCTTTC 59.153 50.000 0.00 0.00 0.00 2.62
290 291 2.849318 CTCCCTCTCAATTCCCCTTTCT 59.151 50.000 0.00 0.00 0.00 2.52
291 292 2.846827 TCCCTCTCAATTCCCCTTTCTC 59.153 50.000 0.00 0.00 0.00 2.87
292 293 2.092158 CCCTCTCAATTCCCCTTTCTCC 60.092 54.545 0.00 0.00 0.00 3.71
293 294 2.092158 CCTCTCAATTCCCCTTTCTCCC 60.092 54.545 0.00 0.00 0.00 4.30
294 295 1.923148 TCTCAATTCCCCTTTCTCCCC 59.077 52.381 0.00 0.00 0.00 4.81
295 296 0.623723 TCAATTCCCCTTTCTCCCCG 59.376 55.000 0.00 0.00 0.00 5.73
296 297 0.623723 CAATTCCCCTTTCTCCCCGA 59.376 55.000 0.00 0.00 0.00 5.14
297 298 0.919710 AATTCCCCTTTCTCCCCGAG 59.080 55.000 0.00 0.00 0.00 4.63
298 299 0.253207 ATTCCCCTTTCTCCCCGAGT 60.253 55.000 0.00 0.00 0.00 4.18
299 300 0.908180 TTCCCCTTTCTCCCCGAGTC 60.908 60.000 0.00 0.00 0.00 3.36
300 301 2.368011 CCCCTTTCTCCCCGAGTCC 61.368 68.421 0.00 0.00 0.00 3.85
301 302 1.306226 CCCTTTCTCCCCGAGTCCT 60.306 63.158 0.00 0.00 0.00 3.85
302 303 0.032416 CCCTTTCTCCCCGAGTCCTA 60.032 60.000 0.00 0.00 0.00 2.94
303 304 1.621622 CCCTTTCTCCCCGAGTCCTAA 60.622 57.143 0.00 0.00 0.00 2.69
304 305 1.481363 CCTTTCTCCCCGAGTCCTAAC 59.519 57.143 0.00 0.00 0.00 2.34
305 306 1.481363 CTTTCTCCCCGAGTCCTAACC 59.519 57.143 0.00 0.00 0.00 2.85
306 307 0.325016 TTCTCCCCGAGTCCTAACCC 60.325 60.000 0.00 0.00 0.00 4.11
307 308 1.219824 TCTCCCCGAGTCCTAACCCT 61.220 60.000 0.00 0.00 0.00 4.34
308 309 0.554792 CTCCCCGAGTCCTAACCCTA 59.445 60.000 0.00 0.00 0.00 3.53
309 310 0.554792 TCCCCGAGTCCTAACCCTAG 59.445 60.000 0.00 0.00 0.00 3.02
310 311 1.114119 CCCCGAGTCCTAACCCTAGC 61.114 65.000 0.00 0.00 0.00 3.42
311 312 0.106116 CCCGAGTCCTAACCCTAGCT 60.106 60.000 0.00 0.00 0.00 3.32
312 313 1.033574 CCGAGTCCTAACCCTAGCTG 58.966 60.000 0.00 0.00 0.00 4.24
313 314 0.386113 CGAGTCCTAACCCTAGCTGC 59.614 60.000 0.00 0.00 0.00 5.25
314 315 0.386113 GAGTCCTAACCCTAGCTGCG 59.614 60.000 0.00 0.00 0.00 5.18
315 316 1.227292 GTCCTAACCCTAGCTGCGC 60.227 63.158 0.00 0.00 0.00 6.09
316 317 2.279517 CCTAACCCTAGCTGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
317 318 2.279517 CTAACCCTAGCTGCGCGG 60.280 66.667 13.18 13.18 0.00 6.46
318 319 4.524318 TAACCCTAGCTGCGCGGC 62.524 66.667 33.71 33.71 0.00 6.53
356 357 4.752594 GGGGGTGCCAGGTAGGGA 62.753 72.222 0.00 0.00 38.09 4.20
357 358 3.090532 GGGGTGCCAGGTAGGGAG 61.091 72.222 0.00 0.00 39.03 4.30
358 359 2.040606 GGGTGCCAGGTAGGGAGA 59.959 66.667 0.00 0.00 39.03 3.71
359 360 2.066999 GGGTGCCAGGTAGGGAGAG 61.067 68.421 0.00 0.00 39.03 3.20
360 361 2.736826 GGTGCCAGGTAGGGAGAGC 61.737 68.421 0.00 0.00 39.03 4.09
361 362 2.759973 TGCCAGGTAGGGAGAGCG 60.760 66.667 0.00 0.00 38.09 5.03
362 363 4.228567 GCCAGGTAGGGAGAGCGC 62.229 72.222 0.00 0.00 38.09 5.92
363 364 3.541713 CCAGGTAGGGAGAGCGCC 61.542 72.222 2.29 0.00 0.00 6.53
364 365 2.759973 CAGGTAGGGAGAGCGCCA 60.760 66.667 2.29 0.00 0.00 5.69
365 366 2.136878 CAGGTAGGGAGAGCGCCAT 61.137 63.158 2.29 0.00 0.00 4.40
366 367 2.136878 AGGTAGGGAGAGCGCCATG 61.137 63.158 2.29 0.00 0.00 3.66
367 368 2.423446 GTAGGGAGAGCGCCATGG 59.577 66.667 7.63 7.63 0.00 3.66
368 369 2.134287 GTAGGGAGAGCGCCATGGA 61.134 63.158 18.40 0.00 0.00 3.41
369 370 1.152247 TAGGGAGAGCGCCATGGAT 60.152 57.895 18.40 0.00 0.00 3.41
370 371 1.475169 TAGGGAGAGCGCCATGGATG 61.475 60.000 18.40 8.13 0.00 3.51
371 372 2.811514 GGGAGAGCGCCATGGATGA 61.812 63.158 18.40 0.00 0.00 2.92
372 373 1.301558 GGAGAGCGCCATGGATGAG 60.302 63.158 18.40 4.15 0.00 2.90
373 374 1.301558 GAGAGCGCCATGGATGAGG 60.302 63.158 18.40 0.00 0.00 3.86
374 375 2.281345 GAGCGCCATGGATGAGGG 60.281 66.667 18.40 0.00 0.00 4.30
379 380 4.240103 CCATGGATGAGGGCGCGA 62.240 66.667 12.10 0.00 0.00 5.87
380 381 2.969238 CATGGATGAGGGCGCGAC 60.969 66.667 12.10 6.99 0.00 5.19
381 382 4.241555 ATGGATGAGGGCGCGACC 62.242 66.667 27.87 27.87 37.93 4.79
404 405 4.467084 GGATGGCGCGGTGGAAGA 62.467 66.667 8.83 0.00 0.00 2.87
405 406 2.892425 GATGGCGCGGTGGAAGAG 60.892 66.667 8.83 0.00 0.00 2.85
406 407 3.371097 GATGGCGCGGTGGAAGAGA 62.371 63.158 8.83 0.00 0.00 3.10
407 408 3.376935 ATGGCGCGGTGGAAGAGAG 62.377 63.158 8.83 0.00 0.00 3.20
410 411 4.069232 CGCGGTGGAAGAGAGCCA 62.069 66.667 0.00 0.00 0.00 4.75
414 415 2.435059 GTGGAAGAGAGCCACGGC 60.435 66.667 0.00 0.00 45.50 5.68
432 433 4.437587 GCTGCACCAGGAGGCCAT 62.438 66.667 5.01 0.00 39.06 4.40
433 434 2.439701 CTGCACCAGGAGGCCATG 60.440 66.667 5.01 0.00 39.06 3.66
434 435 4.051167 TGCACCAGGAGGCCATGG 62.051 66.667 17.54 17.54 42.60 3.66
438 439 4.133373 CCAGGAGGCCATGGTGGG 62.133 72.222 14.67 2.49 38.19 4.61
439 440 4.133373 CAGGAGGCCATGGTGGGG 62.133 72.222 14.67 0.00 38.19 4.96
440 441 4.369591 AGGAGGCCATGGTGGGGA 62.370 66.667 14.67 0.00 38.19 4.81
441 442 3.813724 GGAGGCCATGGTGGGGAG 61.814 72.222 14.67 0.00 38.19 4.30
442 443 3.813724 GAGGCCATGGTGGGGAGG 61.814 72.222 14.67 0.00 38.19 4.30
460 461 2.902846 CGGCGGGTGGTCAAACAA 60.903 61.111 0.00 0.00 0.00 2.83
461 462 2.265182 CGGCGGGTGGTCAAACAAT 61.265 57.895 0.00 0.00 0.00 2.71
462 463 1.288752 GGCGGGTGGTCAAACAATG 59.711 57.895 0.00 0.00 0.00 2.82
463 464 1.288752 GCGGGTGGTCAAACAATGG 59.711 57.895 0.00 0.00 0.00 3.16
464 465 1.175983 GCGGGTGGTCAAACAATGGA 61.176 55.000 0.00 0.00 0.00 3.41
465 466 0.881118 CGGGTGGTCAAACAATGGAG 59.119 55.000 0.00 0.00 0.00 3.86
466 467 1.256812 GGGTGGTCAAACAATGGAGG 58.743 55.000 0.00 0.00 0.00 4.30
467 468 1.256812 GGTGGTCAAACAATGGAGGG 58.743 55.000 0.00 0.00 0.00 4.30
468 469 1.203001 GGTGGTCAAACAATGGAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
469 470 2.162681 GTGGTCAAACAATGGAGGGAG 58.837 52.381 0.00 0.00 0.00 4.30
470 471 1.075374 TGGTCAAACAATGGAGGGAGG 59.925 52.381 0.00 0.00 0.00 4.30
471 472 1.354368 GGTCAAACAATGGAGGGAGGA 59.646 52.381 0.00 0.00 0.00 3.71
472 473 2.619074 GGTCAAACAATGGAGGGAGGAG 60.619 54.545 0.00 0.00 0.00 3.69
473 474 1.635487 TCAAACAATGGAGGGAGGAGG 59.365 52.381 0.00 0.00 0.00 4.30
474 475 1.635487 CAAACAATGGAGGGAGGAGGA 59.365 52.381 0.00 0.00 0.00 3.71
475 476 1.589414 AACAATGGAGGGAGGAGGAG 58.411 55.000 0.00 0.00 0.00 3.69
476 477 0.327000 ACAATGGAGGGAGGAGGAGG 60.327 60.000 0.00 0.00 0.00 4.30
477 478 1.385206 AATGGAGGGAGGAGGAGGC 60.385 63.158 0.00 0.00 0.00 4.70
478 479 1.907470 AATGGAGGGAGGAGGAGGCT 61.907 60.000 0.00 0.00 0.00 4.58
479 480 2.445654 GGAGGGAGGAGGAGGCTG 60.446 72.222 0.00 0.00 0.00 4.85
480 481 2.366570 GAGGGAGGAGGAGGCTGT 59.633 66.667 0.00 0.00 0.00 4.40
481 482 2.040278 AGGGAGGAGGAGGCTGTG 59.960 66.667 0.00 0.00 0.00 3.66
482 483 3.791586 GGGAGGAGGAGGCTGTGC 61.792 72.222 0.00 0.00 0.00 4.57
483 484 4.154347 GGAGGAGGAGGCTGTGCG 62.154 72.222 0.00 0.00 0.00 5.34
484 485 3.386237 GAGGAGGAGGCTGTGCGT 61.386 66.667 0.00 0.00 0.00 5.24
485 486 2.925170 AGGAGGAGGCTGTGCGTT 60.925 61.111 0.00 0.00 0.00 4.84
486 487 2.743928 GGAGGAGGCTGTGCGTTG 60.744 66.667 0.00 0.00 0.00 4.10
487 488 2.031163 GAGGAGGCTGTGCGTTGT 59.969 61.111 0.00 0.00 0.00 3.32
488 489 2.281070 AGGAGGCTGTGCGTTGTG 60.281 61.111 0.00 0.00 0.00 3.33
489 490 4.030452 GGAGGCTGTGCGTTGTGC 62.030 66.667 0.00 0.00 46.70 4.57
498 499 2.658268 GCGTTGTGCAGGGCAAAC 60.658 61.111 0.00 0.10 41.47 2.93
499 500 2.027460 CGTTGTGCAGGGCAAACC 59.973 61.111 0.00 0.00 41.47 3.27
531 532 2.908940 GCCATGGCCATTCGGAGG 60.909 66.667 27.24 18.41 34.56 4.30
532 533 2.597340 CCATGGCCATTCGGAGGT 59.403 61.111 17.92 0.00 0.00 3.85
533 534 1.526917 CCATGGCCATTCGGAGGTC 60.527 63.158 17.92 0.00 0.00 3.85
534 535 1.526917 CATGGCCATTCGGAGGTCC 60.527 63.158 17.92 0.00 0.00 4.46
535 536 2.757124 ATGGCCATTCGGAGGTCCC 61.757 63.158 14.09 0.00 0.00 4.46
536 537 3.407967 GGCCATTCGGAGGTCCCA 61.408 66.667 0.00 0.00 34.14 4.37
537 538 2.674754 GCCATTCGGAGGTCCCAA 59.325 61.111 0.00 0.00 34.14 4.12
538 539 1.749258 GCCATTCGGAGGTCCCAAC 60.749 63.158 0.00 0.00 34.14 3.77
539 540 1.077716 CCATTCGGAGGTCCCAACC 60.078 63.158 0.00 0.00 46.87 3.77
547 548 2.983592 GGTCCCAACCTTGCGTGG 60.984 66.667 0.00 0.00 42.80 4.94
548 549 2.203294 GTCCCAACCTTGCGTGGT 60.203 61.111 0.00 0.00 43.11 4.16
549 550 2.112297 TCCCAACCTTGCGTGGTC 59.888 61.111 0.77 0.00 39.83 4.02
550 551 2.203280 CCCAACCTTGCGTGGTCA 60.203 61.111 0.77 0.00 39.83 4.02
551 552 1.826054 CCCAACCTTGCGTGGTCAA 60.826 57.895 0.77 0.00 39.83 3.18
552 553 1.654220 CCAACCTTGCGTGGTCAAG 59.346 57.895 0.77 0.00 39.83 3.02
556 557 2.664851 CTTGCGTGGTCAAGGCGA 60.665 61.111 0.00 0.00 42.76 5.54
557 558 2.664851 TTGCGTGGTCAAGGCGAG 60.665 61.111 0.00 0.00 42.76 5.03
558 559 4.680237 TGCGTGGTCAAGGCGAGG 62.680 66.667 0.00 0.00 42.76 4.63
576 577 2.747855 CGCAGAAGGGTGGCCTTC 60.748 66.667 3.32 0.00 44.51 3.46
577 578 2.361737 GCAGAAGGGTGGCCTTCC 60.362 66.667 3.32 6.65 45.07 3.46
578 579 3.170362 CAGAAGGGTGGCCTTCCA 58.830 61.111 16.91 0.00 45.07 3.53
579 580 1.693640 CAGAAGGGTGGCCTTCCAT 59.306 57.895 16.91 8.99 45.62 3.41
580 581 0.394899 CAGAAGGGTGGCCTTCCATC 60.395 60.000 16.91 13.79 45.62 3.51
581 582 0.846427 AGAAGGGTGGCCTTCCATCA 60.846 55.000 17.80 0.00 45.54 3.07
582 583 0.681243 GAAGGGTGGCCTTCCATCAC 60.681 60.000 16.91 0.00 45.54 3.06
583 584 2.043953 GGGTGGCCTTCCATCACC 60.044 66.667 16.91 8.50 45.54 4.02
584 585 2.438434 GGTGGCCTTCCATCACCG 60.438 66.667 3.32 0.00 45.62 4.94
585 586 2.668632 GTGGCCTTCCATCACCGA 59.331 61.111 3.32 0.00 45.62 4.69
586 587 1.002624 GTGGCCTTCCATCACCGAA 60.003 57.895 3.32 0.00 45.62 4.30
587 588 1.026718 GTGGCCTTCCATCACCGAAG 61.027 60.000 3.32 0.00 45.62 3.79
588 589 1.198094 TGGCCTTCCATCACCGAAGA 61.198 55.000 3.32 0.00 39.29 2.87
594 595 1.815421 CCATCACCGAAGAAGGGCG 60.815 63.158 0.00 0.00 35.02 6.13
657 658 1.913762 CAAGACGTGGAGGAGGGGT 60.914 63.158 0.00 0.00 0.00 4.95
705 835 0.393132 GGCTTGGCTAGAAGGGTGAC 60.393 60.000 0.00 0.00 0.00 3.67
715 845 3.268034 AGAAGGGTGACTCCTCTCTTT 57.732 47.619 0.00 0.00 35.80 2.52
716 846 4.405756 AGAAGGGTGACTCCTCTCTTTA 57.594 45.455 0.00 0.00 35.80 1.85
717 847 4.349365 AGAAGGGTGACTCCTCTCTTTAG 58.651 47.826 0.00 0.00 35.80 1.85
718 848 4.044825 AGAAGGGTGACTCCTCTCTTTAGA 59.955 45.833 0.00 0.00 35.80 2.10
719 849 4.618378 AGGGTGACTCCTCTCTTTAGAT 57.382 45.455 0.00 0.00 36.25 1.98
720 850 4.954089 AGGGTGACTCCTCTCTTTAGATT 58.046 43.478 0.00 0.00 36.25 2.40
721 851 5.346270 AGGGTGACTCCTCTCTTTAGATTT 58.654 41.667 0.00 0.00 36.25 2.17
722 852 5.188751 AGGGTGACTCCTCTCTTTAGATTTG 59.811 44.000 0.00 0.00 36.25 2.32
723 853 5.187967 GGGTGACTCCTCTCTTTAGATTTGA 59.812 44.000 0.00 0.00 36.25 2.69
725 855 7.334858 GGTGACTCCTCTCTTTAGATTTGAAT 58.665 38.462 0.00 0.00 0.00 2.57
774 907 9.843334 AAAATTTTATTTGCTGCACCATATTTG 57.157 25.926 0.00 0.00 0.00 2.32
817 988 2.025981 AGAGACCATATTTGCTGCACCA 60.026 45.455 0.00 0.00 0.00 4.17
818 989 2.954318 GAGACCATATTTGCTGCACCAT 59.046 45.455 0.00 0.00 0.00 3.55
822 993 3.382546 ACCATATTTGCTGCACCATTCTC 59.617 43.478 0.00 0.00 0.00 2.87
823 994 3.635373 CCATATTTGCTGCACCATTCTCT 59.365 43.478 0.00 0.00 0.00 3.10
824 995 4.499188 CCATATTTGCTGCACCATTCTCTG 60.499 45.833 0.00 0.00 0.00 3.35
825 996 2.275134 TTTGCTGCACCATTCTCTGA 57.725 45.000 0.00 0.00 0.00 3.27
826 997 2.275134 TTGCTGCACCATTCTCTGAA 57.725 45.000 0.00 0.00 0.00 3.02
827 998 2.275134 TGCTGCACCATTCTCTGAAA 57.725 45.000 0.00 0.00 0.00 2.69
828 999 2.799017 TGCTGCACCATTCTCTGAAAT 58.201 42.857 0.00 0.00 0.00 2.17
829 1000 3.159472 TGCTGCACCATTCTCTGAAATT 58.841 40.909 0.00 0.00 0.00 1.82
830 1001 3.575256 TGCTGCACCATTCTCTGAAATTT 59.425 39.130 0.00 0.00 0.00 1.82
831 1002 4.039488 TGCTGCACCATTCTCTGAAATTTT 59.961 37.500 0.00 0.00 0.00 1.82
832 1003 5.243507 TGCTGCACCATTCTCTGAAATTTTA 59.756 36.000 0.00 0.00 0.00 1.52
833 1004 6.071221 TGCTGCACCATTCTCTGAAATTTTAT 60.071 34.615 0.00 0.00 0.00 1.40
834 1005 6.815142 GCTGCACCATTCTCTGAAATTTTATT 59.185 34.615 0.00 0.00 0.00 1.40
835 1006 7.332678 GCTGCACCATTCTCTGAAATTTTATTT 59.667 33.333 0.00 0.00 0.00 1.40
836 1007 8.537049 TGCACCATTCTCTGAAATTTTATTTG 57.463 30.769 0.00 0.00 0.00 2.32
837 1008 7.118101 TGCACCATTCTCTGAAATTTTATTTGC 59.882 33.333 0.00 0.00 0.00 3.68
838 1009 7.332678 GCACCATTCTCTGAAATTTTATTTGCT 59.667 33.333 0.00 0.00 0.00 3.91
839 1010 8.653338 CACCATTCTCTGAAATTTTATTTGCTG 58.347 33.333 0.00 0.00 0.00 4.41
840 1011 7.332678 ACCATTCTCTGAAATTTTATTTGCTGC 59.667 33.333 0.00 0.00 0.00 5.25
841 1012 7.332430 CCATTCTCTGAAATTTTATTTGCTGCA 59.668 33.333 0.00 0.00 0.00 4.41
845 1016 8.742777 TCTCTGAAATTTTATTTGCTGCACTAT 58.257 29.630 0.00 1.46 0.00 2.12
853 1024 6.713762 TTATTTGCTGCACTATATTTGGCT 57.286 33.333 0.00 0.00 0.00 4.75
855 1026 5.756195 TTTGCTGCACTATATTTGGCTAG 57.244 39.130 0.00 0.00 0.00 3.42
857 1028 4.635223 TGCTGCACTATATTTGGCTAGAG 58.365 43.478 0.00 0.00 0.00 2.43
859 1030 4.262635 GCTGCACTATATTTGGCTAGAGGA 60.263 45.833 0.00 0.00 0.00 3.71
874 1045 6.895756 TGGCTAGAGGAAACAGATTACTTAGA 59.104 38.462 0.00 0.00 29.95 2.10
875 1046 7.068839 TGGCTAGAGGAAACAGATTACTTAGAG 59.931 40.741 0.00 0.00 29.95 2.43
876 1047 7.285858 GGCTAGAGGAAACAGATTACTTAGAGA 59.714 40.741 0.00 0.00 29.95 3.10
877 1048 8.132995 GCTAGAGGAAACAGATTACTTAGAGAC 58.867 40.741 0.00 0.00 29.95 3.36
878 1049 7.412853 AGAGGAAACAGATTACTTAGAGACC 57.587 40.000 0.00 0.00 29.95 3.85
879 1050 6.954684 AGAGGAAACAGATTACTTAGAGACCA 59.045 38.462 0.00 0.00 29.95 4.02
880 1051 7.123547 AGAGGAAACAGATTACTTAGAGACCAG 59.876 40.741 0.00 0.00 29.95 4.00
891 1076 1.818642 AGAGACCAGATTTGCTGCAC 58.181 50.000 0.00 0.00 43.50 4.57
938 1241 2.358957 GGTTATGTCTGCACATGCTGA 58.641 47.619 9.14 9.14 43.54 4.26
939 1242 2.353889 GGTTATGTCTGCACATGCTGAG 59.646 50.000 13.06 0.00 46.96 3.35
940 1243 3.264947 GTTATGTCTGCACATGCTGAGA 58.735 45.455 13.06 12.49 46.96 3.27
941 1244 2.484742 ATGTCTGCACATGCTGAGAA 57.515 45.000 13.06 6.19 46.96 2.87
943 1246 2.148768 TGTCTGCACATGCTGAGAAAG 58.851 47.619 13.06 0.00 46.96 2.62
945 1248 2.159234 GTCTGCACATGCTGAGAAAGAC 59.841 50.000 13.06 8.49 46.96 3.01
946 1249 1.467734 CTGCACATGCTGAGAAAGACC 59.532 52.381 5.31 0.00 41.71 3.85
947 1250 1.072806 TGCACATGCTGAGAAAGACCT 59.927 47.619 5.31 0.00 42.66 3.85
951 1254 2.503356 ACATGCTGAGAAAGACCTAGGG 59.497 50.000 14.81 0.00 0.00 3.53
952 1255 2.623418 TGCTGAGAAAGACCTAGGGA 57.377 50.000 14.81 0.00 0.00 4.20
1153 1578 4.933330 TGAATCAATCGTAGAGCAGTACC 58.067 43.478 0.00 0.00 43.63 3.34
1154 1579 3.627732 ATCAATCGTAGAGCAGTACCG 57.372 47.619 0.00 0.00 43.63 4.02
1387 1818 8.837389 ACAACATAGAACAAGATGATGATGATG 58.163 33.333 0.00 0.00 32.06 3.07
1388 1819 9.052759 CAACATAGAACAAGATGATGATGATGA 57.947 33.333 0.00 0.00 29.81 2.92
1416 1865 5.593909 TGATGATTATCTTCGCAACCCAATT 59.406 36.000 0.00 0.00 34.31 2.32
1425 1874 1.200020 CGCAACCCAATTCCTGAGAAC 59.800 52.381 0.00 0.00 33.97 3.01
1513 1983 6.163476 GTTCCTTGTTCCAACAAAGAAAAGT 58.837 36.000 14.84 0.00 45.57 2.66
1545 2015 1.137872 GTTCCTGGTCATGAGAGCGAT 59.862 52.381 0.00 0.00 45.10 4.58
1576 2124 2.957680 GAGGATGAGAGCATGTCAGAGA 59.042 50.000 0.00 0.00 43.71 3.10
1582 2130 5.156608 TGAGAGCATGTCAGAGATTGAAA 57.843 39.130 0.00 0.00 37.61 2.69
1686 2235 8.567285 AAGGAAGAAAATATCCTAATATGGCG 57.433 34.615 0.00 0.00 45.33 5.69
1700 2249 2.579410 ATGGCGGAGTTTAAGTTGGT 57.421 45.000 0.00 0.00 0.00 3.67
1804 2353 6.409704 TCAAGAAGGGATGAAGATAAGTGTG 58.590 40.000 0.00 0.00 0.00 3.82
1827 2376 4.663166 CGTGGAGGATATATGCTTCTACG 58.337 47.826 18.97 18.97 30.45 3.51
1966 2834 5.876651 TGTGGTCATGATTGCTCTAGTAT 57.123 39.130 0.00 0.00 0.00 2.12
1967 2835 5.604565 TGTGGTCATGATTGCTCTAGTATG 58.395 41.667 0.00 0.00 0.00 2.39
2003 2871 5.181690 AGTTAAAGAATGCAAACAAGCGA 57.818 34.783 0.00 0.00 37.31 4.93
2114 2983 6.152831 TGGAATCGACATCAACTCTAAGAGAA 59.847 38.462 0.00 0.00 33.32 2.87
2186 3055 7.933577 TGGGATACAAGCTTTGATAATCTGTAG 59.066 37.037 0.00 0.00 39.74 2.74
2204 3073 6.530120 TCTGTAGAGTTTCAAGGCACAAATA 58.470 36.000 0.00 0.00 0.00 1.40
2500 3391 1.707427 GACAAGCCATAGGATCCCCAT 59.293 52.381 8.55 0.00 33.88 4.00
2597 3488 8.946085 TGAACATAGGAAATGTATGTTTCACTC 58.054 33.333 9.27 0.00 46.41 3.51
2709 3603 5.221884 TGAGAAAAATTGGGTTGCAATGGAT 60.222 36.000 0.59 0.00 0.00 3.41
2711 3605 6.408869 AGAAAAATTGGGTTGCAATGGATAG 58.591 36.000 0.59 0.00 0.00 2.08
2820 3714 7.923878 GTGGAATAATGTTACAAACAACTTGGT 59.076 33.333 0.00 0.00 45.86 3.67
2844 3738 6.463995 TGGGTGCTTCAATAATTGGATTAC 57.536 37.500 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.383354 AGGGACTTGGAACTTATAAGTTGGGAC 62.383 44.444 30.66 17.82 43.13 4.46
21 22 7.444901 AGGGACTTGGAACTTATAAGTTGGGA 61.445 42.308 30.66 16.34 43.13 4.37
22 23 5.281037 AGGGACTTGGAACTTATAAGTTGGG 60.281 44.000 30.66 19.50 43.13 4.12
23 24 5.816682 AGGGACTTGGAACTTATAAGTTGG 58.183 41.667 30.66 19.78 43.13 3.77
24 25 8.857694 TTTAGGGACTTGGAACTTATAAGTTG 57.142 34.615 30.66 19.76 44.52 3.16
25 26 9.871175 TTTTTAGGGACTTGGAACTTATAAGTT 57.129 29.630 27.01 27.01 46.10 2.66
26 27 9.516546 CTTTTTAGGGACTTGGAACTTATAAGT 57.483 33.333 12.50 12.50 41.75 2.24
27 28 9.516546 ACTTTTTAGGGACTTGGAACTTATAAG 57.483 33.333 11.05 11.05 41.75 1.73
28 29 9.511272 GACTTTTTAGGGACTTGGAACTTATAA 57.489 33.333 0.00 0.00 41.75 0.98
29 30 8.105197 GGACTTTTTAGGGACTTGGAACTTATA 58.895 37.037 0.00 0.00 41.75 0.98
30 31 6.946583 GGACTTTTTAGGGACTTGGAACTTAT 59.053 38.462 0.00 0.00 41.75 1.73
31 32 6.301486 GGACTTTTTAGGGACTTGGAACTTA 58.699 40.000 0.00 0.00 41.75 2.24
32 33 5.138276 GGACTTTTTAGGGACTTGGAACTT 58.862 41.667 0.00 0.00 41.75 2.66
33 34 4.447325 GGGACTTTTTAGGGACTTGGAACT 60.447 45.833 0.00 0.00 41.75 3.01
34 35 3.825014 GGGACTTTTTAGGGACTTGGAAC 59.175 47.826 0.00 0.00 41.75 3.62
35 36 3.725267 AGGGACTTTTTAGGGACTTGGAA 59.275 43.478 0.00 0.00 34.75 3.53
36 37 3.332968 AGGGACTTTTTAGGGACTTGGA 58.667 45.455 0.00 0.00 34.75 3.53
37 38 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
38 39 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
39 40 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
40 41 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
41 42 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
42 43 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
43 44 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
44 45 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
45 46 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
59 60 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
60 61 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
61 62 5.073965 ACTTATAAGTCCCAGGAACCAAACA 59.926 40.000 12.50 0.00 32.86 2.83
62 63 5.567430 ACTTATAAGTCCCAGGAACCAAAC 58.433 41.667 12.50 0.00 32.86 2.93
63 64 5.853572 ACTTATAAGTCCCAGGAACCAAA 57.146 39.130 12.50 0.00 32.86 3.28
92 93 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
101 102 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
102 103 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
103 104 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
104 105 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
105 106 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
106 107 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
107 108 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
108 109 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
109 110 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
110 111 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
111 112 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
112 113 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
113 114 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
114 115 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
115 116 4.156477 CTCTCAAGGAGGGACTTATAGGG 58.844 52.174 0.00 0.00 41.55 3.53
116 117 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
117 118 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
118 119 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
119 120 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
120 121 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
121 122 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
122 123 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
123 124 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
124 125 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
125 126 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
140 141 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
141 142 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
142 143 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
143 144 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
144 145 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
145 146 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
146 147 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
147 148 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
148 149 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
149 150 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
150 151 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
151 152 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
152 153 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
153 154 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
154 155 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
155 156 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
156 157 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
157 158 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
158 159 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
159 160 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
160 161 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
161 162 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
162 163 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
163 164 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
164 165 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
165 166 6.144625 AGGAGGGACTTATAGGGACTTAAAG 58.855 44.000 0.00 0.00 41.55 1.85
166 167 6.114151 AGGAGGGACTTATAGGGACTTAAA 57.886 41.667 0.00 0.00 41.55 1.52
167 168 5.763239 AGGAGGGACTTATAGGGACTTAA 57.237 43.478 0.00 0.00 41.55 1.85
168 169 7.431936 AATAGGAGGGACTTATAGGGACTTA 57.568 40.000 0.00 0.00 41.55 2.24
169 170 5.970692 ATAGGAGGGACTTATAGGGACTT 57.029 43.478 0.00 0.00 41.55 3.01
170 171 5.970692 AATAGGAGGGACTTATAGGGACT 57.029 43.478 0.00 0.00 41.55 3.85
171 172 5.248705 CCAAATAGGAGGGACTTATAGGGAC 59.751 48.000 0.00 0.00 41.55 4.46
172 173 5.102346 ACCAAATAGGAGGGACTTATAGGGA 60.102 44.000 0.00 0.00 41.55 4.20
173 174 5.163390 ACCAAATAGGAGGGACTTATAGGG 58.837 45.833 0.00 0.00 41.55 3.53
174 175 6.765355 AACCAAATAGGAGGGACTTATAGG 57.235 41.667 0.00 0.00 41.55 2.57
175 176 9.155785 TCTAAACCAAATAGGAGGGACTTATAG 57.844 37.037 0.00 0.00 41.55 1.31
176 177 9.684702 ATCTAAACCAAATAGGAGGGACTTATA 57.315 33.333 0.00 0.00 41.55 0.98
177 178 8.440771 CATCTAAACCAAATAGGAGGGACTTAT 58.559 37.037 0.00 0.00 41.55 1.73
178 179 7.147373 CCATCTAAACCAAATAGGAGGGACTTA 60.147 40.741 0.00 0.00 41.55 2.24
179 180 6.353951 CCATCTAAACCAAATAGGAGGGACTT 60.354 42.308 0.00 0.00 41.55 3.01
181 182 5.377478 CCATCTAAACCAAATAGGAGGGAC 58.623 45.833 0.00 0.00 41.22 4.46
182 183 4.415512 CCCATCTAAACCAAATAGGAGGGA 59.584 45.833 0.00 0.00 41.22 4.20
183 184 4.415512 TCCCATCTAAACCAAATAGGAGGG 59.584 45.833 0.00 0.00 41.22 4.30
184 185 5.132816 AGTCCCATCTAAACCAAATAGGAGG 59.867 44.000 0.00 0.00 41.22 4.30
185 186 6.253946 AGTCCCATCTAAACCAAATAGGAG 57.746 41.667 0.00 0.00 41.22 3.69
186 187 6.652205 AAGTCCCATCTAAACCAAATAGGA 57.348 37.500 0.00 0.00 41.22 2.94
187 188 9.726438 CTATAAGTCCCATCTAAACCAAATAGG 57.274 37.037 0.00 0.00 45.67 2.57
188 189 9.726438 CCTATAAGTCCCATCTAAACCAAATAG 57.274 37.037 0.00 0.00 0.00 1.73
189 190 8.665906 CCCTATAAGTCCCATCTAAACCAAATA 58.334 37.037 0.00 0.00 0.00 1.40
190 191 7.352522 TCCCTATAAGTCCCATCTAAACCAAAT 59.647 37.037 0.00 0.00 0.00 2.32
191 192 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
192 193 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
193 194 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
194 195 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
195 196 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
196 197 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
197 198 8.272173 CAAAAAGTCCCTATAAGTCCCATCTAA 58.728 37.037 0.00 0.00 0.00 2.10
198 199 7.626084 TCAAAAAGTCCCTATAAGTCCCATCTA 59.374 37.037 0.00 0.00 0.00 1.98
199 200 6.447084 TCAAAAAGTCCCTATAAGTCCCATCT 59.553 38.462 0.00 0.00 0.00 2.90
200 201 6.659824 TCAAAAAGTCCCTATAAGTCCCATC 58.340 40.000 0.00 0.00 0.00 3.51
201 202 6.652205 TCAAAAAGTCCCTATAAGTCCCAT 57.348 37.500 0.00 0.00 0.00 4.00
202 203 6.045106 ACTTCAAAAAGTCCCTATAAGTCCCA 59.955 38.462 0.00 0.00 42.10 4.37
203 204 6.482524 ACTTCAAAAAGTCCCTATAAGTCCC 58.517 40.000 0.00 0.00 42.10 4.46
217 218 8.638873 ACTTATTGGTTTAGGGACTTCAAAAAG 58.361 33.333 0.00 0.00 41.75 2.27
218 219 8.541899 ACTTATTGGTTTAGGGACTTCAAAAA 57.458 30.769 0.00 0.00 41.75 1.94
219 220 7.231925 GGACTTATTGGTTTAGGGACTTCAAAA 59.768 37.037 0.00 0.00 41.75 2.44
220 221 6.717997 GGACTTATTGGTTTAGGGACTTCAAA 59.282 38.462 0.00 0.00 41.75 2.69
221 222 6.243148 GGACTTATTGGTTTAGGGACTTCAA 58.757 40.000 0.00 0.00 41.75 2.69
222 223 5.280830 GGGACTTATTGGTTTAGGGACTTCA 60.281 44.000 0.00 0.00 41.75 3.02
223 224 5.045066 AGGGACTTATTGGTTTAGGGACTTC 60.045 44.000 0.00 0.00 34.75 3.01
224 225 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
225 226 4.445564 AGGGACTTATTGGTTTAGGGACT 58.554 43.478 0.00 0.00 38.08 3.85
226 227 4.226620 TGAGGGACTTATTGGTTTAGGGAC 59.773 45.833 0.00 0.00 41.55 4.46
227 228 4.440808 TGAGGGACTTATTGGTTTAGGGA 58.559 43.478 0.00 0.00 41.55 4.20
228 229 4.855298 TGAGGGACTTATTGGTTTAGGG 57.145 45.455 0.00 0.00 41.55 3.53
229 230 6.492087 TGTTTTGAGGGACTTATTGGTTTAGG 59.508 38.462 0.00 0.00 41.55 2.69
230 231 7.519032 TGTTTTGAGGGACTTATTGGTTTAG 57.481 36.000 0.00 0.00 41.55 1.85
231 232 7.899648 TTGTTTTGAGGGACTTATTGGTTTA 57.100 32.000 0.00 0.00 41.55 2.01
232 233 6.800072 TTGTTTTGAGGGACTTATTGGTTT 57.200 33.333 0.00 0.00 41.55 3.27
233 234 6.155393 TGTTTGTTTTGAGGGACTTATTGGTT 59.845 34.615 0.00 0.00 41.55 3.67
234 235 5.659079 TGTTTGTTTTGAGGGACTTATTGGT 59.341 36.000 0.00 0.00 41.55 3.67
235 236 5.983118 GTGTTTGTTTTGAGGGACTTATTGG 59.017 40.000 0.00 0.00 41.55 3.16
236 237 5.983118 GGTGTTTGTTTTGAGGGACTTATTG 59.017 40.000 0.00 0.00 41.55 1.90
237 238 5.069914 GGGTGTTTGTTTTGAGGGACTTATT 59.930 40.000 0.00 0.00 41.55 1.40
238 239 4.587262 GGGTGTTTGTTTTGAGGGACTTAT 59.413 41.667 0.00 0.00 41.55 1.73
239 240 3.955551 GGGTGTTTGTTTTGAGGGACTTA 59.044 43.478 0.00 0.00 41.55 2.24
240 241 2.764010 GGGTGTTTGTTTTGAGGGACTT 59.236 45.455 0.00 0.00 41.55 3.01
242 243 2.361119 GAGGGTGTTTGTTTTGAGGGAC 59.639 50.000 0.00 0.00 0.00 4.46
243 244 2.243736 AGAGGGTGTTTGTTTTGAGGGA 59.756 45.455 0.00 0.00 0.00 4.20
244 245 2.362077 CAGAGGGTGTTTGTTTTGAGGG 59.638 50.000 0.00 0.00 0.00 4.30
245 246 3.287222 TCAGAGGGTGTTTGTTTTGAGG 58.713 45.455 0.00 0.00 0.00 3.86
246 247 3.947834 ACTCAGAGGGTGTTTGTTTTGAG 59.052 43.478 1.53 0.00 37.43 3.02
247 248 3.945285 GACTCAGAGGGTGTTTGTTTTGA 59.055 43.478 1.53 0.00 0.00 2.69
248 249 3.947834 AGACTCAGAGGGTGTTTGTTTTG 59.052 43.478 1.53 0.00 0.00 2.44
249 250 4.200092 GAGACTCAGAGGGTGTTTGTTTT 58.800 43.478 1.53 0.00 0.00 2.43
250 251 3.433740 GGAGACTCAGAGGGTGTTTGTTT 60.434 47.826 4.53 0.00 0.00 2.83
251 252 2.104963 GGAGACTCAGAGGGTGTTTGTT 59.895 50.000 4.53 0.00 0.00 2.83
252 253 1.694696 GGAGACTCAGAGGGTGTTTGT 59.305 52.381 4.53 0.00 0.00 2.83
253 254 1.002544 GGGAGACTCAGAGGGTGTTTG 59.997 57.143 4.53 0.00 0.00 2.93
254 255 1.132689 AGGGAGACTCAGAGGGTGTTT 60.133 52.381 4.53 0.00 0.00 2.83
255 256 0.489567 AGGGAGACTCAGAGGGTGTT 59.510 55.000 4.53 0.00 0.00 3.32
256 257 0.040499 GAGGGAGACTCAGAGGGTGT 59.960 60.000 4.53 0.00 45.85 4.16
257 258 2.894858 GAGGGAGACTCAGAGGGTG 58.105 63.158 4.53 0.00 45.85 4.61
265 266 1.765904 GGGGAATTGAGAGGGAGACTC 59.234 57.143 0.00 0.00 46.98 3.36
266 267 1.367848 AGGGGAATTGAGAGGGAGACT 59.632 52.381 0.00 0.00 0.00 3.24
267 268 1.886422 AGGGGAATTGAGAGGGAGAC 58.114 55.000 0.00 0.00 0.00 3.36
268 269 2.668850 AAGGGGAATTGAGAGGGAGA 57.331 50.000 0.00 0.00 0.00 3.71
269 270 2.849318 AGAAAGGGGAATTGAGAGGGAG 59.151 50.000 0.00 0.00 0.00 4.30
270 271 2.846827 GAGAAAGGGGAATTGAGAGGGA 59.153 50.000 0.00 0.00 0.00 4.20
271 272 2.092158 GGAGAAAGGGGAATTGAGAGGG 60.092 54.545 0.00 0.00 0.00 4.30
272 273 2.092158 GGGAGAAAGGGGAATTGAGAGG 60.092 54.545 0.00 0.00 0.00 3.69
273 274 2.092158 GGGGAGAAAGGGGAATTGAGAG 60.092 54.545 0.00 0.00 0.00 3.20
274 275 1.923148 GGGGAGAAAGGGGAATTGAGA 59.077 52.381 0.00 0.00 0.00 3.27
275 276 1.408822 CGGGGAGAAAGGGGAATTGAG 60.409 57.143 0.00 0.00 0.00 3.02
276 277 0.623723 CGGGGAGAAAGGGGAATTGA 59.376 55.000 0.00 0.00 0.00 2.57
277 278 0.623723 TCGGGGAGAAAGGGGAATTG 59.376 55.000 0.00 0.00 0.00 2.32
278 279 0.919710 CTCGGGGAGAAAGGGGAATT 59.080 55.000 0.00 0.00 0.00 2.17
279 280 0.253207 ACTCGGGGAGAAAGGGGAAT 60.253 55.000 0.00 0.00 33.32 3.01
280 281 0.908180 GACTCGGGGAGAAAGGGGAA 60.908 60.000 0.00 0.00 33.32 3.97
281 282 1.305887 GACTCGGGGAGAAAGGGGA 60.306 63.158 0.00 0.00 33.32 4.81
282 283 2.368011 GGACTCGGGGAGAAAGGGG 61.368 68.421 0.00 0.00 33.32 4.79
283 284 0.032416 TAGGACTCGGGGAGAAAGGG 60.032 60.000 0.00 0.00 33.32 3.95
284 285 1.481363 GTTAGGACTCGGGGAGAAAGG 59.519 57.143 0.00 0.00 33.32 3.11
285 286 1.481363 GGTTAGGACTCGGGGAGAAAG 59.519 57.143 0.00 0.00 33.32 2.62
286 287 1.565067 GGTTAGGACTCGGGGAGAAA 58.435 55.000 0.00 0.00 33.32 2.52
287 288 0.325016 GGGTTAGGACTCGGGGAGAA 60.325 60.000 0.00 0.00 33.32 2.87
288 289 1.219824 AGGGTTAGGACTCGGGGAGA 61.220 60.000 0.00 0.00 33.32 3.71
289 290 0.554792 TAGGGTTAGGACTCGGGGAG 59.445 60.000 0.00 0.00 35.52 4.30
290 291 0.554792 CTAGGGTTAGGACTCGGGGA 59.445 60.000 0.00 0.00 0.00 4.81
291 292 1.114119 GCTAGGGTTAGGACTCGGGG 61.114 65.000 0.00 0.00 0.00 5.73
292 293 0.106116 AGCTAGGGTTAGGACTCGGG 60.106 60.000 0.00 0.00 0.00 5.14
293 294 1.033574 CAGCTAGGGTTAGGACTCGG 58.966 60.000 0.00 0.00 0.00 4.63
294 295 0.386113 GCAGCTAGGGTTAGGACTCG 59.614 60.000 0.00 0.00 0.00 4.18
295 296 0.386113 CGCAGCTAGGGTTAGGACTC 59.614 60.000 0.00 0.00 0.00 3.36
296 297 2.506065 CGCAGCTAGGGTTAGGACT 58.494 57.895 0.00 0.00 0.00 3.85
339 340 4.752594 TCCCTACCTGGCACCCCC 62.753 72.222 0.00 0.00 0.00 5.40
340 341 3.090532 CTCCCTACCTGGCACCCC 61.091 72.222 0.00 0.00 0.00 4.95
341 342 2.040606 TCTCCCTACCTGGCACCC 59.959 66.667 0.00 0.00 0.00 4.61
342 343 2.736826 GCTCTCCCTACCTGGCACC 61.737 68.421 0.00 0.00 0.00 5.01
343 344 2.904131 GCTCTCCCTACCTGGCAC 59.096 66.667 0.00 0.00 0.00 5.01
344 345 2.759973 CGCTCTCCCTACCTGGCA 60.760 66.667 0.00 0.00 0.00 4.92
345 346 4.228567 GCGCTCTCCCTACCTGGC 62.229 72.222 0.00 0.00 0.00 4.85
346 347 3.541713 GGCGCTCTCCCTACCTGG 61.542 72.222 7.64 0.00 0.00 4.45
347 348 2.136878 ATGGCGCTCTCCCTACCTG 61.137 63.158 7.64 0.00 0.00 4.00
348 349 2.136878 CATGGCGCTCTCCCTACCT 61.137 63.158 7.64 0.00 0.00 3.08
349 350 2.423446 CATGGCGCTCTCCCTACC 59.577 66.667 7.64 0.00 0.00 3.18
350 351 1.476007 ATCCATGGCGCTCTCCCTAC 61.476 60.000 6.96 0.00 0.00 3.18
351 352 1.152247 ATCCATGGCGCTCTCCCTA 60.152 57.895 6.96 0.00 0.00 3.53
352 353 2.447379 ATCCATGGCGCTCTCCCT 60.447 61.111 6.96 0.00 0.00 4.20
353 354 2.281345 CATCCATGGCGCTCTCCC 60.281 66.667 6.96 0.00 0.00 4.30
354 355 1.301558 CTCATCCATGGCGCTCTCC 60.302 63.158 6.96 0.00 0.00 3.71
355 356 1.301558 CCTCATCCATGGCGCTCTC 60.302 63.158 6.96 0.00 0.00 3.20
356 357 2.815945 CCCTCATCCATGGCGCTCT 61.816 63.158 6.96 0.00 0.00 4.09
357 358 2.281345 CCCTCATCCATGGCGCTC 60.281 66.667 6.96 0.00 0.00 5.03
358 359 4.575973 GCCCTCATCCATGGCGCT 62.576 66.667 6.96 0.00 35.08 5.92
362 363 4.240103 TCGCGCCCTCATCCATGG 62.240 66.667 4.97 4.97 0.00 3.66
363 364 2.969238 GTCGCGCCCTCATCCATG 60.969 66.667 0.00 0.00 0.00 3.66
364 365 4.241555 GGTCGCGCCCTCATCCAT 62.242 66.667 0.00 0.00 0.00 3.41
387 388 4.467084 TCTTCCACCGCGCCATCC 62.467 66.667 0.00 0.00 0.00 3.51
388 389 2.892425 CTCTTCCACCGCGCCATC 60.892 66.667 0.00 0.00 0.00 3.51
389 390 3.376935 CTCTCTTCCACCGCGCCAT 62.377 63.158 0.00 0.00 0.00 4.40
390 391 4.069232 CTCTCTTCCACCGCGCCA 62.069 66.667 0.00 0.00 0.00 5.69
393 394 4.069232 TGGCTCTCTTCCACCGCG 62.069 66.667 0.00 0.00 0.00 6.46
394 395 2.435059 GTGGCTCTCTTCCACCGC 60.435 66.667 0.89 0.00 46.26 5.68
398 399 4.069232 CGCCGTGGCTCTCTTCCA 62.069 66.667 9.55 0.00 39.32 3.53
400 401 4.443266 AGCGCCGTGGCTCTCTTC 62.443 66.667 2.29 0.00 39.61 2.87
401 402 4.749310 CAGCGCCGTGGCTCTCTT 62.749 66.667 2.29 0.00 42.53 2.85
415 416 4.437587 ATGGCCTCCTGGTGCAGC 62.438 66.667 9.47 9.47 35.27 5.25
416 417 2.439701 CATGGCCTCCTGGTGCAG 60.440 66.667 3.32 0.00 35.27 4.41
417 418 4.051167 CCATGGCCTCCTGGTGCA 62.051 66.667 3.32 0.00 35.27 4.57
418 419 4.052518 ACCATGGCCTCCTGGTGC 62.053 66.667 20.16 0.00 44.06 5.01
420 421 3.341629 CCACCATGGCCTCCTGGT 61.342 66.667 13.04 16.57 46.68 4.00
421 422 4.133373 CCCACCATGGCCTCCTGG 62.133 72.222 13.04 11.66 35.79 4.45
422 423 4.133373 CCCCACCATGGCCTCCTG 62.133 72.222 13.04 1.37 35.79 3.86
423 424 4.369591 TCCCCACCATGGCCTCCT 62.370 66.667 13.04 0.00 35.79 3.69
424 425 3.813724 CTCCCCACCATGGCCTCC 61.814 72.222 13.04 0.00 35.79 4.30
425 426 3.813724 CCTCCCCACCATGGCCTC 61.814 72.222 13.04 0.00 35.79 4.70
443 444 2.265182 ATTGTTTGACCACCCGCCG 61.265 57.895 0.00 0.00 0.00 6.46
444 445 1.288752 CATTGTTTGACCACCCGCC 59.711 57.895 0.00 0.00 0.00 6.13
445 446 1.175983 TCCATTGTTTGACCACCCGC 61.176 55.000 0.00 0.00 0.00 6.13
446 447 0.881118 CTCCATTGTTTGACCACCCG 59.119 55.000 0.00 0.00 0.00 5.28
447 448 1.256812 CCTCCATTGTTTGACCACCC 58.743 55.000 0.00 0.00 0.00 4.61
448 449 1.203001 TCCCTCCATTGTTTGACCACC 60.203 52.381 0.00 0.00 0.00 4.61
449 450 2.162681 CTCCCTCCATTGTTTGACCAC 58.837 52.381 0.00 0.00 0.00 4.16
450 451 1.075374 CCTCCCTCCATTGTTTGACCA 59.925 52.381 0.00 0.00 0.00 4.02
451 452 1.354368 TCCTCCCTCCATTGTTTGACC 59.646 52.381 0.00 0.00 0.00 4.02
452 453 2.619074 CCTCCTCCCTCCATTGTTTGAC 60.619 54.545 0.00 0.00 0.00 3.18
453 454 1.635487 CCTCCTCCCTCCATTGTTTGA 59.365 52.381 0.00 0.00 0.00 2.69
454 455 1.635487 TCCTCCTCCCTCCATTGTTTG 59.365 52.381 0.00 0.00 0.00 2.93
455 456 1.918957 CTCCTCCTCCCTCCATTGTTT 59.081 52.381 0.00 0.00 0.00 2.83
456 457 1.589414 CTCCTCCTCCCTCCATTGTT 58.411 55.000 0.00 0.00 0.00 2.83
457 458 0.327000 CCTCCTCCTCCCTCCATTGT 60.327 60.000 0.00 0.00 0.00 2.71
458 459 1.704007 GCCTCCTCCTCCCTCCATTG 61.704 65.000 0.00 0.00 0.00 2.82
459 460 1.385206 GCCTCCTCCTCCCTCCATT 60.385 63.158 0.00 0.00 0.00 3.16
460 461 2.288643 GCCTCCTCCTCCCTCCAT 59.711 66.667 0.00 0.00 0.00 3.41
461 462 2.955246 AGCCTCCTCCTCCCTCCA 60.955 66.667 0.00 0.00 0.00 3.86
462 463 2.445654 CAGCCTCCTCCTCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
463 464 2.063378 CACAGCCTCCTCCTCCCTC 61.063 68.421 0.00 0.00 0.00 4.30
464 465 2.040278 CACAGCCTCCTCCTCCCT 59.960 66.667 0.00 0.00 0.00 4.20
465 466 3.791586 GCACAGCCTCCTCCTCCC 61.792 72.222 0.00 0.00 0.00 4.30
466 467 4.154347 CGCACAGCCTCCTCCTCC 62.154 72.222 0.00 0.00 0.00 4.30
467 468 2.948720 AACGCACAGCCTCCTCCTC 61.949 63.158 0.00 0.00 0.00 3.71
468 469 2.925170 AACGCACAGCCTCCTCCT 60.925 61.111 0.00 0.00 0.00 3.69
469 470 2.743928 CAACGCACAGCCTCCTCC 60.744 66.667 0.00 0.00 0.00 4.30
470 471 2.031163 ACAACGCACAGCCTCCTC 59.969 61.111 0.00 0.00 0.00 3.71
471 472 2.281070 CACAACGCACAGCCTCCT 60.281 61.111 0.00 0.00 0.00 3.69
472 473 4.030452 GCACAACGCACAGCCTCC 62.030 66.667 0.00 0.00 41.79 4.30
481 482 2.658268 GTTTGCCCTGCACAACGC 60.658 61.111 0.00 0.00 38.71 4.84
482 483 2.027460 GGTTTGCCCTGCACAACG 59.973 61.111 0.00 0.00 38.71 4.10
514 515 2.908940 CCTCCGAATGGCCATGGC 60.909 66.667 29.47 29.47 41.06 4.40
515 516 1.526917 GACCTCCGAATGGCCATGG 60.527 63.158 21.63 17.64 34.14 3.66
516 517 1.526917 GGACCTCCGAATGGCCATG 60.527 63.158 21.63 7.65 34.14 3.66
517 518 2.757124 GGGACCTCCGAATGGCCAT 61.757 63.158 14.09 14.09 36.71 4.40
518 519 3.407967 GGGACCTCCGAATGGCCA 61.408 66.667 8.56 8.56 36.71 5.36
519 520 2.978946 TTGGGACCTCCGAATGGCC 61.979 63.158 0.00 0.00 38.76 5.36
520 521 1.749258 GTTGGGACCTCCGAATGGC 60.749 63.158 0.00 0.00 36.15 4.40
521 522 1.077716 GGTTGGGACCTCCGAATGG 60.078 63.158 0.00 0.00 42.99 3.16
522 523 4.637771 GGTTGGGACCTCCGAATG 57.362 61.111 0.00 0.00 42.99 2.67
530 531 2.983592 CCACGCAAGGTTGGGACC 60.984 66.667 13.21 0.00 46.92 4.46
531 532 2.203294 ACCACGCAAGGTTGGGAC 60.203 61.111 13.21 0.00 43.04 4.46
532 533 2.112297 GACCACGCAAGGTTGGGA 59.888 61.111 13.21 0.00 43.38 4.37
533 534 1.795170 CTTGACCACGCAAGGTTGGG 61.795 60.000 5.30 5.30 43.38 4.12
534 535 1.654220 CTTGACCACGCAAGGTTGG 59.346 57.895 0.00 0.00 43.38 3.77
539 540 2.664851 TCGCCTTGACCACGCAAG 60.665 61.111 0.00 0.00 43.74 4.01
540 541 2.664851 CTCGCCTTGACCACGCAA 60.665 61.111 0.00 0.00 0.00 4.85
541 542 4.680237 CCTCGCCTTGACCACGCA 62.680 66.667 0.00 0.00 0.00 5.24
570 571 0.035439 TTCTTCGGTGATGGAAGGCC 60.035 55.000 0.00 0.00 40.95 5.19
571 572 1.373570 CTTCTTCGGTGATGGAAGGC 58.626 55.000 2.12 0.00 40.95 4.35
572 573 2.029838 CCTTCTTCGGTGATGGAAGG 57.970 55.000 6.25 6.25 45.49 3.46
573 574 2.014068 GCCCTTCTTCGGTGATGGAAG 61.014 57.143 10.47 0.00 41.74 3.46
574 575 0.035439 GCCCTTCTTCGGTGATGGAA 60.035 55.000 10.47 0.00 34.36 3.53
575 576 1.602237 GCCCTTCTTCGGTGATGGA 59.398 57.895 10.47 0.00 34.36 3.41
576 577 1.815421 CGCCCTTCTTCGGTGATGG 60.815 63.158 4.38 4.38 32.29 3.51
577 578 1.084370 GTCGCCCTTCTTCGGTGATG 61.084 60.000 0.00 0.00 41.74 3.07
578 579 1.218316 GTCGCCCTTCTTCGGTGAT 59.782 57.895 0.00 0.00 41.74 3.06
579 580 2.654877 GTCGCCCTTCTTCGGTGA 59.345 61.111 0.00 0.00 37.57 4.02
580 581 2.809601 CGTCGCCCTTCTTCGGTG 60.810 66.667 0.00 0.00 0.00 4.94
581 582 4.065281 CCGTCGCCCTTCTTCGGT 62.065 66.667 0.00 0.00 36.99 4.69
643 644 2.283966 CTCACCCCTCCTCCACGT 60.284 66.667 0.00 0.00 0.00 4.49
644 645 3.077556 CCTCACCCCTCCTCCACG 61.078 72.222 0.00 0.00 0.00 4.94
715 845 9.803507 ATCTCATGGCAGAAATATTCAAATCTA 57.196 29.630 0.00 0.00 0.00 1.98
716 846 8.577296 CATCTCATGGCAGAAATATTCAAATCT 58.423 33.333 0.00 0.00 0.00 2.40
717 847 7.813148 CCATCTCATGGCAGAAATATTCAAATC 59.187 37.037 0.00 0.00 44.70 2.17
718 848 7.667557 CCATCTCATGGCAGAAATATTCAAAT 58.332 34.615 0.00 0.00 44.70 2.32
719 849 7.046292 CCATCTCATGGCAGAAATATTCAAA 57.954 36.000 0.00 0.00 44.70 2.69
720 850 6.644248 CCATCTCATGGCAGAAATATTCAA 57.356 37.500 0.00 0.00 44.70 2.69
743 876 6.149142 TGGTGCAGCAAATAAAATTTTGGATC 59.851 34.615 17.80 0.00 37.13 3.36
774 907 5.834204 TCTAAGTAATCTGTCCCTTCTAGCC 59.166 44.000 0.00 0.00 0.00 3.93
817 988 8.092687 AGTGCAGCAAATAAAATTTCAGAGAAT 58.907 29.630 0.00 0.00 0.00 2.40
818 989 7.436118 AGTGCAGCAAATAAAATTTCAGAGAA 58.564 30.769 0.00 0.00 0.00 2.87
826 997 8.829612 GCCAAATATAGTGCAGCAAATAAAATT 58.170 29.630 0.00 0.00 0.00 1.82
827 998 8.206189 AGCCAAATATAGTGCAGCAAATAAAAT 58.794 29.630 0.00 0.00 0.00 1.82
828 999 7.555087 AGCCAAATATAGTGCAGCAAATAAAA 58.445 30.769 0.00 0.00 0.00 1.52
829 1000 7.111247 AGCCAAATATAGTGCAGCAAATAAA 57.889 32.000 0.00 0.00 0.00 1.40
830 1001 6.713762 AGCCAAATATAGTGCAGCAAATAA 57.286 33.333 0.00 0.00 0.00 1.40
831 1002 7.223584 TCTAGCCAAATATAGTGCAGCAAATA 58.776 34.615 0.00 0.00 0.00 1.40
832 1003 6.064060 TCTAGCCAAATATAGTGCAGCAAAT 58.936 36.000 0.00 0.00 0.00 2.32
833 1004 5.436175 TCTAGCCAAATATAGTGCAGCAAA 58.564 37.500 0.00 0.00 0.00 3.68
834 1005 5.034852 TCTAGCCAAATATAGTGCAGCAA 57.965 39.130 0.00 0.00 0.00 3.91
835 1006 4.503817 CCTCTAGCCAAATATAGTGCAGCA 60.504 45.833 0.00 0.00 0.00 4.41
836 1007 3.999663 CCTCTAGCCAAATATAGTGCAGC 59.000 47.826 0.00 0.00 0.00 5.25
837 1008 5.474578 TCCTCTAGCCAAATATAGTGCAG 57.525 43.478 0.00 0.00 0.00 4.41
838 1009 5.887214 TTCCTCTAGCCAAATATAGTGCA 57.113 39.130 0.00 0.00 0.00 4.57
839 1010 6.055588 TGTTTCCTCTAGCCAAATATAGTGC 58.944 40.000 0.00 0.00 0.00 4.40
840 1011 7.500992 TCTGTTTCCTCTAGCCAAATATAGTG 58.499 38.462 0.00 0.00 0.00 2.74
841 1012 7.676683 TCTGTTTCCTCTAGCCAAATATAGT 57.323 36.000 0.00 0.00 0.00 2.12
845 1016 8.090788 AGTAATCTGTTTCCTCTAGCCAAATA 57.909 34.615 0.00 0.00 0.00 1.40
851 1022 8.132995 GTCTCTAAGTAATCTGTTTCCTCTAGC 58.867 40.741 0.00 0.00 0.00 3.42
853 1024 8.114102 TGGTCTCTAAGTAATCTGTTTCCTCTA 58.886 37.037 0.00 0.00 0.00 2.43
855 1026 7.122948 TCTGGTCTCTAAGTAATCTGTTTCCTC 59.877 40.741 0.00 0.00 0.00 3.71
857 1028 7.171630 TCTGGTCTCTAAGTAATCTGTTTCC 57.828 40.000 0.00 0.00 0.00 3.13
859 1030 9.442047 CAAATCTGGTCTCTAAGTAATCTGTTT 57.558 33.333 0.00 0.00 0.00 2.83
874 1045 0.111061 TGGTGCAGCAAATCTGGTCT 59.889 50.000 17.80 0.00 43.06 3.85
875 1046 1.180029 ATGGTGCAGCAAATCTGGTC 58.820 50.000 24.18 0.00 43.06 4.02
876 1047 2.094675 GTATGGTGCAGCAAATCTGGT 58.905 47.619 24.18 6.93 43.06 4.00
877 1048 2.093890 TGTATGGTGCAGCAAATCTGG 58.906 47.619 24.18 0.00 43.06 3.86
878 1049 2.488937 TGTGTATGGTGCAGCAAATCTG 59.511 45.455 24.18 0.00 45.62 2.90
879 1050 2.794103 TGTGTATGGTGCAGCAAATCT 58.206 42.857 24.18 8.94 0.00 2.40
880 1051 3.574284 TTGTGTATGGTGCAGCAAATC 57.426 42.857 24.18 15.67 0.00 2.17
891 1076 5.124297 TGTGCAGAAGATCAATTGTGTATGG 59.876 40.000 5.13 0.00 0.00 2.74
946 1249 6.661777 AGTACTTTGTACTCCTAGTCCCTAG 58.338 44.000 4.72 0.00 34.16 3.02
947 1250 6.216251 TGAGTACTTTGTACTCCTAGTCCCTA 59.784 42.308 25.60 9.01 42.32 3.53
951 1254 7.627298 TCATGAGTACTTTGTACTCCTAGTC 57.373 40.000 25.60 9.36 42.32 2.59
952 1255 8.596781 AATCATGAGTACTTTGTACTCCTAGT 57.403 34.615 25.60 13.27 42.32 2.57
999 1419 9.927081 AGTAGATAAGTTGAATTTGGATCCATT 57.073 29.630 17.06 7.93 0.00 3.16
1074 1496 9.255304 TCAATAACCTTATCAAAACAAAAGCAC 57.745 29.630 0.00 0.00 0.00 4.40
1153 1578 4.155826 TGCAACTTCCAAATAATGAGGTCG 59.844 41.667 0.00 0.00 0.00 4.79
1154 1579 5.048083 TGTGCAACTTCCAAATAATGAGGTC 60.048 40.000 0.00 0.00 38.04 3.85
1216 1641 7.219484 CCAATTCTTGGTCAGATGTTACTTT 57.781 36.000 0.00 0.00 45.93 2.66
1260 1685 4.460263 TGTGCACAACCTTTGTCTTAGAT 58.540 39.130 19.28 0.00 43.23 1.98
1345 1770 3.081061 TGTTGTTAGGTTGGCTATGCAG 58.919 45.455 0.00 0.00 0.00 4.41
1416 1865 1.338105 CCAACATGCTCGTTCTCAGGA 60.338 52.381 0.00 0.00 0.00 3.86
1425 1874 1.805943 TCATCAACACCAACATGCTCG 59.194 47.619 0.00 0.00 0.00 5.03
1483 1953 3.390003 TGGAACAAGGAACCACGAC 57.610 52.632 0.00 0.00 31.92 4.34
1513 1983 8.084985 TCATGACCAGGAACATAGTATTTGTA 57.915 34.615 0.00 0.00 0.00 2.41
1519 1989 4.342378 GCTCTCATGACCAGGAACATAGTA 59.658 45.833 0.00 0.00 0.00 1.82
1545 2015 0.394899 TCTCATCCTCGCTCTCAGCA 60.395 55.000 0.00 0.00 42.58 4.41
1576 2124 9.352191 CAATTCCTCATCTTCCTCTATTTCAAT 57.648 33.333 0.00 0.00 0.00 2.57
1582 2130 5.619220 GTGCAATTCCTCATCTTCCTCTAT 58.381 41.667 0.00 0.00 0.00 1.98
1677 2226 5.587043 CACCAACTTAAACTCCGCCATATTA 59.413 40.000 0.00 0.00 0.00 0.98
1686 2235 4.578928 TGAGAAAGCACCAACTTAAACTCC 59.421 41.667 0.00 0.00 0.00 3.85
1804 2353 3.601443 AGAAGCATATATCCTCCACGC 57.399 47.619 0.00 0.00 0.00 5.34
1827 2376 1.293924 CGGTGCACTCATCTTCCATC 58.706 55.000 17.98 0.00 0.00 3.51
1976 2844 7.378461 CGCTTGTTTGCATTCTTTAACTTCTTA 59.622 33.333 0.00 0.00 0.00 2.10
2003 2871 3.461061 CTTCACGTGCTCACATATCCAT 58.539 45.455 11.67 0.00 0.00 3.41
2074 2943 4.162320 TCGATTCCATGGCTCTCTTTAAGT 59.838 41.667 6.96 0.00 0.00 2.24
2084 2953 2.092753 AGTTGATGTCGATTCCATGGCT 60.093 45.455 6.96 0.00 0.00 4.75
2085 2954 2.289002 GAGTTGATGTCGATTCCATGGC 59.711 50.000 6.96 0.00 0.00 4.40
2114 2983 4.627255 GCCAGCAGCTTCACCCATATATAT 60.627 45.833 0.00 0.00 38.99 0.86
2126 2995 1.593296 CCTTCAAGGCCAGCAGCTTC 61.593 60.000 5.01 0.00 43.05 3.86
2186 3055 6.739112 AGTTTCTATTTGTGCCTTGAAACTC 58.261 36.000 11.56 0.00 45.60 3.01
2204 3073 0.475044 TACCGGGGCAACAAGTTTCT 59.525 50.000 6.32 0.00 39.74 2.52
2270 3139 6.396459 TTCAAAGCGACAAAAATTCGTTTT 57.604 29.167 1.42 1.42 46.59 2.43
2274 3143 4.027475 GCTTCAAAGCGACAAAAATTCG 57.973 40.909 0.00 0.00 42.88 3.34
2500 3391 2.741145 GGTGCATATGGTTAAACCCCA 58.259 47.619 4.56 0.00 37.50 4.96
2536 3427 4.212847 CACTTCTTTCACACCTGTCATCAG 59.787 45.833 0.00 0.00 41.01 2.90
2550 3441 3.493767 ACCTCTGGGAACACTTCTTTC 57.506 47.619 0.00 0.00 35.60 2.62
2597 3488 2.833794 TCTTCTTGAAGTTGGACACCG 58.166 47.619 9.80 0.00 0.00 4.94
2657 3549 3.737559 ATGGGTTCCATGAGTAAGCAA 57.262 42.857 0.00 0.00 43.39 3.91
2678 3570 8.770438 TGCAACCCAATTTTTCTCAAATATAC 57.230 30.769 0.00 0.00 0.00 1.47
2709 3603 2.436646 GCCGCTGGCTTTGCTCTA 60.437 61.111 11.61 0.00 46.69 2.43
2799 3693 7.147637 ACCCAACCAAGTTGTTTGTAACATTAT 60.148 33.333 11.63 0.00 41.41 1.28
2801 3695 5.046231 ACCCAACCAAGTTGTTTGTAACATT 60.046 36.000 11.63 0.00 41.41 2.71
2820 3714 6.405286 CGTAATCCAATTATTGAAGCACCCAA 60.405 38.462 6.50 0.00 0.00 4.12
2823 3717 4.976116 GCGTAATCCAATTATTGAAGCACC 59.024 41.667 6.50 0.00 0.00 5.01
2844 3738 0.307760 GTTCAAGGACTTGTGGTGCG 59.692 55.000 11.44 0.00 41.32 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.