Multiple sequence alignment - TraesCS3B01G596800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G596800 chr3B 100.000 3847 0 0 1 3847 819521398 819525244 0.000000e+00 7105.0
1 TraesCS3B01G596800 chr3B 96.745 1567 47 2 1 1564 819649048 819650613 0.000000e+00 2608.0
2 TraesCS3B01G596800 chr3B 91.094 1920 150 14 1563 3478 819382157 819384059 0.000000e+00 2579.0
3 TraesCS3B01G596800 chr3B 95.702 1489 57 4 1588 3074 819299951 819301434 0.000000e+00 2388.0
4 TraesCS3B01G596800 chr3B 92.243 1534 107 6 1563 3093 819651055 819652579 0.000000e+00 2163.0
5 TraesCS3B01G596800 chr3B 89.083 1548 136 21 1 1535 819380362 819381889 0.000000e+00 1892.0
6 TraesCS3B01G596800 chr3B 83.249 1582 219 17 1566 3125 819740857 819742414 0.000000e+00 1411.0
7 TraesCS3B01G596800 chr3B 96.021 578 19 2 920 1493 819298075 819298652 0.000000e+00 937.0
8 TraesCS3B01G596800 chr3B 91.501 553 40 7 1 551 819296051 819296598 0.000000e+00 754.0
9 TraesCS3B01G596800 chr3B 93.349 421 18 5 3062 3478 819302169 819302583 7.060000e-172 614.0
10 TraesCS3B01G596800 chr3B 87.406 532 60 6 959 1484 819740033 819740563 4.250000e-169 604.0
11 TraesCS3B01G596800 chr3B 92.453 371 26 2 3478 3847 533683598 533683967 2.630000e-146 529.0
12 TraesCS3B01G596800 chr3B 90.633 395 36 1 3084 3478 819653107 819653500 1.220000e-144 523.0
13 TraesCS3B01G596800 chr3B 91.914 371 28 2 3478 3847 740863667 740863298 5.700000e-143 518.0
14 TraesCS3B01G596800 chr3B 79.730 148 24 5 658 803 752142770 752142913 6.800000e-18 102.0
15 TraesCS3B01G596800 chr3A 90.126 1590 140 6 1891 3478 742313762 742315336 0.000000e+00 2050.0
16 TraesCS3B01G596800 chr3A 87.834 1496 133 18 1 1487 742331293 742332748 0.000000e+00 1709.0
17 TraesCS3B01G596800 chr3A 88.584 1349 125 12 2135 3478 742333342 742334666 0.000000e+00 1611.0
18 TraesCS3B01G596800 chr3A 85.542 1162 147 17 1696 2850 742872387 742871240 0.000000e+00 1195.0
19 TraesCS3B01G596800 chr3A 92.212 565 43 1 1590 2153 742332766 742333330 0.000000e+00 798.0
20 TraesCS3B01G596800 chr3A 88.871 629 43 15 616 1236 742277392 742278001 0.000000e+00 749.0
21 TraesCS3B01G596800 chr3A 88.994 527 56 2 959 1484 742355389 742355914 0.000000e+00 651.0
22 TraesCS3B01G596800 chr3A 83.333 564 79 9 1 559 742274969 742275522 1.230000e-139 507.0
23 TraesCS3B01G596800 chr3D 92.135 1424 102 6 1562 2980 608951869 608953287 0.000000e+00 2001.0
24 TraesCS3B01G596800 chr3D 89.002 1573 125 22 1 1564 608949919 608951452 0.000000e+00 1903.0
25 TraesCS3B01G596800 chr3D 88.766 1540 123 24 1 1530 608980301 608981800 0.000000e+00 1840.0
26 TraesCS3B01G596800 chr3D 83.650 1633 216 20 1566 3178 609005400 609007001 0.000000e+00 1489.0
27 TraesCS3B01G596800 chr3D 85.212 1251 173 9 1696 2944 609286678 609285438 0.000000e+00 1275.0
28 TraesCS3B01G596800 chr3D 88.368 533 54 5 959 1484 609004575 609005106 5.420000e-178 634.0
29 TraesCS3B01G596800 chr1B 93.817 372 21 2 3477 3847 508529939 508529569 3.360000e-155 558.0
30 TraesCS3B01G596800 chr1B 86.000 150 19 2 1 148 252971737 252971886 3.980000e-35 159.0
31 TraesCS3B01G596800 chr7B 92.267 375 24 4 3474 3847 119873207 119872837 9.470000e-146 527.0
32 TraesCS3B01G596800 chr7B 91.644 371 27 3 3478 3847 143259848 143260215 9.530000e-141 510.0
33 TraesCS3B01G596800 chr7B 91.644 371 27 4 3478 3847 428120789 428121156 9.530000e-141 510.0
34 TraesCS3B01G596800 chr7B 81.333 75 11 3 297 369 221894891 221894964 1.490000e-04 58.4
35 TraesCS3B01G596800 chr2D 91.644 371 27 3 3478 3847 629926525 629926892 9.530000e-141 510.0
36 TraesCS3B01G596800 chr2D 78.022 182 28 9 628 803 11617748 11617573 1.890000e-18 104.0
37 TraesCS3B01G596800 chr2B 91.622 370 28 2 3478 3847 655638628 655638994 3.430000e-140 508.0
38 TraesCS3B01G596800 chr4A 91.375 371 28 3 3478 3847 642031837 642032204 4.440000e-139 505.0
39 TraesCS3B01G596800 chrUn 82.405 341 46 6 1 340 480923340 480923013 6.290000e-73 285.0
40 TraesCS3B01G596800 chr5A 78.202 367 63 12 1 363 427201686 427201333 6.470000e-53 219.0
41 TraesCS3B01G596800 chr1D 73.786 515 111 21 1 506 8529457 8529956 8.490000e-42 182.0
42 TraesCS3B01G596800 chr4D 82.955 176 26 4 5 179 452298083 452297911 5.150000e-34 156.0
43 TraesCS3B01G596800 chr5B 75.812 277 58 7 4 277 400754918 400754648 8.670000e-27 132.0
44 TraesCS3B01G596800 chr6A 83.193 119 14 5 653 765 497792512 497792394 1.890000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G596800 chr3B 819521398 819525244 3846 False 7105.000000 7105 100.000000 1 3847 1 chr3B.!!$F3 3846
1 TraesCS3B01G596800 chr3B 819380362 819384059 3697 False 2235.500000 2579 90.088500 1 3478 2 chr3B.!!$F5 3477
2 TraesCS3B01G596800 chr3B 819649048 819653500 4452 False 1764.666667 2608 93.207000 1 3478 3 chr3B.!!$F6 3477
3 TraesCS3B01G596800 chr3B 819296051 819302583 6532 False 1173.250000 2388 94.143250 1 3478 4 chr3B.!!$F4 3477
4 TraesCS3B01G596800 chr3B 819740033 819742414 2381 False 1007.500000 1411 85.327500 959 3125 2 chr3B.!!$F7 2166
5 TraesCS3B01G596800 chr3A 742313762 742315336 1574 False 2050.000000 2050 90.126000 1891 3478 1 chr3A.!!$F1 1587
6 TraesCS3B01G596800 chr3A 742331293 742334666 3373 False 1372.666667 1709 89.543333 1 3478 3 chr3A.!!$F4 3477
7 TraesCS3B01G596800 chr3A 742871240 742872387 1147 True 1195.000000 1195 85.542000 1696 2850 1 chr3A.!!$R1 1154
8 TraesCS3B01G596800 chr3A 742355389 742355914 525 False 651.000000 651 88.994000 959 1484 1 chr3A.!!$F2 525
9 TraesCS3B01G596800 chr3A 742274969 742278001 3032 False 628.000000 749 86.102000 1 1236 2 chr3A.!!$F3 1235
10 TraesCS3B01G596800 chr3D 608949919 608953287 3368 False 1952.000000 2001 90.568500 1 2980 2 chr3D.!!$F2 2979
11 TraesCS3B01G596800 chr3D 608980301 608981800 1499 False 1840.000000 1840 88.766000 1 1530 1 chr3D.!!$F1 1529
12 TraesCS3B01G596800 chr3D 609285438 609286678 1240 True 1275.000000 1275 85.212000 1696 2944 1 chr3D.!!$R1 1248
13 TraesCS3B01G596800 chr3D 609004575 609007001 2426 False 1061.500000 1489 86.009000 959 3178 2 chr3D.!!$F3 2219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 2585 0.468029 AAAACCCACCACAGGAGCTG 60.468 55.0 0.0 0.0 37.52 4.24 F
1985 6777 0.461693 AGCGGATCTTCAAGCAGCTC 60.462 55.0 0.0 0.0 41.03 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 7068 0.108520 CACCAATGAATGTGCCCTGC 60.109 55.0 0.00 0.0 0.00 4.85 R
3806 9948 0.033109 TGATGAGCTCGAGGGGAGAA 60.033 55.0 15.58 0.0 46.23 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 1.672030 CATGCACTGGAGCGAACCA 60.672 57.895 0.00 0.00 37.31 3.67
129 130 1.306141 ATCGCCCCTTCCTCACTGA 60.306 57.895 0.00 0.00 0.00 3.41
148 149 2.884639 TGAAGCCTGGCAAACTTTACTC 59.115 45.455 22.65 3.54 0.00 2.59
158 159 7.058023 TGGCAAACTTTACTCTAGTAGACAA 57.942 36.000 0.00 0.00 0.00 3.18
179 180 9.132923 AGACAATCAGAAAATCATCATGCTAAT 57.867 29.630 0.00 0.00 0.00 1.73
254 255 6.757237 AGCATAGATCAGAAGGATACAACTG 58.243 40.000 0.00 0.00 41.25 3.16
423 428 7.403231 AGACAGGGAGAACTTTATTCCATCTTA 59.597 37.037 0.00 0.00 32.50 2.10
445 450 1.461911 GGACCTATCGCCGCCTTACT 61.462 60.000 0.00 0.00 0.00 2.24
567 1548 7.656707 ACATCAAATTTAGAAATGGTTGTGC 57.343 32.000 0.00 0.00 0.00 4.57
693 2517 7.244898 TGAATAACGGAAATACAAAACCATCG 58.755 34.615 0.00 0.00 0.00 3.84
761 2585 0.468029 AAAACCCACCACAGGAGCTG 60.468 55.000 0.00 0.00 37.52 4.24
787 2611 2.203480 GACACCTGCTTTGGGGCA 60.203 61.111 0.00 0.00 40.15 5.36
957 4071 5.804639 TCCAACACATGTATAAGAAGCAGT 58.195 37.500 0.00 0.00 0.00 4.40
1110 4238 3.733337 GAAGAGACTGAGCAACAAAGGA 58.267 45.455 0.00 0.00 0.00 3.36
1586 6288 6.767456 AGGAAATAAGAGATGGTATCTGCTG 58.233 40.000 0.00 0.00 40.38 4.41
1602 6387 8.893727 GGTATCTGCTGTTTACATATTTCAGTT 58.106 33.333 0.00 0.00 0.00 3.16
1871 6661 2.345244 CACGTGCTTGAGGAGGCT 59.655 61.111 0.82 0.00 0.00 4.58
1985 6777 0.461693 AGCGGATCTTCAAGCAGCTC 60.462 55.000 0.00 0.00 41.03 4.09
2042 6834 2.743928 CCTCAGCGTGTCAAGCCC 60.744 66.667 7.16 0.00 34.64 5.19
2165 6989 9.197694 GTAAGTCATATTAGTTGCCTCTACATG 57.802 37.037 0.00 0.00 0.00 3.21
2494 7328 1.133915 GCGGGACATTAGAATTGGGGA 60.134 52.381 0.00 0.00 0.00 4.81
2571 7405 3.060615 CAGCAAGCTGGCCAGACC 61.061 66.667 37.21 19.60 40.17 3.85
2861 7695 0.037590 TCTAAGCACAACGGGGCATT 59.962 50.000 0.00 0.00 0.00 3.56
2868 7702 0.971959 ACAACGGGGCATTGCATGAT 60.972 50.000 11.39 0.00 0.00 2.45
2873 7707 1.401761 GGGGCATTGCATGATACACA 58.598 50.000 11.39 0.00 0.00 3.72
2877 7711 2.363038 GGCATTGCATGATACACACCAT 59.637 45.455 11.39 0.00 0.00 3.55
2885 7726 5.541484 TGCATGATACACACCATAGAGATCT 59.459 40.000 0.00 0.00 0.00 2.75
3141 9278 9.914834 AGCCTATAGAATAGGAGTGTTATAGAG 57.085 37.037 15.64 0.00 36.85 2.43
3213 9351 6.395780 TTTTGTATTCTAACATCCCCCTCA 57.604 37.500 0.00 0.00 0.00 3.86
3253 9391 4.816385 ACACACACCATTAAGACTGAACAG 59.184 41.667 0.00 0.00 0.00 3.16
3309 9451 2.677836 GCTTTTGGCATCATAGACGTGA 59.322 45.455 0.00 0.00 41.35 4.35
3324 9466 1.134640 ACGTGAAAGCCACTGTGTGTA 60.135 47.619 7.08 0.00 43.53 2.90
3397 9539 5.175859 CCCATGTGTATTTGAAGTCGTAGT 58.824 41.667 0.00 0.00 0.00 2.73
3421 9563 0.391228 TCGTGAGCAGTAGTGGCAAA 59.609 50.000 0.00 0.00 0.00 3.68
3478 9620 1.275010 TGCTCAAGCGAGGTGATAACA 59.725 47.619 0.00 0.00 45.83 2.41
3479 9621 1.661112 GCTCAAGCGAGGTGATAACAC 59.339 52.381 0.00 0.00 45.27 3.32
3480 9622 2.675317 GCTCAAGCGAGGTGATAACACT 60.675 50.000 2.93 0.00 45.32 3.55
3481 9623 3.428999 GCTCAAGCGAGGTGATAACACTA 60.429 47.826 2.93 0.00 45.32 2.74
3482 9624 4.355437 CTCAAGCGAGGTGATAACACTAG 58.645 47.826 2.93 0.00 45.32 2.57
3483 9625 3.762288 TCAAGCGAGGTGATAACACTAGT 59.238 43.478 2.93 0.00 45.32 2.57
3484 9626 3.784701 AGCGAGGTGATAACACTAGTG 57.215 47.619 21.44 21.44 45.32 2.74
3485 9627 2.427453 AGCGAGGTGATAACACTAGTGG 59.573 50.000 26.12 9.07 45.32 4.00
3486 9628 2.426024 GCGAGGTGATAACACTAGTGGA 59.574 50.000 26.12 14.33 45.32 4.02
3487 9629 3.119245 GCGAGGTGATAACACTAGTGGAA 60.119 47.826 26.12 14.12 45.32 3.53
3488 9630 4.619863 GCGAGGTGATAACACTAGTGGAAA 60.620 45.833 26.12 11.64 45.32 3.13
3489 9631 5.475719 CGAGGTGATAACACTAGTGGAAAA 58.524 41.667 26.12 9.20 45.32 2.29
3490 9632 5.929992 CGAGGTGATAACACTAGTGGAAAAA 59.070 40.000 26.12 6.77 45.32 1.94
3491 9633 6.090898 CGAGGTGATAACACTAGTGGAAAAAG 59.909 42.308 26.12 0.00 45.32 2.27
3492 9634 6.238648 AGGTGATAACACTAGTGGAAAAAGG 58.761 40.000 26.12 0.00 45.32 3.11
3493 9635 5.414765 GGTGATAACACTAGTGGAAAAAGGG 59.585 44.000 26.12 0.00 45.32 3.95
3494 9636 6.002082 GTGATAACACTAGTGGAAAAAGGGT 58.998 40.000 26.12 0.00 42.99 4.34
3495 9637 6.148976 GTGATAACACTAGTGGAAAAAGGGTC 59.851 42.308 26.12 10.98 42.99 4.46
3496 9638 4.790718 AACACTAGTGGAAAAAGGGTCT 57.209 40.909 26.12 0.00 34.19 3.85
3497 9639 5.899631 AACACTAGTGGAAAAAGGGTCTA 57.100 39.130 26.12 0.00 34.19 2.59
3498 9640 5.899631 ACACTAGTGGAAAAAGGGTCTAA 57.100 39.130 26.12 0.00 34.19 2.10
3499 9641 6.449830 ACACTAGTGGAAAAAGGGTCTAAT 57.550 37.500 26.12 0.00 34.19 1.73
3500 9642 6.238648 ACACTAGTGGAAAAAGGGTCTAATG 58.761 40.000 26.12 0.00 34.19 1.90
3501 9643 6.183361 ACACTAGTGGAAAAAGGGTCTAATGT 60.183 38.462 26.12 0.00 34.19 2.71
3502 9644 6.149474 CACTAGTGGAAAAAGGGTCTAATGTG 59.851 42.308 15.49 0.00 0.00 3.21
3503 9645 3.826729 AGTGGAAAAAGGGTCTAATGTGC 59.173 43.478 0.00 0.00 0.00 4.57
3504 9646 3.572255 GTGGAAAAAGGGTCTAATGTGCA 59.428 43.478 0.00 0.00 0.00 4.57
3505 9647 3.826157 TGGAAAAAGGGTCTAATGTGCAG 59.174 43.478 0.00 0.00 0.00 4.41
3506 9648 3.367395 GGAAAAAGGGTCTAATGTGCAGC 60.367 47.826 0.00 0.00 0.00 5.25
3507 9649 2.887151 AAAGGGTCTAATGTGCAGCT 57.113 45.000 0.00 0.00 0.00 4.24
3508 9650 2.409948 AAGGGTCTAATGTGCAGCTC 57.590 50.000 0.00 0.00 0.00 4.09
3509 9651 1.279496 AGGGTCTAATGTGCAGCTCA 58.721 50.000 0.00 0.00 0.00 4.26
3510 9652 1.842562 AGGGTCTAATGTGCAGCTCAT 59.157 47.619 4.02 4.02 0.00 2.90
3511 9653 2.240667 AGGGTCTAATGTGCAGCTCATT 59.759 45.455 22.76 22.76 38.72 2.57
3512 9654 3.455910 AGGGTCTAATGTGCAGCTCATTA 59.544 43.478 22.59 22.59 36.92 1.90
3514 9656 4.446371 GGTCTAATGTGCAGCTCATTAGT 58.554 43.478 34.95 16.76 46.86 2.24
3515 9657 4.509600 GGTCTAATGTGCAGCTCATTAGTC 59.490 45.833 34.95 31.55 46.86 2.59
3516 9658 5.355596 GTCTAATGTGCAGCTCATTAGTCT 58.644 41.667 34.95 16.21 46.86 3.24
3517 9659 5.461737 GTCTAATGTGCAGCTCATTAGTCTC 59.538 44.000 34.95 26.91 46.86 3.36
3518 9660 2.284263 TGTGCAGCTCATTAGTCTCG 57.716 50.000 0.00 0.00 0.00 4.04
3519 9661 1.134995 TGTGCAGCTCATTAGTCTCGG 60.135 52.381 0.00 0.00 0.00 4.63
3520 9662 1.134965 GTGCAGCTCATTAGTCTCGGT 60.135 52.381 0.00 0.00 0.00 4.69
3521 9663 1.550524 TGCAGCTCATTAGTCTCGGTT 59.449 47.619 0.00 0.00 0.00 4.44
3522 9664 2.028112 TGCAGCTCATTAGTCTCGGTTT 60.028 45.455 0.00 0.00 0.00 3.27
3523 9665 2.349886 GCAGCTCATTAGTCTCGGTTTG 59.650 50.000 0.00 0.00 0.00 2.93
3524 9666 3.849911 CAGCTCATTAGTCTCGGTTTGA 58.150 45.455 0.00 0.00 0.00 2.69
3525 9667 4.245660 CAGCTCATTAGTCTCGGTTTGAA 58.754 43.478 0.00 0.00 0.00 2.69
3526 9668 4.690748 CAGCTCATTAGTCTCGGTTTGAAA 59.309 41.667 0.00 0.00 0.00 2.69
3527 9669 5.352569 CAGCTCATTAGTCTCGGTTTGAAAT 59.647 40.000 0.00 0.00 0.00 2.17
3528 9670 5.940470 AGCTCATTAGTCTCGGTTTGAAATT 59.060 36.000 0.00 0.00 0.00 1.82
3529 9671 6.024049 GCTCATTAGTCTCGGTTTGAAATTG 58.976 40.000 0.00 0.00 0.00 2.32
3530 9672 6.128282 GCTCATTAGTCTCGGTTTGAAATTGA 60.128 38.462 0.00 0.00 0.00 2.57
3531 9673 7.364522 TCATTAGTCTCGGTTTGAAATTGAG 57.635 36.000 3.79 3.79 0.00 3.02
3532 9674 5.607119 TTAGTCTCGGTTTGAAATTGAGC 57.393 39.130 4.97 2.07 0.00 4.26
3533 9675 2.814336 AGTCTCGGTTTGAAATTGAGCC 59.186 45.455 4.97 0.00 0.00 4.70
3534 9676 1.804151 TCTCGGTTTGAAATTGAGCCG 59.196 47.619 5.90 5.90 40.43 5.52
3535 9677 0.878416 TCGGTTTGAAATTGAGCCGG 59.122 50.000 0.00 0.00 39.64 6.13
3536 9678 0.732538 CGGTTTGAAATTGAGCCGGC 60.733 55.000 21.89 21.89 36.05 6.13
3537 9679 0.316841 GGTTTGAAATTGAGCCGGCA 59.683 50.000 31.54 8.70 0.00 5.69
3538 9680 1.418373 GTTTGAAATTGAGCCGGCAC 58.582 50.000 31.54 24.60 0.00 5.01
3539 9681 1.000274 GTTTGAAATTGAGCCGGCACT 60.000 47.619 31.54 9.09 0.00 4.40
3540 9682 2.192664 TTGAAATTGAGCCGGCACTA 57.807 45.000 31.54 20.75 0.00 2.74
3541 9683 2.192664 TGAAATTGAGCCGGCACTAA 57.807 45.000 31.54 20.23 0.00 2.24
3542 9684 2.722094 TGAAATTGAGCCGGCACTAAT 58.278 42.857 31.54 21.57 0.00 1.73
3543 9685 2.423185 TGAAATTGAGCCGGCACTAATG 59.577 45.455 31.54 0.00 0.00 1.90
3544 9686 1.392589 AATTGAGCCGGCACTAATGG 58.607 50.000 31.54 0.00 0.00 3.16
3545 9687 0.255890 ATTGAGCCGGCACTAATGGT 59.744 50.000 31.54 4.27 0.00 3.55
3546 9688 0.392461 TTGAGCCGGCACTAATGGTC 60.392 55.000 31.54 15.36 0.00 4.02
3547 9689 1.220749 GAGCCGGCACTAATGGTCA 59.779 57.895 31.54 0.00 0.00 4.02
3548 9690 1.078426 AGCCGGCACTAATGGTCAC 60.078 57.895 31.54 0.00 0.00 3.67
3549 9691 1.376683 GCCGGCACTAATGGTCACA 60.377 57.895 24.80 0.00 0.00 3.58
3550 9692 0.748005 GCCGGCACTAATGGTCACAT 60.748 55.000 24.80 0.00 39.54 3.21
3552 9694 2.912771 CCGGCACTAATGGTCACATTA 58.087 47.619 0.00 0.00 45.17 1.90
3559 9701 1.750193 AATGGTCACATTAGTGCCGG 58.250 50.000 0.00 0.00 45.17 6.13
3560 9702 0.618458 ATGGTCACATTAGTGCCGGT 59.382 50.000 1.90 0.00 45.49 5.28
3561 9703 0.398696 TGGTCACATTAGTGCCGGTT 59.601 50.000 1.90 0.00 45.49 4.44
3562 9704 1.084289 GGTCACATTAGTGCCGGTTC 58.916 55.000 1.90 0.00 45.49 3.62
3563 9705 1.084289 GTCACATTAGTGCCGGTTCC 58.916 55.000 1.90 0.00 45.49 3.62
3564 9706 0.687920 TCACATTAGTGCCGGTTCCA 59.312 50.000 1.90 0.00 45.49 3.53
3565 9707 1.072489 TCACATTAGTGCCGGTTCCAA 59.928 47.619 1.90 0.00 45.49 3.53
3566 9708 1.199097 CACATTAGTGCCGGTTCCAAC 59.801 52.381 1.90 0.00 39.21 3.77
3567 9709 0.446222 CATTAGTGCCGGTTCCAACG 59.554 55.000 1.90 0.00 0.00 4.10
3573 9715 2.125269 CCGGTTCCAACGGCTAGG 60.125 66.667 0.00 0.00 45.34 3.02
3574 9716 2.660802 CGGTTCCAACGGCTAGGT 59.339 61.111 0.00 0.00 0.00 3.08
3575 9717 1.740296 CGGTTCCAACGGCTAGGTG 60.740 63.158 0.00 0.00 37.28 4.00
3593 9735 4.850822 GGCCGCTCCCTTTAGTAC 57.149 61.111 0.00 0.00 0.00 2.73
3594 9736 2.209475 GGCCGCTCCCTTTAGTACT 58.791 57.895 0.00 0.00 0.00 2.73
3595 9737 0.179081 GGCCGCTCCCTTTAGTACTG 60.179 60.000 5.39 0.00 0.00 2.74
3596 9738 0.822164 GCCGCTCCCTTTAGTACTGA 59.178 55.000 5.39 0.00 0.00 3.41
3597 9739 1.413077 GCCGCTCCCTTTAGTACTGAT 59.587 52.381 5.39 0.00 0.00 2.90
3598 9740 2.158943 GCCGCTCCCTTTAGTACTGATT 60.159 50.000 5.39 0.00 0.00 2.57
3599 9741 3.718815 CCGCTCCCTTTAGTACTGATTC 58.281 50.000 5.39 0.00 0.00 2.52
3600 9742 3.372954 CGCTCCCTTTAGTACTGATTCG 58.627 50.000 5.39 0.00 0.00 3.34
3601 9743 3.181489 CGCTCCCTTTAGTACTGATTCGT 60.181 47.826 5.39 0.00 0.00 3.85
3602 9744 4.113354 GCTCCCTTTAGTACTGATTCGTG 58.887 47.826 5.39 0.00 0.00 4.35
3603 9745 4.683832 CTCCCTTTAGTACTGATTCGTGG 58.316 47.826 5.39 0.00 0.00 4.94
3604 9746 4.346730 TCCCTTTAGTACTGATTCGTGGA 58.653 43.478 5.39 0.00 0.00 4.02
3605 9747 4.401519 TCCCTTTAGTACTGATTCGTGGAG 59.598 45.833 5.39 0.00 0.00 3.86
3606 9748 4.401519 CCCTTTAGTACTGATTCGTGGAGA 59.598 45.833 5.39 0.00 0.00 3.71
3607 9749 5.105473 CCCTTTAGTACTGATTCGTGGAGAA 60.105 44.000 5.39 0.00 43.93 2.87
3608 9750 5.805994 CCTTTAGTACTGATTCGTGGAGAAC 59.194 44.000 5.39 0.00 42.39 3.01
3609 9751 3.870633 AGTACTGATTCGTGGAGAACC 57.129 47.619 0.00 0.00 42.39 3.62
3610 9752 3.432378 AGTACTGATTCGTGGAGAACCT 58.568 45.455 0.00 0.00 42.39 3.50
3611 9753 3.833070 AGTACTGATTCGTGGAGAACCTT 59.167 43.478 0.00 0.00 42.39 3.50
3612 9754 3.771577 ACTGATTCGTGGAGAACCTTT 57.228 42.857 0.00 0.00 42.39 3.11
3613 9755 4.884668 ACTGATTCGTGGAGAACCTTTA 57.115 40.909 0.00 0.00 42.39 1.85
3614 9756 4.822026 ACTGATTCGTGGAGAACCTTTAG 58.178 43.478 0.00 0.00 42.39 1.85
3615 9757 3.596214 TGATTCGTGGAGAACCTTTAGC 58.404 45.455 0.00 0.00 42.39 3.09
3616 9758 3.007506 TGATTCGTGGAGAACCTTTAGCA 59.992 43.478 0.00 0.00 42.39 3.49
3617 9759 3.695830 TTCGTGGAGAACCTTTAGCAT 57.304 42.857 0.00 0.00 37.04 3.79
3618 9760 3.247006 TCGTGGAGAACCTTTAGCATC 57.753 47.619 0.00 0.00 37.04 3.91
3619 9761 1.927174 CGTGGAGAACCTTTAGCATCG 59.073 52.381 0.00 0.00 37.04 3.84
3620 9762 2.280628 GTGGAGAACCTTTAGCATCGG 58.719 52.381 0.00 0.00 37.04 4.18
3621 9763 1.906574 TGGAGAACCTTTAGCATCGGT 59.093 47.619 0.00 0.00 37.04 4.69
3622 9764 2.304761 TGGAGAACCTTTAGCATCGGTT 59.695 45.455 0.00 0.00 43.32 4.44
3625 9767 2.344025 GAACCTTTAGCATCGGTTCGT 58.656 47.619 10.18 0.00 44.86 3.85
3626 9768 1.722011 ACCTTTAGCATCGGTTCGTG 58.278 50.000 0.00 0.00 0.00 4.35
3627 9769 1.001633 ACCTTTAGCATCGGTTCGTGT 59.998 47.619 0.00 0.00 0.00 4.49
3628 9770 1.659098 CCTTTAGCATCGGTTCGTGTC 59.341 52.381 0.00 0.00 0.00 3.67
3629 9771 2.333926 CTTTAGCATCGGTTCGTGTCA 58.666 47.619 0.00 0.00 0.00 3.58
3630 9772 1.705256 TTAGCATCGGTTCGTGTCAC 58.295 50.000 0.00 0.00 0.00 3.67
3631 9773 0.455464 TAGCATCGGTTCGTGTCACG 60.455 55.000 19.38 19.38 44.19 4.35
3640 9782 3.832981 CGTGTCACGAACCGGTAC 58.167 61.111 20.75 1.54 46.05 3.34
3641 9783 1.283793 CGTGTCACGAACCGGTACT 59.716 57.895 20.75 0.00 46.05 2.73
3642 9784 0.516877 CGTGTCACGAACCGGTACTA 59.483 55.000 20.75 0.00 46.05 1.82
3643 9785 1.069296 CGTGTCACGAACCGGTACTAA 60.069 52.381 20.75 0.00 46.05 2.24
3644 9786 2.604373 CGTGTCACGAACCGGTACTAAA 60.604 50.000 20.75 0.00 46.05 1.85
3645 9787 3.380142 GTGTCACGAACCGGTACTAAAA 58.620 45.455 8.00 0.00 0.00 1.52
3646 9788 3.801594 GTGTCACGAACCGGTACTAAAAA 59.198 43.478 8.00 0.00 0.00 1.94
3647 9789 4.050553 TGTCACGAACCGGTACTAAAAAG 58.949 43.478 8.00 0.00 0.00 2.27
3648 9790 3.059166 TCACGAACCGGTACTAAAAAGC 58.941 45.455 8.00 0.00 0.00 3.51
3649 9791 2.061028 ACGAACCGGTACTAAAAAGCG 58.939 47.619 8.00 3.45 37.58 4.68
3650 9792 2.061028 CGAACCGGTACTAAAAAGCGT 58.939 47.619 8.00 0.00 36.16 5.07
3651 9793 2.159934 CGAACCGGTACTAAAAAGCGTG 60.160 50.000 8.00 0.00 36.16 5.34
3652 9794 1.799544 ACCGGTACTAAAAAGCGTGG 58.200 50.000 4.49 0.00 36.16 4.94
3653 9795 1.070601 ACCGGTACTAAAAAGCGTGGT 59.929 47.619 4.49 0.00 36.16 4.16
3654 9796 1.461897 CCGGTACTAAAAAGCGTGGTG 59.538 52.381 0.00 0.00 36.16 4.17
3655 9797 1.461897 CGGTACTAAAAAGCGTGGTGG 59.538 52.381 0.00 0.00 33.40 4.61
3656 9798 1.198408 GGTACTAAAAAGCGTGGTGGC 59.802 52.381 0.00 0.00 0.00 5.01
3657 9799 1.874872 GTACTAAAAAGCGTGGTGGCA 59.125 47.619 0.00 0.00 34.64 4.92
3658 9800 0.951558 ACTAAAAAGCGTGGTGGCAG 59.048 50.000 0.00 0.00 34.64 4.85
3659 9801 0.240945 CTAAAAAGCGTGGTGGCAGG 59.759 55.000 0.00 0.00 34.64 4.85
3660 9802 0.179015 TAAAAAGCGTGGTGGCAGGA 60.179 50.000 0.00 0.00 34.64 3.86
3661 9803 0.827507 AAAAAGCGTGGTGGCAGGAT 60.828 50.000 0.00 0.00 34.64 3.24
3662 9804 1.526575 AAAAGCGTGGTGGCAGGATG 61.527 55.000 0.00 0.00 40.87 3.51
3663 9805 2.697147 AAAGCGTGGTGGCAGGATGT 62.697 55.000 0.00 0.00 39.31 3.06
3664 9806 2.672996 GCGTGGTGGCAGGATGTT 60.673 61.111 0.00 0.00 39.31 2.71
3665 9807 2.981560 GCGTGGTGGCAGGATGTTG 61.982 63.158 0.00 0.00 39.31 3.33
3666 9808 1.600636 CGTGGTGGCAGGATGTTGT 60.601 57.895 0.00 0.00 39.31 3.32
3667 9809 1.577328 CGTGGTGGCAGGATGTTGTC 61.577 60.000 0.00 0.00 39.31 3.18
3668 9810 0.537143 GTGGTGGCAGGATGTTGTCA 60.537 55.000 0.00 0.00 39.31 3.58
3669 9811 0.250858 TGGTGGCAGGATGTTGTCAG 60.251 55.000 0.00 0.00 39.31 3.51
3670 9812 0.036732 GGTGGCAGGATGTTGTCAGA 59.963 55.000 0.00 0.00 39.31 3.27
3671 9813 1.160137 GTGGCAGGATGTTGTCAGAC 58.840 55.000 0.00 0.00 39.31 3.51
3672 9814 0.036732 TGGCAGGATGTTGTCAGACC 59.963 55.000 0.00 0.00 39.31 3.85
3673 9815 1.021390 GGCAGGATGTTGTCAGACCG 61.021 60.000 0.00 0.00 39.31 4.79
3674 9816 1.021390 GCAGGATGTTGTCAGACCGG 61.021 60.000 0.00 0.00 39.31 5.28
3675 9817 0.391661 CAGGATGTTGTCAGACCGGG 60.392 60.000 6.32 0.00 32.32 5.73
3676 9818 0.544357 AGGATGTTGTCAGACCGGGA 60.544 55.000 6.32 0.00 32.32 5.14
3677 9819 0.391263 GGATGTTGTCAGACCGGGAC 60.391 60.000 6.32 4.12 35.83 4.46
3678 9820 0.391263 GATGTTGTCAGACCGGGACC 60.391 60.000 6.32 0.00 34.36 4.46
3679 9821 1.838073 ATGTTGTCAGACCGGGACCC 61.838 60.000 6.32 0.00 34.36 4.46
3681 9823 4.608774 TGTCAGACCGGGACCCGT 62.609 66.667 30.60 18.88 46.80 5.28
3682 9824 3.756727 GTCAGACCGGGACCCGTC 61.757 72.222 30.60 25.18 46.80 4.79
3692 9834 2.430367 GACCCGTCCAGCACCTTT 59.570 61.111 0.00 0.00 0.00 3.11
3693 9835 1.675219 GACCCGTCCAGCACCTTTA 59.325 57.895 0.00 0.00 0.00 1.85
3694 9836 0.391263 GACCCGTCCAGCACCTTTAG 60.391 60.000 0.00 0.00 0.00 1.85
3695 9837 1.125711 ACCCGTCCAGCACCTTTAGT 61.126 55.000 0.00 0.00 0.00 2.24
3696 9838 0.899720 CCCGTCCAGCACCTTTAGTA 59.100 55.000 0.00 0.00 0.00 1.82
3697 9839 1.405121 CCCGTCCAGCACCTTTAGTAC 60.405 57.143 0.00 0.00 0.00 2.73
3698 9840 1.405121 CCGTCCAGCACCTTTAGTACC 60.405 57.143 0.00 0.00 0.00 3.34
3699 9841 1.734707 CGTCCAGCACCTTTAGTACCG 60.735 57.143 0.00 0.00 0.00 4.02
3700 9842 0.899720 TCCAGCACCTTTAGTACCGG 59.100 55.000 0.00 0.00 0.00 5.28
3701 9843 0.611714 CCAGCACCTTTAGTACCGGT 59.388 55.000 13.98 13.98 0.00 5.28
3702 9844 1.002773 CCAGCACCTTTAGTACCGGTT 59.997 52.381 15.04 0.00 0.00 4.44
3703 9845 2.344025 CAGCACCTTTAGTACCGGTTC 58.656 52.381 15.04 8.12 0.00 3.62
3704 9846 2.028385 CAGCACCTTTAGTACCGGTTCT 60.028 50.000 15.04 17.06 0.00 3.01
3705 9847 2.636403 AGCACCTTTAGTACCGGTTCTT 59.364 45.455 19.55 4.74 0.00 2.52
3706 9848 2.740447 GCACCTTTAGTACCGGTTCTTG 59.260 50.000 19.55 11.77 0.00 3.02
3707 9849 2.740447 CACCTTTAGTACCGGTTCTTGC 59.260 50.000 19.55 2.05 0.00 4.01
3708 9850 2.289882 ACCTTTAGTACCGGTTCTTGCC 60.290 50.000 19.55 0.00 0.00 4.52
3709 9851 2.289819 CCTTTAGTACCGGTTCTTGCCA 60.290 50.000 19.55 0.00 0.00 4.92
3710 9852 2.460757 TTAGTACCGGTTCTTGCCAC 57.539 50.000 19.55 6.15 0.00 5.01
3711 9853 0.244450 TAGTACCGGTTCTTGCCACG 59.756 55.000 19.55 0.00 0.00 4.94
3712 9854 1.005867 GTACCGGTTCTTGCCACGA 60.006 57.895 15.04 0.00 0.00 4.35
3713 9855 0.600782 GTACCGGTTCTTGCCACGAA 60.601 55.000 15.04 0.00 0.00 3.85
3714 9856 0.600782 TACCGGTTCTTGCCACGAAC 60.601 55.000 15.04 5.56 39.92 3.95
3717 9859 2.943653 GTTCTTGCCACGAACCGG 59.056 61.111 0.00 0.00 35.81 5.28
3718 9860 1.890510 GTTCTTGCCACGAACCGGT 60.891 57.895 0.00 0.00 35.81 5.28
3719 9861 0.600782 GTTCTTGCCACGAACCGGTA 60.601 55.000 8.00 0.00 35.81 4.02
3720 9862 0.600782 TTCTTGCCACGAACCGGTAC 60.601 55.000 8.00 0.00 0.00 3.34
3721 9863 1.005394 CTTGCCACGAACCGGTACT 60.005 57.895 8.00 0.00 0.00 2.73
3722 9864 0.244450 CTTGCCACGAACCGGTACTA 59.756 55.000 8.00 0.00 0.00 1.82
3723 9865 0.896923 TTGCCACGAACCGGTACTAT 59.103 50.000 8.00 0.00 0.00 2.12
3724 9866 1.761449 TGCCACGAACCGGTACTATA 58.239 50.000 8.00 0.00 0.00 1.31
3725 9867 1.677576 TGCCACGAACCGGTACTATAG 59.322 52.381 8.00 0.00 0.00 1.31
3726 9868 1.000938 GCCACGAACCGGTACTATAGG 60.001 57.143 8.00 6.95 0.00 2.57
3727 9869 2.301346 CCACGAACCGGTACTATAGGT 58.699 52.381 8.00 0.00 40.50 3.08
3728 9870 2.291741 CCACGAACCGGTACTATAGGTC 59.708 54.545 8.00 0.00 37.26 3.85
3729 9871 2.032549 CACGAACCGGTACTATAGGTCG 60.033 54.545 8.00 13.90 37.26 4.79
3730 9872 2.213499 CGAACCGGTACTATAGGTCGT 58.787 52.381 8.00 0.00 37.26 4.34
3731 9873 2.221981 CGAACCGGTACTATAGGTCGTC 59.778 54.545 8.00 0.00 37.26 4.20
3732 9874 2.262423 ACCGGTACTATAGGTCGTCC 57.738 55.000 4.49 0.00 31.69 4.79
3746 9888 4.812653 AGGTCGTCCTACATATAAACCCT 58.187 43.478 0.00 0.00 43.12 4.34
3747 9889 5.214293 AGGTCGTCCTACATATAAACCCTT 58.786 41.667 0.00 0.00 43.12 3.95
3748 9890 5.303845 AGGTCGTCCTACATATAAACCCTTC 59.696 44.000 0.00 0.00 43.12 3.46
3749 9891 5.218139 GTCGTCCTACATATAAACCCTTCG 58.782 45.833 0.00 0.00 0.00 3.79
3750 9892 4.889409 TCGTCCTACATATAAACCCTTCGT 59.111 41.667 0.00 0.00 0.00 3.85
3751 9893 5.009010 TCGTCCTACATATAAACCCTTCGTC 59.991 44.000 0.00 0.00 0.00 4.20
3752 9894 5.009410 CGTCCTACATATAAACCCTTCGTCT 59.991 44.000 0.00 0.00 0.00 4.18
3753 9895 6.205464 CGTCCTACATATAAACCCTTCGTCTA 59.795 42.308 0.00 0.00 0.00 2.59
3754 9896 7.572724 CGTCCTACATATAAACCCTTCGTCTAG 60.573 44.444 0.00 0.00 0.00 2.43
3755 9897 6.208204 TCCTACATATAAACCCTTCGTCTAGC 59.792 42.308 0.00 0.00 0.00 3.42
3756 9898 6.208994 CCTACATATAAACCCTTCGTCTAGCT 59.791 42.308 0.00 0.00 0.00 3.32
3757 9899 6.086785 ACATATAAACCCTTCGTCTAGCTC 57.913 41.667 0.00 0.00 0.00 4.09
3758 9900 5.597182 ACATATAAACCCTTCGTCTAGCTCA 59.403 40.000 0.00 0.00 0.00 4.26
3759 9901 2.745515 AAACCCTTCGTCTAGCTCAC 57.254 50.000 0.00 0.00 0.00 3.51
3760 9902 1.926108 AACCCTTCGTCTAGCTCACT 58.074 50.000 0.00 0.00 0.00 3.41
3761 9903 1.465794 ACCCTTCGTCTAGCTCACTC 58.534 55.000 0.00 0.00 0.00 3.51
3762 9904 1.004979 ACCCTTCGTCTAGCTCACTCT 59.995 52.381 0.00 0.00 0.00 3.24
3763 9905 1.403679 CCCTTCGTCTAGCTCACTCTG 59.596 57.143 0.00 0.00 0.00 3.35
3764 9906 2.088423 CCTTCGTCTAGCTCACTCTGT 58.912 52.381 0.00 0.00 0.00 3.41
3765 9907 2.490115 CCTTCGTCTAGCTCACTCTGTT 59.510 50.000 0.00 0.00 0.00 3.16
3766 9908 3.426963 CCTTCGTCTAGCTCACTCTGTTC 60.427 52.174 0.00 0.00 0.00 3.18
3767 9909 3.060736 TCGTCTAGCTCACTCTGTTCT 57.939 47.619 0.00 0.00 0.00 3.01
3768 9910 3.413327 TCGTCTAGCTCACTCTGTTCTT 58.587 45.455 0.00 0.00 0.00 2.52
3769 9911 3.437395 TCGTCTAGCTCACTCTGTTCTTC 59.563 47.826 0.00 0.00 0.00 2.87
3770 9912 3.426963 CGTCTAGCTCACTCTGTTCTTCC 60.427 52.174 0.00 0.00 0.00 3.46
3771 9913 3.093057 TCTAGCTCACTCTGTTCTTCCC 58.907 50.000 0.00 0.00 0.00 3.97
3772 9914 0.980423 AGCTCACTCTGTTCTTCCCC 59.020 55.000 0.00 0.00 0.00 4.81
3773 9915 0.035915 GCTCACTCTGTTCTTCCCCC 60.036 60.000 0.00 0.00 0.00 5.40
3774 9916 1.650528 CTCACTCTGTTCTTCCCCCT 58.349 55.000 0.00 0.00 0.00 4.79
3775 9917 1.981495 CTCACTCTGTTCTTCCCCCTT 59.019 52.381 0.00 0.00 0.00 3.95
3776 9918 1.978580 TCACTCTGTTCTTCCCCCTTC 59.021 52.381 0.00 0.00 0.00 3.46
3777 9919 1.003696 CACTCTGTTCTTCCCCCTTCC 59.996 57.143 0.00 0.00 0.00 3.46
3778 9920 0.621082 CTCTGTTCTTCCCCCTTCCC 59.379 60.000 0.00 0.00 0.00 3.97
3779 9921 0.845102 TCTGTTCTTCCCCCTTCCCC 60.845 60.000 0.00 0.00 0.00 4.81
3780 9922 1.855451 TGTTCTTCCCCCTTCCCCC 60.855 63.158 0.00 0.00 0.00 5.40
3781 9923 1.544151 GTTCTTCCCCCTTCCCCCT 60.544 63.158 0.00 0.00 0.00 4.79
3782 9924 1.230182 TTCTTCCCCCTTCCCCCTC 60.230 63.158 0.00 0.00 0.00 4.30
3783 9925 1.772561 TTCTTCCCCCTTCCCCCTCT 61.773 60.000 0.00 0.00 0.00 3.69
3784 9926 1.694525 CTTCCCCCTTCCCCCTCTC 60.695 68.421 0.00 0.00 0.00 3.20
3785 9927 3.283467 TTCCCCCTTCCCCCTCTCC 62.283 68.421 0.00 0.00 0.00 3.71
3786 9928 3.711782 CCCCCTTCCCCCTCTCCT 61.712 72.222 0.00 0.00 0.00 3.69
3787 9929 2.040359 CCCCTTCCCCCTCTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
3788 9930 2.652113 CCCCTTCCCCCTCTCCTCT 61.652 68.421 0.00 0.00 0.00 3.69
3789 9931 1.074850 CCCTTCCCCCTCTCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
3790 9932 1.074850 CCTTCCCCCTCTCCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
3791 9933 1.598856 CCTTCCCCCTCTCCTCTCCT 61.599 65.000 0.00 0.00 0.00 3.69
3792 9934 0.105709 CTTCCCCCTCTCCTCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
3793 9935 0.556380 TTCCCCCTCTCCTCTCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
3794 9936 0.996762 TCCCCCTCTCCTCTCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
3795 9937 0.998945 CCCCCTCTCCTCTCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3796 9938 0.185901 CCCCTCTCCTCTCCTCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
3797 9939 0.926293 CCCTCTCCTCTCCTCTCTGT 59.074 60.000 0.00 0.00 0.00 3.41
3798 9940 1.287739 CCCTCTCCTCTCCTCTCTGTT 59.712 57.143 0.00 0.00 0.00 3.16
3799 9941 2.654863 CCTCTCCTCTCCTCTCTGTTC 58.345 57.143 0.00 0.00 0.00 3.18
3800 9942 2.242196 CCTCTCCTCTCCTCTCTGTTCT 59.758 54.545 0.00 0.00 0.00 3.01
3801 9943 3.309121 CCTCTCCTCTCCTCTCTGTTCTT 60.309 52.174 0.00 0.00 0.00 2.52
3802 9944 3.947834 CTCTCCTCTCCTCTCTGTTCTTC 59.052 52.174 0.00 0.00 0.00 2.87
3803 9945 3.023832 CTCCTCTCCTCTCTGTTCTTCC 58.976 54.545 0.00 0.00 0.00 3.46
3804 9946 2.652348 TCCTCTCCTCTCTGTTCTTCCT 59.348 50.000 0.00 0.00 0.00 3.36
3805 9947 3.023832 CCTCTCCTCTCTGTTCTTCCTC 58.976 54.545 0.00 0.00 0.00 3.71
3806 9948 3.309121 CCTCTCCTCTCTGTTCTTCCTCT 60.309 52.174 0.00 0.00 0.00 3.69
3807 9949 4.344104 CTCTCCTCTCTGTTCTTCCTCTT 58.656 47.826 0.00 0.00 0.00 2.85
3808 9950 4.340617 TCTCCTCTCTGTTCTTCCTCTTC 58.659 47.826 0.00 0.00 0.00 2.87
3809 9951 4.044065 TCTCCTCTCTGTTCTTCCTCTTCT 59.956 45.833 0.00 0.00 0.00 2.85
3810 9952 4.340617 TCCTCTCTGTTCTTCCTCTTCTC 58.659 47.826 0.00 0.00 0.00 2.87
3811 9953 3.447229 CCTCTCTGTTCTTCCTCTTCTCC 59.553 52.174 0.00 0.00 0.00 3.71
3812 9954 3.436243 TCTCTGTTCTTCCTCTTCTCCC 58.564 50.000 0.00 0.00 0.00 4.30
3813 9955 2.499693 CTCTGTTCTTCCTCTTCTCCCC 59.500 54.545 0.00 0.00 0.00 4.81
3814 9956 2.112691 TCTGTTCTTCCTCTTCTCCCCT 59.887 50.000 0.00 0.00 0.00 4.79
3815 9957 2.499693 CTGTTCTTCCTCTTCTCCCCTC 59.500 54.545 0.00 0.00 0.00 4.30
3816 9958 1.478916 GTTCTTCCTCTTCTCCCCTCG 59.521 57.143 0.00 0.00 0.00 4.63
3817 9959 1.000496 TCTTCCTCTTCTCCCCTCGA 59.000 55.000 0.00 0.00 0.00 4.04
3818 9960 1.064314 TCTTCCTCTTCTCCCCTCGAG 60.064 57.143 5.13 5.13 40.30 4.04
3819 9961 0.684805 TTCCTCTTCTCCCCTCGAGC 60.685 60.000 6.99 0.00 38.62 5.03
3820 9962 1.076339 CCTCTTCTCCCCTCGAGCT 60.076 63.158 6.99 0.00 38.62 4.09
3821 9963 1.106944 CCTCTTCTCCCCTCGAGCTC 61.107 65.000 6.99 2.73 38.62 4.09
3822 9964 0.395036 CTCTTCTCCCCTCGAGCTCA 60.395 60.000 15.40 0.00 38.62 4.26
3823 9965 0.260230 TCTTCTCCCCTCGAGCTCAT 59.740 55.000 15.40 0.00 38.62 2.90
3824 9966 0.673437 CTTCTCCCCTCGAGCTCATC 59.327 60.000 15.40 0.00 38.62 2.92
3825 9967 0.033109 TTCTCCCCTCGAGCTCATCA 60.033 55.000 15.40 0.00 38.62 3.07
3826 9968 0.753479 TCTCCCCTCGAGCTCATCAC 60.753 60.000 15.40 0.00 38.62 3.06
3827 9969 1.000359 TCCCCTCGAGCTCATCACA 60.000 57.895 15.40 0.00 0.00 3.58
3828 9970 1.142748 CCCCTCGAGCTCATCACAC 59.857 63.158 15.40 0.00 0.00 3.82
3829 9971 1.607801 CCCCTCGAGCTCATCACACA 61.608 60.000 15.40 0.00 0.00 3.72
3830 9972 0.463204 CCCTCGAGCTCATCACACAT 59.537 55.000 15.40 0.00 0.00 3.21
3831 9973 1.134580 CCCTCGAGCTCATCACACATT 60.135 52.381 15.40 0.00 0.00 2.71
3832 9974 2.625737 CCTCGAGCTCATCACACATTT 58.374 47.619 15.40 0.00 0.00 2.32
3833 9975 3.005554 CCTCGAGCTCATCACACATTTT 58.994 45.455 15.40 0.00 0.00 1.82
3834 9976 3.181513 CCTCGAGCTCATCACACATTTTG 60.182 47.826 15.40 0.00 0.00 2.44
3835 9977 2.160219 TCGAGCTCATCACACATTTTGC 59.840 45.455 15.40 0.00 0.00 3.68
3836 9978 2.730090 CGAGCTCATCACACATTTTGCC 60.730 50.000 15.40 0.00 0.00 4.52
3837 9979 1.547372 AGCTCATCACACATTTTGCCC 59.453 47.619 0.00 0.00 0.00 5.36
3838 9980 1.273048 GCTCATCACACATTTTGCCCA 59.727 47.619 0.00 0.00 0.00 5.36
3839 9981 2.288948 GCTCATCACACATTTTGCCCAA 60.289 45.455 0.00 0.00 0.00 4.12
3840 9982 3.803021 GCTCATCACACATTTTGCCCAAA 60.803 43.478 0.00 0.00 0.00 3.28
3841 9983 4.571919 CTCATCACACATTTTGCCCAAAT 58.428 39.130 0.00 0.00 35.24 2.32
3842 9984 4.970711 TCATCACACATTTTGCCCAAATT 58.029 34.783 0.00 0.00 32.24 1.82
3843 9985 5.374921 TCATCACACATTTTGCCCAAATTT 58.625 33.333 0.00 0.00 32.24 1.82
3844 9986 5.826737 TCATCACACATTTTGCCCAAATTTT 59.173 32.000 0.00 0.00 32.24 1.82
3845 9987 5.496133 TCACACATTTTGCCCAAATTTTG 57.504 34.783 1.99 1.99 32.24 2.44
3846 9988 4.946157 TCACACATTTTGCCCAAATTTTGT 59.054 33.333 8.26 0.00 32.24 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 1.661341 GATGATGACAGAGCGGCTTT 58.339 50.000 2.97 0.00 0.00 3.51
102 103 0.465705 GAAGGGGCGATGATGACAGA 59.534 55.000 0.00 0.00 0.00 3.41
129 130 3.229697 AGAGTAAAGTTTGCCAGGCTT 57.770 42.857 14.15 0.00 0.00 4.35
158 159 7.039923 GGGTCATTAGCATGATGATTTTCTGAT 60.040 37.037 0.00 0.00 41.64 2.90
179 180 2.229792 GTGCACTGATCTTTTGGGTCA 58.770 47.619 10.32 0.00 0.00 4.02
254 255 5.940192 TTTGTCATGTTCATGTGTCTACC 57.060 39.130 11.73 0.00 0.00 3.18
423 428 3.547513 GGCGGCGATAGGTCCCTT 61.548 66.667 12.98 0.00 0.00 3.95
445 450 9.629878 TTTTAGGTTTGTGTTATACTCAGGAAA 57.370 29.630 0.00 0.00 0.00 3.13
497 504 2.203181 GCTGGAGGGCTCATGCTC 60.203 66.667 0.00 0.00 40.76 4.26
522 529 7.690141 GATGTTAATCAATGAGCATCCTGGCT 61.690 42.308 7.93 0.00 38.66 4.75
693 2517 4.496360 CTTTCCCGTCTCCTTAAACTCTC 58.504 47.826 0.00 0.00 0.00 3.20
787 2611 1.578583 CCAGGTGTCGTCGAGTTTTT 58.421 50.000 0.00 0.00 0.00 1.94
957 4071 1.757118 GGTGATGTGCTACTCCTGCTA 59.243 52.381 0.00 0.00 0.00 3.49
1091 4219 2.703007 AGTCCTTTGTTGCTCAGTCTCT 59.297 45.455 0.00 0.00 0.00 3.10
1602 6387 1.680555 GGACGTGTGCCCCATTAATCA 60.681 52.381 0.00 0.00 0.00 2.57
1611 6396 2.038387 ATTTATGAGGACGTGTGCCC 57.962 50.000 0.00 0.00 0.00 5.36
1871 6661 0.839277 AGCTGGCCTGCACATGTATA 59.161 50.000 32.96 0.00 34.99 1.47
1985 6777 4.860072 TGATGGTCTCGAAGAATGTATCG 58.140 43.478 0.00 0.00 40.31 2.92
2002 6794 2.949644 TCAAGATGCTGCTCAATGATGG 59.050 45.455 0.00 0.00 0.00 3.51
2042 6834 0.881118 CAACAAGGTCACCATTCCGG 59.119 55.000 0.00 0.00 42.50 5.14
2165 6989 4.313277 TCCTCAATCGAGACATGACATC 57.687 45.455 0.00 0.00 42.34 3.06
2233 7067 0.542467 ACCAATGAATGTGCCCTGCA 60.542 50.000 0.00 0.00 35.60 4.41
2234 7068 0.108520 CACCAATGAATGTGCCCTGC 60.109 55.000 0.00 0.00 0.00 4.85
2235 7069 0.533491 CCACCAATGAATGTGCCCTG 59.467 55.000 0.00 0.00 0.00 4.45
2236 7070 1.259840 GCCACCAATGAATGTGCCCT 61.260 55.000 0.00 0.00 0.00 5.19
2494 7328 1.346395 TCTTGGCCAACACGTCATAGT 59.654 47.619 16.05 0.00 0.00 2.12
2571 7405 0.875059 GGTTTGAACTCTTCCGGCTG 59.125 55.000 0.00 0.00 0.00 4.85
2664 7498 0.905357 GATAGTGCGGGGCATATCCT 59.095 55.000 0.00 0.00 41.91 3.24
2758 7592 1.892819 CTCCTCCATGCTCACCACGT 61.893 60.000 0.00 0.00 0.00 4.49
2861 7695 5.541484 AGATCTCTATGGTGTGTATCATGCA 59.459 40.000 0.00 0.00 0.00 3.96
2877 7711 8.489489 AGCAGATTAATTTTCACCAGATCTCTA 58.511 33.333 0.00 0.00 0.00 2.43
2885 7726 4.671831 TGGGAGCAGATTAATTTTCACCA 58.328 39.130 0.00 0.00 0.00 4.17
3213 9351 1.064003 TGTTGCCACCACTATGACCT 58.936 50.000 0.00 0.00 0.00 3.85
3253 9391 5.614887 GCGCCGTATTCATCTTTTCTAATCC 60.615 44.000 0.00 0.00 0.00 3.01
3309 9451 3.016736 GGCATATACACACAGTGGCTTT 58.983 45.455 5.31 0.00 37.94 3.51
3324 9466 2.044806 GACAGGTGGCCGAGGCATAT 62.045 60.000 16.65 0.00 44.11 1.78
3397 9539 1.405463 CCACTACTGCTCACGATGCTA 59.595 52.381 0.00 0.00 0.00 3.49
3421 9563 2.301346 CTCCAGCCAAAAGTGTCTGTT 58.699 47.619 0.00 0.00 0.00 3.16
3478 9620 6.238648 CACATTAGACCCTTTTTCCACTAGT 58.761 40.000 0.00 0.00 0.00 2.57
3479 9621 5.123979 GCACATTAGACCCTTTTTCCACTAG 59.876 44.000 0.00 0.00 0.00 2.57
3480 9622 5.007682 GCACATTAGACCCTTTTTCCACTA 58.992 41.667 0.00 0.00 0.00 2.74
3481 9623 3.826729 GCACATTAGACCCTTTTTCCACT 59.173 43.478 0.00 0.00 0.00 4.00
3482 9624 3.572255 TGCACATTAGACCCTTTTTCCAC 59.428 43.478 0.00 0.00 0.00 4.02
3483 9625 3.826157 CTGCACATTAGACCCTTTTTCCA 59.174 43.478 0.00 0.00 0.00 3.53
3484 9626 3.367395 GCTGCACATTAGACCCTTTTTCC 60.367 47.826 0.00 0.00 0.00 3.13
3485 9627 3.507622 AGCTGCACATTAGACCCTTTTTC 59.492 43.478 1.02 0.00 0.00 2.29
3486 9628 3.500343 AGCTGCACATTAGACCCTTTTT 58.500 40.909 1.02 0.00 0.00 1.94
3487 9629 3.084786 GAGCTGCACATTAGACCCTTTT 58.915 45.455 1.02 0.00 0.00 2.27
3488 9630 2.040278 TGAGCTGCACATTAGACCCTTT 59.960 45.455 1.02 0.00 0.00 3.11
3489 9631 1.630369 TGAGCTGCACATTAGACCCTT 59.370 47.619 1.02 0.00 0.00 3.95
3490 9632 1.279496 TGAGCTGCACATTAGACCCT 58.721 50.000 1.02 0.00 0.00 4.34
3491 9633 2.338577 ATGAGCTGCACATTAGACCC 57.661 50.000 6.75 0.00 0.00 4.46
3496 9638 4.363138 CGAGACTAATGAGCTGCACATTA 58.637 43.478 24.25 24.25 38.61 1.90
3497 9639 3.193263 CGAGACTAATGAGCTGCACATT 58.807 45.455 24.57 24.57 40.40 2.71
3498 9640 2.482664 CCGAGACTAATGAGCTGCACAT 60.483 50.000 6.75 6.75 0.00 3.21
3499 9641 1.134995 CCGAGACTAATGAGCTGCACA 60.135 52.381 1.49 1.49 0.00 4.57
3500 9642 1.134965 ACCGAGACTAATGAGCTGCAC 60.135 52.381 1.02 0.00 0.00 4.57
3501 9643 1.186200 ACCGAGACTAATGAGCTGCA 58.814 50.000 1.02 0.00 0.00 4.41
3502 9644 2.301577 AACCGAGACTAATGAGCTGC 57.698 50.000 0.00 0.00 0.00 5.25
3503 9645 3.849911 TCAAACCGAGACTAATGAGCTG 58.150 45.455 0.00 0.00 0.00 4.24
3504 9646 4.537135 TTCAAACCGAGACTAATGAGCT 57.463 40.909 0.00 0.00 0.00 4.09
3505 9647 5.803020 ATTTCAAACCGAGACTAATGAGC 57.197 39.130 0.00 0.00 0.00 4.26
3506 9648 7.364522 TCAATTTCAAACCGAGACTAATGAG 57.635 36.000 0.00 0.00 0.00 2.90
3507 9649 6.128282 GCTCAATTTCAAACCGAGACTAATGA 60.128 38.462 2.42 0.00 0.00 2.57
3508 9650 6.024049 GCTCAATTTCAAACCGAGACTAATG 58.976 40.000 2.42 0.00 0.00 1.90
3509 9651 5.123979 GGCTCAATTTCAAACCGAGACTAAT 59.876 40.000 2.42 0.00 0.00 1.73
3510 9652 4.454504 GGCTCAATTTCAAACCGAGACTAA 59.545 41.667 2.42 0.00 0.00 2.24
3511 9653 4.000988 GGCTCAATTTCAAACCGAGACTA 58.999 43.478 2.42 0.00 0.00 2.59
3512 9654 2.814336 GGCTCAATTTCAAACCGAGACT 59.186 45.455 2.42 0.00 0.00 3.24
3513 9655 2.412847 CGGCTCAATTTCAAACCGAGAC 60.413 50.000 2.42 0.00 43.19 3.36
3514 9656 1.804151 CGGCTCAATTTCAAACCGAGA 59.196 47.619 2.42 0.00 43.19 4.04
3515 9657 1.135689 CCGGCTCAATTTCAAACCGAG 60.136 52.381 0.00 0.00 43.19 4.63
3516 9658 0.878416 CCGGCTCAATTTCAAACCGA 59.122 50.000 0.00 0.00 43.19 4.69
3517 9659 0.732538 GCCGGCTCAATTTCAAACCG 60.733 55.000 22.15 0.00 40.30 4.44
3518 9660 0.316841 TGCCGGCTCAATTTCAAACC 59.683 50.000 29.70 0.00 0.00 3.27
3519 9661 1.000274 AGTGCCGGCTCAATTTCAAAC 60.000 47.619 29.70 13.21 0.00 2.93
3520 9662 1.327303 AGTGCCGGCTCAATTTCAAA 58.673 45.000 29.70 0.00 0.00 2.69
3521 9663 2.192664 TAGTGCCGGCTCAATTTCAA 57.807 45.000 29.70 0.00 0.00 2.69
3522 9664 2.192664 TTAGTGCCGGCTCAATTTCA 57.807 45.000 29.70 0.07 0.00 2.69
3523 9665 2.223572 CCATTAGTGCCGGCTCAATTTC 60.224 50.000 29.70 8.96 0.00 2.17
3524 9666 1.750778 CCATTAGTGCCGGCTCAATTT 59.249 47.619 29.70 10.68 0.00 1.82
3525 9667 1.340991 ACCATTAGTGCCGGCTCAATT 60.341 47.619 29.70 11.07 0.00 2.32
3526 9668 0.255890 ACCATTAGTGCCGGCTCAAT 59.744 50.000 29.70 21.01 0.00 2.57
3527 9669 0.392461 GACCATTAGTGCCGGCTCAA 60.392 55.000 29.70 19.77 0.00 3.02
3528 9670 1.220749 GACCATTAGTGCCGGCTCA 59.779 57.895 29.70 9.72 0.00 4.26
3529 9671 1.090052 GTGACCATTAGTGCCGGCTC 61.090 60.000 29.70 25.08 0.00 4.70
3530 9672 1.078426 GTGACCATTAGTGCCGGCT 60.078 57.895 29.70 11.31 0.00 5.52
3531 9673 0.748005 ATGTGACCATTAGTGCCGGC 60.748 55.000 22.73 22.73 0.00 6.13
3532 9674 1.750193 AATGTGACCATTAGTGCCGG 58.250 50.000 0.00 0.00 39.52 6.13
3545 9687 0.687920 TGGAACCGGCACTAATGTGA 59.312 50.000 0.00 0.00 46.55 3.58
3546 9688 1.199097 GTTGGAACCGGCACTAATGTG 59.801 52.381 0.00 0.00 46.37 3.21
3547 9689 1.530323 GTTGGAACCGGCACTAATGT 58.470 50.000 0.00 0.00 0.00 2.71
3548 9690 0.446222 CGTTGGAACCGGCACTAATG 59.554 55.000 0.00 1.62 0.00 1.90
3549 9691 0.675522 CCGTTGGAACCGGCACTAAT 60.676 55.000 0.00 0.00 38.85 1.73
3550 9692 1.301874 CCGTTGGAACCGGCACTAA 60.302 57.895 0.00 0.00 38.85 2.24
3551 9693 2.344500 CCGTTGGAACCGGCACTA 59.656 61.111 0.00 0.00 38.85 2.74
3557 9699 1.740296 CACCTAGCCGTTGGAACCG 60.740 63.158 0.00 0.00 0.00 4.44
3558 9700 1.376812 CCACCTAGCCGTTGGAACC 60.377 63.158 0.00 0.00 0.00 3.62
3559 9701 1.376812 CCCACCTAGCCGTTGGAAC 60.377 63.158 0.00 0.00 0.00 3.62
3560 9702 3.074281 CCCACCTAGCCGTTGGAA 58.926 61.111 0.00 0.00 0.00 3.53
3561 9703 3.712907 GCCCACCTAGCCGTTGGA 61.713 66.667 0.00 0.00 0.00 3.53
3562 9704 4.796495 GGCCCACCTAGCCGTTGG 62.796 72.222 0.00 0.00 41.41 3.77
3576 9718 0.179081 CAGTACTAAAGGGAGCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
3577 9719 0.822164 TCAGTACTAAAGGGAGCGGC 59.178 55.000 0.00 0.00 0.00 6.53
3578 9720 3.718815 GAATCAGTACTAAAGGGAGCGG 58.281 50.000 0.00 0.00 0.00 5.52
3579 9721 3.181489 ACGAATCAGTACTAAAGGGAGCG 60.181 47.826 0.00 0.00 0.00 5.03
3580 9722 4.113354 CACGAATCAGTACTAAAGGGAGC 58.887 47.826 0.00 0.00 0.00 4.70
3581 9723 4.401519 TCCACGAATCAGTACTAAAGGGAG 59.598 45.833 0.00 0.00 0.00 4.30
3582 9724 4.346730 TCCACGAATCAGTACTAAAGGGA 58.653 43.478 0.00 0.00 0.00 4.20
3583 9725 4.401519 TCTCCACGAATCAGTACTAAAGGG 59.598 45.833 0.00 0.00 0.00 3.95
3584 9726 5.578005 TCTCCACGAATCAGTACTAAAGG 57.422 43.478 0.00 0.00 0.00 3.11
3585 9727 5.805994 GGTTCTCCACGAATCAGTACTAAAG 59.194 44.000 0.00 0.00 32.81 1.85
3586 9728 5.479375 AGGTTCTCCACGAATCAGTACTAAA 59.521 40.000 0.00 0.00 35.10 1.85
3587 9729 5.014858 AGGTTCTCCACGAATCAGTACTAA 58.985 41.667 0.00 0.00 35.10 2.24
3588 9730 4.597004 AGGTTCTCCACGAATCAGTACTA 58.403 43.478 0.00 0.00 35.10 1.82
3589 9731 3.432378 AGGTTCTCCACGAATCAGTACT 58.568 45.455 0.00 0.00 35.10 2.73
3590 9732 3.870633 AGGTTCTCCACGAATCAGTAC 57.129 47.619 0.00 0.00 35.10 2.73
3591 9733 4.884668 AAAGGTTCTCCACGAATCAGTA 57.115 40.909 0.00 0.00 35.10 2.74
3592 9734 3.771577 AAAGGTTCTCCACGAATCAGT 57.228 42.857 0.00 0.00 35.10 3.41
3593 9735 3.619038 GCTAAAGGTTCTCCACGAATCAG 59.381 47.826 0.00 0.00 35.10 2.90
3594 9736 3.007506 TGCTAAAGGTTCTCCACGAATCA 59.992 43.478 0.00 0.00 35.10 2.57
3595 9737 3.596214 TGCTAAAGGTTCTCCACGAATC 58.404 45.455 0.00 0.00 33.45 2.52
3596 9738 3.695830 TGCTAAAGGTTCTCCACGAAT 57.304 42.857 0.00 0.00 33.45 3.34
3597 9739 3.596214 GATGCTAAAGGTTCTCCACGAA 58.404 45.455 0.00 0.00 35.89 3.85
3598 9740 2.416836 CGATGCTAAAGGTTCTCCACGA 60.417 50.000 0.00 0.00 35.89 4.35
3599 9741 1.927174 CGATGCTAAAGGTTCTCCACG 59.073 52.381 0.00 0.00 35.89 4.94
3600 9742 2.280628 CCGATGCTAAAGGTTCTCCAC 58.719 52.381 0.00 0.00 35.89 4.02
3601 9743 1.906574 ACCGATGCTAAAGGTTCTCCA 59.093 47.619 0.00 0.00 33.96 3.86
3602 9744 2.693267 ACCGATGCTAAAGGTTCTCC 57.307 50.000 0.00 0.00 33.96 3.71
3607 9749 1.001633 ACACGAACCGATGCTAAAGGT 59.998 47.619 0.00 0.00 40.50 3.50
3608 9750 1.659098 GACACGAACCGATGCTAAAGG 59.341 52.381 0.00 0.00 0.00 3.11
3609 9751 2.092211 GTGACACGAACCGATGCTAAAG 59.908 50.000 0.00 0.00 0.00 1.85
3610 9752 2.063266 GTGACACGAACCGATGCTAAA 58.937 47.619 0.00 0.00 0.00 1.85
3611 9753 1.705256 GTGACACGAACCGATGCTAA 58.295 50.000 0.00 0.00 0.00 3.09
3612 9754 0.455464 CGTGACACGAACCGATGCTA 60.455 55.000 23.39 0.00 46.05 3.49
3613 9755 1.733041 CGTGACACGAACCGATGCT 60.733 57.895 23.39 0.00 46.05 3.79
3614 9756 2.769617 CGTGACACGAACCGATGC 59.230 61.111 23.39 0.00 46.05 3.91
3623 9765 0.516877 TAGTACCGGTTCGTGACACG 59.483 55.000 21.88 21.88 44.19 4.49
3624 9766 2.704725 TTAGTACCGGTTCGTGACAC 57.295 50.000 15.04 1.99 0.00 3.67
3625 9767 3.724508 TTTTAGTACCGGTTCGTGACA 57.275 42.857 15.04 0.00 0.00 3.58
3626 9768 3.120889 GCTTTTTAGTACCGGTTCGTGAC 60.121 47.826 15.04 3.84 0.00 3.67
3627 9769 3.059166 GCTTTTTAGTACCGGTTCGTGA 58.941 45.455 15.04 0.00 0.00 4.35
3628 9770 2.159934 CGCTTTTTAGTACCGGTTCGTG 60.160 50.000 15.04 0.00 0.00 4.35
3629 9771 2.061028 CGCTTTTTAGTACCGGTTCGT 58.939 47.619 15.04 0.00 0.00 3.85
3630 9772 2.061028 ACGCTTTTTAGTACCGGTTCG 58.939 47.619 15.04 5.46 0.00 3.95
3631 9773 2.158254 CCACGCTTTTTAGTACCGGTTC 59.842 50.000 15.04 8.12 0.00 3.62
3632 9774 2.145536 CCACGCTTTTTAGTACCGGTT 58.854 47.619 15.04 0.00 0.00 4.44
3633 9775 1.070601 ACCACGCTTTTTAGTACCGGT 59.929 47.619 13.98 13.98 0.00 5.28
3634 9776 1.461897 CACCACGCTTTTTAGTACCGG 59.538 52.381 0.00 0.00 0.00 5.28
3635 9777 1.461897 CCACCACGCTTTTTAGTACCG 59.538 52.381 0.00 0.00 0.00 4.02
3636 9778 1.198408 GCCACCACGCTTTTTAGTACC 59.802 52.381 0.00 0.00 0.00 3.34
3637 9779 1.874872 TGCCACCACGCTTTTTAGTAC 59.125 47.619 0.00 0.00 0.00 2.73
3638 9780 2.147958 CTGCCACCACGCTTTTTAGTA 58.852 47.619 0.00 0.00 0.00 1.82
3639 9781 0.951558 CTGCCACCACGCTTTTTAGT 59.048 50.000 0.00 0.00 0.00 2.24
3640 9782 0.240945 CCTGCCACCACGCTTTTTAG 59.759 55.000 0.00 0.00 0.00 1.85
3641 9783 0.179015 TCCTGCCACCACGCTTTTTA 60.179 50.000 0.00 0.00 0.00 1.52
3642 9784 0.827507 ATCCTGCCACCACGCTTTTT 60.828 50.000 0.00 0.00 0.00 1.94
3643 9785 1.228552 ATCCTGCCACCACGCTTTT 60.229 52.632 0.00 0.00 0.00 2.27
3644 9786 1.973281 CATCCTGCCACCACGCTTT 60.973 57.895 0.00 0.00 0.00 3.51
3645 9787 2.360350 CATCCTGCCACCACGCTT 60.360 61.111 0.00 0.00 0.00 4.68
3646 9788 3.196207 AACATCCTGCCACCACGCT 62.196 57.895 0.00 0.00 0.00 5.07
3647 9789 2.672996 AACATCCTGCCACCACGC 60.673 61.111 0.00 0.00 0.00 5.34
3648 9790 1.577328 GACAACATCCTGCCACCACG 61.577 60.000 0.00 0.00 0.00 4.94
3649 9791 0.537143 TGACAACATCCTGCCACCAC 60.537 55.000 0.00 0.00 0.00 4.16
3650 9792 0.250858 CTGACAACATCCTGCCACCA 60.251 55.000 0.00 0.00 0.00 4.17
3651 9793 0.036732 TCTGACAACATCCTGCCACC 59.963 55.000 0.00 0.00 0.00 4.61
3652 9794 1.160137 GTCTGACAACATCCTGCCAC 58.840 55.000 2.24 0.00 0.00 5.01
3653 9795 0.036732 GGTCTGACAACATCCTGCCA 59.963 55.000 10.38 0.00 0.00 4.92
3654 9796 1.021390 CGGTCTGACAACATCCTGCC 61.021 60.000 10.38 0.00 0.00 4.85
3655 9797 1.021390 CCGGTCTGACAACATCCTGC 61.021 60.000 10.38 0.00 0.00 4.85
3656 9798 0.391661 CCCGGTCTGACAACATCCTG 60.392 60.000 10.38 0.00 0.00 3.86
3657 9799 0.544357 TCCCGGTCTGACAACATCCT 60.544 55.000 10.38 0.00 0.00 3.24
3658 9800 0.391263 GTCCCGGTCTGACAACATCC 60.391 60.000 10.38 0.00 32.91 3.51
3659 9801 0.391263 GGTCCCGGTCTGACAACATC 60.391 60.000 10.38 0.00 34.36 3.06
3660 9802 1.677552 GGTCCCGGTCTGACAACAT 59.322 57.895 10.38 0.00 34.36 2.71
3661 9803 2.513259 GGGTCCCGGTCTGACAACA 61.513 63.158 10.38 0.00 34.36 3.33
3662 9804 2.346365 GGGTCCCGGTCTGACAAC 59.654 66.667 10.38 2.18 34.36 3.32
3663 9805 3.307906 CGGGTCCCGGTCTGACAA 61.308 66.667 23.59 0.00 44.15 3.18
3675 9817 0.391263 CTAAAGGTGCTGGACGGGTC 60.391 60.000 0.00 0.00 0.00 4.46
3676 9818 1.125711 ACTAAAGGTGCTGGACGGGT 61.126 55.000 0.00 0.00 0.00 5.28
3677 9819 0.899720 TACTAAAGGTGCTGGACGGG 59.100 55.000 0.00 0.00 0.00 5.28
3678 9820 1.405121 GGTACTAAAGGTGCTGGACGG 60.405 57.143 0.00 0.00 0.00 4.79
3679 9821 1.734707 CGGTACTAAAGGTGCTGGACG 60.735 57.143 0.00 0.00 34.04 4.79
3680 9822 2.005971 CGGTACTAAAGGTGCTGGAC 57.994 55.000 0.00 0.00 34.04 4.02
3683 9825 2.028385 AGAACCGGTACTAAAGGTGCTG 60.028 50.000 8.00 0.00 42.17 4.41
3684 9826 2.254508 AGAACCGGTACTAAAGGTGCT 58.745 47.619 8.00 5.44 39.06 4.40
3685 9827 2.740447 CAAGAACCGGTACTAAAGGTGC 59.260 50.000 8.00 0.00 38.44 5.01
3686 9828 2.740447 GCAAGAACCGGTACTAAAGGTG 59.260 50.000 8.00 0.00 38.44 4.00
3687 9829 2.289882 GGCAAGAACCGGTACTAAAGGT 60.290 50.000 8.00 0.00 40.50 3.50
3688 9830 2.289819 TGGCAAGAACCGGTACTAAAGG 60.290 50.000 8.00 0.00 0.00 3.11
3689 9831 2.740447 GTGGCAAGAACCGGTACTAAAG 59.260 50.000 8.00 0.00 0.00 1.85
3690 9832 2.769893 GTGGCAAGAACCGGTACTAAA 58.230 47.619 8.00 0.00 0.00 1.85
3691 9833 1.337074 CGTGGCAAGAACCGGTACTAA 60.337 52.381 8.00 0.00 0.00 2.24
3692 9834 0.244450 CGTGGCAAGAACCGGTACTA 59.756 55.000 8.00 0.00 0.00 1.82
3693 9835 1.005394 CGTGGCAAGAACCGGTACT 60.005 57.895 8.00 0.00 0.00 2.73
3694 9836 0.600782 TTCGTGGCAAGAACCGGTAC 60.601 55.000 8.00 0.00 0.00 3.34
3695 9837 0.600782 GTTCGTGGCAAGAACCGGTA 60.601 55.000 28.57 0.77 41.38 4.02
3696 9838 1.890510 GTTCGTGGCAAGAACCGGT 60.891 57.895 28.57 0.00 41.38 5.28
3697 9839 2.943653 GTTCGTGGCAAGAACCGG 59.056 61.111 28.57 0.00 41.38 5.28
3700 9842 0.600782 TACCGGTTCGTGGCAAGAAC 60.601 55.000 30.13 30.13 45.16 3.01
3701 9843 0.600782 GTACCGGTTCGTGGCAAGAA 60.601 55.000 15.04 11.88 0.00 2.52
3702 9844 1.005867 GTACCGGTTCGTGGCAAGA 60.006 57.895 15.04 0.00 0.00 3.02
3703 9845 0.244450 TAGTACCGGTTCGTGGCAAG 59.756 55.000 15.04 0.00 0.00 4.01
3704 9846 0.896923 ATAGTACCGGTTCGTGGCAA 59.103 50.000 15.04 0.00 0.00 4.52
3705 9847 1.677576 CTATAGTACCGGTTCGTGGCA 59.322 52.381 15.04 0.00 0.00 4.92
3706 9848 1.000938 CCTATAGTACCGGTTCGTGGC 60.001 57.143 15.04 0.00 0.00 5.01
3707 9849 2.291741 GACCTATAGTACCGGTTCGTGG 59.708 54.545 15.04 12.34 0.00 4.94
3708 9850 2.032549 CGACCTATAGTACCGGTTCGTG 60.033 54.545 15.04 0.51 0.00 4.35
3709 9851 2.213499 CGACCTATAGTACCGGTTCGT 58.787 52.381 15.04 4.78 0.00 3.85
3710 9852 2.213499 ACGACCTATAGTACCGGTTCG 58.787 52.381 15.04 16.33 0.00 3.95
3711 9853 2.550180 GGACGACCTATAGTACCGGTTC 59.450 54.545 15.04 8.12 0.00 3.62
3712 9854 2.173569 AGGACGACCTATAGTACCGGTT 59.826 50.000 15.04 0.00 45.83 4.44
3713 9855 1.771255 AGGACGACCTATAGTACCGGT 59.229 52.381 13.98 13.98 45.83 5.28
3714 9856 2.557920 AGGACGACCTATAGTACCGG 57.442 55.000 4.08 0.00 45.83 5.28
3723 9865 5.957132 AGGGTTTATATGTAGGACGACCTA 58.043 41.667 9.70 9.70 45.83 3.08
3725 9867 5.536260 GAAGGGTTTATATGTAGGACGACC 58.464 45.833 0.00 0.00 0.00 4.79
3726 9868 5.218139 CGAAGGGTTTATATGTAGGACGAC 58.782 45.833 0.00 0.00 0.00 4.34
3727 9869 4.889409 ACGAAGGGTTTATATGTAGGACGA 59.111 41.667 0.00 0.00 0.00 4.20
3728 9870 5.009410 AGACGAAGGGTTTATATGTAGGACG 59.991 44.000 0.00 0.00 0.00 4.79
3729 9871 6.402456 AGACGAAGGGTTTATATGTAGGAC 57.598 41.667 0.00 0.00 0.00 3.85
3730 9872 6.208204 GCTAGACGAAGGGTTTATATGTAGGA 59.792 42.308 0.00 0.00 0.00 2.94
3731 9873 6.208994 AGCTAGACGAAGGGTTTATATGTAGG 59.791 42.308 0.00 0.00 0.00 3.18
3732 9874 7.040617 TGAGCTAGACGAAGGGTTTATATGTAG 60.041 40.741 0.00 0.00 0.00 2.74
3733 9875 6.774170 TGAGCTAGACGAAGGGTTTATATGTA 59.226 38.462 0.00 0.00 0.00 2.29
3734 9876 5.597182 TGAGCTAGACGAAGGGTTTATATGT 59.403 40.000 0.00 0.00 0.00 2.29
3735 9877 5.921408 GTGAGCTAGACGAAGGGTTTATATG 59.079 44.000 0.00 0.00 0.00 1.78
3736 9878 5.834204 AGTGAGCTAGACGAAGGGTTTATAT 59.166 40.000 0.00 0.00 0.00 0.86
3737 9879 5.198965 AGTGAGCTAGACGAAGGGTTTATA 58.801 41.667 0.00 0.00 0.00 0.98
3738 9880 4.024670 AGTGAGCTAGACGAAGGGTTTAT 58.975 43.478 0.00 0.00 0.00 1.40
3739 9881 3.428532 AGTGAGCTAGACGAAGGGTTTA 58.571 45.455 0.00 0.00 0.00 2.01
3740 9882 2.231721 GAGTGAGCTAGACGAAGGGTTT 59.768 50.000 0.00 0.00 0.00 3.27
3741 9883 1.819903 GAGTGAGCTAGACGAAGGGTT 59.180 52.381 0.00 0.00 0.00 4.11
3742 9884 1.004979 AGAGTGAGCTAGACGAAGGGT 59.995 52.381 0.00 0.00 0.00 4.34
3743 9885 1.403679 CAGAGTGAGCTAGACGAAGGG 59.596 57.143 0.00 0.00 0.00 3.95
3744 9886 2.088423 ACAGAGTGAGCTAGACGAAGG 58.912 52.381 0.00 0.00 0.00 3.46
3745 9887 3.438781 AGAACAGAGTGAGCTAGACGAAG 59.561 47.826 0.00 0.00 0.00 3.79
3746 9888 3.413327 AGAACAGAGTGAGCTAGACGAA 58.587 45.455 0.00 0.00 0.00 3.85
3747 9889 3.060736 AGAACAGAGTGAGCTAGACGA 57.939 47.619 0.00 0.00 0.00 4.20
3748 9890 3.426963 GGAAGAACAGAGTGAGCTAGACG 60.427 52.174 0.00 0.00 0.00 4.18
3749 9891 3.119280 GGGAAGAACAGAGTGAGCTAGAC 60.119 52.174 0.00 0.00 0.00 2.59
3750 9892 3.093057 GGGAAGAACAGAGTGAGCTAGA 58.907 50.000 0.00 0.00 0.00 2.43
3751 9893 2.167487 GGGGAAGAACAGAGTGAGCTAG 59.833 54.545 0.00 0.00 0.00 3.42
3752 9894 2.180276 GGGGAAGAACAGAGTGAGCTA 58.820 52.381 0.00 0.00 0.00 3.32
3753 9895 0.980423 GGGGAAGAACAGAGTGAGCT 59.020 55.000 0.00 0.00 0.00 4.09
3754 9896 0.035915 GGGGGAAGAACAGAGTGAGC 60.036 60.000 0.00 0.00 0.00 4.26
3755 9897 1.650528 AGGGGGAAGAACAGAGTGAG 58.349 55.000 0.00 0.00 0.00 3.51
3756 9898 1.978580 GAAGGGGGAAGAACAGAGTGA 59.021 52.381 0.00 0.00 0.00 3.41
3757 9899 1.003696 GGAAGGGGGAAGAACAGAGTG 59.996 57.143 0.00 0.00 0.00 3.51
3758 9900 1.363246 GGAAGGGGGAAGAACAGAGT 58.637 55.000 0.00 0.00 0.00 3.24
3759 9901 0.621082 GGGAAGGGGGAAGAACAGAG 59.379 60.000 0.00 0.00 0.00 3.35
3760 9902 0.845102 GGGGAAGGGGGAAGAACAGA 60.845 60.000 0.00 0.00 0.00 3.41
3761 9903 1.691823 GGGGAAGGGGGAAGAACAG 59.308 63.158 0.00 0.00 0.00 3.16
3762 9904 1.855451 GGGGGAAGGGGGAAGAACA 60.855 63.158 0.00 0.00 0.00 3.18
3763 9905 1.544151 AGGGGGAAGGGGGAAGAAC 60.544 63.158 0.00 0.00 0.00 3.01
3764 9906 1.230182 GAGGGGGAAGGGGGAAGAA 60.230 63.158 0.00 0.00 0.00 2.52
3765 9907 2.191846 AGAGGGGGAAGGGGGAAGA 61.192 63.158 0.00 0.00 0.00 2.87
3766 9908 1.694525 GAGAGGGGGAAGGGGGAAG 60.695 68.421 0.00 0.00 0.00 3.46
3767 9909 2.459710 GAGAGGGGGAAGGGGGAA 59.540 66.667 0.00 0.00 0.00 3.97
3768 9910 3.707189 GGAGAGGGGGAAGGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
3769 9911 3.711782 AGGAGAGGGGGAAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
3770 9912 2.040359 GAGGAGAGGGGGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
3771 9913 1.074850 GAGAGGAGAGGGGGAAGGG 60.075 68.421 0.00 0.00 0.00 3.95
3772 9914 1.074850 GGAGAGGAGAGGGGGAAGG 60.075 68.421 0.00 0.00 0.00 3.46
3773 9915 0.105709 GAGGAGAGGAGAGGGGGAAG 60.106 65.000 0.00 0.00 0.00 3.46
3774 9916 0.556380 AGAGGAGAGGAGAGGGGGAA 60.556 60.000 0.00 0.00 0.00 3.97
3775 9917 0.996762 GAGAGGAGAGGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
3776 9918 0.998945 AGAGAGGAGAGGAGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
3777 9919 0.185901 CAGAGAGGAGAGGAGAGGGG 59.814 65.000 0.00 0.00 0.00 4.79
3778 9920 0.926293 ACAGAGAGGAGAGGAGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
3779 9921 2.242196 AGAACAGAGAGGAGAGGAGAGG 59.758 54.545 0.00 0.00 0.00 3.69
3780 9922 3.652057 AGAACAGAGAGGAGAGGAGAG 57.348 52.381 0.00 0.00 0.00 3.20
3781 9923 3.308832 GGAAGAACAGAGAGGAGAGGAGA 60.309 52.174 0.00 0.00 0.00 3.71
3782 9924 3.023832 GGAAGAACAGAGAGGAGAGGAG 58.976 54.545 0.00 0.00 0.00 3.69
3783 9925 2.652348 AGGAAGAACAGAGAGGAGAGGA 59.348 50.000 0.00 0.00 0.00 3.71
3784 9926 3.023832 GAGGAAGAACAGAGAGGAGAGG 58.976 54.545 0.00 0.00 0.00 3.69
3785 9927 3.968265 AGAGGAAGAACAGAGAGGAGAG 58.032 50.000 0.00 0.00 0.00 3.20
3786 9928 4.044065 AGAAGAGGAAGAACAGAGAGGAGA 59.956 45.833 0.00 0.00 0.00 3.71
3787 9929 4.344104 AGAAGAGGAAGAACAGAGAGGAG 58.656 47.826 0.00 0.00 0.00 3.69
3788 9930 4.340617 GAGAAGAGGAAGAACAGAGAGGA 58.659 47.826 0.00 0.00 0.00 3.71
3789 9931 3.447229 GGAGAAGAGGAAGAACAGAGAGG 59.553 52.174 0.00 0.00 0.00 3.69
3790 9932 3.447229 GGGAGAAGAGGAAGAACAGAGAG 59.553 52.174 0.00 0.00 0.00 3.20
3791 9933 3.436243 GGGAGAAGAGGAAGAACAGAGA 58.564 50.000 0.00 0.00 0.00 3.10
3792 9934 2.499693 GGGGAGAAGAGGAAGAACAGAG 59.500 54.545 0.00 0.00 0.00 3.35
3793 9935 2.112691 AGGGGAGAAGAGGAAGAACAGA 59.887 50.000 0.00 0.00 0.00 3.41
3794 9936 2.499693 GAGGGGAGAAGAGGAAGAACAG 59.500 54.545 0.00 0.00 0.00 3.16
3795 9937 2.541466 GAGGGGAGAAGAGGAAGAACA 58.459 52.381 0.00 0.00 0.00 3.18
3796 9938 1.478916 CGAGGGGAGAAGAGGAAGAAC 59.521 57.143 0.00 0.00 0.00 3.01
3797 9939 1.358103 TCGAGGGGAGAAGAGGAAGAA 59.642 52.381 0.00 0.00 0.00 2.52
3798 9940 1.000496 TCGAGGGGAGAAGAGGAAGA 59.000 55.000 0.00 0.00 0.00 2.87
3799 9941 1.398692 CTCGAGGGGAGAAGAGGAAG 58.601 60.000 3.91 0.00 46.23 3.46
3800 9942 0.684805 GCTCGAGGGGAGAAGAGGAA 60.685 60.000 15.58 0.00 46.23 3.36
3801 9943 1.076632 GCTCGAGGGGAGAAGAGGA 60.077 63.158 15.58 0.00 46.23 3.71
3802 9944 1.076339 AGCTCGAGGGGAGAAGAGG 60.076 63.158 15.58 0.00 46.23 3.69
3803 9945 0.395036 TGAGCTCGAGGGGAGAAGAG 60.395 60.000 15.58 0.00 46.23 2.85
3804 9946 0.260230 ATGAGCTCGAGGGGAGAAGA 59.740 55.000 15.58 0.00 46.23 2.87
3805 9947 0.673437 GATGAGCTCGAGGGGAGAAG 59.327 60.000 15.58 0.00 46.23 2.85
3806 9948 0.033109 TGATGAGCTCGAGGGGAGAA 60.033 55.000 15.58 0.00 46.23 2.87
3807 9949 0.753479 GTGATGAGCTCGAGGGGAGA 60.753 60.000 15.58 0.00 46.23 3.71
3808 9950 1.039785 TGTGATGAGCTCGAGGGGAG 61.040 60.000 15.58 0.00 46.06 4.30
3809 9951 1.000359 TGTGATGAGCTCGAGGGGA 60.000 57.895 15.58 0.00 0.00 4.81
3810 9952 1.142748 GTGTGATGAGCTCGAGGGG 59.857 63.158 15.58 0.00 0.00 4.79
3811 9953 0.463204 ATGTGTGATGAGCTCGAGGG 59.537 55.000 15.58 0.00 0.00 4.30
3812 9954 2.306341 AATGTGTGATGAGCTCGAGG 57.694 50.000 15.58 0.00 0.00 4.63
3813 9955 3.727079 GCAAAATGTGTGATGAGCTCGAG 60.727 47.826 8.45 8.45 0.00 4.04
3814 9956 2.160219 GCAAAATGTGTGATGAGCTCGA 59.840 45.455 9.64 0.00 0.00 4.04
3815 9957 2.512885 GCAAAATGTGTGATGAGCTCG 58.487 47.619 9.64 0.00 0.00 5.03
3816 9958 2.416431 GGGCAAAATGTGTGATGAGCTC 60.416 50.000 6.82 6.82 0.00 4.09
3817 9959 1.547372 GGGCAAAATGTGTGATGAGCT 59.453 47.619 0.00 0.00 0.00 4.09
3818 9960 1.273048 TGGGCAAAATGTGTGATGAGC 59.727 47.619 0.00 0.00 0.00 4.26
3819 9961 3.663995 TTGGGCAAAATGTGTGATGAG 57.336 42.857 0.00 0.00 0.00 2.90
3820 9962 4.620589 ATTTGGGCAAAATGTGTGATGA 57.379 36.364 0.00 0.00 37.09 2.92
3821 9963 5.692613 AAATTTGGGCAAAATGTGTGATG 57.307 34.783 0.00 0.00 38.52 3.07
3822 9964 5.593502 ACAAAATTTGGGCAAAATGTGTGAT 59.406 32.000 13.43 0.00 38.52 3.06
3823 9965 4.946157 ACAAAATTTGGGCAAAATGTGTGA 59.054 33.333 13.43 0.00 38.52 3.58
3824 9966 5.246145 ACAAAATTTGGGCAAAATGTGTG 57.754 34.783 13.43 8.95 38.52 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.