Multiple sequence alignment - TraesCS3B01G597300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G597300 chr3B 100.000 2514 0 0 1 2514 819752035 819749522 0.000000e+00 4643.0
1 TraesCS3B01G597300 chr3B 80.376 372 56 11 49 417 776098681 776098324 1.480000e-67 267.0
2 TraesCS3B01G597300 chr3D 89.050 968 69 20 827 1763 609025229 609024268 0.000000e+00 1166.0
3 TraesCS3B01G597300 chr3D 85.514 428 54 5 1 421 609026184 609025758 8.250000e-120 440.0
4 TraesCS3B01G597300 chr3D 95.349 258 12 0 568 825 79187477 79187734 6.470000e-111 411.0
5 TraesCS3B01G597300 chr3D 94.052 269 13 3 568 836 129451347 129451612 3.010000e-109 405.0
6 TraesCS3B01G597300 chr3D 84.491 432 37 11 1967 2371 609022816 609022388 1.400000e-107 399.0
7 TraesCS3B01G597300 chr3A 86.573 499 43 10 1096 1570 742383048 742382550 1.710000e-146 529.0
8 TraesCS3B01G597300 chr3A 85.358 321 42 5 47 364 383096851 383096533 6.710000e-86 327.0
9 TraesCS3B01G597300 chr3A 79.834 362 54 11 67 421 34518756 34519105 1.930000e-61 246.0
10 TraesCS3B01G597300 chr3A 81.481 243 17 19 2258 2485 742382512 742382283 9.240000e-40 174.0
11 TraesCS3B01G597300 chr6D 95.736 258 11 0 568 825 2076534 2076277 1.390000e-112 416.0
12 TraesCS3B01G597300 chr6A 95.736 258 11 0 568 825 6897415 6897672 1.390000e-112 416.0
13 TraesCS3B01G597300 chr6A 80.539 334 52 9 44 373 499820529 499820853 6.950000e-61 244.0
14 TraesCS3B01G597300 chr1D 95.736 258 11 0 568 825 452745820 452745563 1.390000e-112 416.0
15 TraesCS3B01G597300 chr5D 95.349 258 12 0 568 825 389514266 389514523 6.470000e-111 411.0
16 TraesCS3B01G597300 chr5D 95.349 258 12 0 568 825 540574445 540574188 6.470000e-111 411.0
17 TraesCS3B01G597300 chr5D 80.533 375 66 7 46 417 306203927 306204297 5.290000e-72 281.0
18 TraesCS3B01G597300 chr4D 95.019 261 13 0 568 828 36540174 36539914 6.470000e-111 411.0
19 TraesCS3B01G597300 chr4D 80.952 378 57 13 47 419 500054262 500053895 4.090000e-73 285.0
20 TraesCS3B01G597300 chr2A 95.038 262 12 1 568 828 762683999 762683738 6.470000e-111 411.0
21 TraesCS3B01G597300 chr7B 81.347 386 58 13 46 421 262000486 262000105 4.060000e-78 302.0
22 TraesCS3B01G597300 chr7B 80.480 333 53 10 46 373 262048224 262047899 6.950000e-61 244.0
23 TraesCS3B01G597300 chr7B 85.393 89 10 3 42 128 551487101 551487014 3.440000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G597300 chr3B 819749522 819752035 2513 True 4643.000000 4643 100.000000 1 2514 1 chr3B.!!$R2 2513
1 TraesCS3B01G597300 chr3D 609022388 609026184 3796 True 668.333333 1166 86.351667 1 2371 3 chr3D.!!$R1 2370
2 TraesCS3B01G597300 chr3A 742382283 742383048 765 True 351.500000 529 84.027000 1096 2485 2 chr3A.!!$R2 1389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 1218 0.037232 AGAGGTCGGGCTTTCTTTCG 60.037 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 4056 0.110823 GGTGCAGTCGCGTAAACTTG 60.111 55.0 5.77 0.0 42.97 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.538945 ACTAGAAGAAGATGGAAGAAGGAC 57.461 41.667 0.00 0.00 0.00 3.85
44 45 6.019748 ACTAGAAGAAGATGGAAGAAGGACA 58.980 40.000 0.00 0.00 0.00 4.02
45 46 5.832539 AGAAGAAGATGGAAGAAGGACAA 57.167 39.130 0.00 0.00 0.00 3.18
50 51 9.183368 GAAGAAGATGGAAGAAGGACAAATATT 57.817 33.333 0.00 0.00 0.00 1.28
57 58 9.880157 ATGGAAGAAGGACAAATATTCAATTTG 57.120 29.630 8.52 8.52 42.81 2.32
64 65 5.759763 GGACAAATATTCAATTTGATGCCCC 59.240 40.000 15.35 6.30 40.42 5.80
65 66 5.358922 ACAAATATTCAATTTGATGCCCCG 58.641 37.500 15.35 0.00 40.42 5.73
86 87 1.293924 CTCATCTGCACCCGATGAAC 58.706 55.000 15.55 0.00 44.62 3.18
157 160 3.499338 AGGTGAAAGATGTTCCAATGCA 58.501 40.909 0.00 0.00 0.00 3.96
158 161 3.508793 AGGTGAAAGATGTTCCAATGCAG 59.491 43.478 0.00 0.00 0.00 4.41
159 162 3.507233 GGTGAAAGATGTTCCAATGCAGA 59.493 43.478 0.00 0.00 0.00 4.26
177 180 1.888512 AGAATGCTCGTGCCAAATTGT 59.111 42.857 7.05 0.00 38.71 2.71
186 189 5.041951 TCGTGCCAAATTGTATCTTGTTC 57.958 39.130 0.00 0.00 0.00 3.18
187 190 4.517075 TCGTGCCAAATTGTATCTTGTTCA 59.483 37.500 0.00 0.00 0.00 3.18
189 192 5.334802 CGTGCCAAATTGTATCTTGTTCAGA 60.335 40.000 0.00 0.00 35.33 3.27
190 193 6.623549 CGTGCCAAATTGTATCTTGTTCAGAT 60.624 38.462 0.00 0.00 45.08 2.90
236 239 5.169836 AGACAAAATCGGTCAAAACAGTC 57.830 39.130 0.00 0.00 37.74 3.51
237 240 4.638421 AGACAAAATCGGTCAAAACAGTCA 59.362 37.500 0.00 0.00 37.74 3.41
238 241 5.299279 AGACAAAATCGGTCAAAACAGTCAT 59.701 36.000 0.00 0.00 37.74 3.06
239 242 5.280945 ACAAAATCGGTCAAAACAGTCATG 58.719 37.500 0.00 0.00 0.00 3.07
257 261 8.827677 ACAGTCATGAACAGTAAACTTTCTTAC 58.172 33.333 0.00 0.00 32.84 2.34
260 264 7.798982 GTCATGAACAGTAAACTTTCTTACAGC 59.201 37.037 0.00 0.00 34.75 4.40
261 265 7.715249 TCATGAACAGTAAACTTTCTTACAGCT 59.285 33.333 0.00 0.00 34.75 4.24
268 272 8.188139 CAGTAAACTTTCTTACAGCTCCAAAAA 58.812 33.333 0.00 0.00 34.75 1.94
323 327 3.302365 AACTCCATGAAATTTGGCACG 57.698 42.857 0.00 0.00 34.06 5.34
328 332 2.752354 CCATGAAATTTGGCACGGACTA 59.248 45.455 0.00 0.00 0.00 2.59
348 352 1.568514 GCGCACATGAGCATCTAGC 59.431 57.895 15.56 6.10 46.19 3.42
364 368 7.544511 GCATCTAGCATCACAAATAAAATCG 57.455 36.000 0.00 0.00 44.79 3.34
365 369 6.580041 GCATCTAGCATCACAAATAAAATCGG 59.420 38.462 0.00 0.00 44.79 4.18
366 370 7.520453 GCATCTAGCATCACAAATAAAATCGGA 60.520 37.037 0.00 0.00 44.79 4.55
372 380 7.872483 AGCATCACAAATAAAATCGGAGTTTTT 59.128 29.630 8.84 1.93 33.62 1.94
425 448 4.634004 TGTTCATCTAGGGTGCATAAAACG 59.366 41.667 0.00 0.00 0.00 3.60
428 451 0.655733 CTAGGGTGCATAAAACGCCG 59.344 55.000 0.00 0.00 38.64 6.46
433 456 0.179220 GTGCATAAAACGCCGCGTAA 60.179 50.000 20.51 8.42 39.99 3.18
503 946 9.860650 AGAGACAAAAGATAGAAGCTAGATAGA 57.139 33.333 0.00 0.00 0.00 1.98
566 1015 9.693739 AAACAGAGATAGAAGACAGAAGATAGA 57.306 33.333 0.00 0.00 0.00 1.98
567 1016 8.908786 ACAGAGATAGAAGACAGAAGATAGAG 57.091 38.462 0.00 0.00 0.00 2.43
568 1017 8.713971 ACAGAGATAGAAGACAGAAGATAGAGA 58.286 37.037 0.00 0.00 0.00 3.10
569 1018 9.730705 CAGAGATAGAAGACAGAAGATAGAGAT 57.269 37.037 0.00 0.00 0.00 2.75
570 1019 9.730705 AGAGATAGAAGACAGAAGATAGAGATG 57.269 37.037 0.00 0.00 0.00 2.90
571 1020 9.725019 GAGATAGAAGACAGAAGATAGAGATGA 57.275 37.037 0.00 0.00 0.00 2.92
572 1021 9.507329 AGATAGAAGACAGAAGATAGAGATGAC 57.493 37.037 0.00 0.00 0.00 3.06
573 1022 6.618287 AGAAGACAGAAGATAGAGATGACG 57.382 41.667 0.00 0.00 0.00 4.35
574 1023 6.119536 AGAAGACAGAAGATAGAGATGACGT 58.880 40.000 0.00 0.00 0.00 4.34
575 1024 6.260050 AGAAGACAGAAGATAGAGATGACGTC 59.740 42.308 9.11 9.11 0.00 4.34
576 1025 5.680619 AGACAGAAGATAGAGATGACGTCT 58.319 41.667 17.92 0.00 40.81 4.18
577 1026 6.822442 AGACAGAAGATAGAGATGACGTCTA 58.178 40.000 17.92 3.52 37.29 2.59
578 1027 6.704493 AGACAGAAGATAGAGATGACGTCTAC 59.296 42.308 17.92 10.52 37.29 2.59
579 1028 6.350103 ACAGAAGATAGAGATGACGTCTACA 58.650 40.000 17.92 0.00 37.29 2.74
580 1029 6.259167 ACAGAAGATAGAGATGACGTCTACAC 59.741 42.308 17.92 9.17 37.29 2.90
589 1038 2.202623 CGTCTACACGGCTGGAGC 60.203 66.667 0.00 0.00 42.73 4.70
590 1039 2.202623 GTCTACACGGCTGGAGCG 60.203 66.667 0.00 0.00 43.26 5.03
591 1040 2.675423 TCTACACGGCTGGAGCGT 60.675 61.111 0.00 0.00 43.26 5.07
592 1041 1.377594 TCTACACGGCTGGAGCGTA 60.378 57.895 0.00 0.00 43.26 4.42
593 1042 1.226603 CTACACGGCTGGAGCGTAC 60.227 63.158 0.00 0.00 43.26 3.67
594 1043 2.914797 CTACACGGCTGGAGCGTACG 62.915 65.000 11.84 11.84 43.26 3.67
605 1054 3.760917 GCGTACGGCTAGGGAGAT 58.239 61.111 18.39 0.00 39.11 2.75
606 1055 2.039509 GCGTACGGCTAGGGAGATT 58.960 57.895 18.39 0.00 39.11 2.40
607 1056 0.388294 GCGTACGGCTAGGGAGATTT 59.612 55.000 18.39 0.00 39.11 2.17
608 1057 1.202498 GCGTACGGCTAGGGAGATTTT 60.202 52.381 18.39 0.00 39.11 1.82
609 1058 2.740452 CGTACGGCTAGGGAGATTTTC 58.260 52.381 7.57 0.00 0.00 2.29
610 1059 2.361438 CGTACGGCTAGGGAGATTTTCT 59.639 50.000 7.57 0.00 0.00 2.52
611 1060 3.567164 CGTACGGCTAGGGAGATTTTCTA 59.433 47.826 7.57 0.00 0.00 2.10
612 1061 4.556302 CGTACGGCTAGGGAGATTTTCTAC 60.556 50.000 7.57 0.00 0.00 2.59
619 1068 3.229697 GGGAGATTTTCTACCCCCATG 57.770 52.381 0.00 0.00 41.88 3.66
620 1069 2.158460 GGGAGATTTTCTACCCCCATGG 60.158 54.545 4.14 4.14 41.88 3.66
621 1070 2.783510 GGAGATTTTCTACCCCCATGGA 59.216 50.000 15.22 0.00 38.00 3.41
622 1071 3.399305 GGAGATTTTCTACCCCCATGGAT 59.601 47.826 15.22 0.19 38.00 3.41
623 1072 4.401925 GAGATTTTCTACCCCCATGGATG 58.598 47.826 15.22 6.08 38.00 3.51
625 1074 0.555769 TTTCTACCCCCATGGATGGC 59.444 55.000 15.22 0.00 46.70 4.40
626 1075 1.705002 TTCTACCCCCATGGATGGCG 61.705 60.000 15.22 8.38 46.70 5.69
629 1078 4.900704 CCCCCATGGATGGCGGTG 62.901 72.222 15.22 0.00 46.70 4.94
630 1079 4.127744 CCCCATGGATGGCGGTGT 62.128 66.667 15.22 0.00 46.70 4.16
631 1080 2.829914 CCCATGGATGGCGGTGTG 60.830 66.667 15.22 0.00 46.70 3.82
632 1081 2.271821 CCATGGATGGCGGTGTGA 59.728 61.111 5.56 0.00 41.75 3.58
633 1082 1.152902 CCATGGATGGCGGTGTGAT 60.153 57.895 5.56 0.00 41.75 3.06
634 1083 0.752743 CCATGGATGGCGGTGTGATT 60.753 55.000 5.56 0.00 41.75 2.57
635 1084 1.105457 CATGGATGGCGGTGTGATTT 58.895 50.000 0.00 0.00 0.00 2.17
636 1085 2.296792 CATGGATGGCGGTGTGATTTA 58.703 47.619 0.00 0.00 0.00 1.40
637 1086 2.036958 TGGATGGCGGTGTGATTTAG 57.963 50.000 0.00 0.00 0.00 1.85
638 1087 1.308998 GGATGGCGGTGTGATTTAGG 58.691 55.000 0.00 0.00 0.00 2.69
639 1088 1.308998 GATGGCGGTGTGATTTAGGG 58.691 55.000 0.00 0.00 0.00 3.53
640 1089 0.916086 ATGGCGGTGTGATTTAGGGA 59.084 50.000 0.00 0.00 0.00 4.20
641 1090 0.916086 TGGCGGTGTGATTTAGGGAT 59.084 50.000 0.00 0.00 0.00 3.85
642 1091 2.120312 TGGCGGTGTGATTTAGGGATA 58.880 47.619 0.00 0.00 0.00 2.59
643 1092 2.104111 TGGCGGTGTGATTTAGGGATAG 59.896 50.000 0.00 0.00 0.00 2.08
644 1093 2.550208 GGCGGTGTGATTTAGGGATAGG 60.550 54.545 0.00 0.00 0.00 2.57
645 1094 2.367567 GCGGTGTGATTTAGGGATAGGA 59.632 50.000 0.00 0.00 0.00 2.94
646 1095 3.008049 GCGGTGTGATTTAGGGATAGGAT 59.992 47.826 0.00 0.00 0.00 3.24
647 1096 4.822026 CGGTGTGATTTAGGGATAGGATC 58.178 47.826 0.00 0.00 0.00 3.36
648 1097 4.528596 CGGTGTGATTTAGGGATAGGATCT 59.471 45.833 0.00 0.00 0.00 2.75
649 1098 5.715279 CGGTGTGATTTAGGGATAGGATCTA 59.285 44.000 0.00 0.00 0.00 1.98
650 1099 6.350277 CGGTGTGATTTAGGGATAGGATCTAC 60.350 46.154 0.00 0.00 0.00 2.59
651 1100 6.070710 GGTGTGATTTAGGGATAGGATCTACC 60.071 46.154 0.00 0.00 39.35 3.18
652 1101 5.715279 TGTGATTTAGGGATAGGATCTACCG 59.285 44.000 0.00 0.00 44.74 4.02
653 1102 5.715753 GTGATTTAGGGATAGGATCTACCGT 59.284 44.000 0.00 0.00 44.74 4.83
654 1103 6.210984 GTGATTTAGGGATAGGATCTACCGTT 59.789 42.308 0.00 0.00 44.74 4.44
655 1104 6.436532 TGATTTAGGGATAGGATCTACCGTTC 59.563 42.308 0.00 0.00 44.74 3.95
656 1105 3.172471 AGGGATAGGATCTACCGTTCC 57.828 52.381 0.00 0.00 44.74 3.62
657 1106 2.723010 AGGGATAGGATCTACCGTTCCT 59.277 50.000 0.00 0.00 44.55 3.36
658 1107 3.142407 AGGGATAGGATCTACCGTTCCTT 59.858 47.826 0.00 0.00 42.40 3.36
659 1108 4.356190 AGGGATAGGATCTACCGTTCCTTA 59.644 45.833 0.00 0.00 42.40 2.69
660 1109 4.705991 GGGATAGGATCTACCGTTCCTTAG 59.294 50.000 0.00 0.00 42.40 2.18
661 1110 4.705991 GGATAGGATCTACCGTTCCTTAGG 59.294 50.000 0.00 0.00 42.40 2.69
662 1111 2.317973 AGGATCTACCGTTCCTTAGGC 58.682 52.381 0.00 0.00 39.36 3.93
663 1112 2.091222 AGGATCTACCGTTCCTTAGGCT 60.091 50.000 0.00 0.00 39.36 4.58
664 1113 2.036089 GGATCTACCGTTCCTTAGGCTG 59.964 54.545 0.00 0.00 0.00 4.85
665 1114 1.481871 TCTACCGTTCCTTAGGCTGG 58.518 55.000 0.00 0.00 0.00 4.85
666 1115 1.006281 TCTACCGTTCCTTAGGCTGGA 59.994 52.381 9.61 0.00 0.00 3.86
667 1116 1.136500 CTACCGTTCCTTAGGCTGGAC 59.864 57.143 9.61 0.00 32.65 4.02
668 1117 0.834687 ACCGTTCCTTAGGCTGGACA 60.835 55.000 9.61 0.00 32.65 4.02
669 1118 0.391263 CCGTTCCTTAGGCTGGACAC 60.391 60.000 0.00 0.00 32.65 3.67
670 1119 0.736325 CGTTCCTTAGGCTGGACACG 60.736 60.000 0.00 5.84 34.56 4.49
671 1120 0.606604 GTTCCTTAGGCTGGACACGA 59.393 55.000 0.00 0.00 32.65 4.35
672 1121 1.207329 GTTCCTTAGGCTGGACACGAT 59.793 52.381 0.00 0.00 32.65 3.73
673 1122 1.568504 TCCTTAGGCTGGACACGATT 58.431 50.000 0.00 0.00 0.00 3.34
674 1123 1.906574 TCCTTAGGCTGGACACGATTT 59.093 47.619 0.00 0.00 0.00 2.17
675 1124 3.101437 TCCTTAGGCTGGACACGATTTA 58.899 45.455 0.00 0.00 0.00 1.40
676 1125 3.709653 TCCTTAGGCTGGACACGATTTAT 59.290 43.478 0.00 0.00 0.00 1.40
677 1126 4.163458 TCCTTAGGCTGGACACGATTTATT 59.837 41.667 0.00 0.00 0.00 1.40
678 1127 4.273480 CCTTAGGCTGGACACGATTTATTG 59.727 45.833 0.00 0.00 0.00 1.90
679 1128 2.017049 AGGCTGGACACGATTTATTGC 58.983 47.619 0.00 0.00 0.00 3.56
680 1129 2.017049 GGCTGGACACGATTTATTGCT 58.983 47.619 0.00 0.00 0.00 3.91
681 1130 2.423538 GGCTGGACACGATTTATTGCTT 59.576 45.455 0.00 0.00 0.00 3.91
682 1131 3.429085 GCTGGACACGATTTATTGCTTG 58.571 45.455 0.00 0.00 0.00 4.01
683 1132 3.731867 GCTGGACACGATTTATTGCTTGG 60.732 47.826 0.00 0.00 0.00 3.61
684 1133 2.163412 TGGACACGATTTATTGCTTGGC 59.837 45.455 0.00 0.00 0.00 4.52
685 1134 2.163412 GGACACGATTTATTGCTTGGCA 59.837 45.455 0.00 0.00 36.47 4.92
686 1135 3.181487 GGACACGATTTATTGCTTGGCAT 60.181 43.478 0.00 0.00 38.76 4.40
687 1136 4.423732 GACACGATTTATTGCTTGGCATT 58.576 39.130 0.00 0.00 38.76 3.56
688 1137 4.175516 ACACGATTTATTGCTTGGCATTG 58.824 39.130 0.00 0.00 38.76 2.82
689 1138 4.175516 CACGATTTATTGCTTGGCATTGT 58.824 39.130 0.00 0.00 38.76 2.71
690 1139 5.105957 ACACGATTTATTGCTTGGCATTGTA 60.106 36.000 0.00 0.00 38.76 2.41
691 1140 5.978919 CACGATTTATTGCTTGGCATTGTAT 59.021 36.000 0.00 0.00 38.76 2.29
692 1141 6.142798 CACGATTTATTGCTTGGCATTGTATC 59.857 38.462 0.00 0.00 38.76 2.24
693 1142 6.183360 ACGATTTATTGCTTGGCATTGTATCA 60.183 34.615 0.00 0.00 38.76 2.15
694 1143 6.696583 CGATTTATTGCTTGGCATTGTATCAA 59.303 34.615 0.00 0.00 38.76 2.57
695 1144 7.222417 CGATTTATTGCTTGGCATTGTATCAAA 59.778 33.333 0.00 0.00 38.76 2.69
696 1145 8.967664 ATTTATTGCTTGGCATTGTATCAAAT 57.032 26.923 0.00 0.00 38.76 2.32
697 1146 8.789825 TTTATTGCTTGGCATTGTATCAAATT 57.210 26.923 0.00 0.00 38.76 1.82
698 1147 9.881649 TTTATTGCTTGGCATTGTATCAAATTA 57.118 25.926 0.00 0.00 38.76 1.40
700 1149 8.967664 ATTGCTTGGCATTGTATCAAATTATT 57.032 26.923 0.00 0.00 38.76 1.40
701 1150 8.789825 TTGCTTGGCATTGTATCAAATTATTT 57.210 26.923 0.00 0.00 38.76 1.40
702 1151 8.789825 TGCTTGGCATTGTATCAAATTATTTT 57.210 26.923 0.00 0.00 31.71 1.82
703 1152 9.881649 TGCTTGGCATTGTATCAAATTATTTTA 57.118 25.926 0.00 0.00 31.71 1.52
723 1172 7.833285 TTTTATTTTTAGGGTGCTCTGAACT 57.167 32.000 0.00 0.00 0.00 3.01
724 1173 7.833285 TTTATTTTTAGGGTGCTCTGAACTT 57.167 32.000 0.00 0.00 0.00 2.66
725 1174 7.833285 TTATTTTTAGGGTGCTCTGAACTTT 57.167 32.000 0.00 0.00 0.00 2.66
726 1175 6.731292 ATTTTTAGGGTGCTCTGAACTTTT 57.269 33.333 0.00 0.00 0.00 2.27
727 1176 6.538945 TTTTTAGGGTGCTCTGAACTTTTT 57.461 33.333 0.00 0.00 0.00 1.94
728 1177 5.514274 TTTAGGGTGCTCTGAACTTTTTG 57.486 39.130 0.00 0.00 0.00 2.44
729 1178 2.310538 AGGGTGCTCTGAACTTTTTGG 58.689 47.619 0.00 0.00 0.00 3.28
730 1179 1.269778 GGGTGCTCTGAACTTTTTGGC 60.270 52.381 0.00 0.00 0.00 4.52
731 1180 1.683385 GGTGCTCTGAACTTTTTGGCT 59.317 47.619 0.00 0.00 0.00 4.75
732 1181 2.544486 GGTGCTCTGAACTTTTTGGCTG 60.544 50.000 0.00 0.00 0.00 4.85
733 1182 2.099756 GTGCTCTGAACTTTTTGGCTGT 59.900 45.455 0.00 0.00 0.00 4.40
734 1183 2.099592 TGCTCTGAACTTTTTGGCTGTG 59.900 45.455 0.00 0.00 0.00 3.66
735 1184 2.099756 GCTCTGAACTTTTTGGCTGTGT 59.900 45.455 0.00 0.00 0.00 3.72
736 1185 3.699067 CTCTGAACTTTTTGGCTGTGTG 58.301 45.455 0.00 0.00 0.00 3.82
737 1186 2.159254 TCTGAACTTTTTGGCTGTGTGC 60.159 45.455 0.00 0.00 41.94 4.57
738 1187 1.547820 TGAACTTTTTGGCTGTGTGCA 59.452 42.857 0.00 0.00 45.15 4.57
739 1188 2.168106 TGAACTTTTTGGCTGTGTGCAT 59.832 40.909 0.00 0.00 45.15 3.96
740 1189 2.514205 ACTTTTTGGCTGTGTGCATC 57.486 45.000 0.00 0.00 45.15 3.91
741 1190 2.034124 ACTTTTTGGCTGTGTGCATCT 58.966 42.857 0.00 0.00 45.15 2.90
742 1191 3.221771 ACTTTTTGGCTGTGTGCATCTA 58.778 40.909 0.00 0.00 45.15 1.98
743 1192 3.254166 ACTTTTTGGCTGTGTGCATCTAG 59.746 43.478 0.00 0.00 45.15 2.43
744 1193 1.167851 TTTGGCTGTGTGCATCTAGC 58.832 50.000 9.68 9.68 45.15 3.42
745 1194 0.325933 TTGGCTGTGTGCATCTAGCT 59.674 50.000 15.51 0.00 45.94 3.32
746 1195 1.194218 TGGCTGTGTGCATCTAGCTA 58.806 50.000 15.51 9.22 45.94 3.32
747 1196 1.764723 TGGCTGTGTGCATCTAGCTAT 59.235 47.619 15.51 0.00 45.94 2.97
748 1197 2.141517 GGCTGTGTGCATCTAGCTATG 58.858 52.381 15.51 0.00 45.94 2.23
757 1206 3.214697 CATCTAGCTATGCAGAGGTCG 57.785 52.381 17.53 11.17 0.00 4.79
758 1207 1.610363 TCTAGCTATGCAGAGGTCGG 58.390 55.000 17.53 11.25 0.00 4.79
759 1208 0.600557 CTAGCTATGCAGAGGTCGGG 59.399 60.000 17.53 5.10 0.00 5.14
760 1209 1.464376 TAGCTATGCAGAGGTCGGGC 61.464 60.000 17.53 0.00 0.00 6.13
761 1210 2.801631 GCTATGCAGAGGTCGGGCT 61.802 63.158 10.92 0.00 0.00 5.19
762 1211 1.826024 CTATGCAGAGGTCGGGCTT 59.174 57.895 0.00 0.00 0.00 4.35
763 1212 0.179000 CTATGCAGAGGTCGGGCTTT 59.821 55.000 0.00 0.00 0.00 3.51
764 1213 0.178068 TATGCAGAGGTCGGGCTTTC 59.822 55.000 0.00 0.00 0.00 2.62
765 1214 1.557269 ATGCAGAGGTCGGGCTTTCT 61.557 55.000 0.00 0.00 0.00 2.52
766 1215 1.003233 GCAGAGGTCGGGCTTTCTT 60.003 57.895 0.00 0.00 0.00 2.52
767 1216 0.606673 GCAGAGGTCGGGCTTTCTTT 60.607 55.000 0.00 0.00 0.00 2.52
768 1217 1.443802 CAGAGGTCGGGCTTTCTTTC 58.556 55.000 0.00 0.00 0.00 2.62
769 1218 0.037232 AGAGGTCGGGCTTTCTTTCG 60.037 55.000 0.00 0.00 0.00 3.46
770 1219 0.037605 GAGGTCGGGCTTTCTTTCGA 60.038 55.000 0.00 0.00 0.00 3.71
771 1220 0.613777 AGGTCGGGCTTTCTTTCGAT 59.386 50.000 0.00 0.00 34.13 3.59
772 1221 1.829222 AGGTCGGGCTTTCTTTCGATA 59.171 47.619 0.00 0.00 34.13 2.92
773 1222 2.159085 AGGTCGGGCTTTCTTTCGATAG 60.159 50.000 0.00 0.00 34.13 2.08
774 1223 2.202566 GTCGGGCTTTCTTTCGATAGG 58.797 52.381 2.93 0.00 34.13 2.57
775 1224 2.104967 TCGGGCTTTCTTTCGATAGGA 58.895 47.619 2.93 0.00 0.00 2.94
776 1225 2.698797 TCGGGCTTTCTTTCGATAGGAT 59.301 45.455 2.93 0.00 0.00 3.24
777 1226 3.134081 TCGGGCTTTCTTTCGATAGGATT 59.866 43.478 2.93 0.00 0.00 3.01
778 1227 3.248602 CGGGCTTTCTTTCGATAGGATTG 59.751 47.826 2.93 0.00 0.00 2.67
779 1228 4.200092 GGGCTTTCTTTCGATAGGATTGT 58.800 43.478 2.93 0.00 0.00 2.71
780 1229 5.365619 GGGCTTTCTTTCGATAGGATTGTA 58.634 41.667 2.93 0.00 0.00 2.41
781 1230 5.998363 GGGCTTTCTTTCGATAGGATTGTAT 59.002 40.000 2.93 0.00 0.00 2.29
782 1231 6.147985 GGGCTTTCTTTCGATAGGATTGTATC 59.852 42.308 2.93 0.00 0.00 2.24
783 1232 6.706270 GGCTTTCTTTCGATAGGATTGTATCA 59.294 38.462 2.93 0.00 30.79 2.15
784 1233 7.307455 GGCTTTCTTTCGATAGGATTGTATCAC 60.307 40.741 2.93 0.00 30.79 3.06
785 1234 7.307455 GCTTTCTTTCGATAGGATTGTATCACC 60.307 40.741 2.93 0.00 30.79 4.02
786 1235 6.978674 TCTTTCGATAGGATTGTATCACCT 57.021 37.500 2.93 0.00 37.76 4.00
787 1236 6.982852 TCTTTCGATAGGATTGTATCACCTC 58.017 40.000 2.93 0.00 35.52 3.85
788 1237 5.372547 TTCGATAGGATTGTATCACCTCG 57.627 43.478 0.00 0.00 35.52 4.63
789 1238 4.648651 TCGATAGGATTGTATCACCTCGA 58.351 43.478 0.00 0.00 35.52 4.04
790 1239 5.254115 TCGATAGGATTGTATCACCTCGAT 58.746 41.667 0.00 0.00 38.21 3.59
791 1240 6.412214 TCGATAGGATTGTATCACCTCGATA 58.588 40.000 0.00 0.00 35.39 2.92
792 1241 7.054751 TCGATAGGATTGTATCACCTCGATAT 58.945 38.462 0.00 0.00 38.85 1.63
793 1242 8.208903 TCGATAGGATTGTATCACCTCGATATA 58.791 37.037 0.00 0.00 38.85 0.86
794 1243 9.004717 CGATAGGATTGTATCACCTCGATATAT 57.995 37.037 0.00 0.00 38.85 0.86
820 1269 9.830975 TCTATTCAATGAAATGTCCTTTATCGA 57.169 29.630 0.00 0.00 0.00 3.59
824 1273 9.973450 TTCAATGAAATGTCCTTTATCGAAAAA 57.027 25.926 0.00 0.00 0.00 1.94
825 1274 9.624697 TCAATGAAATGTCCTTTATCGAAAAAG 57.375 29.630 0.00 0.00 36.43 2.27
826 1275 9.624697 CAATGAAATGTCCTTTATCGAAAAAGA 57.375 29.630 0.00 0.00 38.50 2.52
828 1277 9.846248 ATGAAATGTCCTTTATCGAAAAAGAAG 57.154 29.630 0.00 0.00 38.50 2.85
829 1278 9.062524 TGAAATGTCCTTTATCGAAAAAGAAGA 57.937 29.630 0.00 0.00 38.50 2.87
830 1279 9.331106 GAAATGTCCTTTATCGAAAAAGAAGAC 57.669 33.333 0.00 0.00 38.50 3.01
874 1323 9.869667 ATAAAACAGATAGAAGGTAGCTAGAGA 57.130 33.333 0.00 0.00 0.00 3.10
875 1324 8.776061 AAAACAGATAGAAGGTAGCTAGAGAT 57.224 34.615 0.00 0.00 0.00 2.75
876 1325 9.869667 AAAACAGATAGAAGGTAGCTAGAGATA 57.130 33.333 0.00 0.00 0.00 1.98
978 1427 3.163110 AACGTTTGGACAGTGCGCG 62.163 57.895 0.00 0.00 0.00 6.86
1053 1503 1.699083 TGATCCAGGCAACAGTCTCAA 59.301 47.619 0.00 0.00 41.41 3.02
1061 1511 5.350633 CAGGCAACAGTCTCAATTGAAAAA 58.649 37.500 9.88 0.00 41.41 1.94
1091 1541 3.201290 CACATCACCTCTTATCAGGCAC 58.799 50.000 0.00 0.00 36.98 5.01
1092 1542 2.171448 ACATCACCTCTTATCAGGCACC 59.829 50.000 0.00 0.00 36.98 5.01
1093 1543 0.824109 TCACCTCTTATCAGGCACCG 59.176 55.000 0.00 0.00 36.98 4.94
1094 1544 0.811616 CACCTCTTATCAGGCACCGC 60.812 60.000 0.00 0.00 36.98 5.68
1188 1647 3.435105 TTTGTCATTGTGGTGTGCTTC 57.565 42.857 0.00 0.00 0.00 3.86
1209 1668 1.068055 GCCTGTCTTGGATGTGCAAAG 60.068 52.381 0.00 0.00 0.00 2.77
1260 1725 5.906113 TCGGAAATAAATTGCTGGCTTAA 57.094 34.783 0.00 0.00 0.00 1.85
1266 1753 9.249457 GGAAATAAATTGCTGGCTTAAGATAAC 57.751 33.333 6.67 0.00 0.00 1.89
1342 1829 1.269998 GGGATGATCGAAGTAGTCCGG 59.730 57.143 0.00 0.00 0.00 5.14
1373 1860 1.668826 TAAAGACCATCACCAGCCCT 58.331 50.000 0.00 0.00 0.00 5.19
1402 1889 5.384063 TGCAATATTGTTGTCAAACGGAT 57.616 34.783 16.61 0.00 39.30 4.18
1404 1891 6.914259 TGCAATATTGTTGTCAAACGGATAA 58.086 32.000 16.61 0.00 39.30 1.75
1418 1905 7.170998 GTCAAACGGATAAGATATGTTGGGTAG 59.829 40.741 0.00 0.00 0.00 3.18
1423 1910 6.350277 CGGATAAGATATGTTGGGTAGACCTC 60.350 46.154 0.00 0.00 41.11 3.85
1539 2028 3.109847 CCAACATTATGGGTCCCGG 57.890 57.895 2.65 0.00 36.79 5.73
1571 2060 5.702865 TGTGTTGATCAGCTAGCAAATTTC 58.297 37.500 18.83 6.84 34.72 2.17
1580 2069 7.759489 TCAGCTAGCAAATTTCCTAGAAAAA 57.241 32.000 18.55 0.00 34.36 1.94
1602 2091 1.378531 TCCAGAAATTTGATCCGCCG 58.621 50.000 0.00 0.00 0.00 6.46
1611 2100 7.647715 CAGAAATTTGATCCGCCGTTTAAATAT 59.352 33.333 0.00 0.00 0.00 1.28
1612 2101 8.194769 AGAAATTTGATCCGCCGTTTAAATATT 58.805 29.630 0.00 0.00 0.00 1.28
1647 2136 0.025001 CGAGTTGCGCTCCGTAATTG 59.975 55.000 9.73 0.00 41.10 2.32
1700 2189 6.128445 CGTATTCCATACTTTCATCTCCATGC 60.128 42.308 0.00 0.00 33.59 4.06
1722 2211 3.703052 CTGGCTTAATTGCTCTCCCAAAT 59.297 43.478 0.00 0.00 0.00 2.32
1737 2226 2.905736 CCCAAATGGACCCAAATTGAGT 59.094 45.455 15.31 0.00 37.39 3.41
1738 2227 3.327464 CCCAAATGGACCCAAATTGAGTT 59.673 43.478 15.31 0.00 37.39 3.01
1740 2229 4.756135 CCAAATGGACCCAAATTGAGTTTG 59.244 41.667 15.31 9.50 41.34 2.93
1742 2231 4.605640 ATGGACCCAAATTGAGTTTGTG 57.394 40.909 0.00 0.00 44.58 3.33
1744 2233 2.698274 GGACCCAAATTGAGTTTGTGGT 59.302 45.455 11.34 11.34 45.71 4.16
1751 2240 6.151691 CCAAATTGAGTTTGTGGTAGTCATG 58.848 40.000 0.00 0.00 44.58 3.07
1756 2245 4.532126 TGAGTTTGTGGTAGTCATGGATCT 59.468 41.667 0.00 0.00 0.00 2.75
1758 2247 4.780021 AGTTTGTGGTAGTCATGGATCTCT 59.220 41.667 0.00 0.00 0.00 3.10
1759 2248 4.743057 TTGTGGTAGTCATGGATCTCTG 57.257 45.455 0.00 0.00 0.00 3.35
1760 2249 3.713003 TGTGGTAGTCATGGATCTCTGT 58.287 45.455 0.00 0.00 0.00 3.41
1761 2250 4.096681 TGTGGTAGTCATGGATCTCTGTT 58.903 43.478 0.00 0.00 0.00 3.16
1762 2251 4.160439 TGTGGTAGTCATGGATCTCTGTTC 59.840 45.833 0.00 0.00 0.00 3.18
1763 2252 3.381590 TGGTAGTCATGGATCTCTGTTCG 59.618 47.826 0.00 0.00 0.00 3.95
1764 2253 3.243569 GGTAGTCATGGATCTCTGTTCGG 60.244 52.174 0.00 0.00 0.00 4.30
1765 2254 2.461695 AGTCATGGATCTCTGTTCGGT 58.538 47.619 0.00 0.00 0.00 4.69
1766 2255 3.632333 AGTCATGGATCTCTGTTCGGTA 58.368 45.455 0.00 0.00 0.00 4.02
1767 2256 3.634448 AGTCATGGATCTCTGTTCGGTAG 59.366 47.826 0.00 0.00 0.00 3.18
1768 2257 2.362397 TCATGGATCTCTGTTCGGTAGC 59.638 50.000 0.00 0.00 0.00 3.58
1769 2258 2.145397 TGGATCTCTGTTCGGTAGCT 57.855 50.000 0.00 0.00 0.00 3.32
1770 2259 2.025155 TGGATCTCTGTTCGGTAGCTC 58.975 52.381 0.00 0.00 0.00 4.09
1771 2260 2.303175 GGATCTCTGTTCGGTAGCTCT 58.697 52.381 0.00 0.00 0.00 4.09
1772 2261 2.034053 GGATCTCTGTTCGGTAGCTCTG 59.966 54.545 0.00 0.00 0.00 3.35
1773 2262 2.201921 TCTCTGTTCGGTAGCTCTGT 57.798 50.000 0.00 0.00 0.00 3.41
1774 2263 2.085320 TCTCTGTTCGGTAGCTCTGTC 58.915 52.381 0.00 0.00 0.00 3.51
1775 2264 0.803117 TCTGTTCGGTAGCTCTGTCG 59.197 55.000 0.00 0.00 0.00 4.35
1776 2265 0.522180 CTGTTCGGTAGCTCTGTCGT 59.478 55.000 0.00 0.00 0.00 4.34
1777 2266 0.520404 TGTTCGGTAGCTCTGTCGTC 59.480 55.000 0.00 0.00 0.00 4.20
1778 2267 0.179169 GTTCGGTAGCTCTGTCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
1779 2268 1.310933 TTCGGTAGCTCTGTCGTCCC 61.311 60.000 0.00 0.00 0.00 4.46
1780 2269 1.749638 CGGTAGCTCTGTCGTCCCT 60.750 63.158 0.00 0.00 0.00 4.20
1781 2270 1.313812 CGGTAGCTCTGTCGTCCCTT 61.314 60.000 0.00 0.00 0.00 3.95
1782 2271 0.456628 GGTAGCTCTGTCGTCCCTTC 59.543 60.000 0.00 0.00 0.00 3.46
1783 2272 0.456628 GTAGCTCTGTCGTCCCTTCC 59.543 60.000 0.00 0.00 0.00 3.46
1784 2273 0.331954 TAGCTCTGTCGTCCCTTCCT 59.668 55.000 0.00 0.00 0.00 3.36
1785 2274 0.968393 AGCTCTGTCGTCCCTTCCTC 60.968 60.000 0.00 0.00 0.00 3.71
1786 2275 1.950973 GCTCTGTCGTCCCTTCCTCC 61.951 65.000 0.00 0.00 0.00 4.30
1787 2276 1.305046 TCTGTCGTCCCTTCCTCCC 60.305 63.158 0.00 0.00 0.00 4.30
1788 2277 1.609501 CTGTCGTCCCTTCCTCCCA 60.610 63.158 0.00 0.00 0.00 4.37
1789 2278 1.152204 TGTCGTCCCTTCCTCCCAA 60.152 57.895 0.00 0.00 0.00 4.12
1790 2279 0.765135 TGTCGTCCCTTCCTCCCAAA 60.765 55.000 0.00 0.00 0.00 3.28
1791 2280 0.399075 GTCGTCCCTTCCTCCCAAAA 59.601 55.000 0.00 0.00 0.00 2.44
1792 2281 1.142060 TCGTCCCTTCCTCCCAAAAA 58.858 50.000 0.00 0.00 0.00 1.94
1810 2299 3.710326 AAAAAGCTTTGTCGTCCCTTC 57.290 42.857 13.54 0.00 0.00 3.46
1811 2300 1.605753 AAAGCTTTGTCGTCCCTTCC 58.394 50.000 11.80 0.00 0.00 3.46
1812 2301 0.765510 AAGCTTTGTCGTCCCTTCCT 59.234 50.000 0.00 0.00 0.00 3.36
1813 2302 0.321996 AGCTTTGTCGTCCCTTCCTC 59.678 55.000 0.00 0.00 0.00 3.71
1814 2303 0.673956 GCTTTGTCGTCCCTTCCTCC 60.674 60.000 0.00 0.00 0.00 4.30
1815 2304 0.389948 CTTTGTCGTCCCTTCCTCCG 60.390 60.000 0.00 0.00 0.00 4.63
1816 2305 2.444700 TTTGTCGTCCCTTCCTCCGC 62.445 60.000 0.00 0.00 0.00 5.54
1817 2306 3.379445 GTCGTCCCTTCCTCCGCA 61.379 66.667 0.00 0.00 0.00 5.69
1818 2307 2.602267 TCGTCCCTTCCTCCGCAA 60.602 61.111 0.00 0.00 0.00 4.85
1819 2308 2.211410 TCGTCCCTTCCTCCGCAAA 61.211 57.895 0.00 0.00 0.00 3.68
1820 2309 1.302192 CGTCCCTTCCTCCGCAAAA 60.302 57.895 0.00 0.00 0.00 2.44
1821 2310 0.887387 CGTCCCTTCCTCCGCAAAAA 60.887 55.000 0.00 0.00 0.00 1.94
1839 2328 2.640316 AAAAAGCTCTGTCGTCCCTT 57.360 45.000 0.00 0.00 0.00 3.95
1840 2329 2.171341 AAAAGCTCTGTCGTCCCTTC 57.829 50.000 0.00 0.00 0.00 3.46
1841 2330 0.321996 AAAGCTCTGTCGTCCCTTCC 59.678 55.000 0.00 0.00 0.00 3.46
1842 2331 1.878656 AAGCTCTGTCGTCCCTTCCG 61.879 60.000 0.00 0.00 0.00 4.30
1843 2332 2.182030 CTCTGTCGTCCCTTCCGC 59.818 66.667 0.00 0.00 0.00 5.54
1844 2333 3.685214 CTCTGTCGTCCCTTCCGCG 62.685 68.421 0.00 0.00 0.00 6.46
1857 2346 1.781429 CTTCCGCGTGTTCATCTATCG 59.219 52.381 4.92 0.00 0.00 2.92
1870 2359 2.273370 TCTATCGTTTGTGAGACGCC 57.727 50.000 0.00 0.00 40.16 5.68
1876 2365 1.142097 TTTGTGAGACGCCGACACA 59.858 52.632 10.85 10.85 41.70 3.72
1880 2369 2.190841 TGAGACGCCGACACAGACA 61.191 57.895 0.00 0.00 0.00 3.41
1914 2403 3.813724 ACAACTTCTTCGTTTTCTAGCCC 59.186 43.478 0.00 0.00 0.00 5.19
1933 2422 2.609459 CCCTTTTCTCATCAATCCGTCG 59.391 50.000 0.00 0.00 0.00 5.12
1951 2440 3.461773 GCTAGAGACGGCCCTGCA 61.462 66.667 0.00 0.00 0.00 4.41
1952 2441 2.801631 GCTAGAGACGGCCCTGCAT 61.802 63.158 0.00 0.00 0.00 3.96
1964 2453 2.490903 GGCCCTGCATATTGATGATGTC 59.509 50.000 0.00 0.00 34.73 3.06
1965 2454 2.161012 GCCCTGCATATTGATGATGTCG 59.839 50.000 0.00 0.00 34.73 4.35
1985 3809 3.695606 GCCTCTCAGCACCGGTGA 61.696 66.667 38.30 16.73 37.74 4.02
1999 3823 2.927004 GGTGAAGCCGTGAATCACA 58.073 52.632 14.24 0.00 44.05 3.58
2067 3894 3.893813 AGGGAGTAGATTTTATACCGCGT 59.106 43.478 4.92 0.00 0.00 6.01
2137 3964 4.368315 TGGTGCGACATATGTACTTCATC 58.632 43.478 8.71 5.53 37.91 2.92
2144 3971 4.621991 ACATATGTACTTCATCGAGCACC 58.378 43.478 6.56 0.00 37.91 5.01
2145 3972 4.099419 ACATATGTACTTCATCGAGCACCA 59.901 41.667 6.56 0.00 37.91 4.17
2166 3993 1.063649 CGGGTGGACTACATCGTCG 59.936 63.158 0.00 0.00 34.75 5.12
2172 3999 1.093159 GGACTACATCGTCGTGACCT 58.907 55.000 0.00 0.00 34.75 3.85
2173 4000 1.202154 GGACTACATCGTCGTGACCTG 60.202 57.143 0.00 0.00 34.75 4.00
2187 4014 2.168666 GACCTGGACAACTCCGACCC 62.169 65.000 0.00 0.00 39.88 4.46
2206 4033 1.141019 CATGGACACGTCTACCCGG 59.859 63.158 0.00 0.00 0.00 5.73
2215 4042 0.100861 CGTCTACCCGGAAAGCTCTC 59.899 60.000 0.73 0.00 0.00 3.20
2236 4063 3.981308 GCGCTCCTGCCAAGTTTA 58.019 55.556 0.00 0.00 35.36 2.01
2242 4069 0.947180 TCCTGCCAAGTTTACGCGAC 60.947 55.000 15.93 0.00 0.00 5.19
2252 4079 1.017177 TTTACGCGACTGCACCATCC 61.017 55.000 15.93 0.00 42.97 3.51
2256 4083 1.878522 GCGACTGCACCATCCGTAG 60.879 63.158 0.00 0.00 42.15 3.51
2257 4084 1.807226 CGACTGCACCATCCGTAGA 59.193 57.895 0.00 0.00 0.00 2.59
2258 4085 0.385751 CGACTGCACCATCCGTAGAT 59.614 55.000 0.00 0.00 0.00 1.98
2286 4122 2.432628 GACCTTCTGGCACGACGG 60.433 66.667 0.00 7.57 36.63 4.79
2302 4159 3.239253 GGGTGTGGGTGGAGACGT 61.239 66.667 0.00 0.00 0.00 4.34
2303 4160 2.814835 GGGTGTGGGTGGAGACGTT 61.815 63.158 0.00 0.00 0.00 3.99
2308 4165 2.047179 GGGTGGAGACGTTGGAGC 60.047 66.667 0.00 0.00 0.00 4.70
2311 4168 2.029844 GTGGAGACGTTGGAGCTGC 61.030 63.158 0.00 0.00 0.00 5.25
2327 4184 0.321122 CTGCGGTTCTTGGCTCTCTT 60.321 55.000 0.00 0.00 0.00 2.85
2382 4239 3.185246 ACTATTCTCCCGCACATTGAG 57.815 47.619 0.00 0.00 0.00 3.02
2401 4271 3.450043 AACCACTTTCCGCGGTCGT 62.450 57.895 27.15 17.33 30.91 4.34
2405 4275 3.118454 CTTTCCGCGGTCGTGCAT 61.118 61.111 27.15 0.00 34.15 3.96
2406 4276 3.367051 CTTTCCGCGGTCGTGCATG 62.367 63.158 27.15 0.00 34.15 4.06
2423 4293 3.501396 GCGCTGAGCTTGGCAATA 58.499 55.556 1.78 0.00 44.04 1.90
2430 4300 2.751259 CTGAGCTTGGCAATATGTGTGT 59.249 45.455 0.00 0.00 0.00 3.72
2431 4301 2.488937 TGAGCTTGGCAATATGTGTGTG 59.511 45.455 0.00 0.00 0.00 3.82
2432 4302 1.820519 AGCTTGGCAATATGTGTGTGG 59.179 47.619 0.00 0.00 0.00 4.17
2434 4304 2.415893 GCTTGGCAATATGTGTGTGGAC 60.416 50.000 0.00 0.00 0.00 4.02
2438 4308 1.737838 CAATATGTGTGTGGACGCCT 58.262 50.000 0.00 0.00 0.00 5.52
2497 4367 3.201342 CGCATCGGTGGAATAGAGG 57.799 57.895 0.00 0.00 0.00 3.69
2498 4368 0.389391 CGCATCGGTGGAATAGAGGT 59.611 55.000 0.00 0.00 0.00 3.85
2499 4369 1.869754 CGCATCGGTGGAATAGAGGTG 60.870 57.143 0.00 0.00 0.00 4.00
2500 4370 1.871080 CATCGGTGGAATAGAGGTGC 58.129 55.000 0.00 0.00 0.00 5.01
2501 4371 0.759346 ATCGGTGGAATAGAGGTGCC 59.241 55.000 0.00 0.00 0.00 5.01
2502 4372 0.325296 TCGGTGGAATAGAGGTGCCT 60.325 55.000 0.00 0.00 0.00 4.75
2503 4373 0.105039 CGGTGGAATAGAGGTGCCTC 59.895 60.000 10.12 10.12 43.03 4.70
2504 4374 0.470341 GGTGGAATAGAGGTGCCTCC 59.530 60.000 14.13 0.92 43.70 4.30
2505 4375 1.204146 GTGGAATAGAGGTGCCTCCA 58.796 55.000 14.13 1.55 43.70 3.86
2506 4376 1.134371 GTGGAATAGAGGTGCCTCCAC 60.134 57.143 14.13 11.70 46.70 4.02
2507 4377 1.204146 GGAATAGAGGTGCCTCCACA 58.796 55.000 14.13 1.47 43.88 4.17
2508 4378 1.139853 GGAATAGAGGTGCCTCCACAG 59.860 57.143 14.13 0.00 43.88 3.66
2509 4379 0.543749 AATAGAGGTGCCTCCACAGC 59.456 55.000 14.13 0.00 43.88 4.40
2510 4380 1.680522 ATAGAGGTGCCTCCACAGCG 61.681 60.000 14.13 0.00 43.88 5.18
2511 4381 4.008933 GAGGTGCCTCCACAGCGT 62.009 66.667 6.98 0.00 43.88 5.07
2512 4382 3.941657 GAGGTGCCTCCACAGCGTC 62.942 68.421 6.98 0.00 43.88 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.587772 TTCTTCCATCTTCTTCTAGTTTTATCG 57.412 33.333 0.00 0.00 0.00 2.92
18 19 7.016661 TGTCCTTCTTCCATCTTCTTCTAGTTT 59.983 37.037 0.00 0.00 0.00 2.66
40 41 5.759763 GGGGCATCAAATTGAATATTTGTCC 59.240 40.000 8.26 8.26 39.36 4.02
43 44 4.751098 CCGGGGCATCAAATTGAATATTTG 59.249 41.667 0.00 4.31 39.61 2.32
44 45 4.743348 GCCGGGGCATCAAATTGAATATTT 60.743 41.667 2.18 0.00 41.49 1.40
45 46 3.244181 GCCGGGGCATCAAATTGAATATT 60.244 43.478 2.18 0.00 41.49 1.28
50 51 1.000233 AGCCGGGGCATCAAATTGA 60.000 52.632 12.97 0.00 44.88 2.57
56 57 2.769621 AGATGAGCCGGGGCATCA 60.770 61.111 12.97 12.48 42.52 3.07
57 58 2.281345 CAGATGAGCCGGGGCATC 60.281 66.667 12.97 7.16 44.88 3.91
65 66 1.890979 CATCGGGTGCAGATGAGCC 60.891 63.158 8.38 0.00 46.09 4.70
129 132 8.526147 CATTGGAACATCTTTCACCTAATCTTT 58.474 33.333 0.00 0.00 39.30 2.52
130 133 7.363268 GCATTGGAACATCTTTCACCTAATCTT 60.363 37.037 0.00 0.00 39.30 2.40
131 134 6.096001 GCATTGGAACATCTTTCACCTAATCT 59.904 38.462 0.00 0.00 39.30 2.40
132 135 6.127647 TGCATTGGAACATCTTTCACCTAATC 60.128 38.462 0.00 0.00 39.30 1.75
133 136 5.716228 TGCATTGGAACATCTTTCACCTAAT 59.284 36.000 0.00 0.00 39.30 1.73
157 160 1.888512 ACAATTTGGCACGAGCATTCT 59.111 42.857 7.26 0.00 44.61 2.40
158 161 2.352503 ACAATTTGGCACGAGCATTC 57.647 45.000 7.26 0.00 44.61 2.67
159 162 3.696051 AGATACAATTTGGCACGAGCATT 59.304 39.130 7.26 0.00 44.61 3.56
163 166 4.685169 ACAAGATACAATTTGGCACGAG 57.315 40.909 0.78 0.00 0.00 4.18
186 189 3.368635 GCCATGAGCTCCTCAGATATCTG 60.369 52.174 24.32 24.32 44.08 2.90
187 190 2.833338 GCCATGAGCTCCTCAGATATCT 59.167 50.000 12.15 0.00 44.08 1.98
189 192 2.617658 TGCCATGAGCTCCTCAGATAT 58.382 47.619 12.15 0.00 44.08 1.63
190 193 2.092598 TGCCATGAGCTCCTCAGATA 57.907 50.000 12.15 0.00 44.08 1.98
236 239 7.865707 AGCTGTAAGAAAGTTTACTGTTCATG 58.134 34.615 0.00 0.00 35.88 3.07
237 240 7.173390 GGAGCTGTAAGAAAGTTTACTGTTCAT 59.827 37.037 15.64 0.91 40.77 2.57
238 241 6.482308 GGAGCTGTAAGAAAGTTTACTGTTCA 59.518 38.462 15.64 0.00 40.77 3.18
239 242 6.482308 TGGAGCTGTAAGAAAGTTTACTGTTC 59.518 38.462 0.00 9.48 39.58 3.18
280 284 7.121315 AGTTTGGATATTTTGGTAGCTCTCAAC 59.879 37.037 0.00 0.00 0.00 3.18
323 327 2.517450 GCTCATGTGCGCGTAGTCC 61.517 63.158 8.43 0.00 0.00 3.85
328 332 0.873312 CTAGATGCTCATGTGCGCGT 60.873 55.000 14.53 6.99 35.36 6.01
330 334 1.156034 TGCTAGATGCTCATGTGCGC 61.156 55.000 14.53 0.00 43.37 6.09
331 335 1.459975 GATGCTAGATGCTCATGTGCG 59.540 52.381 14.53 1.72 43.37 5.34
348 352 9.190858 TCAAAAACTCCGATTTTATTTGTGATG 57.809 29.630 0.00 0.00 31.50 3.07
390 398 7.393234 CACCCTAGATGAACAGGAAATTTGTTA 59.607 37.037 0.00 0.00 38.78 2.41
400 408 4.422073 TTATGCACCCTAGATGAACAGG 57.578 45.455 0.00 0.00 0.00 4.00
408 416 1.741055 CGGCGTTTTATGCACCCTAGA 60.741 52.381 0.00 0.00 0.00 2.43
411 419 2.696759 GCGGCGTTTTATGCACCCT 61.697 57.895 9.37 0.00 0.00 4.34
412 420 2.202557 GCGGCGTTTTATGCACCC 60.203 61.111 9.37 0.00 0.00 4.61
425 448 7.754027 TCTCTATTTTATATCTCTTTACGCGGC 59.246 37.037 12.47 0.00 0.00 6.53
476 919 9.897744 CTATCTAGCTTCTATCTTTTGTCTCTG 57.102 37.037 0.00 0.00 0.00 3.35
479 922 9.860650 TCTCTATCTAGCTTCTATCTTTTGTCT 57.139 33.333 0.00 0.00 0.00 3.41
556 1005 6.563196 CGTGTAGACGTCATCTCTATCTTCTG 60.563 46.154 19.50 0.00 40.91 3.02
557 1006 5.464057 CGTGTAGACGTCATCTCTATCTTCT 59.536 44.000 19.50 0.00 40.91 2.85
558 1007 5.333492 CCGTGTAGACGTCATCTCTATCTTC 60.333 48.000 19.50 0.00 44.54 2.87
559 1008 4.512198 CCGTGTAGACGTCATCTCTATCTT 59.488 45.833 19.50 0.00 44.54 2.40
560 1009 4.059511 CCGTGTAGACGTCATCTCTATCT 58.940 47.826 19.50 0.00 44.54 1.98
561 1010 3.364167 GCCGTGTAGACGTCATCTCTATC 60.364 52.174 19.50 0.00 44.54 2.08
562 1011 2.548904 GCCGTGTAGACGTCATCTCTAT 59.451 50.000 19.50 0.00 44.54 1.98
563 1012 1.938577 GCCGTGTAGACGTCATCTCTA 59.061 52.381 19.50 0.00 44.54 2.43
564 1013 0.733729 GCCGTGTAGACGTCATCTCT 59.266 55.000 19.50 0.00 44.54 3.10
565 1014 0.733729 AGCCGTGTAGACGTCATCTC 59.266 55.000 19.50 9.73 44.54 2.75
566 1015 0.452184 CAGCCGTGTAGACGTCATCT 59.548 55.000 19.50 0.00 44.54 2.90
567 1016 0.525668 CCAGCCGTGTAGACGTCATC 60.526 60.000 19.50 10.53 44.54 2.92
568 1017 0.963856 TCCAGCCGTGTAGACGTCAT 60.964 55.000 19.50 5.54 44.54 3.06
569 1018 1.583495 CTCCAGCCGTGTAGACGTCA 61.583 60.000 19.50 0.48 44.54 4.35
570 1019 1.136984 CTCCAGCCGTGTAGACGTC 59.863 63.158 7.70 7.70 44.54 4.34
571 1020 2.991076 GCTCCAGCCGTGTAGACGT 61.991 63.158 11.79 0.00 44.54 4.34
572 1021 2.202623 GCTCCAGCCGTGTAGACG 60.203 66.667 5.25 5.25 45.67 4.18
573 1022 1.651240 TACGCTCCAGCCGTGTAGAC 61.651 60.000 6.38 0.00 37.91 2.59
574 1023 1.377594 TACGCTCCAGCCGTGTAGA 60.378 57.895 6.38 0.00 37.91 2.59
575 1024 1.226603 GTACGCTCCAGCCGTGTAG 60.227 63.158 6.38 0.00 37.91 2.74
576 1025 2.879907 GTACGCTCCAGCCGTGTA 59.120 61.111 6.38 0.00 37.91 2.90
577 1026 4.415332 CGTACGCTCCAGCCGTGT 62.415 66.667 0.52 0.00 37.91 4.49
588 1037 0.388294 AAATCTCCCTAGCCGTACGC 59.612 55.000 10.49 5.63 37.98 4.42
589 1038 2.361438 AGAAAATCTCCCTAGCCGTACG 59.639 50.000 8.69 8.69 0.00 3.67
590 1039 4.261952 GGTAGAAAATCTCCCTAGCCGTAC 60.262 50.000 0.00 0.00 0.00 3.67
591 1040 3.893813 GGTAGAAAATCTCCCTAGCCGTA 59.106 47.826 0.00 0.00 0.00 4.02
592 1041 2.699321 GGTAGAAAATCTCCCTAGCCGT 59.301 50.000 0.00 0.00 0.00 5.68
593 1042 2.037381 GGGTAGAAAATCTCCCTAGCCG 59.963 54.545 0.00 0.00 40.03 5.52
594 1043 2.372504 GGGGTAGAAAATCTCCCTAGCC 59.627 54.545 0.00 0.00 45.43 3.93
595 1044 2.372504 GGGGGTAGAAAATCTCCCTAGC 59.627 54.545 11.91 0.00 35.50 3.42
596 1045 3.665443 TGGGGGTAGAAAATCTCCCTAG 58.335 50.000 11.91 0.00 35.50 3.02
597 1046 3.807288 TGGGGGTAGAAAATCTCCCTA 57.193 47.619 11.91 1.96 35.50 3.53
598 1047 2.680439 TGGGGGTAGAAAATCTCCCT 57.320 50.000 11.91 0.00 35.50 4.20
599 1048 2.158460 CCATGGGGGTAGAAAATCTCCC 60.158 54.545 2.85 0.00 34.86 4.30
600 1049 2.783510 TCCATGGGGGTAGAAAATCTCC 59.216 50.000 13.02 0.00 38.11 3.71
601 1050 4.401925 CATCCATGGGGGTAGAAAATCTC 58.598 47.826 13.02 0.00 38.11 2.75
602 1051 3.140895 CCATCCATGGGGGTAGAAAATCT 59.859 47.826 13.02 0.00 44.31 2.40
603 1052 3.500343 CCATCCATGGGGGTAGAAAATC 58.500 50.000 13.02 0.00 44.31 2.17
604 1053 3.618120 CCATCCATGGGGGTAGAAAAT 57.382 47.619 13.02 0.00 44.31 1.82
616 1065 1.105457 AAATCACACCGCCATCCATG 58.895 50.000 0.00 0.00 0.00 3.66
617 1066 2.575532 CTAAATCACACCGCCATCCAT 58.424 47.619 0.00 0.00 0.00 3.41
618 1067 1.408127 CCTAAATCACACCGCCATCCA 60.408 52.381 0.00 0.00 0.00 3.41
619 1068 1.308998 CCTAAATCACACCGCCATCC 58.691 55.000 0.00 0.00 0.00 3.51
620 1069 1.134220 TCCCTAAATCACACCGCCATC 60.134 52.381 0.00 0.00 0.00 3.51
621 1070 0.916086 TCCCTAAATCACACCGCCAT 59.084 50.000 0.00 0.00 0.00 4.40
622 1071 0.916086 ATCCCTAAATCACACCGCCA 59.084 50.000 0.00 0.00 0.00 5.69
623 1072 2.550208 CCTATCCCTAAATCACACCGCC 60.550 54.545 0.00 0.00 0.00 6.13
624 1073 2.367567 TCCTATCCCTAAATCACACCGC 59.632 50.000 0.00 0.00 0.00 5.68
625 1074 4.528596 AGATCCTATCCCTAAATCACACCG 59.471 45.833 0.00 0.00 0.00 4.94
626 1075 6.070710 GGTAGATCCTATCCCTAAATCACACC 60.071 46.154 0.00 0.00 0.00 4.16
627 1076 6.350277 CGGTAGATCCTATCCCTAAATCACAC 60.350 46.154 0.00 0.00 0.00 3.82
628 1077 5.715279 CGGTAGATCCTATCCCTAAATCACA 59.285 44.000 0.00 0.00 0.00 3.58
629 1078 5.715753 ACGGTAGATCCTATCCCTAAATCAC 59.284 44.000 0.00 0.00 0.00 3.06
630 1079 5.900437 ACGGTAGATCCTATCCCTAAATCA 58.100 41.667 0.00 0.00 0.00 2.57
631 1080 6.127394 GGAACGGTAGATCCTATCCCTAAATC 60.127 46.154 0.00 0.00 36.50 2.17
632 1081 5.720520 GGAACGGTAGATCCTATCCCTAAAT 59.279 44.000 0.00 0.00 36.50 1.40
633 1082 5.082425 GGAACGGTAGATCCTATCCCTAAA 58.918 45.833 0.00 0.00 36.50 1.85
634 1083 4.356190 AGGAACGGTAGATCCTATCCCTAA 59.644 45.833 0.00 0.00 46.28 2.69
635 1084 3.921486 AGGAACGGTAGATCCTATCCCTA 59.079 47.826 0.00 0.00 46.28 3.53
636 1085 2.723010 AGGAACGGTAGATCCTATCCCT 59.277 50.000 0.00 0.00 46.28 4.20
637 1086 3.172471 AGGAACGGTAGATCCTATCCC 57.828 52.381 0.00 0.00 46.28 3.85
643 1092 2.036089 CAGCCTAAGGAACGGTAGATCC 59.964 54.545 0.00 0.00 39.38 3.36
644 1093 2.036089 CCAGCCTAAGGAACGGTAGATC 59.964 54.545 0.00 0.00 0.00 2.75
645 1094 2.040178 CCAGCCTAAGGAACGGTAGAT 58.960 52.381 0.00 0.00 0.00 1.98
646 1095 1.006281 TCCAGCCTAAGGAACGGTAGA 59.994 52.381 0.00 0.00 30.71 2.59
647 1096 1.136500 GTCCAGCCTAAGGAACGGTAG 59.864 57.143 0.00 0.00 36.80 3.18
648 1097 1.188863 GTCCAGCCTAAGGAACGGTA 58.811 55.000 0.00 0.00 36.80 4.02
649 1098 0.834687 TGTCCAGCCTAAGGAACGGT 60.835 55.000 0.00 0.00 36.80 4.83
650 1099 0.391263 GTGTCCAGCCTAAGGAACGG 60.391 60.000 0.00 0.00 36.80 4.44
651 1100 0.736325 CGTGTCCAGCCTAAGGAACG 60.736 60.000 0.00 0.00 36.80 3.95
652 1101 0.606604 TCGTGTCCAGCCTAAGGAAC 59.393 55.000 0.00 0.00 36.80 3.62
653 1102 1.568504 ATCGTGTCCAGCCTAAGGAA 58.431 50.000 0.00 0.00 36.80 3.36
654 1103 1.568504 AATCGTGTCCAGCCTAAGGA 58.431 50.000 0.00 0.00 0.00 3.36
655 1104 2.403252 AAATCGTGTCCAGCCTAAGG 57.597 50.000 0.00 0.00 0.00 2.69
656 1105 4.260784 GCAATAAATCGTGTCCAGCCTAAG 60.261 45.833 0.00 0.00 0.00 2.18
657 1106 3.625764 GCAATAAATCGTGTCCAGCCTAA 59.374 43.478 0.00 0.00 0.00 2.69
658 1107 3.118408 AGCAATAAATCGTGTCCAGCCTA 60.118 43.478 0.00 0.00 0.00 3.93
659 1108 2.017049 GCAATAAATCGTGTCCAGCCT 58.983 47.619 0.00 0.00 0.00 4.58
660 1109 2.017049 AGCAATAAATCGTGTCCAGCC 58.983 47.619 0.00 0.00 0.00 4.85
661 1110 3.429085 CAAGCAATAAATCGTGTCCAGC 58.571 45.455 0.00 0.00 0.00 4.85
662 1111 3.731867 GCCAAGCAATAAATCGTGTCCAG 60.732 47.826 0.00 0.00 0.00 3.86
663 1112 2.163412 GCCAAGCAATAAATCGTGTCCA 59.837 45.455 0.00 0.00 0.00 4.02
664 1113 2.163412 TGCCAAGCAATAAATCGTGTCC 59.837 45.455 0.00 0.00 34.76 4.02
665 1114 3.485947 TGCCAAGCAATAAATCGTGTC 57.514 42.857 0.00 0.00 34.76 3.67
666 1115 4.175516 CAATGCCAAGCAATAAATCGTGT 58.824 39.130 0.00 0.00 43.62 4.49
667 1116 4.175516 ACAATGCCAAGCAATAAATCGTG 58.824 39.130 0.00 0.00 43.62 4.35
668 1117 4.454728 ACAATGCCAAGCAATAAATCGT 57.545 36.364 0.00 0.00 43.62 3.73
669 1118 6.207928 TGATACAATGCCAAGCAATAAATCG 58.792 36.000 0.00 0.00 43.62 3.34
670 1119 8.422973 TTTGATACAATGCCAAGCAATAAATC 57.577 30.769 0.00 0.00 43.62 2.17
671 1120 8.967664 ATTTGATACAATGCCAAGCAATAAAT 57.032 26.923 0.00 0.00 43.62 1.40
672 1121 8.789825 AATTTGATACAATGCCAAGCAATAAA 57.210 26.923 0.00 0.00 43.62 1.40
675 1124 8.967664 AATAATTTGATACAATGCCAAGCAAT 57.032 26.923 0.00 0.00 43.62 3.56
676 1125 8.789825 AAATAATTTGATACAATGCCAAGCAA 57.210 26.923 0.00 0.00 43.62 3.91
677 1126 8.789825 AAAATAATTTGATACAATGCCAAGCA 57.210 26.923 0.00 0.00 44.86 3.91
697 1146 9.528489 AGTTCAGAGCACCCTAAAAATAAAATA 57.472 29.630 0.00 0.00 0.00 1.40
698 1147 8.422577 AGTTCAGAGCACCCTAAAAATAAAAT 57.577 30.769 0.00 0.00 0.00 1.82
699 1148 7.833285 AGTTCAGAGCACCCTAAAAATAAAA 57.167 32.000 0.00 0.00 0.00 1.52
700 1149 7.833285 AAGTTCAGAGCACCCTAAAAATAAA 57.167 32.000 0.00 0.00 0.00 1.40
701 1150 7.833285 AAAGTTCAGAGCACCCTAAAAATAA 57.167 32.000 0.00 0.00 0.00 1.40
702 1151 7.833285 AAAAGTTCAGAGCACCCTAAAAATA 57.167 32.000 0.00 0.00 0.00 1.40
703 1152 6.731292 AAAAGTTCAGAGCACCCTAAAAAT 57.269 33.333 0.00 0.00 0.00 1.82
704 1153 6.337356 CAAAAAGTTCAGAGCACCCTAAAAA 58.663 36.000 0.00 0.00 0.00 1.94
705 1154 5.163457 CCAAAAAGTTCAGAGCACCCTAAAA 60.163 40.000 0.00 0.00 0.00 1.52
706 1155 4.340950 CCAAAAAGTTCAGAGCACCCTAAA 59.659 41.667 0.00 0.00 0.00 1.85
707 1156 3.888930 CCAAAAAGTTCAGAGCACCCTAA 59.111 43.478 0.00 0.00 0.00 2.69
708 1157 3.486383 CCAAAAAGTTCAGAGCACCCTA 58.514 45.455 0.00 0.00 0.00 3.53
709 1158 2.310538 CCAAAAAGTTCAGAGCACCCT 58.689 47.619 0.00 0.00 0.00 4.34
710 1159 1.269778 GCCAAAAAGTTCAGAGCACCC 60.270 52.381 0.00 0.00 0.00 4.61
711 1160 1.683385 AGCCAAAAAGTTCAGAGCACC 59.317 47.619 0.00 0.00 0.00 5.01
712 1161 2.099756 ACAGCCAAAAAGTTCAGAGCAC 59.900 45.455 0.00 0.00 0.00 4.40
713 1162 2.099592 CACAGCCAAAAAGTTCAGAGCA 59.900 45.455 0.00 0.00 0.00 4.26
714 1163 2.099756 ACACAGCCAAAAAGTTCAGAGC 59.900 45.455 0.00 0.00 0.00 4.09
715 1164 3.699067 CACACAGCCAAAAAGTTCAGAG 58.301 45.455 0.00 0.00 0.00 3.35
716 1165 2.159254 GCACACAGCCAAAAAGTTCAGA 60.159 45.455 0.00 0.00 37.23 3.27
717 1166 2.195922 GCACACAGCCAAAAAGTTCAG 58.804 47.619 0.00 0.00 37.23 3.02
718 1167 1.547820 TGCACACAGCCAAAAAGTTCA 59.452 42.857 0.00 0.00 44.83 3.18
719 1168 2.292103 TGCACACAGCCAAAAAGTTC 57.708 45.000 0.00 0.00 44.83 3.01
720 1169 2.431782 AGATGCACACAGCCAAAAAGTT 59.568 40.909 0.00 0.00 44.83 2.66
721 1170 2.034124 AGATGCACACAGCCAAAAAGT 58.966 42.857 0.00 0.00 44.83 2.66
722 1171 2.806608 AGATGCACACAGCCAAAAAG 57.193 45.000 0.00 0.00 44.83 2.27
723 1172 2.030007 GCTAGATGCACACAGCCAAAAA 60.030 45.455 0.00 0.00 44.83 1.94
724 1173 1.541147 GCTAGATGCACACAGCCAAAA 59.459 47.619 0.00 0.00 44.83 2.44
725 1174 1.167851 GCTAGATGCACACAGCCAAA 58.832 50.000 0.00 0.00 44.83 3.28
726 1175 0.325933 AGCTAGATGCACACAGCCAA 59.674 50.000 10.69 0.00 45.94 4.52
727 1176 1.194218 TAGCTAGATGCACACAGCCA 58.806 50.000 10.69 0.00 45.94 4.75
728 1177 2.141517 CATAGCTAGATGCACACAGCC 58.858 52.381 10.69 0.00 45.94 4.85
737 1186 2.094803 CCGACCTCTGCATAGCTAGATG 60.095 54.545 0.00 0.00 0.00 2.90
738 1187 2.166829 CCGACCTCTGCATAGCTAGAT 58.833 52.381 0.00 0.00 0.00 1.98
739 1188 1.610363 CCGACCTCTGCATAGCTAGA 58.390 55.000 0.00 0.00 0.00 2.43
740 1189 0.600557 CCCGACCTCTGCATAGCTAG 59.399 60.000 0.00 0.00 0.00 3.42
741 1190 1.464376 GCCCGACCTCTGCATAGCTA 61.464 60.000 0.00 0.00 0.00 3.32
742 1191 2.801631 GCCCGACCTCTGCATAGCT 61.802 63.158 0.00 0.00 0.00 3.32
743 1192 2.280457 GCCCGACCTCTGCATAGC 60.280 66.667 0.00 0.00 0.00 2.97
744 1193 0.179000 AAAGCCCGACCTCTGCATAG 59.821 55.000 0.00 0.00 0.00 2.23
745 1194 0.178068 GAAAGCCCGACCTCTGCATA 59.822 55.000 0.00 0.00 0.00 3.14
746 1195 1.078143 GAAAGCCCGACCTCTGCAT 60.078 57.895 0.00 0.00 0.00 3.96
747 1196 1.768684 AAGAAAGCCCGACCTCTGCA 61.769 55.000 0.00 0.00 0.00 4.41
748 1197 0.606673 AAAGAAAGCCCGACCTCTGC 60.607 55.000 0.00 0.00 0.00 4.26
749 1198 1.443802 GAAAGAAAGCCCGACCTCTG 58.556 55.000 0.00 0.00 0.00 3.35
750 1199 0.037232 CGAAAGAAAGCCCGACCTCT 60.037 55.000 0.00 0.00 0.00 3.69
751 1200 0.037605 TCGAAAGAAAGCCCGACCTC 60.038 55.000 0.00 0.00 37.03 3.85
752 1201 2.055299 TCGAAAGAAAGCCCGACCT 58.945 52.632 0.00 0.00 37.03 3.85
753 1202 4.687464 TCGAAAGAAAGCCCGACC 57.313 55.556 0.00 0.00 37.03 4.79
764 1213 5.859114 CGAGGTGATACAATCCTATCGAAAG 59.141 44.000 0.00 0.00 0.00 2.62
765 1214 5.533528 TCGAGGTGATACAATCCTATCGAAA 59.466 40.000 0.00 0.00 29.28 3.46
766 1215 5.067954 TCGAGGTGATACAATCCTATCGAA 58.932 41.667 0.00 0.00 29.28 3.71
767 1216 4.648651 TCGAGGTGATACAATCCTATCGA 58.351 43.478 0.00 0.00 0.00 3.59
768 1217 5.568685 ATCGAGGTGATACAATCCTATCG 57.431 43.478 0.00 0.00 34.83 2.92
794 1243 9.830975 TCGATAAAGGACATTTCATTGAATAGA 57.169 29.630 0.00 0.00 32.01 1.98
798 1247 9.973450 TTTTTCGATAAAGGACATTTCATTGAA 57.027 25.926 0.00 0.00 32.01 2.69
799 1248 9.624697 CTTTTTCGATAAAGGACATTTCATTGA 57.375 29.630 17.56 0.00 32.67 2.57
800 1249 9.624697 TCTTTTTCGATAAAGGACATTTCATTG 57.375 29.630 22.74 0.36 36.12 2.82
802 1251 9.846248 CTTCTTTTTCGATAAAGGACATTTCAT 57.154 29.630 22.74 0.00 36.12 2.57
803 1252 9.062524 TCTTCTTTTTCGATAAAGGACATTTCA 57.937 29.630 22.74 3.96 36.12 2.69
804 1253 9.331106 GTCTTCTTTTTCGATAAAGGACATTTC 57.669 33.333 22.74 8.37 36.12 2.17
805 1254 8.846211 TGTCTTCTTTTTCGATAAAGGACATTT 58.154 29.630 23.28 0.00 34.40 2.32
806 1255 8.391075 TGTCTTCTTTTTCGATAAAGGACATT 57.609 30.769 23.28 0.00 34.40 2.71
807 1256 7.878127 TCTGTCTTCTTTTTCGATAAAGGACAT 59.122 33.333 25.28 0.00 36.56 3.06
808 1257 7.214381 TCTGTCTTCTTTTTCGATAAAGGACA 58.786 34.615 24.38 24.38 35.67 4.02
809 1258 7.653767 TCTGTCTTCTTTTTCGATAAAGGAC 57.346 36.000 22.74 21.39 36.12 3.85
810 1259 8.148351 TCTTCTGTCTTCTTTTTCGATAAAGGA 58.852 33.333 22.74 16.23 36.12 3.36
811 1260 8.311650 TCTTCTGTCTTCTTTTTCGATAAAGG 57.688 34.615 22.74 11.62 36.12 3.11
945 1394 7.813148 TGTCCAAACGTTCAATTTTAGTTCAAA 59.187 29.630 0.00 0.00 0.00 2.69
950 1399 6.262601 CACTGTCCAAACGTTCAATTTTAGT 58.737 36.000 0.00 0.00 0.00 2.24
1005 1455 4.096231 CGAATGTTTGCTCCATGGTTCATA 59.904 41.667 12.58 3.54 0.00 2.15
1061 1511 3.350219 AGAGGTGATGTGCGGTATTTT 57.650 42.857 0.00 0.00 0.00 1.82
1062 1512 3.350219 AAGAGGTGATGTGCGGTATTT 57.650 42.857 0.00 0.00 0.00 1.40
1091 1541 4.701956 AAGGATCAAAAGTAATGTGCGG 57.298 40.909 0.00 0.00 0.00 5.69
1092 1542 6.422776 ACTAAGGATCAAAAGTAATGTGCG 57.577 37.500 0.00 0.00 0.00 5.34
1188 1647 1.236616 TTGCACATCCAAGACAGGCG 61.237 55.000 0.00 0.00 0.00 5.52
1229 1694 9.097257 CCAGCAATTTATTTCCGAATTAAACAT 57.903 29.630 9.36 2.11 0.00 2.71
1235 1700 5.343307 AGCCAGCAATTTATTTCCGAATT 57.657 34.783 0.00 0.00 0.00 2.17
1282 1769 6.623549 CGTTGATGCTTTCACCTGATTAACAT 60.624 38.462 0.00 0.00 32.84 2.71
1342 1829 3.375647 TGGTCTTTATAACAAGGGGGC 57.624 47.619 0.00 0.00 0.00 5.80
1373 1860 3.825585 TGACAACAATATTGCAGGCTTGA 59.174 39.130 15.48 0.00 0.00 3.02
1402 1889 4.831155 CCGAGGTCTACCCAACATATCTTA 59.169 45.833 0.00 0.00 36.42 2.10
1404 1891 3.231818 CCGAGGTCTACCCAACATATCT 58.768 50.000 0.00 0.00 36.42 1.98
1418 1905 0.744771 GTGAAGCATTCCCCGAGGTC 60.745 60.000 0.00 0.00 46.93 3.85
1423 1910 1.068333 CAGTTTGTGAAGCATTCCCCG 60.068 52.381 0.00 0.00 46.93 5.73
1526 2015 3.537337 TGATTATCCCGGGACCCATAAT 58.463 45.455 29.69 24.80 0.00 1.28
1580 2069 3.181487 CGGCGGATCAAATTTCTGGAATT 60.181 43.478 0.00 0.00 39.63 2.17
1581 2070 2.358898 CGGCGGATCAAATTTCTGGAAT 59.641 45.455 0.00 0.00 0.00 3.01
1585 2074 2.919666 AACGGCGGATCAAATTTCTG 57.080 45.000 13.24 0.00 0.00 3.02
1631 2120 0.793104 GTGCAATTACGGAGCGCAAC 60.793 55.000 11.47 2.54 38.56 4.17
1641 2130 6.995511 TGTAACCAATCTAGGTGCAATTAC 57.004 37.500 0.00 0.00 42.25 1.89
1643 2132 7.998383 TGATATGTAACCAATCTAGGTGCAATT 59.002 33.333 0.00 0.00 42.25 2.32
1647 2136 7.986085 AATGATATGTAACCAATCTAGGTGC 57.014 36.000 0.00 0.00 42.25 5.01
1676 2165 7.094890 CAGCATGGAGATGAAAGTATGGAATAC 60.095 40.741 0.00 0.00 42.52 1.89
1678 2167 5.768662 CAGCATGGAGATGAAAGTATGGAAT 59.231 40.000 0.00 0.00 35.00 3.01
1700 2189 2.425143 TGGGAGAGCAATTAAGCCAG 57.575 50.000 0.00 0.00 34.23 4.85
1737 2226 4.532126 ACAGAGATCCATGACTACCACAAA 59.468 41.667 0.00 0.00 0.00 2.83
1738 2227 4.096681 ACAGAGATCCATGACTACCACAA 58.903 43.478 0.00 0.00 0.00 3.33
1740 2229 4.688021 GAACAGAGATCCATGACTACCAC 58.312 47.826 0.00 0.00 0.00 4.16
1742 2231 3.243569 CCGAACAGAGATCCATGACTACC 60.244 52.174 0.00 0.00 0.00 3.18
1744 2233 3.632333 ACCGAACAGAGATCCATGACTA 58.368 45.455 0.00 0.00 0.00 2.59
1751 2240 2.034053 CAGAGCTACCGAACAGAGATCC 59.966 54.545 0.00 0.00 0.00 3.36
1756 2245 0.803117 CGACAGAGCTACCGAACAGA 59.197 55.000 0.00 0.00 0.00 3.41
1758 2247 0.520404 GACGACAGAGCTACCGAACA 59.480 55.000 0.00 0.00 0.00 3.18
1759 2248 0.179169 GGACGACAGAGCTACCGAAC 60.179 60.000 0.00 0.00 0.00 3.95
1760 2249 1.310933 GGGACGACAGAGCTACCGAA 61.311 60.000 0.00 0.00 0.00 4.30
1761 2250 1.748122 GGGACGACAGAGCTACCGA 60.748 63.158 0.00 0.00 0.00 4.69
1762 2251 1.313812 AAGGGACGACAGAGCTACCG 61.314 60.000 0.00 0.00 0.00 4.02
1763 2252 0.456628 GAAGGGACGACAGAGCTACC 59.543 60.000 0.00 0.00 0.00 3.18
1764 2253 0.456628 GGAAGGGACGACAGAGCTAC 59.543 60.000 0.00 0.00 0.00 3.58
1765 2254 0.331954 AGGAAGGGACGACAGAGCTA 59.668 55.000 0.00 0.00 0.00 3.32
1766 2255 0.968393 GAGGAAGGGACGACAGAGCT 60.968 60.000 0.00 0.00 0.00 4.09
1767 2256 1.513622 GAGGAAGGGACGACAGAGC 59.486 63.158 0.00 0.00 0.00 4.09
1768 2257 1.324005 GGGAGGAAGGGACGACAGAG 61.324 65.000 0.00 0.00 0.00 3.35
1769 2258 1.305046 GGGAGGAAGGGACGACAGA 60.305 63.158 0.00 0.00 0.00 3.41
1770 2259 1.192146 TTGGGAGGAAGGGACGACAG 61.192 60.000 0.00 0.00 0.00 3.51
1771 2260 0.765135 TTTGGGAGGAAGGGACGACA 60.765 55.000 0.00 0.00 0.00 4.35
1772 2261 0.399075 TTTTGGGAGGAAGGGACGAC 59.601 55.000 0.00 0.00 0.00 4.34
1773 2262 1.142060 TTTTTGGGAGGAAGGGACGA 58.858 50.000 0.00 0.00 0.00 4.20
1774 2263 3.737702 TTTTTGGGAGGAAGGGACG 57.262 52.632 0.00 0.00 0.00 4.79
1790 2279 2.361119 GGAAGGGACGACAAAGCTTTTT 59.639 45.455 9.53 2.46 0.00 1.94
1791 2280 1.954382 GGAAGGGACGACAAAGCTTTT 59.046 47.619 9.53 1.05 0.00 2.27
1792 2281 1.143073 AGGAAGGGACGACAAAGCTTT 59.857 47.619 5.69 5.69 0.00 3.51
1793 2282 0.765510 AGGAAGGGACGACAAAGCTT 59.234 50.000 0.00 0.00 0.00 3.74
1794 2283 0.321996 GAGGAAGGGACGACAAAGCT 59.678 55.000 0.00 0.00 0.00 3.74
1795 2284 0.673956 GGAGGAAGGGACGACAAAGC 60.674 60.000 0.00 0.00 0.00 3.51
1796 2285 0.389948 CGGAGGAAGGGACGACAAAG 60.390 60.000 0.00 0.00 0.00 2.77
1797 2286 1.669440 CGGAGGAAGGGACGACAAA 59.331 57.895 0.00 0.00 0.00 2.83
1798 2287 2.939261 GCGGAGGAAGGGACGACAA 61.939 63.158 0.00 0.00 0.00 3.18
1799 2288 3.379445 GCGGAGGAAGGGACGACA 61.379 66.667 0.00 0.00 0.00 4.35
1800 2289 2.444700 TTTGCGGAGGAAGGGACGAC 62.445 60.000 0.00 0.00 40.30 4.34
1801 2290 1.760479 TTTTGCGGAGGAAGGGACGA 61.760 55.000 0.00 0.00 40.30 4.20
1802 2291 0.887387 TTTTTGCGGAGGAAGGGACG 60.887 55.000 0.00 0.00 40.30 4.79
1803 2292 3.030415 TTTTTGCGGAGGAAGGGAC 57.970 52.632 0.00 0.00 40.30 4.46
1820 2309 2.495084 GAAGGGACGACAGAGCTTTTT 58.505 47.619 0.00 0.00 0.00 1.94
1821 2310 1.270893 GGAAGGGACGACAGAGCTTTT 60.271 52.381 0.00 0.00 0.00 2.27
1822 2311 0.321996 GGAAGGGACGACAGAGCTTT 59.678 55.000 0.00 0.00 0.00 3.51
1823 2312 1.878656 CGGAAGGGACGACAGAGCTT 61.879 60.000 0.00 0.00 0.00 3.74
1824 2313 2.344203 CGGAAGGGACGACAGAGCT 61.344 63.158 0.00 0.00 0.00 4.09
1825 2314 2.182030 CGGAAGGGACGACAGAGC 59.818 66.667 0.00 0.00 0.00 4.09
1826 2315 2.182030 GCGGAAGGGACGACAGAG 59.818 66.667 0.00 0.00 0.00 3.35
1836 2325 2.128035 GATAGATGAACACGCGGAAGG 58.872 52.381 12.47 0.00 0.00 3.46
1837 2326 1.781429 CGATAGATGAACACGCGGAAG 59.219 52.381 12.47 1.86 39.76 3.46
1838 2327 1.133598 ACGATAGATGAACACGCGGAA 59.866 47.619 12.47 0.00 41.38 4.30
1839 2328 0.736636 ACGATAGATGAACACGCGGA 59.263 50.000 12.47 0.00 41.38 5.54
1840 2329 1.556564 AACGATAGATGAACACGCGG 58.443 50.000 12.47 1.27 41.38 6.46
1841 2330 2.344441 ACAAACGATAGATGAACACGCG 59.656 45.455 3.53 3.53 41.38 6.01
1842 2331 3.366724 TCACAAACGATAGATGAACACGC 59.633 43.478 0.00 0.00 41.38 5.34
1843 2332 4.857037 TCTCACAAACGATAGATGAACACG 59.143 41.667 0.00 0.00 41.38 4.49
1844 2333 5.220043 CGTCTCACAAACGATAGATGAACAC 60.220 44.000 0.00 0.00 42.62 3.32
1857 2346 1.149361 TGTGTCGGCGTCTCACAAAC 61.149 55.000 23.30 8.13 38.80 2.93
1870 2359 1.432514 CAAGGGATGTGTCTGTGTCG 58.567 55.000 0.00 0.00 0.00 4.35
1876 2365 2.979678 AGTTGTACCAAGGGATGTGTCT 59.020 45.455 0.00 0.00 0.00 3.41
1880 2369 4.652822 GAAGAAGTTGTACCAAGGGATGT 58.347 43.478 0.00 0.00 0.00 3.06
1898 2387 4.969484 AGAAAAGGGCTAGAAAACGAAGA 58.031 39.130 0.00 0.00 0.00 2.87
1899 2388 4.755123 TGAGAAAAGGGCTAGAAAACGAAG 59.245 41.667 0.00 0.00 0.00 3.79
1902 2391 4.695455 TGATGAGAAAAGGGCTAGAAAACG 59.305 41.667 0.00 0.00 0.00 3.60
1914 2403 2.030946 GCCGACGGATTGATGAGAAAAG 59.969 50.000 20.50 0.00 0.00 2.27
1951 2440 5.011431 TGAGAGGCTTCGACATCATCAATAT 59.989 40.000 0.00 0.00 0.00 1.28
1952 2441 4.342092 TGAGAGGCTTCGACATCATCAATA 59.658 41.667 0.00 0.00 0.00 1.90
1964 2453 2.507992 CGGTGCTGAGAGGCTTCG 60.508 66.667 0.00 0.00 0.00 3.79
1965 2454 2.125350 CCGGTGCTGAGAGGCTTC 60.125 66.667 0.00 0.00 0.00 3.86
2005 3829 3.249189 ATCATATGGGCCGGCCGT 61.249 61.111 38.22 30.18 36.85 5.68
2067 3894 6.155393 TGACATACATATGGACAAGTACCACA 59.845 38.462 7.80 0.00 40.36 4.17
2120 3947 4.380087 GTGCTCGATGAAGTACATATGTCG 59.620 45.833 12.68 8.04 39.56 4.35
2122 3949 4.099419 TGGTGCTCGATGAAGTACATATGT 59.901 41.667 13.93 13.93 39.56 2.29
2126 3953 2.233676 TGTGGTGCTCGATGAAGTACAT 59.766 45.455 0.00 0.00 42.47 2.29
2144 3971 0.457853 CGATGTAGTCCACCCGTGTG 60.458 60.000 0.00 0.00 42.39 3.82
2145 3972 0.896940 ACGATGTAGTCCACCCGTGT 60.897 55.000 0.00 0.00 35.17 4.49
2166 3993 0.319641 GTCGGAGTTGTCCAGGTCAC 60.320 60.000 0.00 0.00 44.18 3.67
2172 3999 1.537889 ATGGGGTCGGAGTTGTCCA 60.538 57.895 0.00 0.00 44.18 4.02
2173 4000 1.078426 CATGGGGTCGGAGTTGTCC 60.078 63.158 0.00 0.00 39.88 4.02
2187 4014 1.141019 CGGGTAGACGTGTCCATGG 59.859 63.158 4.97 4.97 0.00 3.66
2206 4033 1.813337 GAGCGCCAGGAGAGCTTTC 60.813 63.158 2.29 0.00 41.84 2.62
2229 4056 0.110823 GGTGCAGTCGCGTAAACTTG 60.111 55.000 5.77 0.00 42.97 3.16
2231 4058 0.320421 ATGGTGCAGTCGCGTAAACT 60.320 50.000 5.77 0.00 42.97 2.66
2286 4122 1.597027 CAACGTCTCCACCCACACC 60.597 63.158 0.00 0.00 0.00 4.16
2294 4130 2.343758 GCAGCTCCAACGTCTCCA 59.656 61.111 0.00 0.00 0.00 3.86
2302 4159 1.600636 CCAAGAACCGCAGCTCCAA 60.601 57.895 0.00 0.00 0.00 3.53
2303 4160 2.032528 CCAAGAACCGCAGCTCCA 59.967 61.111 0.00 0.00 0.00 3.86
2308 4165 0.321122 AAGAGAGCCAAGAACCGCAG 60.321 55.000 0.00 0.00 0.00 5.18
2311 4168 1.273606 TGAGAAGAGAGCCAAGAACCG 59.726 52.381 0.00 0.00 0.00 4.44
2327 4184 2.741092 GGCGGTTGGAGTGTGAGA 59.259 61.111 0.00 0.00 0.00 3.27
2353 4210 1.737793 CGGGAGAATAGTTGCAACACC 59.262 52.381 30.11 20.21 0.00 4.16
2401 4271 3.436924 CCAAGCTCAGCGCATGCA 61.437 61.111 19.57 0.00 46.23 3.96
2405 4275 0.749091 ATATTGCCAAGCTCAGCGCA 60.749 50.000 11.47 0.00 42.61 6.09
2406 4276 0.317603 CATATTGCCAAGCTCAGCGC 60.318 55.000 0.00 0.00 39.57 5.92
2423 4293 2.669569 GCAGGCGTCCACACACAT 60.670 61.111 0.00 0.00 0.00 3.21
2485 4355 0.470341 GGAGGCACCTCTATTCCACC 59.530 60.000 16.08 0.00 42.38 4.61
2486 4356 1.204146 TGGAGGCACCTCTATTCCAC 58.796 55.000 16.08 0.00 42.38 4.02
2487 4357 1.204146 GTGGAGGCACCTCTATTCCA 58.796 55.000 16.08 3.68 42.38 3.53
2488 4358 1.139853 CTGTGGAGGCACCTCTATTCC 59.860 57.143 16.08 0.94 42.38 3.01
2489 4359 1.474143 GCTGTGGAGGCACCTCTATTC 60.474 57.143 16.08 0.59 42.38 1.75
2490 4360 0.543749 GCTGTGGAGGCACCTCTATT 59.456 55.000 16.08 0.00 42.38 1.73
2491 4361 1.680522 CGCTGTGGAGGCACCTCTAT 61.681 60.000 16.08 0.00 42.38 1.98
2492 4362 2.351244 CGCTGTGGAGGCACCTCTA 61.351 63.158 16.08 7.69 42.38 2.43
2493 4363 3.699894 CGCTGTGGAGGCACCTCT 61.700 66.667 16.08 0.00 42.38 3.69
2494 4364 3.941657 GACGCTGTGGAGGCACCTC 62.942 68.421 8.26 8.26 42.04 3.85
2495 4365 4.008933 GACGCTGTGGAGGCACCT 62.009 66.667 1.84 0.00 39.86 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.