Multiple sequence alignment - TraesCS3B01G598600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G598600 chr3B 100.000 4671 0 0 1 4671 820134259 820129589 0.000000e+00 8626
1 TraesCS3B01G598600 chr3B 99.168 2765 16 3 1731 4494 820163241 820165999 0.000000e+00 4972
2 TraesCS3B01G598600 chr3B 84.404 1167 142 29 103 1237 252672444 252671286 0.000000e+00 1110
3 TraesCS3B01G598600 chr3B 79.520 1250 219 23 2373 3587 820337182 820335935 0.000000e+00 856
4 TraesCS3B01G598600 chr3B 91.469 422 31 4 838 1257 820161922 820162340 4.050000e-160 575
5 TraesCS3B01G598600 chr3B 87.143 350 33 10 1189 1533 820162212 820162554 2.040000e-103 387
6 TraesCS3B01G598600 chr3B 78.541 466 86 11 1738 2194 820337759 820337299 1.270000e-75 294
7 TraesCS3B01G598600 chr3B 94.406 143 8 0 1532 1674 820162601 820162743 2.190000e-53 220
8 TraesCS3B01G598600 chr3B 92.908 141 8 1 4531 4671 820166217 820166355 2.200000e-48 204
9 TraesCS3B01G598600 chr3D 85.852 1138 135 12 56 1172 567668674 567669806 0.000000e+00 1186
10 TraesCS3B01G598600 chr3D 84.411 943 125 10 57 980 381006828 381007767 0.000000e+00 907
11 TraesCS3B01G598600 chr3D 84.893 887 110 13 57 922 350674230 350675113 0.000000e+00 874
12 TraesCS3B01G598600 chr3D 78.632 585 111 12 3025 3602 609290031 609289454 4.410000e-100 375
13 TraesCS3B01G598600 chr3D 76.000 275 56 8 2659 2928 609290473 609290204 2.930000e-27 134
14 TraesCS3B01G598600 chr5A 85.106 1175 146 19 58 1211 142745091 142746257 0.000000e+00 1173
15 TraesCS3B01G598600 chr3A 84.357 1189 157 15 57 1224 680984761 680983581 0.000000e+00 1138
16 TraesCS3B01G598600 chr3A 81.195 904 130 22 427 1298 588656382 588657277 0.000000e+00 691
17 TraesCS3B01G598600 chr1D 83.746 1212 158 23 58 1245 417912620 417913816 0.000000e+00 1110
18 TraesCS3B01G598600 chr4D 83.293 1227 168 20 57 1254 508963135 508964353 0.000000e+00 1096
19 TraesCS3B01G598600 chr4D 85.923 888 111 11 66 942 455264528 455263644 0.000000e+00 935
20 TraesCS3B01G598600 chr6D 84.452 1132 149 15 60 1169 80336367 80335241 0.000000e+00 1090
21 TraesCS3B01G598600 chr6D 87.556 667 81 2 55 720 362701430 362702095 0.000000e+00 771
22 TraesCS3B01G598600 chr2D 84.249 965 128 9 225 1169 471643821 471642861 0.000000e+00 918
23 TraesCS3B01G598600 chr2D 84.273 674 78 13 568 1218 392529140 392529808 2.370000e-177 632
24 TraesCS3B01G598600 chr7D 82.656 911 105 27 418 1297 136688143 136689031 0.000000e+00 758
25 TraesCS3B01G598600 chr7A 81.287 855 108 24 472 1303 225003824 225004649 0.000000e+00 645


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G598600 chr3B 820129589 820134259 4670 True 8626.0 8626 100.0000 1 4671 1 chr3B.!!$R2 4670
1 TraesCS3B01G598600 chr3B 820161922 820166355 4433 False 1271.6 4972 93.0188 838 4671 5 chr3B.!!$F1 3833
2 TraesCS3B01G598600 chr3B 252671286 252672444 1158 True 1110.0 1110 84.4040 103 1237 1 chr3B.!!$R1 1134
3 TraesCS3B01G598600 chr3B 820335935 820337759 1824 True 575.0 856 79.0305 1738 3587 2 chr3B.!!$R3 1849
4 TraesCS3B01G598600 chr3D 567668674 567669806 1132 False 1186.0 1186 85.8520 56 1172 1 chr3D.!!$F3 1116
5 TraesCS3B01G598600 chr3D 381006828 381007767 939 False 907.0 907 84.4110 57 980 1 chr3D.!!$F2 923
6 TraesCS3B01G598600 chr3D 350674230 350675113 883 False 874.0 874 84.8930 57 922 1 chr3D.!!$F1 865
7 TraesCS3B01G598600 chr3D 609289454 609290473 1019 True 254.5 375 77.3160 2659 3602 2 chr3D.!!$R1 943
8 TraesCS3B01G598600 chr5A 142745091 142746257 1166 False 1173.0 1173 85.1060 58 1211 1 chr5A.!!$F1 1153
9 TraesCS3B01G598600 chr3A 680983581 680984761 1180 True 1138.0 1138 84.3570 57 1224 1 chr3A.!!$R1 1167
10 TraesCS3B01G598600 chr3A 588656382 588657277 895 False 691.0 691 81.1950 427 1298 1 chr3A.!!$F1 871
11 TraesCS3B01G598600 chr1D 417912620 417913816 1196 False 1110.0 1110 83.7460 58 1245 1 chr1D.!!$F1 1187
12 TraesCS3B01G598600 chr4D 508963135 508964353 1218 False 1096.0 1096 83.2930 57 1254 1 chr4D.!!$F1 1197
13 TraesCS3B01G598600 chr4D 455263644 455264528 884 True 935.0 935 85.9230 66 942 1 chr4D.!!$R1 876
14 TraesCS3B01G598600 chr6D 80335241 80336367 1126 True 1090.0 1090 84.4520 60 1169 1 chr6D.!!$R1 1109
15 TraesCS3B01G598600 chr6D 362701430 362702095 665 False 771.0 771 87.5560 55 720 1 chr6D.!!$F1 665
16 TraesCS3B01G598600 chr2D 471642861 471643821 960 True 918.0 918 84.2490 225 1169 1 chr2D.!!$R1 944
17 TraesCS3B01G598600 chr2D 392529140 392529808 668 False 632.0 632 84.2730 568 1218 1 chr2D.!!$F1 650
18 TraesCS3B01G598600 chr7D 136688143 136689031 888 False 758.0 758 82.6560 418 1297 1 chr7D.!!$F1 879
19 TraesCS3B01G598600 chr7A 225003824 225004649 825 False 645.0 645 81.2870 472 1303 1 chr7A.!!$F1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 483 0.034896 ACACCAGACAACATCGTCCC 59.965 55.0 0.0 0.0 36.52 4.46 F
1214 1247 0.105913 GGAGGTGGAGGAGAGGGTAG 60.106 65.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 1893 0.181114 TGCAGGATATGTGGAGGCAC 59.819 55.000 0.00 0.00 0.0 5.01 R
4356 5105 3.244579 GCAAGTTAATTAGTACTCCGCGG 59.755 47.826 22.12 22.12 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.268920 GCGTTGGAGATGCCCTGA 59.731 61.111 0.00 0.00 34.03 3.86
18 19 1.377202 GCGTTGGAGATGCCCTGAA 60.377 57.895 0.00 0.00 34.03 3.02
19 20 1.372087 GCGTTGGAGATGCCCTGAAG 61.372 60.000 0.00 0.00 34.03 3.02
20 21 1.372087 CGTTGGAGATGCCCTGAAGC 61.372 60.000 0.00 0.00 34.97 3.86
21 22 1.034292 GTTGGAGATGCCCTGAAGCC 61.034 60.000 0.00 0.00 34.97 4.35
22 23 2.194326 GGAGATGCCCTGAAGCCC 59.806 66.667 0.00 0.00 0.00 5.19
23 24 2.381941 GGAGATGCCCTGAAGCCCT 61.382 63.158 0.00 0.00 0.00 5.19
24 25 1.611965 GAGATGCCCTGAAGCCCTT 59.388 57.895 0.00 0.00 0.00 3.95
25 26 0.750911 GAGATGCCCTGAAGCCCTTG 60.751 60.000 0.00 0.00 0.00 3.61
26 27 1.000396 GATGCCCTGAAGCCCTTGT 60.000 57.895 0.00 0.00 0.00 3.16
27 28 0.255890 GATGCCCTGAAGCCCTTGTA 59.744 55.000 0.00 0.00 0.00 2.41
28 29 0.929244 ATGCCCTGAAGCCCTTGTAT 59.071 50.000 0.00 0.00 0.00 2.29
29 30 0.704076 TGCCCTGAAGCCCTTGTATT 59.296 50.000 0.00 0.00 0.00 1.89
30 31 1.106285 GCCCTGAAGCCCTTGTATTG 58.894 55.000 0.00 0.00 0.00 1.90
31 32 1.340991 GCCCTGAAGCCCTTGTATTGA 60.341 52.381 0.00 0.00 0.00 2.57
32 33 2.648059 CCCTGAAGCCCTTGTATTGAG 58.352 52.381 0.00 0.00 0.00 3.02
33 34 2.019984 CCTGAAGCCCTTGTATTGAGC 58.980 52.381 0.00 0.00 0.00 4.26
34 35 2.019984 CTGAAGCCCTTGTATTGAGCC 58.980 52.381 0.00 0.00 0.00 4.70
35 36 1.354031 TGAAGCCCTTGTATTGAGCCA 59.646 47.619 0.00 0.00 0.00 4.75
36 37 2.224992 TGAAGCCCTTGTATTGAGCCAA 60.225 45.455 0.00 0.00 0.00 4.52
37 38 2.603075 AGCCCTTGTATTGAGCCAAA 57.397 45.000 0.00 0.00 0.00 3.28
38 39 2.171003 AGCCCTTGTATTGAGCCAAAC 58.829 47.619 0.00 0.00 0.00 2.93
39 40 1.892474 GCCCTTGTATTGAGCCAAACA 59.108 47.619 0.00 0.00 0.00 2.83
40 41 2.352715 GCCCTTGTATTGAGCCAAACAC 60.353 50.000 0.00 0.00 0.00 3.32
41 42 2.095263 CCCTTGTATTGAGCCAAACACG 60.095 50.000 0.00 0.00 0.00 4.49
42 43 2.552315 CCTTGTATTGAGCCAAACACGT 59.448 45.455 0.00 0.00 0.00 4.49
43 44 3.749088 CCTTGTATTGAGCCAAACACGTA 59.251 43.478 0.00 0.00 0.00 3.57
44 45 4.214545 CCTTGTATTGAGCCAAACACGTAA 59.785 41.667 0.00 0.00 0.00 3.18
45 46 5.106317 CCTTGTATTGAGCCAAACACGTAAT 60.106 40.000 0.00 0.00 0.00 1.89
46 47 5.289917 TGTATTGAGCCAAACACGTAATG 57.710 39.130 0.00 0.00 0.00 1.90
47 48 2.697431 TTGAGCCAAACACGTAATGC 57.303 45.000 0.00 0.00 0.00 3.56
48 49 1.598882 TGAGCCAAACACGTAATGCA 58.401 45.000 0.00 0.00 0.00 3.96
49 50 2.158559 TGAGCCAAACACGTAATGCAT 58.841 42.857 0.00 0.00 0.00 3.96
50 51 2.095314 TGAGCCAAACACGTAATGCATG 60.095 45.455 0.00 0.00 0.00 4.06
51 52 1.202114 AGCCAAACACGTAATGCATGG 59.798 47.619 0.00 0.00 39.36 3.66
52 53 1.735369 GCCAAACACGTAATGCATGGG 60.735 52.381 0.00 0.00 37.67 4.00
53 54 1.543802 CCAAACACGTAATGCATGGGT 59.456 47.619 0.00 0.00 34.92 4.51
100 102 2.758979 CCTTCAGCCTCTGCATTTGAAT 59.241 45.455 0.00 0.00 41.13 2.57
112 114 2.543848 GCATTTGAATGATGCATGCAGG 59.456 45.455 26.69 1.05 46.96 4.85
179 184 5.879223 CAGTAAGTCTGAAGCCATCATCTTT 59.121 40.000 10.54 1.78 46.27 2.52
203 208 4.462834 TCAACACCTGTCACTACTCCTATG 59.537 45.833 0.00 0.00 0.00 2.23
207 212 2.388735 CTGTCACTACTCCTATGCCCA 58.611 52.381 0.00 0.00 0.00 5.36
209 214 4.152647 CTGTCACTACTCCTATGCCCATA 58.847 47.826 0.00 0.00 0.00 2.74
233 239 2.046285 GGGTGCCAAATGTCCGAGG 61.046 63.158 0.00 0.00 0.00 4.63
247 253 3.008157 TGTCCGAGGCTAATACCAAACAA 59.992 43.478 0.00 0.00 0.00 2.83
276 282 3.717707 GCCAACGACTAGCATCTAATGA 58.282 45.455 0.00 0.00 0.00 2.57
383 389 3.003763 GGGCCGTCACCTCCTTCT 61.004 66.667 0.00 0.00 0.00 2.85
413 419 7.862675 TCGATCCATCCTTAGATCAGATACTA 58.137 38.462 0.00 0.00 39.09 1.82
434 440 2.046023 CATCGACCTTGCCAGGCA 60.046 61.111 11.22 11.22 45.56 4.75
460 466 1.447663 CATCGATGCCACCACGACA 60.448 57.895 13.37 0.00 38.79 4.35
477 483 0.034896 ACACCAGACAACATCGTCCC 59.965 55.000 0.00 0.00 36.52 4.46
479 485 0.836400 ACCAGACAACATCGTCCCCT 60.836 55.000 0.00 0.00 36.52 4.79
487 493 2.100631 CATCGTCCCCTTGCGTGAC 61.101 63.158 0.00 0.00 0.00 3.67
521 528 2.582498 GGACGCCGAATCTCCACG 60.582 66.667 0.00 0.00 0.00 4.94
559 566 1.664649 CGCCGCCATCGATGTGTAT 60.665 57.895 23.27 0.00 38.10 2.29
571 578 3.132824 TCGATGTGTATGATGAAGCACCT 59.867 43.478 0.00 0.00 0.00 4.00
604 611 4.204028 ACGCCCAACCACCAAGCT 62.204 61.111 0.00 0.00 0.00 3.74
605 612 2.912025 CGCCCAACCACCAAGCTT 60.912 61.111 0.00 0.00 0.00 3.74
625 632 0.689412 TCCACATATCCGTCCAGCCA 60.689 55.000 0.00 0.00 0.00 4.75
626 633 0.532862 CCACATATCCGTCCAGCCAC 60.533 60.000 0.00 0.00 0.00 5.01
696 703 1.345741 GCCATCATTCGATCCAGGAGA 59.654 52.381 0.00 0.00 0.00 3.71
749 773 1.139853 CAATGGTAGCCTCCTCCAGAC 59.860 57.143 0.00 0.00 34.62 3.51
777 802 4.274978 GTTTCCCCCGAAAATAATGGAGA 58.725 43.478 0.00 0.00 39.66 3.71
824 853 2.091102 GAGGAAACGACACCCACGGA 62.091 60.000 0.00 0.00 34.93 4.69
843 872 2.903855 GCTGCCGATGATGGTGGG 60.904 66.667 0.00 0.00 0.00 4.61
852 881 0.761187 ATGATGGTGGGATCCTCACG 59.239 55.000 20.46 0.00 36.09 4.35
876 905 4.039245 CACTTTAGCAGCTAGGCCACTATA 59.961 45.833 5.01 0.00 0.00 1.31
885 914 3.309556 GCTAGGCCACTATATCCTCCTCT 60.310 52.174 5.01 0.00 0.00 3.69
1032 1065 3.322466 CTCGTCCCAAGGTGCCCT 61.322 66.667 0.00 0.00 33.87 5.19
1183 1216 1.694169 GAGGAGATTGGGAGGGGCA 60.694 63.158 0.00 0.00 0.00 5.36
1210 1243 2.443016 CGGGAGGTGGAGGAGAGG 60.443 72.222 0.00 0.00 0.00 3.69
1211 1244 2.041405 GGGAGGTGGAGGAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
1212 1245 2.781406 GGAGGTGGAGGAGAGGGT 59.219 66.667 0.00 0.00 0.00 4.34
1213 1246 1.591280 GGGAGGTGGAGGAGAGGGTA 61.591 65.000 0.00 0.00 0.00 3.69
1214 1247 0.105913 GGAGGTGGAGGAGAGGGTAG 60.106 65.000 0.00 0.00 0.00 3.18
1215 1248 0.105913 GAGGTGGAGGAGAGGGTAGG 60.106 65.000 0.00 0.00 0.00 3.18
1216 1249 1.762858 GGTGGAGGAGAGGGTAGGC 60.763 68.421 0.00 0.00 0.00 3.93
1217 1250 2.128507 GTGGAGGAGAGGGTAGGCG 61.129 68.421 0.00 0.00 0.00 5.52
1218 1251 2.314215 TGGAGGAGAGGGTAGGCGA 61.314 63.158 0.00 0.00 0.00 5.54
1219 1252 1.076192 GGAGGAGAGGGTAGGCGAA 60.076 63.158 0.00 0.00 0.00 4.70
1220 1253 1.393487 GGAGGAGAGGGTAGGCGAAC 61.393 65.000 0.00 0.00 0.00 3.95
1221 1254 0.396001 GAGGAGAGGGTAGGCGAACT 60.396 60.000 0.00 0.00 0.00 3.01
1222 1255 0.684805 AGGAGAGGGTAGGCGAACTG 60.685 60.000 0.00 0.00 0.00 3.16
1223 1256 0.683504 GGAGAGGGTAGGCGAACTGA 60.684 60.000 0.00 0.00 0.00 3.41
1224 1257 0.741915 GAGAGGGTAGGCGAACTGAG 59.258 60.000 0.00 0.00 0.00 3.35
1225 1258 0.684805 AGAGGGTAGGCGAACTGAGG 60.685 60.000 0.00 0.00 0.00 3.86
1296 1383 4.916314 GGATCGGGAGGCGGAGGA 62.916 72.222 0.00 0.00 0.00 3.71
1297 1384 3.299190 GATCGGGAGGCGGAGGAG 61.299 72.222 0.00 0.00 0.00 3.69
1298 1385 3.793957 GATCGGGAGGCGGAGGAGA 62.794 68.421 0.00 0.00 0.00 3.71
1299 1386 3.153629 ATCGGGAGGCGGAGGAGAT 62.154 63.158 0.00 0.00 0.00 2.75
1300 1387 3.299190 CGGGAGGCGGAGGAGATC 61.299 72.222 0.00 0.00 0.00 2.75
1301 1388 3.299190 GGGAGGCGGAGGAGATCG 61.299 72.222 0.00 0.00 0.00 3.69
1302 1389 2.519780 GGAGGCGGAGGAGATCGT 60.520 66.667 0.00 0.00 0.00 3.73
1338 1447 0.819259 CGGGGTCACCTAATGCATGG 60.819 60.000 0.00 0.00 36.97 3.66
1345 1454 3.068590 GTCACCTAATGCATGGGAAATGG 59.931 47.826 21.26 9.61 0.00 3.16
1351 1460 1.754234 GCATGGGAAATGGCCGAGT 60.754 57.895 0.00 0.00 0.00 4.18
1366 1475 2.605366 GCCGAGTAGCTTTGACATTCTC 59.395 50.000 0.00 0.00 0.00 2.87
1372 1481 6.034470 CGAGTAGCTTTGACATTCTCTCTTTC 59.966 42.308 0.00 0.00 0.00 2.62
1406 1515 3.091545 GGGTCCTGCATGAAATTCTTCA 58.908 45.455 0.00 0.00 45.53 3.02
1462 1571 3.408634 ACTTATGTTGTTGGAACCTCCG 58.591 45.455 0.00 0.00 40.17 4.63
1481 1590 3.388676 TCCGTCCTTGAGTTAGTTTGGAA 59.611 43.478 0.00 0.00 0.00 3.53
1482 1591 4.131596 CCGTCCTTGAGTTAGTTTGGAAA 58.868 43.478 0.00 0.00 0.00 3.13
1483 1592 4.760204 CCGTCCTTGAGTTAGTTTGGAAAT 59.240 41.667 0.00 0.00 0.00 2.17
1499 1608 6.464895 TTGGAAATCATTGCGTCAATTTTC 57.535 33.333 14.58 14.58 33.44 2.29
1569 1726 9.982291 TTGATAAAACAACTTGCGATATAGAAC 57.018 29.630 0.00 0.00 0.00 3.01
1592 1749 6.162079 ACGAGGAATTATGATGATGCTACAG 58.838 40.000 0.00 0.00 0.00 2.74
1595 1752 5.938710 AGGAATTATGATGATGCTACAGCTG 59.061 40.000 13.48 13.48 42.66 4.24
1602 1759 3.583054 ATGCTACAGCTGGCATGTT 57.417 47.368 24.18 6.67 45.81 2.71
1629 1786 6.127793 AGTCGTATACCTTTATGTCAGAGGT 58.872 40.000 9.51 9.51 45.38 3.85
1640 1797 0.608640 GTCAGAGGTGGGTCAATCGT 59.391 55.000 0.00 0.00 0.00 3.73
1654 1811 3.679980 GTCAATCGTCCCATATCGAATGG 59.320 47.826 15.60 15.60 37.50 3.16
1671 1828 7.786178 TCGAATGGTAAACTAATGATTGAGG 57.214 36.000 0.00 0.00 0.00 3.86
1672 1829 7.335627 TCGAATGGTAAACTAATGATTGAGGT 58.664 34.615 0.00 0.00 0.00 3.85
1673 1830 8.479689 TCGAATGGTAAACTAATGATTGAGGTA 58.520 33.333 0.00 0.00 0.00 3.08
1674 1831 8.765219 CGAATGGTAAACTAATGATTGAGGTAG 58.235 37.037 0.00 0.00 0.00 3.18
1675 1832 9.614792 GAATGGTAAACTAATGATTGAGGTAGT 57.385 33.333 0.00 0.00 0.00 2.73
1678 1835 9.263446 TGGTAAACTAATGATTGAGGTAGTAGT 57.737 33.333 0.00 0.00 0.00 2.73
1683 1840 9.476928 AACTAATGATTGAGGTAGTAGTACTGT 57.523 33.333 13.29 0.00 0.00 3.55
1686 1843 8.818622 AATGATTGAGGTAGTAGTACTGTACA 57.181 34.615 19.27 0.00 0.00 2.90
1687 1844 8.998277 ATGATTGAGGTAGTAGTACTGTACAT 57.002 34.615 19.27 4.89 0.00 2.29
1688 1845 8.818622 TGATTGAGGTAGTAGTACTGTACATT 57.181 34.615 19.27 7.29 0.00 2.71
1689 1846 9.910267 TGATTGAGGTAGTAGTACTGTACATTA 57.090 33.333 19.27 6.41 0.00 1.90
1699 1856 8.419442 AGTAGTACTGTACATTATTAACTGCCC 58.581 37.037 19.27 0.00 0.00 5.36
1700 1857 6.278363 AGTACTGTACATTATTAACTGCCCG 58.722 40.000 19.27 0.00 0.00 6.13
1701 1858 3.875134 ACTGTACATTATTAACTGCCCGC 59.125 43.478 0.00 0.00 0.00 6.13
1702 1859 4.127171 CTGTACATTATTAACTGCCCGCT 58.873 43.478 0.00 0.00 0.00 5.52
1703 1860 3.874543 TGTACATTATTAACTGCCCGCTG 59.125 43.478 0.00 0.00 0.00 5.18
1704 1861 1.676006 ACATTATTAACTGCCCGCTGC 59.324 47.619 0.00 0.00 41.77 5.25
1705 1862 1.949525 CATTATTAACTGCCCGCTGCT 59.050 47.619 0.00 0.00 42.00 4.24
1706 1863 2.122783 TTATTAACTGCCCGCTGCTT 57.877 45.000 0.00 0.00 42.00 3.91
1712 1869 2.359850 TGCCCGCTGCTTTAGGTG 60.360 61.111 0.00 0.00 42.00 4.00
1715 1872 2.401766 CCCGCTGCTTTAGGTGCTG 61.402 63.158 0.00 0.00 0.00 4.41
4306 5055 6.594159 CCCTCTGTATCAAAATGTAAAGACGT 59.406 38.462 0.00 0.00 0.00 4.34
4320 5069 9.575783 AATGTAAAGACGTTTTCTGCTTTTAAA 57.424 25.926 3.39 0.00 33.46 1.52
4322 5071 8.021973 TGTAAAGACGTTTTCTGCTTTTAAACA 58.978 29.630 3.39 0.67 33.46 2.83
4356 5105 2.847254 GCATTTTGATACAGAGTCGCGC 60.847 50.000 0.00 0.00 0.00 6.86
4384 5133 6.537301 CGGAGTACTAATTAACTTGCCATCAA 59.463 38.462 0.00 0.00 0.00 2.57
4402 5151 5.463061 CCATCAAATGATACGGCCAAATTTC 59.537 40.000 2.24 0.00 32.63 2.17
4404 5153 5.649557 TCAAATGATACGGCCAAATTTCAG 58.350 37.500 2.24 0.00 0.00 3.02
4413 5162 1.338105 GCCAAATTTCAGTGAAGGGGC 60.338 52.381 17.59 17.59 0.00 5.80
4425 5174 3.773119 AGTGAAGGGGCGAAGTAATCTTA 59.227 43.478 0.00 0.00 33.64 2.10
4466 5215 9.897744 GCTGCATATATAATAAGCACTTTTTCA 57.102 29.630 0.00 0.00 0.00 2.69
4488 5238 5.070001 CAGGACCAAGGTTTAACTGAATCA 58.930 41.667 0.00 0.00 0.00 2.57
4494 5244 6.379988 ACCAAGGTTTAACTGAATCAAACTGT 59.620 34.615 0.00 0.00 33.62 3.55
4497 5247 8.621286 CAAGGTTTAACTGAATCAAACTGTACT 58.379 33.333 0.00 0.00 33.62 2.73
4498 5248 9.841295 AAGGTTTAACTGAATCAAACTGTACTA 57.159 29.630 0.00 0.00 33.62 1.82
4499 5249 9.490379 AGGTTTAACTGAATCAAACTGTACTAG 57.510 33.333 0.00 0.00 33.62 2.57
4500 5250 8.228464 GGTTTAACTGAATCAAACTGTACTAGC 58.772 37.037 0.00 0.00 33.62 3.42
4501 5251 7.576750 TTAACTGAATCAAACTGTACTAGCG 57.423 36.000 0.00 0.00 0.00 4.26
4502 5252 5.135508 ACTGAATCAAACTGTACTAGCGT 57.864 39.130 0.00 0.00 0.00 5.07
4503 5253 5.162075 ACTGAATCAAACTGTACTAGCGTC 58.838 41.667 0.00 0.00 0.00 5.19
4510 5354 1.842562 ACTGTACTAGCGTCCCTCCTA 59.157 52.381 0.00 0.00 0.00 2.94
4515 5359 0.106619 CTAGCGTCCCTCCTACCAGT 60.107 60.000 0.00 0.00 0.00 4.00
4518 5362 1.188863 GCGTCCCTCCTACCAGTAAA 58.811 55.000 0.00 0.00 0.00 2.01
4521 5365 3.385755 GCGTCCCTCCTACCAGTAAATAA 59.614 47.826 0.00 0.00 0.00 1.40
4525 5369 5.814188 GTCCCTCCTACCAGTAAATAAAACG 59.186 44.000 0.00 0.00 0.00 3.60
4554 5485 1.614413 CTCCTGGACCGCCTAGTAATC 59.386 57.143 0.00 0.00 34.31 1.75
4563 5494 1.763634 GCCTAGTAATCGCGGTACAC 58.236 55.000 18.79 9.27 0.00 2.90
4579 5510 2.335316 ACACGCCACCTTGTCTTTTA 57.665 45.000 0.00 0.00 0.00 1.52
4592 5523 2.158534 TGTCTTTTACATGCCCCACTGT 60.159 45.455 0.00 0.00 31.43 3.55
4598 5529 1.000521 CATGCCCCACTGTCACCAT 60.001 57.895 0.00 0.00 0.00 3.55
4632 5563 1.507141 AAGTTTGCCGGCTTCTGACG 61.507 55.000 29.70 0.00 45.91 4.35
4648 5579 3.770040 CGGAGGTGGGCGTGATGA 61.770 66.667 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.372087 CTTCAGGGCATCTCCAACGC 61.372 60.000 0.00 0.00 36.21 4.84
1 2 1.372087 GCTTCAGGGCATCTCCAACG 61.372 60.000 0.00 0.00 36.21 4.10
2 3 1.034292 GGCTTCAGGGCATCTCCAAC 61.034 60.000 0.00 0.00 40.53 3.77
3 4 1.304282 GGCTTCAGGGCATCTCCAA 59.696 57.895 0.00 0.00 40.53 3.53
4 5 2.683465 GGGCTTCAGGGCATCTCCA 61.683 63.158 0.00 0.00 42.84 3.86
6 7 0.750911 CAAGGGCTTCAGGGCATCTC 60.751 60.000 0.00 0.00 42.84 2.75
7 8 1.305623 CAAGGGCTTCAGGGCATCT 59.694 57.895 0.00 0.00 42.84 2.90
8 9 0.255890 TACAAGGGCTTCAGGGCATC 59.744 55.000 0.00 0.00 42.84 3.91
9 10 0.929244 ATACAAGGGCTTCAGGGCAT 59.071 50.000 0.00 0.00 42.84 4.40
10 11 0.704076 AATACAAGGGCTTCAGGGCA 59.296 50.000 0.00 0.00 42.84 5.36
11 12 1.106285 CAATACAAGGGCTTCAGGGC 58.894 55.000 0.00 0.00 40.05 5.19
12 13 2.648059 CTCAATACAAGGGCTTCAGGG 58.352 52.381 0.00 0.00 0.00 4.45
13 14 2.019984 GCTCAATACAAGGGCTTCAGG 58.980 52.381 0.00 0.00 0.00 3.86
14 15 2.019984 GGCTCAATACAAGGGCTTCAG 58.980 52.381 0.00 0.00 0.00 3.02
15 16 1.354031 TGGCTCAATACAAGGGCTTCA 59.646 47.619 0.00 0.00 0.00 3.02
16 17 2.128771 TGGCTCAATACAAGGGCTTC 57.871 50.000 0.00 0.00 0.00 3.86
17 18 2.562738 GTTTGGCTCAATACAAGGGCTT 59.437 45.455 0.00 0.00 0.00 4.35
18 19 2.171003 GTTTGGCTCAATACAAGGGCT 58.829 47.619 0.00 0.00 0.00 5.19
19 20 1.892474 TGTTTGGCTCAATACAAGGGC 59.108 47.619 0.00 0.00 0.00 5.19
20 21 2.095263 CGTGTTTGGCTCAATACAAGGG 60.095 50.000 0.00 0.00 0.00 3.95
21 22 2.552315 ACGTGTTTGGCTCAATACAAGG 59.448 45.455 0.00 8.81 0.00 3.61
22 23 3.896648 ACGTGTTTGGCTCAATACAAG 57.103 42.857 0.00 0.00 0.00 3.16
23 24 5.694816 CATTACGTGTTTGGCTCAATACAA 58.305 37.500 0.00 0.00 0.00 2.41
24 25 4.378978 GCATTACGTGTTTGGCTCAATACA 60.379 41.667 0.00 0.00 0.00 2.29
25 26 4.095610 GCATTACGTGTTTGGCTCAATAC 58.904 43.478 0.00 0.00 0.00 1.89
26 27 3.753797 TGCATTACGTGTTTGGCTCAATA 59.246 39.130 0.00 0.00 0.00 1.90
27 28 2.556189 TGCATTACGTGTTTGGCTCAAT 59.444 40.909 0.00 0.00 0.00 2.57
28 29 1.950216 TGCATTACGTGTTTGGCTCAA 59.050 42.857 0.00 0.00 0.00 3.02
29 30 1.598882 TGCATTACGTGTTTGGCTCA 58.401 45.000 0.00 0.00 0.00 4.26
30 31 2.518949 CATGCATTACGTGTTTGGCTC 58.481 47.619 0.00 0.00 0.00 4.70
31 32 1.202114 CCATGCATTACGTGTTTGGCT 59.798 47.619 0.00 0.00 33.01 4.75
32 33 1.627879 CCATGCATTACGTGTTTGGC 58.372 50.000 0.00 0.00 33.01 4.52
33 34 1.543802 ACCCATGCATTACGTGTTTGG 59.456 47.619 0.00 0.00 33.01 3.28
34 35 3.296322 AACCCATGCATTACGTGTTTG 57.704 42.857 0.00 0.00 33.01 2.93
35 36 4.329462 AAAACCCATGCATTACGTGTTT 57.671 36.364 0.00 0.00 33.01 2.83
36 37 4.329462 AAAAACCCATGCATTACGTGTT 57.671 36.364 0.00 0.00 33.01 3.32
73 75 1.630369 TGCAGAGGCTGAAGGTACATT 59.370 47.619 0.00 0.00 41.91 2.71
179 184 3.305720 AGGAGTAGTGACAGGTGTTGAA 58.694 45.455 0.00 0.00 0.00 2.69
207 212 3.706086 GGACATTTGGCACCCTTCATTAT 59.294 43.478 0.00 0.00 0.00 1.28
209 214 1.901833 GGACATTTGGCACCCTTCATT 59.098 47.619 0.00 0.00 0.00 2.57
233 239 3.783943 CGCGATGTTTGTTTGGTATTAGC 59.216 43.478 0.00 0.00 0.00 3.09
247 253 1.076533 CTAGTCGTTGGCGCGATGTT 61.077 55.000 12.10 0.73 43.07 2.71
276 282 0.757935 GCTTGGATGGGGCATCACAT 60.758 55.000 0.00 0.00 42.13 3.21
279 285 2.279743 GGCTTGGATGGGGCATCA 59.720 61.111 0.00 0.00 42.13 3.07
365 371 3.319198 GAAGGAGGTGACGGCCCA 61.319 66.667 0.00 0.00 0.00 5.36
383 389 5.086621 TGATCTAAGGATGGATCGATGGAA 58.913 41.667 0.54 0.00 44.21 3.53
413 419 2.031919 TGGCAAGGTCGATGCGTT 59.968 55.556 3.56 0.00 44.75 4.84
460 466 0.836400 AGGGGACGATGTTGTCTGGT 60.836 55.000 0.00 0.00 38.91 4.00
477 483 2.460330 GTGATGGAGTCACGCAAGG 58.540 57.895 0.00 0.00 46.99 3.61
487 493 1.146930 CCGATGGGTGGTGATGGAG 59.853 63.158 0.00 0.00 0.00 3.86
559 566 0.615331 GGTGGAGAGGTGCTTCATCA 59.385 55.000 0.00 0.00 33.04 3.07
571 578 1.676635 CGTCGGTAGGTGGTGGAGA 60.677 63.158 0.00 0.00 0.00 3.71
604 611 1.134220 GGCTGGACGGATATGTGGAAA 60.134 52.381 0.00 0.00 0.00 3.13
605 612 0.468226 GGCTGGACGGATATGTGGAA 59.532 55.000 0.00 0.00 0.00 3.53
625 632 5.125097 GGCATCATCTTTCAAGACATTCAGT 59.875 40.000 0.00 0.00 37.98 3.41
626 633 5.450137 GGGCATCATCTTTCAAGACATTCAG 60.450 44.000 0.00 0.00 37.98 3.02
696 703 2.852075 TTGGAGGCGTTGAGGGGT 60.852 61.111 0.00 0.00 0.00 4.95
824 853 2.512286 CACCATCATCGGCAGCGT 60.512 61.111 0.00 0.00 0.00 5.07
828 857 1.451504 GATCCCACCATCATCGGCA 59.548 57.895 0.00 0.00 0.00 5.69
843 872 1.929836 CTGCTAAAGTGCGTGAGGATC 59.070 52.381 0.00 0.00 35.36 3.36
852 881 0.392998 TGGCCTAGCTGCTAAAGTGC 60.393 55.000 11.02 10.45 0.00 4.40
876 905 2.243810 GCGGATCAACTAGAGGAGGAT 58.756 52.381 0.00 0.00 0.00 3.24
885 914 4.215742 CCGGCGGCGGATCAACTA 62.216 66.667 44.11 0.00 0.00 2.24
1032 1065 1.546029 CTGTGACGGTGGATCTTGAGA 59.454 52.381 0.00 0.00 0.00 3.27
1192 1225 2.443016 CTCTCCTCCACCTCCCGG 60.443 72.222 0.00 0.00 0.00 5.73
1193 1226 2.443016 CCTCTCCTCCACCTCCCG 60.443 72.222 0.00 0.00 0.00 5.14
1194 1227 1.591280 TACCCTCTCCTCCACCTCCC 61.591 65.000 0.00 0.00 0.00 4.30
1195 1228 0.105913 CTACCCTCTCCTCCACCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1196 1229 0.105913 CCTACCCTCTCCTCCACCTC 60.106 65.000 0.00 0.00 0.00 3.85
1197 1230 2.020137 CCTACCCTCTCCTCCACCT 58.980 63.158 0.00 0.00 0.00 4.00
1198 1231 1.762858 GCCTACCCTCTCCTCCACC 60.763 68.421 0.00 0.00 0.00 4.61
1199 1232 2.128507 CGCCTACCCTCTCCTCCAC 61.129 68.421 0.00 0.00 0.00 4.02
1200 1233 1.870941 TTCGCCTACCCTCTCCTCCA 61.871 60.000 0.00 0.00 0.00 3.86
1201 1234 1.076192 TTCGCCTACCCTCTCCTCC 60.076 63.158 0.00 0.00 0.00 4.30
1202 1235 0.396001 AGTTCGCCTACCCTCTCCTC 60.396 60.000 0.00 0.00 0.00 3.71
1203 1236 0.684805 CAGTTCGCCTACCCTCTCCT 60.685 60.000 0.00 0.00 0.00 3.69
1204 1237 0.683504 TCAGTTCGCCTACCCTCTCC 60.684 60.000 0.00 0.00 0.00 3.71
1205 1238 0.741915 CTCAGTTCGCCTACCCTCTC 59.258 60.000 0.00 0.00 0.00 3.20
1206 1239 0.684805 CCTCAGTTCGCCTACCCTCT 60.685 60.000 0.00 0.00 0.00 3.69
1207 1240 1.677637 CCCTCAGTTCGCCTACCCTC 61.678 65.000 0.00 0.00 0.00 4.30
1208 1241 1.686110 CCCTCAGTTCGCCTACCCT 60.686 63.158 0.00 0.00 0.00 4.34
1209 1242 2.732619 CCCCTCAGTTCGCCTACCC 61.733 68.421 0.00 0.00 0.00 3.69
1210 1243 2.901042 CCCCTCAGTTCGCCTACC 59.099 66.667 0.00 0.00 0.00 3.18
1211 1244 2.187163 GCCCCTCAGTTCGCCTAC 59.813 66.667 0.00 0.00 0.00 3.18
1212 1245 3.458163 CGCCCCTCAGTTCGCCTA 61.458 66.667 0.00 0.00 0.00 3.93
1215 1248 4.821589 CTCCGCCCCTCAGTTCGC 62.822 72.222 0.00 0.00 0.00 4.70
1216 1249 4.148825 CCTCCGCCCCTCAGTTCG 62.149 72.222 0.00 0.00 0.00 3.95
1217 1250 3.787001 CCCTCCGCCCCTCAGTTC 61.787 72.222 0.00 0.00 0.00 3.01
1220 1253 4.888325 ATCCCCTCCGCCCCTCAG 62.888 72.222 0.00 0.00 0.00 3.35
1221 1254 4.880426 GATCCCCTCCGCCCCTCA 62.880 72.222 0.00 0.00 0.00 3.86
1286 1373 1.791103 CTCACGATCTCCTCCGCCTC 61.791 65.000 0.00 0.00 0.00 4.70
1287 1374 1.826054 CTCACGATCTCCTCCGCCT 60.826 63.158 0.00 0.00 0.00 5.52
1288 1375 2.725008 CTCACGATCTCCTCCGCC 59.275 66.667 0.00 0.00 0.00 6.13
1289 1376 2.725008 CCTCACGATCTCCTCCGC 59.275 66.667 0.00 0.00 0.00 5.54
1290 1377 2.196925 CCCCTCACGATCTCCTCCG 61.197 68.421 0.00 0.00 0.00 4.63
1291 1378 2.503382 GCCCCTCACGATCTCCTCC 61.503 68.421 0.00 0.00 0.00 4.30
1292 1379 2.851071 CGCCCCTCACGATCTCCTC 61.851 68.421 0.00 0.00 0.00 3.71
1293 1380 2.835431 CGCCCCTCACGATCTCCT 60.835 66.667 0.00 0.00 0.00 3.69
1294 1381 3.917760 CCGCCCCTCACGATCTCC 61.918 72.222 0.00 0.00 0.00 3.71
1295 1382 2.833582 TCCGCCCCTCACGATCTC 60.834 66.667 0.00 0.00 0.00 2.75
1296 1383 2.835431 CTCCGCCCCTCACGATCT 60.835 66.667 0.00 0.00 0.00 2.75
1297 1384 3.917760 CCTCCGCCCCTCACGATC 61.918 72.222 0.00 0.00 0.00 3.69
1302 1389 4.880426 GATCCCCTCCGCCCCTCA 62.880 72.222 0.00 0.00 0.00 3.86
1338 1447 1.401905 CAAAGCTACTCGGCCATTTCC 59.598 52.381 2.24 0.00 0.00 3.13
1345 1454 2.605366 GAGAATGTCAAAGCTACTCGGC 59.395 50.000 0.00 0.00 0.00 5.54
1351 1460 8.128322 AGTAGAAAGAGAGAATGTCAAAGCTA 57.872 34.615 0.00 0.00 0.00 3.32
1366 1475 7.982354 CAGGACCCAAACTATTAGTAGAAAGAG 59.018 40.741 0.00 0.00 0.00 2.85
1372 1481 5.353394 TGCAGGACCCAAACTATTAGTAG 57.647 43.478 0.00 0.00 0.00 2.57
1406 1515 0.971386 CCTAATGCCGGGGTACGTAT 59.029 55.000 2.18 0.00 42.24 3.06
1462 1571 6.877611 TGATTTCCAAACTAACTCAAGGAC 57.122 37.500 0.00 0.00 0.00 3.85
1481 1590 5.984926 AGTTGTGAAAATTGACGCAATGATT 59.015 32.000 12.07 5.21 38.45 2.57
1482 1591 5.531634 AGTTGTGAAAATTGACGCAATGAT 58.468 33.333 12.07 0.00 38.45 2.45
1483 1592 4.930963 AGTTGTGAAAATTGACGCAATGA 58.069 34.783 12.07 0.00 38.45 2.57
1499 1608 3.546020 CGAAAGTAGTGCACCAAGTTGTG 60.546 47.826 14.63 4.31 39.29 3.33
1569 1726 5.063186 GCTGTAGCATCATCATAATTCCTCG 59.937 44.000 0.00 0.00 41.59 4.63
1592 1749 2.004583 TACGACTACAACATGCCAGC 57.995 50.000 0.00 0.00 0.00 4.85
1595 1752 4.317671 AGGTATACGACTACAACATGCC 57.682 45.455 0.00 0.00 0.00 4.40
1602 1759 7.228108 CCTCTGACATAAAGGTATACGACTACA 59.772 40.741 0.00 0.00 0.00 2.74
1640 1797 7.969004 TCATTAGTTTACCATTCGATATGGGA 58.031 34.615 22.38 15.69 43.32 4.37
1673 1830 8.419442 GGGCAGTTAATAATGTACAGTACTACT 58.581 37.037 12.07 6.59 0.00 2.57
1674 1831 7.380602 CGGGCAGTTAATAATGTACAGTACTAC 59.619 40.741 12.07 4.48 0.00 2.73
1675 1832 7.428020 CGGGCAGTTAATAATGTACAGTACTA 58.572 38.462 12.07 0.00 0.00 1.82
1676 1833 6.278363 CGGGCAGTTAATAATGTACAGTACT 58.722 40.000 12.07 0.00 0.00 2.73
1677 1834 5.050567 GCGGGCAGTTAATAATGTACAGTAC 60.051 44.000 4.96 3.49 0.00 2.73
1678 1835 5.051816 GCGGGCAGTTAATAATGTACAGTA 58.948 41.667 5.37 5.37 0.00 2.74
1679 1836 3.875134 GCGGGCAGTTAATAATGTACAGT 59.125 43.478 0.33 0.07 0.00 3.55
1680 1837 4.024893 CAGCGGGCAGTTAATAATGTACAG 60.025 45.833 0.33 0.00 0.00 2.74
1681 1838 3.874543 CAGCGGGCAGTTAATAATGTACA 59.125 43.478 0.00 0.00 0.00 2.90
1682 1839 3.303791 GCAGCGGGCAGTTAATAATGTAC 60.304 47.826 0.00 0.00 43.97 2.90
1683 1840 2.875933 GCAGCGGGCAGTTAATAATGTA 59.124 45.455 0.00 0.00 43.97 2.29
1684 1841 1.676006 GCAGCGGGCAGTTAATAATGT 59.324 47.619 0.00 0.00 43.97 2.71
1685 1842 2.405892 GCAGCGGGCAGTTAATAATG 57.594 50.000 0.00 0.00 43.97 1.90
1696 1853 3.815396 GCACCTAAAGCAGCGGGC 61.815 66.667 0.00 0.00 45.30 6.13
1697 1854 2.045926 AGCACCTAAAGCAGCGGG 60.046 61.111 0.00 0.00 0.00 6.13
1698 1855 2.401766 CCAGCACCTAAAGCAGCGG 61.402 63.158 0.00 0.00 0.00 5.52
1699 1856 1.237285 AACCAGCACCTAAAGCAGCG 61.237 55.000 0.00 0.00 0.00 5.18
1700 1857 0.961753 AAACCAGCACCTAAAGCAGC 59.038 50.000 0.00 0.00 0.00 5.25
1701 1858 3.733443 AAAAACCAGCACCTAAAGCAG 57.267 42.857 0.00 0.00 0.00 4.24
1734 1891 1.135094 CAGGATATGTGGAGGCACCT 58.865 55.000 1.84 0.00 39.86 4.00
1736 1893 0.181114 TGCAGGATATGTGGAGGCAC 59.819 55.000 0.00 0.00 0.00 5.01
4356 5105 3.244579 GCAAGTTAATTAGTACTCCGCGG 59.755 47.826 22.12 22.12 0.00 6.46
4367 5116 8.349245 CCGTATCATTTGATGGCAAGTTAATTA 58.651 33.333 3.30 0.00 36.05 1.40
4384 5133 4.704540 TCACTGAAATTTGGCCGTATCATT 59.295 37.500 0.00 0.00 0.00 2.57
4402 5151 2.093447 AGATTACTTCGCCCCTTCACTG 60.093 50.000 0.00 0.00 0.00 3.66
4404 5153 2.693267 AGATTACTTCGCCCCTTCAC 57.307 50.000 0.00 0.00 0.00 3.18
4425 5174 3.981071 TGCAGCTTTACTACTGTCCAT 57.019 42.857 0.00 0.00 36.26 3.41
4462 5211 5.118729 TCAGTTAAACCTTGGTCCTGAAA 57.881 39.130 0.00 0.00 0.00 2.69
4466 5215 5.319043 TGATTCAGTTAAACCTTGGTCCT 57.681 39.130 0.00 0.00 0.00 3.85
4488 5238 1.823610 GGAGGGACGCTAGTACAGTTT 59.176 52.381 0.00 0.00 31.06 2.66
4494 5244 1.142465 CTGGTAGGAGGGACGCTAGTA 59.858 57.143 0.00 0.00 0.00 1.82
4497 5247 1.216064 TACTGGTAGGAGGGACGCTA 58.784 55.000 0.00 0.00 0.00 4.26
4498 5248 0.333993 TTACTGGTAGGAGGGACGCT 59.666 55.000 0.00 0.00 0.00 5.07
4499 5249 1.188863 TTTACTGGTAGGAGGGACGC 58.811 55.000 0.00 0.00 0.00 5.19
4500 5250 5.603170 TTTATTTACTGGTAGGAGGGACG 57.397 43.478 0.00 0.00 0.00 4.79
4501 5251 5.814188 CGTTTTATTTACTGGTAGGAGGGAC 59.186 44.000 0.00 0.00 0.00 4.46
4502 5252 5.721000 TCGTTTTATTTACTGGTAGGAGGGA 59.279 40.000 0.00 0.00 0.00 4.20
4503 5253 5.814188 GTCGTTTTATTTACTGGTAGGAGGG 59.186 44.000 0.00 0.00 0.00 4.30
4510 5354 4.612033 GCGCAAGTCGTTTTATTTACTGGT 60.612 41.667 0.30 0.00 41.07 4.00
4563 5494 2.668279 GCATGTAAAAGACAAGGTGGCG 60.668 50.000 0.00 0.00 42.78 5.69
4579 5510 2.436109 GGTGACAGTGGGGCATGT 59.564 61.111 0.00 0.00 0.00 3.21
4592 5523 2.769095 TGATGGTGGATCGTTATGGTGA 59.231 45.455 0.00 0.00 33.17 4.02
4598 5529 3.438781 GCAAACTTGATGGTGGATCGTTA 59.561 43.478 0.00 0.00 33.17 3.18
4632 5563 2.125106 GTCATCACGCCCACCTCC 60.125 66.667 0.00 0.00 0.00 4.30
4633 5564 2.125106 GGTCATCACGCCCACCTC 60.125 66.667 0.00 0.00 0.00 3.85
4634 5565 3.717294 GGGTCATCACGCCCACCT 61.717 66.667 0.00 0.00 44.23 4.00
4648 5579 0.251165 GTACAACATGTGCAGGGGGT 60.251 55.000 0.00 0.00 33.03 4.95
4651 5582 1.603456 TGTGTACAACATGTGCAGGG 58.397 50.000 0.00 0.00 43.36 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.