Multiple sequence alignment - TraesCS3B01G596700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G596700 chr3B 100.000 6359 0 0 1 6359 819508260 819501902 0.000000e+00 11743.0
1 TraesCS3B01G596700 chr3B 86.430 2933 319 48 2768 5648 819366187 819363282 0.000000e+00 3138.0
2 TraesCS3B01G596700 chr3B 86.200 2674 304 39 2768 5396 819189259 819186606 0.000000e+00 2833.0
3 TraesCS3B01G596700 chr3B 88.407 1751 159 26 3931 5671 819280657 819278941 0.000000e+00 2069.0
4 TraesCS3B01G596700 chr3B 85.729 1997 215 41 3704 5671 819630833 819628878 0.000000e+00 2045.0
5 TraesCS3B01G596700 chr3B 86.196 1927 222 18 1 1920 819635616 819633727 0.000000e+00 2045.0
6 TraesCS3B01G596700 chr3B 83.138 1708 220 35 302 1990 819285392 819283734 0.000000e+00 1496.0
7 TraesCS3B01G596700 chr3B 85.968 1297 165 11 333 1622 819368698 819367412 0.000000e+00 1371.0
8 TraesCS3B01G596700 chr3B 91.033 881 70 3 4178 5054 818334104 818334979 0.000000e+00 1181.0
9 TraesCS3B01G596700 chr3B 82.140 1383 204 26 611 1981 819192543 819191192 0.000000e+00 1146.0
10 TraesCS3B01G596700 chr3B 95.184 706 29 3 5656 6359 827013724 827014426 0.000000e+00 1110.0
11 TraesCS3B01G596700 chr3B 95.184 706 29 3 5656 6359 827559690 827560392 0.000000e+00 1110.0
12 TraesCS3B01G596700 chr3B 93.372 694 39 4 5669 6359 795427405 795428094 0.000000e+00 1020.0
13 TraesCS3B01G596700 chr3B 80.879 1161 177 19 2768 3895 819281801 819280653 0.000000e+00 872.0
14 TraesCS3B01G596700 chr3B 92.581 310 21 2 1 310 819288247 819287940 1.630000e-120 444.0
15 TraesCS3B01G596700 chr3B 91.078 269 22 2 1 268 819370697 819370430 4.690000e-96 363.0
16 TraesCS3B01G596700 chr3A 85.246 2840 315 50 2768 5557 742323232 742320447 0.000000e+00 2828.0
17 TraesCS3B01G596700 chr3A 87.191 1780 180 29 3882 5648 742239217 742237473 0.000000e+00 1980.0
18 TraesCS3B01G596700 chr3A 84.418 1675 230 18 333 1990 742327491 742325831 0.000000e+00 1618.0
19 TraesCS3B01G596700 chr3A 80.098 2045 304 61 450 2440 742243502 742241507 0.000000e+00 1426.0
20 TraesCS3B01G596700 chr3A 82.141 1635 239 23 391 1995 742229024 742227413 0.000000e+00 1352.0
21 TraesCS3B01G596700 chr3A 88.046 870 83 9 4779 5638 742212469 742211611 0.000000e+00 1011.0
22 TraesCS3B01G596700 chr3A 81.092 989 148 26 2731 3689 742240539 742239560 0.000000e+00 754.0
23 TraesCS3B01G596700 chr3A 91.071 224 17 2 1 221 742329164 742328941 3.730000e-77 300.0
24 TraesCS3B01G596700 chr3A 83.721 86 11 3 218 302 94861005 94861088 1.900000e-10 78.7
25 TraesCS3B01G596700 chr3D 88.684 1732 166 22 3838 5557 608925581 608923868 0.000000e+00 2085.0
26 TraesCS3B01G596700 chr3D 83.017 1631 224 30 383 1995 608932037 608930442 0.000000e+00 1428.0
27 TraesCS3B01G596700 chr3D 78.364 1100 193 24 2732 3799 608926797 608925711 0.000000e+00 671.0
28 TraesCS3B01G596700 chr3D 88.956 498 49 6 452 945 608968740 608968245 1.520000e-170 610.0
29 TraesCS3B01G596700 chr3D 91.525 236 19 1 1 236 608972587 608972353 2.210000e-84 324.0
30 TraesCS3B01G596700 chr3D 94.366 142 8 0 1 142 608933959 608933818 1.070000e-52 219.0
31 TraesCS3B01G596700 chr6B 82.220 928 158 6 4281 5206 37632913 37633835 0.000000e+00 793.0
32 TraesCS3B01G596700 chr1D 81.395 172 31 1 786 957 55428381 55428211 8.600000e-29 139.0
33 TraesCS3B01G596700 chr6A 88.095 84 8 2 218 300 598927968 598927886 1.460000e-16 99.0
34 TraesCS3B01G596700 chr5D 84.694 98 13 2 6132 6229 553674742 553674837 5.250000e-16 97.1
35 TraesCS3B01G596700 chr2D 88.889 72 8 0 6132 6203 564920741 564920670 8.780000e-14 89.8
36 TraesCS3B01G596700 chr2B 85.542 83 12 0 6132 6214 676588071 676587989 3.160000e-13 87.9
37 TraesCS3B01G596700 chr2B 85.294 68 10 0 1551 1618 775357883 775357950 3.180000e-08 71.3
38 TraesCS3B01G596700 chr4B 86.842 76 9 1 6129 6204 72645568 72645642 4.090000e-12 84.2
39 TraesCS3B01G596700 chr5B 82.474 97 14 2 6120 6214 47047243 47047338 1.470000e-11 82.4
40 TraesCS3B01G596700 chr5B 82.474 97 14 2 6120 6214 47081624 47081719 1.470000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G596700 chr3B 819501902 819508260 6358 True 11743.000000 11743 100.000000 1 6359 1 chr3B.!!$R1 6358
1 TraesCS3B01G596700 chr3B 819628878 819635616 6738 True 2045.000000 2045 85.962500 1 5671 2 chr3B.!!$R5 5670
2 TraesCS3B01G596700 chr3B 819186606 819192543 5937 True 1989.500000 2833 84.170000 611 5396 2 chr3B.!!$R2 4785
3 TraesCS3B01G596700 chr3B 819363282 819370697 7415 True 1624.000000 3138 87.825333 1 5648 3 chr3B.!!$R4 5647
4 TraesCS3B01G596700 chr3B 819278941 819288247 9306 True 1220.250000 2069 86.251250 1 5671 4 chr3B.!!$R3 5670
5 TraesCS3B01G596700 chr3B 818334104 818334979 875 False 1181.000000 1181 91.033000 4178 5054 1 chr3B.!!$F2 876
6 TraesCS3B01G596700 chr3B 827013724 827014426 702 False 1110.000000 1110 95.184000 5656 6359 1 chr3B.!!$F3 703
7 TraesCS3B01G596700 chr3B 827559690 827560392 702 False 1110.000000 1110 95.184000 5656 6359 1 chr3B.!!$F4 703
8 TraesCS3B01G596700 chr3B 795427405 795428094 689 False 1020.000000 1020 93.372000 5669 6359 1 chr3B.!!$F1 690
9 TraesCS3B01G596700 chr3A 742320447 742329164 8717 True 1582.000000 2828 86.911667 1 5557 3 chr3A.!!$R4 5556
10 TraesCS3B01G596700 chr3A 742237473 742243502 6029 True 1386.666667 1980 82.793667 450 5648 3 chr3A.!!$R3 5198
11 TraesCS3B01G596700 chr3A 742227413 742229024 1611 True 1352.000000 1352 82.141000 391 1995 1 chr3A.!!$R2 1604
12 TraesCS3B01G596700 chr3A 742211611 742212469 858 True 1011.000000 1011 88.046000 4779 5638 1 chr3A.!!$R1 859
13 TraesCS3B01G596700 chr3D 608923868 608933959 10091 True 1100.750000 2085 86.107750 1 5557 4 chr3D.!!$R1 5556
14 TraesCS3B01G596700 chr3D 608968245 608972587 4342 True 467.000000 610 90.240500 1 945 2 chr3D.!!$R2 944
15 TraesCS3B01G596700 chr6B 37632913 37633835 922 False 793.000000 793 82.220000 4281 5206 1 chr6B.!!$F1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 5864 0.179018 GGGAGGACATTTGATCCCGG 60.179 60.0 0.00 0.00 41.98 5.73 F
1149 6533 0.036732 ACGGCAATGTGACCATGAGT 59.963 50.0 0.00 0.00 0.00 3.41 F
1472 6859 0.388907 CAAGTTCCCATTTGGCTGCG 60.389 55.0 0.00 0.00 0.00 5.18 F
3122 14814 0.032540 CAGGTTGCAACTTTCAGGCC 59.967 55.0 27.64 9.82 0.00 5.19 F
3275 14976 0.032678 AGGCGCATATCTCCTTGTCG 59.967 55.0 10.83 0.00 0.00 4.35 F
3464 15165 0.178990 AGGTTCCCCAAGTTCTGCAC 60.179 55.0 0.00 0.00 0.00 4.57 F
3759 16125 0.843309 TCACTTTTGCCTCCAGGTGA 59.157 50.0 0.00 0.00 37.57 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 7046 0.404040 ACTCGCCCCAAATCAGGAAA 59.596 50.0 0.00 0.0 0.00 3.13 R
2560 11754 0.036732 TTTGCTGCAGACCTAGTGGG 59.963 55.0 20.43 0.0 41.89 4.61 R
3187 14882 0.168348 CTCGACGTAGGTGTCACTGG 59.832 60.0 2.35 0.0 38.84 4.00 R
4825 17333 0.600255 CCGAAGTCTGCGACCTTTGT 60.600 55.0 0.30 0.0 32.18 2.83 R
5231 17739 0.952659 ACCCTCCTCATATCCCCTGT 59.047 55.0 0.00 0.0 0.00 4.00 R
5290 17798 0.392461 TGCCTGGACAATACTTCGCC 60.392 55.0 0.00 0.0 0.00 5.54 R
5755 18300 0.889306 GCGTGTCTACCTCTTCACCT 59.111 55.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.321564 TTGGAATCCTGGCAGTCACG 60.322 55.000 14.43 0.00 0.00 4.35
152 157 5.044558 GCTAGCTTGTGTATTCTACCACTC 58.955 45.833 7.70 0.00 0.00 3.51
244 295 2.509131 TGTCCTGGATTATGGATGCACA 59.491 45.455 0.00 0.00 34.58 4.57
302 353 4.159135 GGACCCGTCTACAGTTGAAGAATA 59.841 45.833 0.00 0.00 0.00 1.75
386 3066 2.266055 GCAACTCCTCCCCGTCAG 59.734 66.667 0.00 0.00 0.00 3.51
402 3082 1.116308 TCAGGTTTCACACTCCACGA 58.884 50.000 0.00 0.00 0.00 4.35
405 3085 1.228657 GGTTTCACACTCCACGAGGC 61.229 60.000 0.00 0.00 33.35 4.70
406 3086 0.531974 GTTTCACACTCCACGAGGCA 60.532 55.000 0.00 0.00 33.35 4.75
485 5845 3.058501 GGTACACGTTTTTGACAGATGGG 60.059 47.826 0.00 0.00 0.00 4.00
498 5859 2.854967 ACAGATGGGGAGGACATTTGAT 59.145 45.455 0.00 0.00 34.94 2.57
503 5864 0.179018 GGGAGGACATTTGATCCCGG 60.179 60.000 0.00 0.00 41.98 5.73
544 5908 5.888724 TGGTTCTCACTTGTCCAAAATTACA 59.111 36.000 0.00 0.00 0.00 2.41
648 6024 1.063616 CTTGAGAGCGATGCATGGTTG 59.936 52.381 2.46 0.00 0.00 3.77
701 6081 1.094785 ACTCAATGGCGCACATAACC 58.905 50.000 10.83 0.00 39.40 2.85
725 6106 1.203441 TCTTGAGGGTGCTGATGGCT 61.203 55.000 0.00 0.00 42.39 4.75
966 6350 3.891366 CCAAAGTCCAAGAGTTGTCCATT 59.109 43.478 0.00 0.00 0.00 3.16
972 6356 7.259088 AGTCCAAGAGTTGTCCATTAGTAAT 57.741 36.000 0.00 0.00 0.00 1.89
973 6357 7.106239 AGTCCAAGAGTTGTCCATTAGTAATG 58.894 38.462 14.88 14.88 38.63 1.90
988 6372 8.506168 CATTAGTAATGGGTCTACATTTGTGT 57.494 34.615 14.14 0.00 41.12 3.72
993 6377 4.431416 TGGGTCTACATTTGTGTCTGTT 57.569 40.909 0.00 0.00 0.00 3.16
995 6379 5.302360 TGGGTCTACATTTGTGTCTGTTAC 58.698 41.667 0.00 0.00 0.00 2.50
1012 6396 2.595124 TACACACATGGGCGACATAG 57.405 50.000 0.00 0.00 37.84 2.23
1055 6439 4.587189 GCTCGGCGGCGGTCTTAT 62.587 66.667 31.73 0.00 0.00 1.73
1059 6443 2.185867 GGCGGCGGTCTTATGACA 59.814 61.111 9.78 0.00 44.61 3.58
1082 6466 1.562008 TGGGCCCTTCACGATTTCATA 59.438 47.619 25.70 0.00 0.00 2.15
1119 6503 2.904866 GGTTGCAACGTCCAGGCA 60.905 61.111 22.67 0.00 35.41 4.75
1135 6519 2.892334 GCAACGCTCAAGAACGGCA 61.892 57.895 0.00 0.00 0.00 5.69
1149 6533 0.036732 ACGGCAATGTGACCATGAGT 59.963 50.000 0.00 0.00 0.00 3.41
1150 6534 0.448990 CGGCAATGTGACCATGAGTG 59.551 55.000 0.00 0.00 0.00 3.51
1217 6601 2.320587 CCACACTCGAAGCAGGCAC 61.321 63.158 0.00 0.00 0.00 5.01
1257 6641 1.760029 TGCTGCCAGTCGGATATTGTA 59.240 47.619 0.00 0.00 0.00 2.41
1287 6674 2.573462 TGAGGTAGCAGGAATGCTTTCT 59.427 45.455 8.20 6.42 43.52 2.52
1296 6683 4.261572 GCAGGAATGCTTTCTAACAACACA 60.262 41.667 11.68 0.00 32.16 3.72
1308 6695 6.762702 TCTAACAACACATCCTATGACGTA 57.237 37.500 0.00 0.00 0.00 3.57
1393 6780 2.288579 ACGAGTTACGATTGGTTCAGCA 60.289 45.455 0.00 0.00 45.77 4.41
1402 6789 3.676049 CGATTGGTTCAGCAGTACAGCTA 60.676 47.826 12.89 0.00 44.54 3.32
1462 6849 2.754552 GCAGATGCAATACAAGTTCCCA 59.245 45.455 0.00 0.00 41.59 4.37
1471 6858 0.681175 ACAAGTTCCCATTTGGCTGC 59.319 50.000 0.00 0.00 0.00 5.25
1472 6859 0.388907 CAAGTTCCCATTTGGCTGCG 60.389 55.000 0.00 0.00 0.00 5.18
1515 6910 1.800805 CAGAATGCTCCAACGTCTGT 58.199 50.000 0.00 0.00 32.75 3.41
1627 7022 1.468914 GATGCAAAGGTCCGGTCTTTC 59.531 52.381 17.94 14.19 32.72 2.62
1634 7029 5.589050 GCAAAGGTCCGGTCTTTCTTAATAT 59.411 40.000 17.94 0.00 32.72 1.28
1637 7032 8.827677 CAAAGGTCCGGTCTTTCTTAATATTAG 58.172 37.037 17.94 4.78 32.72 1.73
1638 7033 7.672122 AGGTCCGGTCTTTCTTAATATTAGT 57.328 36.000 0.00 0.00 0.00 2.24
1639 7034 8.773033 AGGTCCGGTCTTTCTTAATATTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
1640 7035 9.377238 AGGTCCGGTCTTTCTTAATATTAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
1684 7117 3.955551 GGGGCGAGTAATAAATTTTGGGA 59.044 43.478 0.00 0.00 0.00 4.37
1706 7139 6.319911 GGGAGTTTCTCTTTGCTTAATGCTAT 59.680 38.462 0.00 0.00 43.37 2.97
1736 7181 5.801531 TGGTTCGGCTATGTGTAGATATT 57.198 39.130 0.00 0.00 0.00 1.28
1748 7196 9.264719 CTATGTGTAGATATTGATGAGTGCAAA 57.735 33.333 0.00 0.00 0.00 3.68
1751 7199 7.493645 TGTGTAGATATTGATGAGTGCAAAGAG 59.506 37.037 0.00 0.00 0.00 2.85
1753 7201 5.374921 AGATATTGATGAGTGCAAAGAGGG 58.625 41.667 0.00 0.00 0.00 4.30
1757 7208 1.556911 GATGAGTGCAAAGAGGGAGGA 59.443 52.381 0.00 0.00 0.00 3.71
1761 7212 2.501723 GAGTGCAAAGAGGGAGGATACA 59.498 50.000 0.00 0.00 41.41 2.29
1763 7214 1.207089 TGCAAAGAGGGAGGATACACG 59.793 52.381 0.00 0.00 41.41 4.49
1791 7248 5.877564 TGCTACGGTGATTGTATCAATTTGA 59.122 36.000 0.75 0.75 41.69 2.69
1796 7253 6.152661 ACGGTGATTGTATCAATTTGAATGGT 59.847 34.615 2.68 0.00 41.69 3.55
1822 7279 1.918293 ATTGCCGGTGTCCTCCAGA 60.918 57.895 1.90 0.00 0.00 3.86
1832 7289 0.991920 GTCCTCCAGAAACCCATGGA 59.008 55.000 15.22 0.00 43.34 3.41
1844 7301 1.275002 ACCCATGGAGACCCTACCATT 60.275 52.381 15.22 0.00 43.30 3.16
1856 7316 1.910580 CTACCATTCCCGGTGGCTGT 61.911 60.000 9.44 0.00 40.39 4.40
1858 7318 2.438434 CATTCCCGGTGGCTGTCC 60.438 66.667 0.00 0.00 0.00 4.02
1920 7393 9.869757 TCATTTGTTCTTACTATCGAGATGAAA 57.130 29.630 0.00 0.00 0.00 2.69
1929 7402 6.595772 ACTATCGAGATGAAAGCAAATGAC 57.404 37.500 0.00 0.00 0.00 3.06
1930 7403 6.344500 ACTATCGAGATGAAAGCAAATGACT 58.656 36.000 0.00 0.00 0.00 3.41
1952 7530 7.041576 TGACTGATGAACAAGAAAGAACAGATG 60.042 37.037 0.00 0.00 0.00 2.90
1956 7534 8.939929 TGATGAACAAGAAAGAACAGATGATAC 58.060 33.333 0.00 0.00 0.00 2.24
1960 7538 6.542821 ACAAGAAAGAACAGATGATACCCAA 58.457 36.000 0.00 0.00 0.00 4.12
1968 7546 5.919348 ACAGATGATACCCAATCCTCAAT 57.081 39.130 0.00 0.00 33.08 2.57
2000 7579 6.824305 AAAAGTTCAATACTGGATGTCTGG 57.176 37.500 0.00 0.00 37.12 3.86
2001 7580 5.762179 AAGTTCAATACTGGATGTCTGGA 57.238 39.130 0.00 0.00 37.12 3.86
2002 7581 5.965033 AGTTCAATACTGGATGTCTGGAT 57.035 39.130 0.00 0.00 35.19 3.41
2003 7582 5.923204 AGTTCAATACTGGATGTCTGGATC 58.077 41.667 0.00 0.00 35.19 3.36
2004 7583 5.426509 AGTTCAATACTGGATGTCTGGATCA 59.573 40.000 0.00 0.00 35.19 2.92
2005 7584 5.282055 TCAATACTGGATGTCTGGATCAC 57.718 43.478 0.00 0.00 0.00 3.06
2006 7585 4.716287 TCAATACTGGATGTCTGGATCACA 59.284 41.667 0.00 0.00 0.00 3.58
2028 7607 8.128582 TCACAGAACATTCAATTAAGTGTGTTC 58.871 33.333 22.04 22.04 43.34 3.18
2034 7619 7.870826 ACATTCAATTAAGTGTGTTCGATCAA 58.129 30.769 2.43 0.00 0.00 2.57
2044 7641 3.244078 TGTGTTCGATCAACAACTAGCCT 60.244 43.478 10.87 0.00 46.90 4.58
2055 7652 5.183331 TCAACAACTAGCCTACTACTGAGTG 59.817 44.000 0.00 0.00 36.28 3.51
2075 7672 6.485313 TGAGTGGACAGTTAGTTATTTTGTGG 59.515 38.462 0.00 0.00 0.00 4.17
2080 7677 5.938322 ACAGTTAGTTATTTTGTGGCATCG 58.062 37.500 0.00 0.00 0.00 3.84
2086 7683 6.811253 AGTTATTTTGTGGCATCGTCTTAA 57.189 33.333 0.00 0.00 0.00 1.85
2101 7698 7.679638 GCATCGTCTTAAAGAATAAATGCAGGT 60.680 37.037 0.00 0.00 0.00 4.00
2102 7699 7.072177 TCGTCTTAAAGAATAAATGCAGGTG 57.928 36.000 0.00 0.00 0.00 4.00
2134 7731 8.623903 ACGACATTAACCTACGTAATAGATTGA 58.376 33.333 0.00 0.00 35.49 2.57
2176 7920 3.326747 ACATTAGTGAGACTTTGCGGAC 58.673 45.455 0.00 0.00 0.00 4.79
2180 7924 0.784778 GTGAGACTTTGCGGACTTCG 59.215 55.000 0.00 0.00 42.76 3.79
2181 7925 0.671796 TGAGACTTTGCGGACTTCGA 59.328 50.000 0.00 0.00 42.43 3.71
2270 8912 4.751098 TGCTCACTCAAATTTTGCAAATCC 59.249 37.500 13.65 0.00 0.00 3.01
2315 8957 6.561519 TTAGAGTTTAGATTTCCCTCCAGG 57.438 41.667 0.00 0.00 0.00 4.45
2396 9496 3.001838 CCAACTTAAAAAGGGCGCAAAAC 59.998 43.478 10.83 0.00 0.00 2.43
2430 9533 3.482436 TCACCACCTATGACAAACCAAC 58.518 45.455 0.00 0.00 0.00 3.77
2433 9536 2.819608 CCACCTATGACAAACCAACTGG 59.180 50.000 0.00 0.00 42.17 4.00
2436 9539 1.468520 CTATGACAAACCAACTGGCCG 59.531 52.381 0.00 0.00 39.32 6.13
2440 9543 1.265905 GACAAACCAACTGGCCGTAAG 59.734 52.381 0.00 0.00 39.32 2.34
2441 9544 1.314730 CAAACCAACTGGCCGTAAGT 58.685 50.000 0.00 0.00 39.32 2.24
2442 9545 1.265905 CAAACCAACTGGCCGTAAGTC 59.734 52.381 0.00 0.00 39.32 3.01
2481 10222 8.746922 TCTGTGAAAATCATTTTGCAGATAAC 57.253 30.769 16.76 0.00 36.85 1.89
2482 10223 7.814107 TCTGTGAAAATCATTTTGCAGATAACC 59.186 33.333 16.76 0.00 36.85 2.85
2487 10228 5.859205 ATCATTTTGCAGATAACCCTTCC 57.141 39.130 0.00 0.00 0.00 3.46
2522 10272 6.704289 TTAGCAGCAGCAAAATATTCATCT 57.296 33.333 3.17 0.00 45.49 2.90
2528 10278 7.813148 GCAGCAGCAAAATATTCATCTGATAAT 59.187 33.333 12.28 0.00 41.58 1.28
2532 10282 8.799367 CAGCAAAATATTCATCTGATAATCCCA 58.201 33.333 0.00 0.00 0.00 4.37
2533 10283 8.800332 AGCAAAATATTCATCTGATAATCCCAC 58.200 33.333 0.00 0.00 0.00 4.61
2537 10287 9.436957 AAATATTCATCTGATAATCCCACGTAC 57.563 33.333 0.00 0.00 0.00 3.67
2540 10290 5.842907 TCATCTGATAATCCCACGTACAAG 58.157 41.667 0.00 0.00 0.00 3.16
2545 10295 7.613585 TCTGATAATCCCACGTACAAGTTTTA 58.386 34.615 0.00 0.00 0.00 1.52
2568 11762 4.586306 ATTACAAAGGAACCCCACTAGG 57.414 45.455 0.00 0.00 33.88 3.02
2606 11843 6.431722 TCCATTTGGGATCCTACTAAAAAGG 58.568 40.000 12.58 10.88 42.15 3.11
2607 11844 6.218730 TCCATTTGGGATCCTACTAAAAAGGA 59.781 38.462 12.58 12.72 42.15 3.36
2610 11847 8.811994 CATTTGGGATCCTACTAAAAAGGAAAA 58.188 33.333 12.58 0.00 46.06 2.29
2613 11850 7.299134 TGGGATCCTACTAAAAAGGAAAACAA 58.701 34.615 12.58 0.00 46.06 2.83
2614 11851 7.785506 TGGGATCCTACTAAAAAGGAAAACAAA 59.214 33.333 12.58 0.00 46.06 2.83
2615 11852 8.812972 GGGATCCTACTAAAAAGGAAAACAAAT 58.187 33.333 12.58 0.00 46.06 2.32
2628 11865 8.990163 AAGGAAAACAAATAAACTACAGGAGA 57.010 30.769 0.00 0.00 0.00 3.71
2653 11890 3.868077 CAGCAGCAGTAATAGGAGAACAC 59.132 47.826 0.00 0.00 0.00 3.32
2655 11892 4.163078 AGCAGCAGTAATAGGAGAACACAT 59.837 41.667 0.00 0.00 0.00 3.21
2657 11894 4.813161 CAGCAGTAATAGGAGAACACATGG 59.187 45.833 0.00 0.00 0.00 3.66
2672 12451 3.694746 TGGTCTACCACTCTGGCG 58.305 61.111 0.00 0.00 42.67 5.69
2691 12488 8.293699 TCTGGCGATATACACTATACAATGAT 57.706 34.615 0.00 0.00 0.00 2.45
2721 12518 3.874392 AAAAATAGGCATGTGCTGTCC 57.126 42.857 4.84 0.00 41.70 4.02
2724 13141 0.179073 ATAGGCATGTGCTGTCCGAC 60.179 55.000 4.84 0.00 41.70 4.79
2729 13146 0.667487 CATGTGCTGTCCGACGAGTT 60.667 55.000 0.00 0.00 0.00 3.01
2739 13156 1.276989 TCCGACGAGTTAGCCCAAATT 59.723 47.619 0.00 0.00 0.00 1.82
2746 13163 5.497474 ACGAGTTAGCCCAAATTAATCAGT 58.503 37.500 0.00 0.00 0.00 3.41
2767 14428 8.877864 TCAGTTATTGAAATCAATGGGTACTT 57.122 30.769 16.85 0.00 45.34 2.24
2823 14488 1.076533 CACGTCCTGCGGTGATGTAC 61.077 60.000 8.11 0.00 46.52 2.90
2878 14543 1.078143 GCTACTGGCCAGGGTTCAG 60.078 63.158 35.42 22.72 34.27 3.02
2893 14558 2.419297 GGTTCAGCCTCACCTGTGATAG 60.419 54.545 0.00 0.00 39.13 2.08
2914 14579 1.595109 GCCAACAACCAGCAAAGCC 60.595 57.895 0.00 0.00 0.00 4.35
2958 14644 3.215151 GAGGACTCCTATCATGTCACGA 58.785 50.000 0.00 0.00 31.76 4.35
2975 14661 2.697751 CACGAAGATCTCCCTCCAGAAT 59.302 50.000 0.00 0.00 0.00 2.40
3025 14711 0.767375 ATCATGCCTATTCCCAGCGT 59.233 50.000 0.00 0.00 0.00 5.07
3026 14712 1.419381 TCATGCCTATTCCCAGCGTA 58.581 50.000 0.00 0.00 0.00 4.42
3028 14714 0.396811 ATGCCTATTCCCAGCGTACC 59.603 55.000 0.00 0.00 0.00 3.34
3029 14715 0.978667 TGCCTATTCCCAGCGTACCA 60.979 55.000 0.00 0.00 0.00 3.25
3030 14716 0.179468 GCCTATTCCCAGCGTACCAA 59.821 55.000 0.00 0.00 0.00 3.67
3031 14717 1.810412 GCCTATTCCCAGCGTACCAAG 60.810 57.143 0.00 0.00 0.00 3.61
3033 14719 0.179094 TATTCCCAGCGTACCAAGCG 60.179 55.000 0.00 0.00 40.04 4.68
3036 14722 2.813908 CCAGCGTACCAAGCGGTC 60.814 66.667 0.00 0.00 44.71 4.79
3056 14748 5.470098 CGGTCTTTATATGCTTGGCAACTAT 59.530 40.000 0.00 0.00 43.62 2.12
3093 14785 0.375106 GCTATCAACCAGCAACGAGC 59.625 55.000 0.00 0.00 46.19 5.03
3114 14806 3.683847 GCTCATCCTATCAGGTTGCAACT 60.684 47.826 27.64 11.65 35.53 3.16
3122 14814 0.032540 CAGGTTGCAACTTTCAGGCC 59.967 55.000 27.64 9.82 0.00 5.19
3141 14836 2.268920 CACTGACCGGGGATGGTG 59.731 66.667 6.32 3.63 44.01 4.17
3173 14868 1.898574 CAGCGGTTGTGCCTCCTTT 60.899 57.895 0.00 0.00 34.65 3.11
3187 14882 2.650778 CTTTTGCCCCTCCAACGC 59.349 61.111 0.00 0.00 0.00 4.84
3220 14915 4.056125 CGAGACGGCAGTGGAGCA 62.056 66.667 0.00 0.00 35.83 4.26
3251 14952 3.009275 TGCTATGGCATGGGCTGT 58.991 55.556 21.46 0.00 44.28 4.40
3270 14971 2.142761 TGCCAGGCGCATATCTCCT 61.143 57.895 10.83 0.00 44.64 3.69
3275 14976 0.032678 AGGCGCATATCTCCTTGTCG 59.967 55.000 10.83 0.00 0.00 4.35
3280 14981 2.748605 GCATATCTCCTTGTCGTCCAG 58.251 52.381 0.00 0.00 0.00 3.86
3321 15022 8.260114 AGTTGAATTTCCAAAATCTCAACAAGT 58.740 29.630 23.46 12.69 43.15 3.16
3332 15033 4.955811 TCTCAACAAGTACAGTGACCAT 57.044 40.909 0.00 0.00 0.00 3.55
3333 15034 6.605471 ATCTCAACAAGTACAGTGACCATA 57.395 37.500 0.00 0.00 0.00 2.74
3338 15039 3.326588 ACAAGTACAGTGACCATAAGGCA 59.673 43.478 0.00 0.00 39.06 4.75
3349 15050 1.375396 ATAAGGCAACGTCGCAGCA 60.375 52.632 0.00 0.00 46.39 4.41
3368 15069 1.460743 CACCCATACATGCTAATCGCG 59.539 52.381 0.00 0.00 43.27 5.87
3427 15128 9.071276 CATAAATATGGTAGTGCAGGAAGAATT 57.929 33.333 0.00 0.00 0.00 2.17
3464 15165 0.178990 AGGTTCCCCAAGTTCTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
3501 15202 1.645034 CTTACCACGACCAGCTGATG 58.355 55.000 17.39 6.78 0.00 3.07
3522 15223 3.574074 AAGGCGCATCCAGGCTGTT 62.574 57.895 14.43 0.00 44.05 3.16
3530 15231 0.911769 ATCCAGGCTGTTCATCGGAA 59.088 50.000 14.43 0.00 0.00 4.30
3659 15360 2.125952 GCCAACGGATGCAAAGGC 60.126 61.111 0.00 0.00 41.68 4.35
3718 16075 8.693542 TTACGCTATTAGTTTACTTGTTCCTC 57.306 34.615 0.00 0.00 0.00 3.71
3759 16125 0.843309 TCACTTTTGCCTCCAGGTGA 59.157 50.000 0.00 0.00 37.57 4.02
3766 16132 2.429930 CCTCCAGGTGACCGCAAA 59.570 61.111 0.00 0.00 0.00 3.68
3818 16210 7.511959 ACTTTCCTCCTGTTTAATTTCAGAC 57.488 36.000 6.57 0.00 34.02 3.51
3821 16213 6.139679 TCCTCCTGTTTAATTTCAGACCAT 57.860 37.500 6.57 0.00 34.02 3.55
3853 16317 6.634805 TCACTTGGTATTTGTTTCAAGCAAA 58.365 32.000 1.50 1.50 39.92 3.68
3856 16320 9.206870 CACTTGGTATTTGTTTCAAGCAAATAT 57.793 29.630 18.90 4.00 45.01 1.28
3865 16329 8.885494 TTGTTTCAAGCAAATATATATTGGCC 57.115 30.769 25.11 13.04 42.33 5.36
3872 16352 8.680903 CAAGCAAATATATATTGGCCTTCTAGG 58.319 37.037 25.11 8.57 42.33 3.02
3873 16353 8.162848 AGCAAATATATATTGGCCTTCTAGGA 57.837 34.615 25.11 0.00 42.33 2.94
3977 16461 5.997746 TCTATGTTTCTTGGTCCAACTTGAG 59.002 40.000 0.00 0.00 0.00 3.02
4030 16523 7.497595 ACCCTAAACTTTCTGAAACCAATTTC 58.502 34.615 0.00 0.00 43.96 2.17
4033 16526 9.249457 CCTAAACTTTCTGAAACCAATTTCTTC 57.751 33.333 0.00 0.00 44.02 2.87
4036 16529 8.707938 AACTTTCTGAAACCAATTTCTTCTTG 57.292 30.769 0.00 0.00 44.02 3.02
4040 16533 7.587037 TCTGAAACCAATTTCTTCTTGTCAT 57.413 32.000 1.82 0.00 44.02 3.06
4041 16534 8.690203 TCTGAAACCAATTTCTTCTTGTCATA 57.310 30.769 1.82 0.00 44.02 2.15
4042 16535 9.300681 TCTGAAACCAATTTCTTCTTGTCATAT 57.699 29.630 1.82 0.00 44.02 1.78
4043 16536 9.350357 CTGAAACCAATTTCTTCTTGTCATATG 57.650 33.333 0.00 0.00 44.02 1.78
4044 16537 9.076781 TGAAACCAATTTCTTCTTGTCATATGA 57.923 29.630 0.00 0.00 44.02 2.15
4045 16538 9.912634 GAAACCAATTTCTTCTTGTCATATGAA 57.087 29.630 7.07 0.00 41.01 2.57
4046 16539 9.918630 AAACCAATTTCTTCTTGTCATATGAAG 57.081 29.630 7.07 2.32 40.25 3.02
4047 16540 8.641498 ACCAATTTCTTCTTGTCATATGAAGT 57.359 30.769 7.07 0.00 39.98 3.01
4055 16548 9.383519 TCTTCTTGTCATATGAAGTTATGAACC 57.616 33.333 7.07 0.00 39.61 3.62
4062 16555 7.065324 GTCATATGAAGTTATGAACCCACGAAA 59.935 37.037 7.07 0.00 39.61 3.46
4077 16570 5.651576 ACCCACGAAACCAAAAAGTTACTTA 59.348 36.000 0.00 0.00 0.00 2.24
4080 16573 6.197655 CCACGAAACCAAAAAGTTACTTAAGC 59.802 38.462 1.29 0.00 0.00 3.09
4126 16621 2.230508 TGAGTAACTGTAGACCAAGCGG 59.769 50.000 0.00 0.00 38.77 5.52
4143 16640 5.974158 CCAAGCGGATAATACTATGATCTCG 59.026 44.000 0.00 0.00 0.00 4.04
4146 16643 5.648526 AGCGGATAATACTATGATCTCGTGT 59.351 40.000 0.00 0.00 0.00 4.49
4147 16644 5.739630 GCGGATAATACTATGATCTCGTGTG 59.260 44.000 0.00 0.00 0.00 3.82
4157 16654 6.807230 ACTATGATCTCGTGTGTAGACAAAAC 59.193 38.462 0.00 0.00 32.49 2.43
4263 16766 4.333926 GCTGGATCCTTCACACATAAGAAC 59.666 45.833 14.23 0.00 0.00 3.01
4410 16914 3.118542 GCTTGAGAAGGCAACAAACAAG 58.881 45.455 0.00 0.00 38.10 3.16
4512 17016 1.006220 CAAGAAACCAAAGGCGGCC 60.006 57.895 12.11 12.11 0.00 6.13
4527 17031 2.297701 GCGGCCATTCAAAAGGAGATA 58.702 47.619 2.24 0.00 0.00 1.98
4639 17143 3.696051 CCCCATGTTGGTCTATGAGTTTG 59.304 47.826 0.00 0.00 35.17 2.93
4995 17503 2.092429 TGTCCTGCTTCTGGAGTTGTTT 60.092 45.455 0.00 0.00 32.29 2.83
5057 17565 5.355596 TGAAGGCCTTGTTACACATTTTTG 58.644 37.500 26.25 0.00 0.00 2.44
5098 17606 5.394443 GGCAATTTGTCAGCAATTCTGGATA 60.394 40.000 0.00 0.00 43.06 2.59
5099 17607 6.101332 GCAATTTGTCAGCAATTCTGGATAA 58.899 36.000 0.00 0.00 43.06 1.75
5140 17648 3.328931 AGGCAGAGAAATGGAAGAAGTCA 59.671 43.478 0.00 0.00 0.00 3.41
5231 17739 1.550524 ACTCGAAGGCACTCAAGCATA 59.449 47.619 0.00 0.00 38.49 3.14
5239 17747 1.133976 GCACTCAAGCATACAGGGGAT 60.134 52.381 0.00 0.00 0.00 3.85
5263 17771 5.878406 TGAGGAGGGTGATCTAAGAAATC 57.122 43.478 0.00 0.00 0.00 2.17
5290 17798 1.139853 GGACTGCAGATGGAAGTAGGG 59.860 57.143 23.35 0.00 0.00 3.53
5310 17818 1.448985 GCGAAGTATTGTCCAGGCAA 58.551 50.000 0.00 0.00 0.00 4.52
5362 17870 3.294214 TCAAGGTATCCTCGGTAGTTCC 58.706 50.000 0.00 0.00 30.89 3.62
5396 17904 5.233902 CGAGCTCATCAGGAGATTAGTTTTG 59.766 44.000 15.40 0.00 43.70 2.44
5410 17918 8.782533 AGATTAGTTTTGAACATCACGTTTTC 57.217 30.769 0.00 0.00 38.19 2.29
5452 17969 5.055812 TCATTTCCTTGTGCATTTGGTTTC 58.944 37.500 0.00 0.00 0.00 2.78
5457 17974 3.181467 CCTTGTGCATTTGGTTTCCTTGA 60.181 43.478 0.00 0.00 0.00 3.02
5468 17985 2.566724 GGTTTCCTTGATTCCATGGCAA 59.433 45.455 6.96 4.92 37.48 4.52
5473 17990 1.753073 CTTGATTCCATGGCAACTCCC 59.247 52.381 6.96 0.00 37.61 4.30
5477 17994 3.011144 TGATTCCATGGCAACTCCCTTTA 59.989 43.478 6.96 0.00 37.61 1.85
5479 17996 3.017048 TCCATGGCAACTCCCTTTATG 57.983 47.619 6.96 0.00 37.61 1.90
5490 18007 4.273318 ACTCCCTTTATGCATCCTGTTTC 58.727 43.478 0.19 0.00 0.00 2.78
5496 18016 6.774656 CCCTTTATGCATCCTGTTTCTCTTAT 59.225 38.462 0.19 0.00 0.00 1.73
5550 18082 2.934886 AAGCTTGTTGTAACCGGGTA 57.065 45.000 6.32 0.00 0.00 3.69
5609 18148 6.696825 ATAATGTTATGATCTCGCTTCGTG 57.303 37.500 0.00 0.00 0.00 4.35
5641 18186 9.284594 CGATTGTTCTTTCTTTGTGTTTTTCTA 57.715 29.630 0.00 0.00 0.00 2.10
5651 18196 9.950680 TTCTTTGTGTTTTTCTAGAGCTAAATG 57.049 29.630 0.00 0.00 0.00 2.32
5716 18261 4.156477 GGGCTCTCTGTGGAGTAGATATT 58.844 47.826 0.00 0.00 40.29 1.28
5779 18324 2.826128 TGAAGAGGTAGACACGCAAGAT 59.174 45.455 0.00 0.00 43.62 2.40
5801 18346 5.066117 GATTCAAATCTCTTGCTGATGAGCA 59.934 40.000 1.46 1.46 41.62 4.26
5846 18391 7.658525 AGGCATAATATAGAGAGTCCTCATG 57.341 40.000 0.00 0.00 41.87 3.07
5983 18528 2.712057 ATTGCTTGCACAGTGCTAAC 57.288 45.000 25.83 14.64 45.31 2.34
6060 18605 5.302823 AGGGTGGTCTTGAGAATTCAAAAAG 59.697 40.000 8.44 8.13 42.48 2.27
6068 18613 5.200368 TGAGAATTCAAAAAGAGGTTGCC 57.800 39.130 8.44 0.00 0.00 4.52
6098 18643 8.497910 AGATAGATGTATCCCAACATGTACTT 57.502 34.615 0.00 0.00 40.17 2.24
6188 18735 3.504520 ACAAAGTTGTATTAAGTGGGCGG 59.495 43.478 0.00 0.00 40.16 6.13
6291 18838 1.001974 TGTATCTGGGCAGTGTGACAC 59.998 52.381 7.83 7.83 34.10 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.285486 CGTGATGCTCGCTCTGAATTTC 60.285 50.000 0.00 0.00 0.00 2.17
121 126 6.284459 AGAATACACAAGCTAGCTGGAATAC 58.716 40.000 26.31 10.97 0.00 1.89
152 157 9.357652 CCAACTTCACATCAATAAATTGGTAAG 57.642 33.333 3.00 0.32 38.30 2.34
386 3066 1.228657 GCCTCGTGGAGTGTGAAACC 61.229 60.000 7.92 0.00 32.18 3.27
405 3085 1.995484 CTATCGAACAGGCTGTGTGTG 59.005 52.381 22.83 11.31 40.26 3.82
406 3086 1.893137 TCTATCGAACAGGCTGTGTGT 59.107 47.619 22.83 5.27 40.26 3.72
485 5845 0.819666 GCCGGGATCAAATGTCCTCC 60.820 60.000 2.18 0.00 36.00 4.30
498 5859 3.089874 CATCTCCAAGGGCCGGGA 61.090 66.667 17.41 17.41 0.00 5.14
503 5864 1.755783 CAAGGGCATCTCCAAGGGC 60.756 63.158 0.00 0.00 36.21 5.19
544 5908 1.780503 GCCCAGCCATCAAGGTAAAT 58.219 50.000 0.00 0.00 40.61 1.40
600 5972 0.110192 GCTTATAAAGATGGCGCGCC 60.110 55.000 42.35 42.35 0.00 6.53
630 6006 0.249955 TCAACCATGCATCGCTCTCA 59.750 50.000 0.00 0.00 0.00 3.27
666 6046 1.209261 TGAGTGGTTGAGCTTGTGTGA 59.791 47.619 0.00 0.00 0.00 3.58
803 6184 1.337728 CCACAGGTGATGTCGCAGTTA 60.338 52.381 0.00 0.00 41.41 2.24
941 6322 2.550180 GACAACTCTTGGACTTTGGAGC 59.450 50.000 0.00 0.00 34.12 4.70
948 6329 6.681729 TTACTAATGGACAACTCTTGGACT 57.318 37.500 0.00 0.00 34.12 3.85
966 6350 7.038587 ACAGACACAAATGTAGACCCATTACTA 60.039 37.037 0.00 0.00 39.95 1.82
972 6356 4.431416 AACAGACACAAATGTAGACCCA 57.569 40.909 0.00 0.00 39.95 4.51
973 6357 5.302360 TGTAACAGACACAAATGTAGACCC 58.698 41.667 0.00 0.00 39.95 4.46
993 6377 2.104170 TCTATGTCGCCCATGTGTGTA 58.896 47.619 0.00 0.00 34.86 2.90
995 6379 1.935873 CTTCTATGTCGCCCATGTGTG 59.064 52.381 0.00 0.00 34.86 3.82
1012 6396 1.795768 TCACCATTGCTGTCGACTTC 58.204 50.000 17.92 8.80 0.00 3.01
1021 6405 0.541296 AGCTTGCCTTCACCATTGCT 60.541 50.000 0.00 0.00 0.00 3.91
1055 6439 0.893270 CGTGAAGGGCCCATTTGTCA 60.893 55.000 27.56 15.79 0.00 3.58
1059 6443 1.824852 GAAATCGTGAAGGGCCCATTT 59.175 47.619 27.56 19.54 0.00 2.32
1119 6503 0.238289 CATTGCCGTTCTTGAGCGTT 59.762 50.000 6.18 0.00 0.00 4.84
1149 6533 0.469494 TGCAGACAGAAGAACAGCCA 59.531 50.000 0.00 0.00 0.00 4.75
1150 6534 1.597742 TTGCAGACAGAAGAACAGCC 58.402 50.000 0.00 0.00 0.00 4.85
1186 6570 4.819761 TGTGGATCGCGCCTGAGC 62.820 66.667 0.00 0.00 0.00 4.26
1188 6572 3.356639 GAGTGTGGATCGCGCCTGA 62.357 63.158 0.00 0.00 0.00 3.86
1251 6635 5.427157 TGCTACCTCAGGGTTGAATACAATA 59.573 40.000 0.00 0.00 44.73 1.90
1280 6667 6.371548 GTCATAGGATGTGTTGTTAGAAAGCA 59.628 38.462 0.00 0.00 0.00 3.91
1287 6674 6.270156 TGTACGTCATAGGATGTGTTGTTA 57.730 37.500 12.38 0.00 43.07 2.41
1296 6683 5.292765 CATTTGAGCTGTACGTCATAGGAT 58.707 41.667 0.00 0.00 0.00 3.24
1308 6695 2.102925 CCAACCAAACCATTTGAGCTGT 59.897 45.455 0.00 0.00 43.26 4.40
1372 6759 2.288579 TGCTGAACCAATCGTAACTCGT 60.289 45.455 0.00 0.00 40.80 4.18
1393 6780 2.359531 GCTCGTGGAAGATAGCTGTACT 59.640 50.000 0.00 0.00 32.18 2.73
1401 6788 5.297527 TGTTCGTAATAGCTCGTGGAAGATA 59.702 40.000 0.00 0.00 0.00 1.98
1402 6789 4.097437 TGTTCGTAATAGCTCGTGGAAGAT 59.903 41.667 0.00 0.00 0.00 2.40
1436 6823 3.947868 ACTTGTATTGCATCTGCTGACT 58.052 40.909 3.53 0.00 42.66 3.41
1515 6910 1.875514 CAGTTGCTGTGCTTGCTCTTA 59.124 47.619 0.00 0.00 0.00 2.10
1639 7034 9.379770 CCCCAAATCAGGAAAATAAGGTAATAT 57.620 33.333 0.00 0.00 0.00 1.28
1640 7035 7.289084 GCCCCAAATCAGGAAAATAAGGTAATA 59.711 37.037 0.00 0.00 0.00 0.98
1641 7036 6.099701 GCCCCAAATCAGGAAAATAAGGTAAT 59.900 38.462 0.00 0.00 0.00 1.89
1642 7037 5.423931 GCCCCAAATCAGGAAAATAAGGTAA 59.576 40.000 0.00 0.00 0.00 2.85
1643 7038 4.959839 GCCCCAAATCAGGAAAATAAGGTA 59.040 41.667 0.00 0.00 0.00 3.08
1644 7039 3.774766 GCCCCAAATCAGGAAAATAAGGT 59.225 43.478 0.00 0.00 0.00 3.50
1645 7040 3.181476 CGCCCCAAATCAGGAAAATAAGG 60.181 47.826 0.00 0.00 0.00 2.69
1646 7041 3.699038 TCGCCCCAAATCAGGAAAATAAG 59.301 43.478 0.00 0.00 0.00 1.73
1647 7042 3.699038 CTCGCCCCAAATCAGGAAAATAA 59.301 43.478 0.00 0.00 0.00 1.40
1648 7043 3.287222 CTCGCCCCAAATCAGGAAAATA 58.713 45.455 0.00 0.00 0.00 1.40
1649 7044 2.102578 CTCGCCCCAAATCAGGAAAAT 58.897 47.619 0.00 0.00 0.00 1.82
1650 7045 1.203001 ACTCGCCCCAAATCAGGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
1651 7046 0.404040 ACTCGCCCCAAATCAGGAAA 59.596 50.000 0.00 0.00 0.00 3.13
1652 7047 1.281419 TACTCGCCCCAAATCAGGAA 58.719 50.000 0.00 0.00 0.00 3.36
1653 7048 1.281419 TTACTCGCCCCAAATCAGGA 58.719 50.000 0.00 0.00 0.00 3.86
1654 7049 2.348411 ATTACTCGCCCCAAATCAGG 57.652 50.000 0.00 0.00 0.00 3.86
1655 7050 6.391227 AATTTATTACTCGCCCCAAATCAG 57.609 37.500 0.00 0.00 0.00 2.90
1656 7051 6.783708 AAATTTATTACTCGCCCCAAATCA 57.216 33.333 0.00 0.00 0.00 2.57
1657 7052 6.478673 CCAAAATTTATTACTCGCCCCAAATC 59.521 38.462 0.00 0.00 0.00 2.17
1658 7053 6.345298 CCAAAATTTATTACTCGCCCCAAAT 58.655 36.000 0.00 0.00 0.00 2.32
1659 7054 5.337652 CCCAAAATTTATTACTCGCCCCAAA 60.338 40.000 0.00 0.00 0.00 3.28
1660 7055 4.160626 CCCAAAATTTATTACTCGCCCCAA 59.839 41.667 0.00 0.00 0.00 4.12
1661 7056 3.702045 CCCAAAATTTATTACTCGCCCCA 59.298 43.478 0.00 0.00 0.00 4.96
1662 7057 3.955551 TCCCAAAATTTATTACTCGCCCC 59.044 43.478 0.00 0.00 0.00 5.80
1663 7058 4.643334 ACTCCCAAAATTTATTACTCGCCC 59.357 41.667 0.00 0.00 0.00 6.13
1706 7139 2.290008 ACATAGCCGAACCAACACATGA 60.290 45.455 0.00 0.00 0.00 3.07
1736 7181 1.280133 CCTCCCTCTTTGCACTCATCA 59.720 52.381 0.00 0.00 0.00 3.07
1748 7196 2.379972 CACTTCGTGTATCCTCCCTCT 58.620 52.381 0.00 0.00 0.00 3.69
1751 7199 0.824759 AGCACTTCGTGTATCCTCCC 59.175 55.000 0.00 0.00 35.75 4.30
1753 7201 2.541178 CCGTAGCACTTCGTGTATCCTC 60.541 54.545 0.00 0.00 35.75 3.71
1757 7208 1.814394 TCACCGTAGCACTTCGTGTAT 59.186 47.619 0.00 0.00 35.75 2.29
1761 7212 1.000506 ACAATCACCGTAGCACTTCGT 59.999 47.619 0.00 0.00 0.00 3.85
1763 7214 4.430007 TGATACAATCACCGTAGCACTTC 58.570 43.478 0.00 0.00 30.73 3.01
1772 7229 6.563422 ACCATTCAAATTGATACAATCACCG 58.437 36.000 0.00 0.00 39.39 4.94
1791 7248 3.318839 CACCGGCAATGATATGAACCATT 59.681 43.478 0.00 0.00 33.66 3.16
1796 7253 2.172505 AGGACACCGGCAATGATATGAA 59.827 45.455 0.00 0.00 0.00 2.57
1822 7279 1.296002 GGTAGGGTCTCCATGGGTTT 58.704 55.000 13.02 0.00 34.83 3.27
1832 7289 0.981277 CACCGGGAATGGTAGGGTCT 60.981 60.000 6.32 0.00 41.38 3.85
1903 7376 8.272176 GTCATTTGCTTTCATCTCGATAGTAAG 58.728 37.037 0.00 0.00 31.17 2.34
1920 7393 6.263842 TCTTTCTTGTTCATCAGTCATTTGCT 59.736 34.615 0.00 0.00 0.00 3.91
1929 7402 7.430992 TCATCTGTTCTTTCTTGTTCATCAG 57.569 36.000 0.00 0.00 0.00 2.90
1930 7403 7.991084 ATCATCTGTTCTTTCTTGTTCATCA 57.009 32.000 0.00 0.00 0.00 3.07
1952 7530 8.974060 TTTGTACTTATTGAGGATTGGGTATC 57.026 34.615 0.00 0.00 0.00 2.24
1987 7566 3.981212 TCTGTGATCCAGACATCCAGTA 58.019 45.455 9.14 0.00 45.34 2.74
1997 7576 7.966753 CACTTAATTGAATGTTCTGTGATCCAG 59.033 37.037 5.18 5.18 42.97 3.86
1998 7577 7.448161 ACACTTAATTGAATGTTCTGTGATCCA 59.552 33.333 0.00 0.00 0.00 3.41
1999 7578 7.752239 CACACTTAATTGAATGTTCTGTGATCC 59.248 37.037 0.00 0.00 30.26 3.36
2000 7579 8.292448 ACACACTTAATTGAATGTTCTGTGATC 58.708 33.333 12.84 0.00 32.60 2.92
2001 7580 8.169977 ACACACTTAATTGAATGTTCTGTGAT 57.830 30.769 12.84 0.51 32.60 3.06
2002 7581 7.566760 ACACACTTAATTGAATGTTCTGTGA 57.433 32.000 12.84 0.00 32.60 3.58
2003 7582 7.112009 CGAACACACTTAATTGAATGTTCTGTG 59.888 37.037 18.65 7.21 42.30 3.66
2004 7583 7.011950 TCGAACACACTTAATTGAATGTTCTGT 59.988 33.333 18.65 3.69 42.30 3.41
2005 7584 7.351981 TCGAACACACTTAATTGAATGTTCTG 58.648 34.615 18.65 14.50 42.30 3.02
2006 7585 7.490962 TCGAACACACTTAATTGAATGTTCT 57.509 32.000 18.65 0.00 42.30 3.01
2007 7586 8.015087 TGATCGAACACACTTAATTGAATGTTC 58.985 33.333 14.37 14.37 41.49 3.18
2008 7587 7.870826 TGATCGAACACACTTAATTGAATGTT 58.129 30.769 0.00 1.16 33.15 2.71
2028 7607 5.066117 TCAGTAGTAGGCTAGTTGTTGATCG 59.934 44.000 7.27 0.00 0.00 3.69
2034 7619 4.017808 CCACTCAGTAGTAGGCTAGTTGT 58.982 47.826 7.27 0.00 33.48 3.32
2044 7641 8.874744 AATAACTAACTGTCCACTCAGTAGTA 57.125 34.615 0.00 0.00 46.25 1.82
2055 7652 5.699097 TGCCACAAAATAACTAACTGTCC 57.301 39.130 0.00 0.00 0.00 4.02
2071 7668 7.471721 CATTTATTCTTTAAGACGATGCCACA 58.528 34.615 0.00 0.00 0.00 4.17
2075 7672 6.634436 CCTGCATTTATTCTTTAAGACGATGC 59.366 38.462 16.83 16.83 0.00 3.91
2086 7683 7.593644 GTCGTTTTTACACCTGCATTTATTCTT 59.406 33.333 0.00 0.00 0.00 2.52
2101 7698 8.581057 TTACGTAGGTTAATGTCGTTTTTACA 57.419 30.769 0.00 0.00 36.24 2.41
2134 7731 6.910536 TGTGACTTTTTGTTTGTTTGTGTT 57.089 29.167 0.00 0.00 0.00 3.32
2171 7915 1.390463 CTTGCTAACTTCGAAGTCCGC 59.610 52.381 29.82 29.84 38.57 5.54
2176 7920 4.810790 TCTTCCTCTTGCTAACTTCGAAG 58.189 43.478 23.43 23.43 0.00 3.79
2180 7924 5.063880 TGGTTTCTTCCTCTTGCTAACTTC 58.936 41.667 0.00 0.00 0.00 3.01
2181 7925 5.048846 TGGTTTCTTCCTCTTGCTAACTT 57.951 39.130 0.00 0.00 0.00 2.66
2249 8869 7.486802 AAAGGATTTGCAAAATTTGAGTGAG 57.513 32.000 17.19 0.00 36.60 3.51
2298 8940 5.288687 TGATCTCCTGGAGGGAAATCTAAA 58.711 41.667 23.00 0.34 41.10 1.85
2299 8941 4.895836 TGATCTCCTGGAGGGAAATCTAA 58.104 43.478 23.00 1.09 41.10 2.10
2300 8942 4.559576 TGATCTCCTGGAGGGAAATCTA 57.440 45.455 23.00 1.85 41.10 1.98
2301 8943 3.428063 TGATCTCCTGGAGGGAAATCT 57.572 47.619 23.00 0.54 41.10 2.40
2302 8944 4.510167 TTTGATCTCCTGGAGGGAAATC 57.490 45.455 23.00 17.59 44.58 2.17
2303 8945 4.293368 ACTTTTGATCTCCTGGAGGGAAAT 59.707 41.667 23.00 9.47 44.58 2.17
2304 8946 3.657727 ACTTTTGATCTCCTGGAGGGAAA 59.342 43.478 23.00 15.41 44.58 3.13
2396 9496 1.197721 GGTGGTGAGCTGTTGAAATCG 59.802 52.381 0.00 0.00 0.00 3.34
2430 9533 1.305930 GGCAAAGGACTTACGGCCAG 61.306 60.000 2.24 0.00 41.02 4.85
2433 9536 1.923227 GCTGGCAAAGGACTTACGGC 61.923 60.000 0.00 0.00 0.00 5.68
2522 10272 8.618702 TTTAAAACTTGTACGTGGGATTATCA 57.381 30.769 0.00 0.00 0.00 2.15
2528 10278 7.798596 TGTAATTTAAAACTTGTACGTGGGA 57.201 32.000 0.00 0.00 0.00 4.37
2537 10287 7.988028 TGGGGTTCCTTTGTAATTTAAAACTTG 59.012 33.333 0.00 0.00 0.00 3.16
2540 10290 7.502696 AGTGGGGTTCCTTTGTAATTTAAAAC 58.497 34.615 0.00 0.00 0.00 2.43
2545 10295 5.162914 ACCTAGTGGGGTTCCTTTGTAATTT 60.163 40.000 0.00 0.00 40.03 1.82
2560 11754 0.036732 TTTGCTGCAGACCTAGTGGG 59.963 55.000 20.43 0.00 41.89 4.61
2602 11839 9.416284 TCTCCTGTAGTTTATTTGTTTTCCTTT 57.584 29.630 0.00 0.00 0.00 3.11
2603 11840 8.847196 GTCTCCTGTAGTTTATTTGTTTTCCTT 58.153 33.333 0.00 0.00 0.00 3.36
2605 11842 8.074370 GTGTCTCCTGTAGTTTATTTGTTTTCC 58.926 37.037 0.00 0.00 0.00 3.13
2606 11843 8.617809 TGTGTCTCCTGTAGTTTATTTGTTTTC 58.382 33.333 0.00 0.00 0.00 2.29
2607 11844 8.514330 TGTGTCTCCTGTAGTTTATTTGTTTT 57.486 30.769 0.00 0.00 0.00 2.43
2610 11847 5.701290 GCTGTGTCTCCTGTAGTTTATTTGT 59.299 40.000 0.00 0.00 0.00 2.83
2613 11850 5.482908 CTGCTGTGTCTCCTGTAGTTTATT 58.517 41.667 0.00 0.00 0.00 1.40
2614 11851 4.621747 GCTGCTGTGTCTCCTGTAGTTTAT 60.622 45.833 0.00 0.00 0.00 1.40
2615 11852 3.306088 GCTGCTGTGTCTCCTGTAGTTTA 60.306 47.826 0.00 0.00 0.00 2.01
2616 11853 2.548920 GCTGCTGTGTCTCCTGTAGTTT 60.549 50.000 0.00 0.00 0.00 2.66
2618 11855 0.605589 GCTGCTGTGTCTCCTGTAGT 59.394 55.000 0.00 0.00 0.00 2.73
2619 11856 0.605083 TGCTGCTGTGTCTCCTGTAG 59.395 55.000 0.00 0.00 0.00 2.74
2620 11857 0.605083 CTGCTGCTGTGTCTCCTGTA 59.395 55.000 0.00 0.00 0.00 2.74
2621 11858 1.370437 CTGCTGCTGTGTCTCCTGT 59.630 57.895 0.00 0.00 0.00 4.00
2622 11859 0.605083 TACTGCTGCTGTGTCTCCTG 59.395 55.000 20.53 0.00 0.00 3.86
2623 11860 1.342074 TTACTGCTGCTGTGTCTCCT 58.658 50.000 20.53 0.00 0.00 3.69
2625 11862 3.131223 TCCTATTACTGCTGCTGTGTCTC 59.869 47.826 20.53 0.00 0.00 3.36
2626 11863 3.099905 TCCTATTACTGCTGCTGTGTCT 58.900 45.455 20.53 8.56 0.00 3.41
2628 11865 3.099905 TCTCCTATTACTGCTGCTGTGT 58.900 45.455 20.53 12.12 0.00 3.72
2655 11892 0.324368 ATCGCCAGAGTGGTAGACCA 60.324 55.000 0.00 0.00 45.30 4.02
2657 11894 3.819337 TGTATATCGCCAGAGTGGTAGAC 59.181 47.826 0.00 0.00 40.46 2.59
2706 12503 1.218047 GTCGGACAGCACATGCCTA 59.782 57.895 2.62 0.00 43.38 3.93
2709 12506 2.432456 TCGTCGGACAGCACATGC 60.432 61.111 9.10 0.00 42.49 4.06
2710 12507 0.667487 AACTCGTCGGACAGCACATG 60.667 55.000 9.10 0.00 0.00 3.21
2712 12509 0.240145 CTAACTCGTCGGACAGCACA 59.760 55.000 9.10 0.00 0.00 4.57
2713 12510 1.071567 GCTAACTCGTCGGACAGCAC 61.072 60.000 9.10 0.00 0.00 4.40
2714 12511 1.211969 GCTAACTCGTCGGACAGCA 59.788 57.895 9.10 0.00 0.00 4.41
2715 12512 1.516603 GGCTAACTCGTCGGACAGC 60.517 63.158 9.10 8.73 0.00 4.40
2716 12513 1.139095 GGGCTAACTCGTCGGACAG 59.861 63.158 9.10 7.39 0.00 3.51
2719 12516 0.899720 ATTTGGGCTAACTCGTCGGA 59.100 50.000 0.00 0.00 0.00 4.55
2720 12517 1.734163 AATTTGGGCTAACTCGTCGG 58.266 50.000 0.00 0.00 0.00 4.79
2721 12518 4.569162 TGATTAATTTGGGCTAACTCGTCG 59.431 41.667 0.00 0.00 0.00 5.12
2724 13141 6.436843 AACTGATTAATTTGGGCTAACTCG 57.563 37.500 0.00 0.00 0.00 4.18
2754 14415 5.065988 GCAACGTCATTAAGTACCCATTGAT 59.934 40.000 0.00 0.00 0.00 2.57
2765 14426 6.706055 TGAGAAAGTAGCAACGTCATTAAG 57.294 37.500 0.00 0.00 0.00 1.85
2767 14428 7.667043 ATTTGAGAAAGTAGCAACGTCATTA 57.333 32.000 0.00 0.00 0.00 1.90
2769 14430 6.313905 CCTATTTGAGAAAGTAGCAACGTCAT 59.686 38.462 0.00 0.00 0.00 3.06
2770 14431 5.637810 CCTATTTGAGAAAGTAGCAACGTCA 59.362 40.000 0.00 0.00 0.00 4.35
2773 14434 7.331193 AGTTACCTATTTGAGAAAGTAGCAACG 59.669 37.037 0.00 0.00 0.00 4.10
2819 14484 1.663911 AGGGGTATGGCAAGTGTACA 58.336 50.000 0.00 0.00 0.00 2.90
2823 14488 2.780595 CGAAGGGGTATGGCAAGTG 58.219 57.895 0.00 0.00 0.00 3.16
2878 14543 1.474143 GGCTTCTATCACAGGTGAGGC 60.474 57.143 8.24 2.77 43.61 4.70
2893 14558 1.856802 CTTTGCTGGTTGTTGGCTTC 58.143 50.000 0.00 0.00 0.00 3.86
2939 14625 3.632604 TCTTCGTGACATGATAGGAGTCC 59.367 47.826 0.00 0.00 0.00 3.85
2948 14634 2.690497 GAGGGAGATCTTCGTGACATGA 59.310 50.000 0.00 0.00 0.00 3.07
2958 14644 4.100189 CGTGTTATTCTGGAGGGAGATCTT 59.900 45.833 0.00 0.00 0.00 2.40
3004 14690 0.886563 GCTGGGAATAGGCATGATGC 59.113 55.000 9.33 9.33 44.08 3.91
3029 14715 2.618709 GCCAAGCATATAAAGACCGCTT 59.381 45.455 0.00 0.00 43.41 4.68
3030 14716 2.222027 GCCAAGCATATAAAGACCGCT 58.778 47.619 0.00 0.00 33.45 5.52
3031 14717 1.946768 TGCCAAGCATATAAAGACCGC 59.053 47.619 0.00 0.00 31.71 5.68
3033 14719 6.884280 ATAGTTGCCAAGCATATAAAGACC 57.116 37.500 0.00 0.00 38.76 3.85
3036 14722 8.158169 TCTGAATAGTTGCCAAGCATATAAAG 57.842 34.615 0.00 0.00 38.76 1.85
3056 14748 2.415608 CGAGTAGGGCGCCTCTGAA 61.416 63.158 28.56 4.81 34.61 3.02
3093 14785 4.148128 AGTTGCAACCTGATAGGATGAG 57.852 45.455 25.62 0.00 40.25 2.90
3114 14806 1.227823 CGGTCAGTGTGGCCTGAAA 60.228 57.895 3.32 0.00 40.79 2.69
3122 14814 2.268920 CCATCCCCGGTCAGTGTG 59.731 66.667 0.00 0.00 0.00 3.82
3141 14836 2.359900 ACCGCTGATGAAATCCTCAAC 58.640 47.619 0.00 0.00 44.73 3.18
3173 14868 4.659172 CTGGCGTTGGAGGGGCAA 62.659 66.667 0.00 0.00 38.32 4.52
3187 14882 0.168348 CTCGACGTAGGTGTCACTGG 59.832 60.000 2.35 0.00 38.84 4.00
3213 14908 2.896685 AGTATCTGCCTCTATGCTCCAC 59.103 50.000 0.00 0.00 0.00 4.02
3270 14971 1.891919 GCAAGCCACTGGACGACAA 60.892 57.895 0.00 0.00 0.00 3.18
3275 14976 2.985847 GTGGGCAAGCCACTGGAC 60.986 66.667 13.87 0.00 37.98 4.02
3280 14981 2.133641 AACTTGGTGGGCAAGCCAC 61.134 57.895 13.87 8.99 37.98 5.01
3293 14994 8.422973 TGTTGAGATTTTGGAAATTCAACTTG 57.577 30.769 23.03 0.00 39.88 3.16
3302 15003 7.338196 TCACTGTACTTGTTGAGATTTTGGAAA 59.662 33.333 0.00 0.00 0.00 3.13
3321 15022 2.300723 ACGTTGCCTTATGGTCACTGTA 59.699 45.455 0.00 0.00 35.27 2.74
3332 15033 2.029815 TGCTGCGACGTTGCCTTA 59.970 55.556 24.73 8.01 0.00 2.69
3333 15034 3.649986 GTGCTGCGACGTTGCCTT 61.650 61.111 24.73 0.00 0.00 4.35
3338 15039 1.740296 GTATGGGTGCTGCGACGTT 60.740 57.895 0.00 0.00 0.00 3.99
3368 15069 2.284405 TCGAACCACCCCTCCTCC 60.284 66.667 0.00 0.00 0.00 4.30
3403 15104 7.441157 CGAATTCTTCCTGCACTACCATATTTA 59.559 37.037 3.52 0.00 0.00 1.40
3404 15105 6.260936 CGAATTCTTCCTGCACTACCATATTT 59.739 38.462 3.52 0.00 0.00 1.40
3405 15106 5.760253 CGAATTCTTCCTGCACTACCATATT 59.240 40.000 3.52 0.00 0.00 1.28
3427 15128 2.101249 ACCTGTACCTTGTTCGTTTCGA 59.899 45.455 0.00 0.00 0.00 3.71
3464 15165 2.593978 CCCTGCATGACCTCCCAG 59.406 66.667 0.00 0.00 0.00 4.45
3501 15202 3.512516 GCCTGGATGCGCCTTCAC 61.513 66.667 4.18 0.00 37.63 3.18
3530 15231 2.581354 CAGAGCTTGCGGGCTACT 59.419 61.111 3.21 1.24 43.20 2.57
3613 15314 4.659172 TGCTCCCGGGCTTGTTGG 62.659 66.667 18.49 0.36 0.00 3.77
3626 15327 2.187163 GCGAGGTAGGGGTTGCTC 59.813 66.667 0.00 0.00 0.00 4.26
3759 16125 2.093128 CCTGTAGATAAGGGTTTGCGGT 60.093 50.000 0.00 0.00 0.00 5.68
3766 16132 3.116096 TGCTCACCTGTAGATAAGGGT 57.884 47.619 0.00 0.00 39.30 4.34
3818 16210 7.153985 ACAAATACCAAGTGAAATTGTCATGG 58.846 34.615 0.00 0.00 40.80 3.66
3821 16213 8.253810 TGAAACAAATACCAAGTGAAATTGTCA 58.746 29.630 0.00 0.00 0.00 3.58
3944 16427 6.262273 GGACCAAGAAACATAGAACAAGTTCA 59.738 38.462 14.69 2.36 41.84 3.18
3952 16435 6.361433 TCAAGTTGGACCAAGAAACATAGAA 58.639 36.000 7.31 0.00 0.00 2.10
3954 16437 5.182001 CCTCAAGTTGGACCAAGAAACATAG 59.818 44.000 7.31 0.00 0.00 2.23
4010 16497 9.154847 CAAGAAGAAATTGGTTTCAGAAAGTTT 57.845 29.630 0.00 0.00 44.92 2.66
4030 16523 8.616076 GGGTTCATAACTTCATATGACAAGAAG 58.384 37.037 4.48 2.24 40.92 2.85
4033 16526 7.465916 CGTGGGTTCATAACTTCATATGACAAG 60.466 40.741 4.48 3.80 40.92 3.16
4034 16527 6.315144 CGTGGGTTCATAACTTCATATGACAA 59.685 38.462 4.48 0.00 40.92 3.18
4036 16529 6.046593 TCGTGGGTTCATAACTTCATATGAC 58.953 40.000 4.48 0.00 40.92 3.06
4040 16533 5.644636 GGTTTCGTGGGTTCATAACTTCATA 59.355 40.000 0.00 0.00 0.00 2.15
4041 16534 4.457949 GGTTTCGTGGGTTCATAACTTCAT 59.542 41.667 0.00 0.00 0.00 2.57
4042 16535 3.816523 GGTTTCGTGGGTTCATAACTTCA 59.183 43.478 0.00 0.00 0.00 3.02
4043 16536 3.816523 TGGTTTCGTGGGTTCATAACTTC 59.183 43.478 0.00 0.00 0.00 3.01
4044 16537 3.822940 TGGTTTCGTGGGTTCATAACTT 58.177 40.909 0.00 0.00 0.00 2.66
4045 16538 3.495434 TGGTTTCGTGGGTTCATAACT 57.505 42.857 0.00 0.00 0.00 2.24
4046 16539 4.571372 TTTGGTTTCGTGGGTTCATAAC 57.429 40.909 0.00 0.00 0.00 1.89
4047 16540 5.127356 ACTTTTTGGTTTCGTGGGTTCATAA 59.873 36.000 0.00 0.00 0.00 1.90
4055 16548 6.197655 GCTTAAGTAACTTTTTGGTTTCGTGG 59.802 38.462 4.02 0.00 0.00 4.94
4062 16555 6.688637 AGTTCGCTTAAGTAACTTTTTGGT 57.311 33.333 15.50 0.00 29.25 3.67
4126 16621 9.976255 GTCTACACACGAGATCATAGTATTATC 57.024 37.037 0.00 0.00 0.00 1.75
4186 16686 3.614390 GCAACTCCTATGCCGAGGTATAC 60.614 52.174 0.00 0.00 37.85 1.47
4263 16766 3.742882 TCTGTGCTCTTCGATGTTTGAAG 59.257 43.478 0.00 0.00 43.31 3.02
4447 16951 4.949121 AGGATCCCTTTGTAGACTGTACT 58.051 43.478 8.55 0.00 0.00 2.73
4527 17031 7.893124 AGCAACCTCATTAATGAATTCATCT 57.107 32.000 20.95 13.29 36.18 2.90
4825 17333 0.600255 CCGAAGTCTGCGACCTTTGT 60.600 55.000 0.30 0.00 32.18 2.83
5057 17565 5.897377 ATTGCCTTGTGTGAATAAGGTAC 57.103 39.130 0.00 0.00 44.21 3.34
5098 17606 3.054065 CCTCCCTCTTCCATAACTTGCTT 60.054 47.826 0.00 0.00 0.00 3.91
5099 17607 2.507471 CCTCCCTCTTCCATAACTTGCT 59.493 50.000 0.00 0.00 0.00 3.91
5140 17648 2.195567 ACATTGCTGCAAGTGCCGT 61.196 52.632 20.72 9.32 41.18 5.68
5231 17739 0.952659 ACCCTCCTCATATCCCCTGT 59.047 55.000 0.00 0.00 0.00 4.00
5239 17747 6.209589 CGATTTCTTAGATCACCCTCCTCATA 59.790 42.308 0.00 0.00 0.00 2.15
5290 17798 0.392461 TGCCTGGACAATACTTCGCC 60.392 55.000 0.00 0.00 0.00 5.54
5310 17818 9.084533 GAAGTGAACTCCTCTTCCATACTATAT 57.915 37.037 0.00 0.00 38.69 0.86
5396 17904 6.401581 GGAGAATCTCTGAAAACGTGATGTTC 60.402 42.308 10.38 0.00 35.64 3.18
5410 17918 6.452494 AATGAATGCAAAGGAGAATCTCTG 57.548 37.500 10.38 2.02 33.73 3.35
5452 17969 1.753073 GGAGTTGCCATGGAATCAAGG 59.247 52.381 18.40 0.00 36.34 3.61
5457 17974 2.629017 AAAGGGAGTTGCCATGGAAT 57.371 45.000 18.40 0.00 38.95 3.01
5468 17985 4.018050 AGAAACAGGATGCATAAAGGGAGT 60.018 41.667 0.00 0.00 42.53 3.85
5533 18064 2.174363 AGTACCCGGTTACAACAAGC 57.826 50.000 12.12 0.00 0.00 4.01
5609 18148 4.091424 CAAAGAAAGAACAATCGATCGGC 58.909 43.478 16.41 0.00 0.00 5.54
5755 18300 0.889306 GCGTGTCTACCTCTTCACCT 59.111 55.000 0.00 0.00 0.00 4.00
5779 18324 4.959596 GCTCATCAGCAAGAGATTTGAA 57.040 40.909 0.00 0.00 46.06 2.69
5801 18346 5.688766 GCCTTAATAGGACTGGAAGCTTGAT 60.689 44.000 2.10 0.00 45.05 2.57
5846 18391 4.631813 ACTTACACGAGGAATTCTCATTGC 59.368 41.667 5.23 0.00 42.55 3.56
5860 18405 7.279313 GCCTAGATTTCCAAAATACTTACACGA 59.721 37.037 0.00 0.00 0.00 4.35
5983 18528 6.091849 TCCTTATTATCTCTATCGACGAACGG 59.908 42.308 0.00 0.00 42.82 4.44
6060 18605 5.799827 ACATCTATCTTCTAGGCAACCTC 57.200 43.478 0.00 0.00 34.61 3.85
6068 18613 8.811017 ACATGTTGGGATACATCTATCTTCTAG 58.189 37.037 0.00 0.00 36.64 2.43
6098 18643 9.915629 GTAGTAAGAAAGAGTTTTCATGAGAGA 57.084 33.333 0.00 0.00 44.14 3.10
6323 18871 8.557864 CAAGATCTCTGTAAGCAATCCATTAAG 58.442 37.037 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.