Multiple sequence alignment - TraesCS3B01G596100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G596100 chr3B 100.000 3014 0 0 1 3014 819036360 819039373 0.000000e+00 5566.0
1 TraesCS3B01G596100 chr3B 90.461 1237 97 13 1560 2782 818333153 818331924 0.000000e+00 1611.0
2 TraesCS3B01G596100 chr3B 95.238 672 25 2 1319 1984 818307823 818308493 0.000000e+00 1057.0
3 TraesCS3B01G596100 chr3B 92.203 513 31 7 2252 2757 818308504 818309014 0.000000e+00 717.0
4 TraesCS3B01G596100 chr3B 95.392 217 7 1 2801 3014 680218379 680218595 2.880000e-90 342.0
5 TraesCS3B01G596100 chr3B 83.951 162 24 2 2553 2713 818137682 818137842 1.450000e-33 154.0
6 TraesCS3B01G596100 chr3B 76.136 264 49 6 1912 2164 818136732 818136992 3.150000e-25 126.0
7 TraesCS3B01G596100 chr3B 78.571 112 24 0 1017 1128 818206372 818206261 1.160000e-09 75.0
8 TraesCS3B01G596100 chr3B 78.571 112 24 0 1017 1128 818241909 818241798 1.160000e-09 75.0
9 TraesCS3B01G596100 chr3B 100.000 29 0 0 1544 1572 818330884 818330856 2.000000e-03 54.7
10 TraesCS3B01G596100 chr3A 90.973 1983 131 29 841 2799 741359287 741357329 0.000000e+00 2627.0
11 TraesCS3B01G596100 chr3A 75.189 1189 205 49 1599 2713 740808135 740809307 2.100000e-131 479.0
12 TraesCS3B01G596100 chr3A 85.978 271 30 3 5 268 741361758 741361489 1.770000e-72 283.0
13 TraesCS3B01G596100 chr3A 90.789 76 3 2 744 818 741359355 741359283 6.880000e-17 99.0
14 TraesCS3B01G596100 chr3A 78.302 106 14 5 1215 1320 740872091 740871995 3.240000e-05 60.2
15 TraesCS3B01G596100 chr7B 96.262 214 8 0 2801 3014 27806530 27806317 4.780000e-93 351.0
16 TraesCS3B01G596100 chr7B 95.814 215 9 0 2800 3014 27808815 27808601 6.180000e-92 348.0
17 TraesCS3B01G596100 chr7B 95.775 213 9 0 2802 3014 706239078 706239290 8.000000e-91 344.0
18 TraesCS3B01G596100 chr7B 94.931 217 8 1 2801 3014 49616518 49616734 1.340000e-88 337.0
19 TraesCS3B01G596100 chr1B 97.561 205 5 0 2808 3012 106807814 106807610 4.780000e-93 351.0
20 TraesCS3B01G596100 chr5B 97.101 207 6 0 2808 3014 594144423 594144217 1.720000e-92 350.0
21 TraesCS3B01G596100 chr6B 96.190 210 5 1 2808 3014 704582204 704581995 1.030000e-89 340.0
22 TraesCS3B01G596100 chr4B 94.931 217 8 1 2801 3014 327220699 327220483 1.340000e-88 337.0
23 TraesCS3B01G596100 chr4B 91.753 97 8 0 150 246 606828668 606828764 5.240000e-28 135.0
24 TraesCS3B01G596100 chr4D 94.845 97 5 0 150 246 59066463 59066367 5.200000e-33 152.0
25 TraesCS3B01G596100 chr5D 93.000 100 7 0 149 248 482889168 482889069 2.420000e-31 147.0
26 TraesCS3B01G596100 chr7D 91.753 97 8 0 150 246 6082101 6082197 5.240000e-28 135.0
27 TraesCS3B01G596100 chr7D 88.785 107 12 0 150 256 83082493 83082387 6.780000e-27 132.0
28 TraesCS3B01G596100 chr2A 91.489 94 8 0 153 246 717877910 717877817 2.440000e-26 130.0
29 TraesCS3B01G596100 chr1A 90.722 97 9 0 150 246 6670361 6670265 2.440000e-26 130.0
30 TraesCS3B01G596100 chr1D 89.320 103 9 2 148 249 92092589 92092488 8.770000e-26 128.0
31 TraesCS3B01G596100 chr6D 86.325 117 12 4 135 249 392856429 392856543 1.130000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G596100 chr3B 819036360 819039373 3013 False 5566.00 5566 100.000000 1 3014 1 chr3B.!!$F2 3013
1 TraesCS3B01G596100 chr3B 818307823 818309014 1191 False 887.00 1057 93.720500 1319 2757 2 chr3B.!!$F4 1438
2 TraesCS3B01G596100 chr3B 818330856 818333153 2297 True 832.85 1611 95.230500 1544 2782 2 chr3B.!!$R3 1238
3 TraesCS3B01G596100 chr3A 741357329 741361758 4429 True 1003.00 2627 89.246667 5 2799 3 chr3A.!!$R2 2794
4 TraesCS3B01G596100 chr3A 740808135 740809307 1172 False 479.00 479 75.189000 1599 2713 1 chr3A.!!$F1 1114
5 TraesCS3B01G596100 chr7B 27806317 27808815 2498 True 349.50 351 96.038000 2800 3014 2 chr7B.!!$R1 214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.035056 CCCAGATCCACAACCCTCAC 60.035 60.0 0.00 0.0 0.0 3.51 F
280 287 0.036388 TGAGTGAAGGGCGCTAAAGG 60.036 55.0 7.64 0.0 37.5 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 3285 0.179020 TGCACACCCAGTTTCCTCTG 60.179 55.0 0.0 0.0 35.45 3.35 R
2095 4128 0.920763 TCTTGCCATCCCATCCTGGT 60.921 55.0 0.0 0.0 35.17 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.621280 TGAGATGGCCCAGATCCACA 60.621 55.000 0.00 0.00 36.26 4.17
37 38 0.035056 CCCAGATCCACAACCCTCAC 60.035 60.000 0.00 0.00 0.00 3.51
51 52 2.037367 TCACCCCCTCTCGGTCTG 59.963 66.667 0.00 0.00 0.00 3.51
52 53 2.283966 CACCCCCTCTCGGTCTGT 60.284 66.667 0.00 0.00 0.00 3.41
98 99 4.559153 AGCTTTTCCATACATGTGTTTGC 58.441 39.130 9.11 2.36 0.00 3.68
128 135 0.805614 GAGCACTCAGTACTCGCTCA 59.194 55.000 20.31 0.00 46.55 4.26
129 136 1.403679 GAGCACTCAGTACTCGCTCAT 59.596 52.381 20.31 0.00 46.55 2.90
157 164 1.817209 CCTTCGGTGCTACTCCCTC 59.183 63.158 0.00 0.00 0.00 4.30
159 166 0.970937 CTTCGGTGCTACTCCCTCCA 60.971 60.000 0.00 0.00 0.00 3.86
162 169 0.541863 CGGTGCTACTCCCTCCATTT 59.458 55.000 0.00 0.00 0.00 2.32
175 182 7.589993 ACTCCCTCCATTTCAAAATAGATGAT 58.410 34.615 0.00 0.00 0.00 2.45
176 183 7.723172 ACTCCCTCCATTTCAAAATAGATGATC 59.277 37.037 0.00 0.00 0.00 2.92
180 187 8.867097 CCTCCATTTCAAAATAGATGATCCAAT 58.133 33.333 0.00 0.00 0.00 3.16
240 247 7.843490 TGAGTTATCTATTTTGAAACGGAGG 57.157 36.000 0.00 0.00 0.00 4.30
241 248 6.821665 TGAGTTATCTATTTTGAAACGGAGGG 59.178 38.462 0.00 0.00 0.00 4.30
251 258 2.030371 GAAACGGAGGGAGTAGTAGGG 58.970 57.143 0.00 0.00 0.00 3.53
268 275 5.084519 AGTAGGGAACATGTAGTGAGTGAA 58.915 41.667 0.00 0.00 0.00 3.18
269 276 4.543590 AGGGAACATGTAGTGAGTGAAG 57.456 45.455 0.00 0.00 0.00 3.02
270 277 3.261897 AGGGAACATGTAGTGAGTGAAGG 59.738 47.826 0.00 0.00 0.00 3.46
271 278 3.600388 GGAACATGTAGTGAGTGAAGGG 58.400 50.000 0.00 0.00 0.00 3.95
272 279 2.770164 ACATGTAGTGAGTGAAGGGC 57.230 50.000 0.00 0.00 0.00 5.19
273 280 1.066858 ACATGTAGTGAGTGAAGGGCG 60.067 52.381 0.00 0.00 0.00 6.13
274 281 0.108138 ATGTAGTGAGTGAAGGGCGC 60.108 55.000 0.00 0.00 0.00 6.53
275 282 1.185618 TGTAGTGAGTGAAGGGCGCT 61.186 55.000 7.64 0.00 40.83 5.92
276 283 0.815734 GTAGTGAGTGAAGGGCGCTA 59.184 55.000 7.64 0.00 37.50 4.26
277 284 1.203994 GTAGTGAGTGAAGGGCGCTAA 59.796 52.381 7.64 0.00 37.50 3.09
278 285 0.685097 AGTGAGTGAAGGGCGCTAAA 59.315 50.000 7.64 0.00 37.50 1.85
279 286 1.079503 GTGAGTGAAGGGCGCTAAAG 58.920 55.000 7.64 0.00 37.50 1.85
280 287 0.036388 TGAGTGAAGGGCGCTAAAGG 60.036 55.000 7.64 0.00 37.50 3.11
281 288 1.369839 GAGTGAAGGGCGCTAAAGGC 61.370 60.000 7.64 0.00 37.50 4.35
282 289 1.377333 GTGAAGGGCGCTAAAGGCT 60.377 57.895 7.64 0.00 39.13 4.58
283 290 1.377202 TGAAGGGCGCTAAAGGCTG 60.377 57.895 7.64 0.00 39.13 4.85
284 291 2.044946 AAGGGCGCTAAAGGCTGG 60.045 61.111 7.64 0.00 39.13 4.85
285 292 4.803908 AGGGCGCTAAAGGCTGGC 62.804 66.667 7.64 0.00 39.13 4.85
298 305 2.190313 CTGGCCGGCTGCATCTTA 59.810 61.111 28.56 1.89 43.89 2.10
299 306 1.228063 CTGGCCGGCTGCATCTTAT 60.228 57.895 28.56 0.00 43.89 1.73
300 307 0.820891 CTGGCCGGCTGCATCTTATT 60.821 55.000 28.56 0.00 43.89 1.40
301 308 0.819259 TGGCCGGCTGCATCTTATTC 60.819 55.000 28.56 5.04 43.89 1.75
302 309 1.518903 GGCCGGCTGCATCTTATTCC 61.519 60.000 28.56 0.00 43.89 3.01
303 310 0.536006 GCCGGCTGCATCTTATTCCT 60.536 55.000 22.15 0.00 40.77 3.36
304 311 1.270839 GCCGGCTGCATCTTATTCCTA 60.271 52.381 22.15 0.00 40.77 2.94
305 312 2.693069 CCGGCTGCATCTTATTCCTAG 58.307 52.381 0.50 0.00 0.00 3.02
306 313 2.613977 CCGGCTGCATCTTATTCCTAGG 60.614 54.545 0.82 0.82 0.00 3.02
307 314 2.613977 CGGCTGCATCTTATTCCTAGGG 60.614 54.545 9.46 0.00 0.00 3.53
308 315 2.373502 GGCTGCATCTTATTCCTAGGGT 59.626 50.000 9.46 0.48 0.00 4.34
309 316 3.406764 GCTGCATCTTATTCCTAGGGTG 58.593 50.000 9.46 0.00 0.00 4.61
310 317 3.808618 GCTGCATCTTATTCCTAGGGTGG 60.809 52.174 9.46 0.00 0.00 4.61
311 318 3.392616 CTGCATCTTATTCCTAGGGTGGT 59.607 47.826 9.46 0.00 0.00 4.16
312 319 3.391296 TGCATCTTATTCCTAGGGTGGTC 59.609 47.826 9.46 0.00 0.00 4.02
313 320 3.244596 GCATCTTATTCCTAGGGTGGTCC 60.245 52.174 9.46 0.00 0.00 4.46
314 321 3.788116 TCTTATTCCTAGGGTGGTCCA 57.212 47.619 9.46 0.00 38.24 4.02
315 322 4.083080 TCTTATTCCTAGGGTGGTCCAA 57.917 45.455 9.46 0.00 38.24 3.53
316 323 4.641868 TCTTATTCCTAGGGTGGTCCAAT 58.358 43.478 9.46 1.83 38.24 3.16
317 324 5.795079 TCTTATTCCTAGGGTGGTCCAATA 58.205 41.667 9.46 0.81 38.24 1.90
318 325 5.844516 TCTTATTCCTAGGGTGGTCCAATAG 59.155 44.000 9.46 0.00 38.24 1.73
319 326 1.802553 TCCTAGGGTGGTCCAATAGC 58.197 55.000 9.46 0.00 38.24 2.97
320 327 1.294068 TCCTAGGGTGGTCCAATAGCT 59.706 52.381 9.46 0.00 38.24 3.32
321 328 2.127708 CCTAGGGTGGTCCAATAGCTT 58.872 52.381 0.00 0.00 38.24 3.74
322 329 2.509964 CCTAGGGTGGTCCAATAGCTTT 59.490 50.000 0.00 0.00 38.24 3.51
323 330 2.514458 AGGGTGGTCCAATAGCTTTG 57.486 50.000 0.00 0.00 38.24 2.77
324 331 1.710809 AGGGTGGTCCAATAGCTTTGT 59.289 47.619 0.00 0.00 38.24 2.83
325 332 2.092323 GGGTGGTCCAATAGCTTTGTC 58.908 52.381 0.00 0.00 35.00 3.18
326 333 1.737793 GGTGGTCCAATAGCTTTGTCG 59.262 52.381 0.00 0.00 0.00 4.35
327 334 2.423577 GTGGTCCAATAGCTTTGTCGT 58.576 47.619 0.00 0.00 0.00 4.34
328 335 2.159627 GTGGTCCAATAGCTTTGTCGTG 59.840 50.000 0.00 0.00 0.00 4.35
329 336 1.737793 GGTCCAATAGCTTTGTCGTGG 59.262 52.381 0.00 0.00 0.00 4.94
330 337 2.614481 GGTCCAATAGCTTTGTCGTGGA 60.614 50.000 0.00 0.00 32.80 4.02
331 338 2.415512 GTCCAATAGCTTTGTCGTGGAC 59.584 50.000 9.19 9.19 45.85 4.02
332 339 1.393539 CCAATAGCTTTGTCGTGGACG 59.606 52.381 0.00 0.00 41.45 4.79
333 340 1.393539 CAATAGCTTTGTCGTGGACGG 59.606 52.381 0.00 0.00 40.29 4.79
334 341 0.739813 ATAGCTTTGTCGTGGACGGC 60.740 55.000 0.00 0.00 45.40 5.68
335 342 1.812686 TAGCTTTGTCGTGGACGGCT 61.813 55.000 5.27 5.37 45.41 5.52
336 343 2.668280 GCTTTGTCGTGGACGGCTC 61.668 63.158 5.27 0.00 45.41 4.70
337 344 2.355363 TTTGTCGTGGACGGCTCG 60.355 61.111 5.27 0.00 45.41 5.03
358 365 4.473520 CTAGGCAGCGGTGGTGGG 62.474 72.222 17.54 0.00 0.00 4.61
360 367 3.908904 TAGGCAGCGGTGGTGGGTA 62.909 63.158 17.54 0.00 0.00 3.69
362 369 4.323477 GCAGCGGTGGTGGGTACA 62.323 66.667 17.54 0.00 0.00 2.90
363 370 2.358247 CAGCGGTGGTGGGTACAC 60.358 66.667 6.74 0.00 46.97 2.90
373 380 2.904697 GTGGGTACACCTACTATGGC 57.095 55.000 7.59 0.00 43.32 4.40
374 381 1.068127 GTGGGTACACCTACTATGGCG 59.932 57.143 7.59 0.00 43.32 5.69
375 382 1.063792 TGGGTACACCTACTATGGCGA 60.064 52.381 0.00 0.00 41.11 5.54
376 383 1.339291 GGGTACACCTACTATGGCGAC 59.661 57.143 0.00 0.00 35.85 5.19
377 384 3.272963 GGGTACACCTACTATGGCGACA 61.273 54.545 0.00 0.00 40.21 4.35
378 385 5.105029 GGGTACACCTACTATGGCGACAG 62.105 56.522 0.00 0.00 39.48 3.51
387 394 3.870955 TGGCGACAGGAGAAGTGT 58.129 55.556 0.00 0.00 35.01 3.55
388 395 2.133195 TGGCGACAGGAGAAGTGTT 58.867 52.632 0.00 0.00 35.01 3.32
389 396 0.468226 TGGCGACAGGAGAAGTGTTT 59.532 50.000 0.00 0.00 35.01 2.83
390 397 1.149148 GGCGACAGGAGAAGTGTTTC 58.851 55.000 0.00 0.00 0.00 2.78
391 398 1.149148 GCGACAGGAGAAGTGTTTCC 58.851 55.000 0.00 0.00 33.64 3.13
392 399 1.540363 GCGACAGGAGAAGTGTTTCCA 60.540 52.381 0.00 0.00 35.88 3.53
393 400 2.408050 CGACAGGAGAAGTGTTTCCAG 58.592 52.381 0.00 0.00 35.88 3.86
394 401 2.035961 CGACAGGAGAAGTGTTTCCAGA 59.964 50.000 0.00 0.00 35.88 3.86
395 402 3.306364 CGACAGGAGAAGTGTTTCCAGAT 60.306 47.826 0.00 0.00 35.88 2.90
396 403 4.646572 GACAGGAGAAGTGTTTCCAGATT 58.353 43.478 0.00 0.00 35.88 2.40
397 404 5.566826 CGACAGGAGAAGTGTTTCCAGATTA 60.567 44.000 0.00 0.00 35.88 1.75
398 405 6.187727 ACAGGAGAAGTGTTTCCAGATTAA 57.812 37.500 0.00 0.00 35.88 1.40
399 406 6.601332 ACAGGAGAAGTGTTTCCAGATTAAA 58.399 36.000 0.00 0.00 35.88 1.52
400 407 6.712547 ACAGGAGAAGTGTTTCCAGATTAAAG 59.287 38.462 0.00 0.00 35.88 1.85
401 408 6.150140 CAGGAGAAGTGTTTCCAGATTAAAGG 59.850 42.308 0.00 0.00 35.88 3.11
402 409 6.004574 GGAGAAGTGTTTCCAGATTAAAGGT 58.995 40.000 0.00 0.00 33.64 3.50
403 410 6.072452 GGAGAAGTGTTTCCAGATTAAAGGTG 60.072 42.308 0.00 0.00 33.64 4.00
404 411 6.365520 AGAAGTGTTTCCAGATTAAAGGTGT 58.634 36.000 0.00 0.00 33.64 4.16
405 412 6.263168 AGAAGTGTTTCCAGATTAAAGGTGTG 59.737 38.462 0.00 0.00 33.64 3.82
406 413 4.827284 AGTGTTTCCAGATTAAAGGTGTGG 59.173 41.667 0.00 0.00 0.00 4.17
407 414 4.583073 GTGTTTCCAGATTAAAGGTGTGGT 59.417 41.667 0.00 0.00 32.23 4.16
408 415 4.582656 TGTTTCCAGATTAAAGGTGTGGTG 59.417 41.667 0.00 0.00 32.23 4.17
409 416 4.447138 TTCCAGATTAAAGGTGTGGTGT 57.553 40.909 0.00 0.00 32.23 4.16
410 417 5.570205 TTCCAGATTAAAGGTGTGGTGTA 57.430 39.130 0.00 0.00 32.23 2.90
411 418 5.772393 TCCAGATTAAAGGTGTGGTGTAT 57.228 39.130 0.00 0.00 32.23 2.29
412 419 6.134535 TCCAGATTAAAGGTGTGGTGTATT 57.865 37.500 0.00 0.00 32.23 1.89
413 420 6.177610 TCCAGATTAAAGGTGTGGTGTATTC 58.822 40.000 0.00 0.00 32.23 1.75
414 421 5.943416 CCAGATTAAAGGTGTGGTGTATTCA 59.057 40.000 0.00 0.00 0.00 2.57
415 422 6.094048 CCAGATTAAAGGTGTGGTGTATTCAG 59.906 42.308 0.00 0.00 0.00 3.02
416 423 5.648092 AGATTAAAGGTGTGGTGTATTCAGC 59.352 40.000 0.00 0.00 41.77 4.26
417 424 3.508845 AAAGGTGTGGTGTATTCAGCT 57.491 42.857 3.15 0.00 41.91 4.24
418 425 4.634012 AAAGGTGTGGTGTATTCAGCTA 57.366 40.909 3.15 0.00 41.91 3.32
419 426 3.611766 AGGTGTGGTGTATTCAGCTAC 57.388 47.619 3.15 2.80 41.91 3.58
420 427 2.903784 AGGTGTGGTGTATTCAGCTACA 59.096 45.455 3.15 3.56 41.91 2.74
421 428 3.326588 AGGTGTGGTGTATTCAGCTACAA 59.673 43.478 3.15 0.00 41.91 2.41
422 429 3.435671 GGTGTGGTGTATTCAGCTACAAC 59.564 47.826 3.15 5.11 41.91 3.32
423 430 3.435671 GTGTGGTGTATTCAGCTACAACC 59.564 47.826 0.03 0.78 38.33 3.77
424 431 3.326588 TGTGGTGTATTCAGCTACAACCT 59.673 43.478 0.03 0.00 38.33 3.50
425 432 3.933332 GTGGTGTATTCAGCTACAACCTC 59.067 47.826 0.03 0.00 38.33 3.85
426 433 3.580895 TGGTGTATTCAGCTACAACCTCA 59.419 43.478 0.03 0.00 38.33 3.86
427 434 4.225042 TGGTGTATTCAGCTACAACCTCAT 59.775 41.667 0.03 0.00 38.33 2.90
428 435 5.186198 GGTGTATTCAGCTACAACCTCATT 58.814 41.667 0.00 0.00 38.80 2.57
429 436 5.065218 GGTGTATTCAGCTACAACCTCATTG 59.935 44.000 0.00 0.00 40.17 2.82
430 437 5.874810 GTGTATTCAGCTACAACCTCATTGA 59.125 40.000 0.00 0.00 41.23 2.57
431 438 5.874810 TGTATTCAGCTACAACCTCATTGAC 59.125 40.000 0.00 0.00 41.23 3.18
432 439 4.350368 TTCAGCTACAACCTCATTGACA 57.650 40.909 0.00 0.00 41.23 3.58
433 440 4.350368 TCAGCTACAACCTCATTGACAA 57.650 40.909 0.00 0.00 41.23 3.18
434 441 4.065088 TCAGCTACAACCTCATTGACAAC 58.935 43.478 0.00 0.00 41.23 3.32
435 442 3.067106 AGCTACAACCTCATTGACAACG 58.933 45.455 0.00 0.00 41.23 4.10
436 443 3.064207 GCTACAACCTCATTGACAACGA 58.936 45.455 0.00 0.00 41.23 3.85
437 444 3.123621 GCTACAACCTCATTGACAACGAG 59.876 47.826 4.27 4.27 41.23 4.18
440 447 2.471255 CCTCATTGACAACGAGGCC 58.529 57.895 16.78 0.00 39.95 5.19
441 448 0.321564 CCTCATTGACAACGAGGCCA 60.322 55.000 16.78 0.00 39.95 5.36
442 449 1.522668 CTCATTGACAACGAGGCCAA 58.477 50.000 5.01 0.00 0.00 4.52
443 450 1.466167 CTCATTGACAACGAGGCCAAG 59.534 52.381 5.01 0.00 0.00 3.61
444 451 1.202758 TCATTGACAACGAGGCCAAGT 60.203 47.619 5.01 0.12 0.00 3.16
445 452 1.608590 CATTGACAACGAGGCCAAGTT 59.391 47.619 5.01 7.91 0.00 2.66
446 453 1.757682 TTGACAACGAGGCCAAGTTT 58.242 45.000 5.01 1.90 0.00 2.66
447 454 2.623878 TGACAACGAGGCCAAGTTTA 57.376 45.000 5.01 0.00 0.00 2.01
448 455 3.134574 TGACAACGAGGCCAAGTTTAT 57.865 42.857 5.01 0.92 0.00 1.40
449 456 4.274602 TGACAACGAGGCCAAGTTTATA 57.725 40.909 5.01 0.00 0.00 0.98
450 457 4.839121 TGACAACGAGGCCAAGTTTATAT 58.161 39.130 5.01 0.00 0.00 0.86
451 458 4.634004 TGACAACGAGGCCAAGTTTATATG 59.366 41.667 5.01 1.56 0.00 1.78
452 459 3.377172 ACAACGAGGCCAAGTTTATATGC 59.623 43.478 5.01 0.00 0.00 3.14
453 460 3.275617 ACGAGGCCAAGTTTATATGCA 57.724 42.857 5.01 0.00 0.00 3.96
454 461 3.616219 ACGAGGCCAAGTTTATATGCAA 58.384 40.909 5.01 0.00 0.00 4.08
455 462 4.013728 ACGAGGCCAAGTTTATATGCAAA 58.986 39.130 5.01 0.00 0.00 3.68
456 463 4.461081 ACGAGGCCAAGTTTATATGCAAAA 59.539 37.500 5.01 0.00 0.00 2.44
457 464 5.036737 CGAGGCCAAGTTTATATGCAAAAG 58.963 41.667 5.01 0.00 0.00 2.27
458 465 4.758688 AGGCCAAGTTTATATGCAAAAGC 58.241 39.130 5.01 0.00 0.00 3.51
459 466 4.222588 AGGCCAAGTTTATATGCAAAAGCA 59.777 37.500 5.01 0.00 0.00 3.91
460 467 4.567959 GGCCAAGTTTATATGCAAAAGCAG 59.432 41.667 0.00 0.00 0.00 4.24
461 468 5.410067 GCCAAGTTTATATGCAAAAGCAGA 58.590 37.500 0.00 0.00 0.00 4.26
462 469 5.517770 GCCAAGTTTATATGCAAAAGCAGAG 59.482 40.000 0.00 0.00 0.00 3.35
463 470 5.517770 CCAAGTTTATATGCAAAAGCAGAGC 59.482 40.000 0.00 0.00 0.00 4.09
464 471 5.902613 AGTTTATATGCAAAAGCAGAGCA 57.097 34.783 0.00 0.00 43.14 4.26
465 472 5.644644 AGTTTATATGCAAAAGCAGAGCAC 58.355 37.500 0.00 0.00 41.60 4.40
466 473 4.637483 TTATATGCAAAAGCAGAGCACC 57.363 40.909 0.00 0.00 41.60 5.01
467 474 2.205022 TATGCAAAAGCAGAGCACCT 57.795 45.000 0.00 0.00 41.60 4.00
468 475 0.601558 ATGCAAAAGCAGAGCACCTG 59.398 50.000 0.00 2.18 45.67 4.00
469 476 0.752743 TGCAAAAGCAGAGCACCTGT 60.753 50.000 7.76 0.00 44.71 4.00
470 477 0.318445 GCAAAAGCAGAGCACCTGTG 60.318 55.000 7.76 0.00 44.71 3.66
471 478 0.313043 CAAAAGCAGAGCACCTGTGG 59.687 55.000 7.76 0.00 44.71 4.17
472 479 0.183492 AAAAGCAGAGCACCTGTGGA 59.817 50.000 7.76 0.00 44.71 4.02
473 480 0.403271 AAAGCAGAGCACCTGTGGAT 59.597 50.000 7.76 0.00 44.71 3.41
474 481 0.403271 AAGCAGAGCACCTGTGGATT 59.597 50.000 7.76 0.00 44.71 3.01
475 482 1.279496 AGCAGAGCACCTGTGGATTA 58.721 50.000 7.76 0.00 44.71 1.75
476 483 1.842562 AGCAGAGCACCTGTGGATTAT 59.157 47.619 7.76 0.00 44.71 1.28
477 484 2.240667 AGCAGAGCACCTGTGGATTATT 59.759 45.455 7.76 0.00 44.71 1.40
478 485 3.455910 AGCAGAGCACCTGTGGATTATTA 59.544 43.478 7.76 0.00 44.71 0.98
479 486 4.103785 AGCAGAGCACCTGTGGATTATTAT 59.896 41.667 7.76 0.00 44.71 1.28
480 487 5.307976 AGCAGAGCACCTGTGGATTATTATA 59.692 40.000 7.76 0.00 44.71 0.98
481 488 6.013032 AGCAGAGCACCTGTGGATTATTATAT 60.013 38.462 7.76 0.00 44.71 0.86
482 489 7.180946 AGCAGAGCACCTGTGGATTATTATATA 59.819 37.037 7.76 0.00 44.71 0.86
483 490 7.278868 GCAGAGCACCTGTGGATTATTATATAC 59.721 40.741 7.76 0.00 44.71 1.47
484 491 8.314021 CAGAGCACCTGTGGATTATTATATACA 58.686 37.037 0.00 0.00 38.10 2.29
485 492 8.880244 AGAGCACCTGTGGATTATTATATACAA 58.120 33.333 0.00 0.00 0.00 2.41
486 493 9.672673 GAGCACCTGTGGATTATTATATACAAT 57.327 33.333 0.00 0.00 0.00 2.71
521 528 2.729692 ACGGAGTTCTTCGAGTGGT 58.270 52.632 7.54 0.00 37.78 4.16
522 529 1.038280 ACGGAGTTCTTCGAGTGGTT 58.962 50.000 7.54 0.00 37.78 3.67
523 530 1.411612 ACGGAGTTCTTCGAGTGGTTT 59.588 47.619 7.54 0.00 37.78 3.27
524 531 2.059541 CGGAGTTCTTCGAGTGGTTTC 58.940 52.381 0.00 0.00 0.00 2.78
525 532 2.414806 GGAGTTCTTCGAGTGGTTTCC 58.585 52.381 0.00 0.00 0.00 3.13
526 533 2.224209 GGAGTTCTTCGAGTGGTTTCCA 60.224 50.000 0.00 0.00 0.00 3.53
586 593 2.359354 TCCACCATCGCCGTTTGG 60.359 61.111 7.18 7.18 39.02 3.28
610 617 5.734855 TCGCAAAGTTTTATATGCTCCTC 57.265 39.130 0.00 0.00 36.67 3.71
616 623 7.254932 GCAAAGTTTTATATGCTCCTCCTACAG 60.255 40.741 0.00 0.00 35.93 2.74
627 634 4.382147 GCTCCTCCTACAGTTTTCTCGATT 60.382 45.833 0.00 0.00 0.00 3.34
628 635 5.326200 TCCTCCTACAGTTTTCTCGATTC 57.674 43.478 0.00 0.00 0.00 2.52
629 636 4.770531 TCCTCCTACAGTTTTCTCGATTCA 59.229 41.667 0.00 0.00 0.00 2.57
645 2645 8.327941 TCTCGATTCATTTCTTGAGACATTTT 57.672 30.769 0.00 0.00 35.27 1.82
684 2684 9.825972 GAATATATGTGGAATAATGAACCAACG 57.174 33.333 0.00 0.00 35.40 4.10
685 2685 4.981806 ATGTGGAATAATGAACCAACGG 57.018 40.909 0.00 0.00 35.40 4.44
686 2686 4.022413 TGTGGAATAATGAACCAACGGA 57.978 40.909 0.00 0.00 35.40 4.69
687 2687 4.399219 TGTGGAATAATGAACCAACGGAA 58.601 39.130 0.00 0.00 35.40 4.30
688 2688 4.457603 TGTGGAATAATGAACCAACGGAAG 59.542 41.667 0.00 0.00 35.40 3.46
689 2689 4.698304 GTGGAATAATGAACCAACGGAAGA 59.302 41.667 0.00 0.00 35.40 2.87
690 2690 4.941263 TGGAATAATGAACCAACGGAAGAG 59.059 41.667 0.00 0.00 0.00 2.85
691 2691 4.335594 GGAATAATGAACCAACGGAAGAGG 59.664 45.833 0.00 0.00 36.24 3.69
692 2692 2.200373 AATGAACCAACGGAAGAGGG 57.800 50.000 0.00 0.00 34.87 4.30
693 2693 1.358152 ATGAACCAACGGAAGAGGGA 58.642 50.000 0.00 0.00 34.87 4.20
694 2694 1.133363 TGAACCAACGGAAGAGGGAA 58.867 50.000 0.00 0.00 34.87 3.97
695 2695 1.202722 TGAACCAACGGAAGAGGGAAC 60.203 52.381 0.00 0.00 34.87 3.62
696 2696 0.841289 AACCAACGGAAGAGGGAACA 59.159 50.000 0.00 0.00 34.87 3.18
697 2697 0.841289 ACCAACGGAAGAGGGAACAA 59.159 50.000 0.00 0.00 34.87 2.83
698 2698 1.213430 ACCAACGGAAGAGGGAACAAA 59.787 47.619 0.00 0.00 34.87 2.83
699 2699 2.303175 CCAACGGAAGAGGGAACAAAA 58.697 47.619 0.00 0.00 0.00 2.44
700 2700 2.691011 CCAACGGAAGAGGGAACAAAAA 59.309 45.455 0.00 0.00 0.00 1.94
716 2716 2.979814 AAAAACCAAGTGGCCAACTC 57.020 45.000 7.24 0.00 38.56 3.01
717 2717 0.744281 AAAACCAAGTGGCCAACTCG 59.256 50.000 7.24 4.08 38.56 4.18
718 2718 1.106944 AAACCAAGTGGCCAACTCGG 61.107 55.000 7.24 9.01 39.11 4.63
719 2719 2.113139 CCAAGTGGCCAACTCGGT 59.887 61.111 7.24 0.00 38.56 4.69
720 2720 1.373435 CCAAGTGGCCAACTCGGTA 59.627 57.895 7.24 0.00 38.56 4.02
721 2721 0.250553 CCAAGTGGCCAACTCGGTAA 60.251 55.000 7.24 0.00 38.56 2.85
722 2722 1.156736 CAAGTGGCCAACTCGGTAAG 58.843 55.000 7.24 0.00 38.56 2.34
723 2723 0.605589 AAGTGGCCAACTCGGTAAGC 60.606 55.000 7.24 0.00 38.56 3.09
724 2724 1.003718 GTGGCCAACTCGGTAAGCT 60.004 57.895 7.24 0.00 36.97 3.74
725 2725 0.248289 GTGGCCAACTCGGTAAGCTA 59.752 55.000 7.24 0.00 36.97 3.32
726 2726 0.248289 TGGCCAACTCGGTAAGCTAC 59.752 55.000 0.61 0.00 36.97 3.58
727 2727 0.535797 GGCCAACTCGGTAAGCTACT 59.464 55.000 0.00 0.00 36.97 2.57
728 2728 1.753073 GGCCAACTCGGTAAGCTACTA 59.247 52.381 0.00 0.00 36.97 1.82
729 2729 2.167075 GGCCAACTCGGTAAGCTACTAA 59.833 50.000 0.00 0.00 36.97 2.24
730 2730 3.368739 GGCCAACTCGGTAAGCTACTAAA 60.369 47.826 0.00 0.00 36.97 1.85
731 2731 4.248058 GCCAACTCGGTAAGCTACTAAAA 58.752 43.478 0.00 0.00 36.97 1.52
732 2732 4.692155 GCCAACTCGGTAAGCTACTAAAAA 59.308 41.667 0.00 0.00 36.97 1.94
733 2733 5.163884 GCCAACTCGGTAAGCTACTAAAAAG 60.164 44.000 0.00 0.00 36.97 2.27
734 2734 6.161381 CCAACTCGGTAAGCTACTAAAAAGA 58.839 40.000 0.00 0.00 0.00 2.52
735 2735 6.647895 CCAACTCGGTAAGCTACTAAAAAGAA 59.352 38.462 0.00 0.00 0.00 2.52
736 2736 7.333672 CCAACTCGGTAAGCTACTAAAAAGAAT 59.666 37.037 0.00 0.00 0.00 2.40
737 2737 8.718734 CAACTCGGTAAGCTACTAAAAAGAATT 58.281 33.333 0.00 0.00 0.00 2.17
738 2738 8.252964 ACTCGGTAAGCTACTAAAAAGAATTG 57.747 34.615 0.00 0.00 0.00 2.32
739 2739 7.068692 TCGGTAAGCTACTAAAAAGAATTGC 57.931 36.000 0.00 0.00 0.00 3.56
740 2740 6.651643 TCGGTAAGCTACTAAAAAGAATTGCA 59.348 34.615 0.00 0.00 0.00 4.08
741 2741 7.173562 TCGGTAAGCTACTAAAAAGAATTGCAA 59.826 33.333 0.00 0.00 0.00 4.08
742 2742 7.968405 CGGTAAGCTACTAAAAAGAATTGCAAT 59.032 33.333 5.99 5.99 0.00 3.56
743 2743 9.290483 GGTAAGCTACTAAAAAGAATTGCAATC 57.710 33.333 13.38 6.58 0.00 2.67
744 2744 9.840427 GTAAGCTACTAAAAAGAATTGCAATCA 57.160 29.630 13.38 0.00 0.00 2.57
778 2778 7.916977 GGGAACAAAACTTGAAGTTAACGTAAT 59.083 33.333 11.43 0.00 37.47 1.89
779 2779 9.934190 GGAACAAAACTTGAAGTTAACGTAATA 57.066 29.630 11.43 0.00 37.47 0.98
806 2806 6.821665 GGACCAGCAATATTAGTTAGTTGACA 59.178 38.462 0.00 0.00 0.00 3.58
807 2807 7.499232 GGACCAGCAATATTAGTTAGTTGACAT 59.501 37.037 0.00 0.00 0.00 3.06
845 2845 3.595709 TTTGCGACTGGACGTAAAAAG 57.404 42.857 6.33 0.00 42.50 2.27
857 2857 8.789762 ACTGGACGTAAAAAGCAATATTAGTTT 58.210 29.630 0.00 0.00 0.00 2.66
864 2864 6.584185 AAAAGCAATATTAGTTTGTCCCGT 57.416 33.333 0.00 0.00 0.00 5.28
872 2872 0.393808 AGTTTGTCCCGTGCACAACT 60.394 50.000 18.64 14.33 33.42 3.16
873 2873 0.248458 GTTTGTCCCGTGCACAACTG 60.248 55.000 18.64 0.00 33.42 3.16
874 2874 0.678366 TTTGTCCCGTGCACAACTGT 60.678 50.000 18.64 0.00 33.42 3.55
877 2877 2.978010 CCCGTGCACAACTGTCCC 60.978 66.667 18.64 0.00 0.00 4.46
878 2878 2.111043 CCGTGCACAACTGTCCCT 59.889 61.111 18.64 0.00 0.00 4.20
879 2879 1.369692 CCGTGCACAACTGTCCCTA 59.630 57.895 18.64 0.00 0.00 3.53
881 2881 1.610624 CCGTGCACAACTGTCCCTATT 60.611 52.381 18.64 0.00 0.00 1.73
882 2882 2.151202 CGTGCACAACTGTCCCTATTT 58.849 47.619 18.64 0.00 0.00 1.40
883 2883 2.095768 CGTGCACAACTGTCCCTATTTG 60.096 50.000 18.64 0.00 0.00 2.32
884 2884 3.146066 GTGCACAACTGTCCCTATTTGA 58.854 45.455 13.17 0.00 0.00 2.69
885 2885 3.568007 GTGCACAACTGTCCCTATTTGAA 59.432 43.478 13.17 0.00 0.00 2.69
886 2886 3.568007 TGCACAACTGTCCCTATTTGAAC 59.432 43.478 0.00 0.00 0.00 3.18
887 2887 3.057526 GCACAACTGTCCCTATTTGAACC 60.058 47.826 0.00 0.00 0.00 3.62
890 2890 4.141251 ACAACTGTCCCTATTTGAACCTGT 60.141 41.667 0.00 0.00 0.00 4.00
891 2891 4.021102 ACTGTCCCTATTTGAACCTGTG 57.979 45.455 0.00 0.00 0.00 3.66
892 2892 3.244911 ACTGTCCCTATTTGAACCTGTGG 60.245 47.826 0.00 0.00 0.00 4.17
893 2893 2.714250 TGTCCCTATTTGAACCTGTGGT 59.286 45.455 0.00 0.00 37.65 4.16
896 2896 4.022329 GTCCCTATTTGAACCTGTGGTTTG 60.022 45.833 3.34 0.00 46.95 2.93
920 2920 2.046700 TGACCGGCCCGTCAAATC 60.047 61.111 22.49 0.00 39.78 2.17
924 2924 1.674322 CCGGCCCGTCAAATCACTT 60.674 57.895 0.85 0.00 0.00 3.16
935 2935 6.765989 CCCGTCAAATCACTTCTCCATATAAA 59.234 38.462 0.00 0.00 0.00 1.40
936 2936 7.041780 CCCGTCAAATCACTTCTCCATATAAAG 60.042 40.741 0.00 0.00 0.00 1.85
937 2937 7.495934 CCGTCAAATCACTTCTCCATATAAAGT 59.504 37.037 0.00 0.00 33.63 2.66
939 2939 9.167311 GTCAAATCACTTCTCCATATAAAGTGT 57.833 33.333 12.61 0.86 46.31 3.55
940 2940 9.383519 TCAAATCACTTCTCCATATAAAGTGTC 57.616 33.333 12.61 0.00 46.31 3.67
941 2941 9.388506 CAAATCACTTCTCCATATAAAGTGTCT 57.611 33.333 12.61 1.96 46.31 3.41
973 2973 5.810525 CGCAAGGAACGAAATATTTCATCT 58.189 37.500 24.23 13.71 37.01 2.90
984 2985 7.931948 ACGAAATATTTCATCTATTCCCGTCTT 59.068 33.333 24.23 0.00 37.01 3.01
989 2990 5.869649 TTCATCTATTCCCGTCTTGATCA 57.130 39.130 0.00 0.00 0.00 2.92
999 3000 1.080093 TCTTGATCACGCCGTCACC 60.080 57.895 0.00 0.00 0.00 4.02
1008 3009 4.077184 GCCGTCACCATGGACCGA 62.077 66.667 21.47 9.02 34.24 4.69
1009 3010 2.900273 CCGTCACCATGGACCGAT 59.100 61.111 21.47 0.00 34.24 4.18
1011 3012 1.515487 CGTCACCATGGACCGATCA 59.485 57.895 21.47 0.00 34.24 2.92
1012 3013 0.108377 CGTCACCATGGACCGATCAA 60.108 55.000 21.47 0.00 34.24 2.57
1053 3054 2.101575 GATGTGCTCCGCGACGTA 59.898 61.111 8.23 0.00 0.00 3.57
1085 3086 3.918220 CGATGCCGCAGACTTCGC 61.918 66.667 0.00 0.00 0.00 4.70
1093 3094 2.807045 CAGACTTCGCGCGCTTCT 60.807 61.111 30.48 22.04 0.00 2.85
1186 3187 2.120718 AGTTCCTCCCGTGGCTCT 59.879 61.111 0.00 0.00 0.00 4.09
1227 3228 0.907230 ACCAGACCCCTCTCAAGCTC 60.907 60.000 0.00 0.00 0.00 4.09
1258 3259 2.125673 CCAAGTCCACCTACCGCG 60.126 66.667 0.00 0.00 0.00 6.46
1303 3304 0.179020 CAGAGGAAACTGGGTGTGCA 60.179 55.000 0.00 0.00 44.43 4.57
1334 3335 2.642254 CCGCCGTCCAGTACCTCAA 61.642 63.158 0.00 0.00 0.00 3.02
1419 3420 2.890766 TTTCCAGTGGGACGAGGGC 61.891 63.158 9.92 0.00 44.89 5.19
1449 3450 2.478890 CGTCCTCTATGGCGACGGT 61.479 63.158 9.62 0.00 44.26 4.83
1471 3472 6.296026 GGTACCATCCTTTTATACAGCATCA 58.704 40.000 7.15 0.00 0.00 3.07
1478 3479 4.889409 CCTTTTATACAGCATCACCCACAT 59.111 41.667 0.00 0.00 0.00 3.21
1479 3480 5.360714 CCTTTTATACAGCATCACCCACATT 59.639 40.000 0.00 0.00 0.00 2.71
1491 3492 1.005450 ACCCACATTGATAAAGGGCGT 59.995 47.619 0.00 0.00 43.47 5.68
1908 3930 1.477685 GGTGGGTGAGGAAAGACGGA 61.478 60.000 0.00 0.00 0.00 4.69
1962 3984 1.024579 CACCCAATAGCTTCGCCGTT 61.025 55.000 0.00 0.00 0.00 4.44
2095 4128 2.203084 TTTGTCGAGCGGTTGCCA 60.203 55.556 0.00 0.00 44.31 4.92
2128 4161 1.740025 GGCAAGAAGTGTACATGGCTC 59.260 52.381 11.53 1.62 34.14 4.70
2249 4301 0.393537 GCCTAAGCATCACAGCTGGT 60.394 55.000 19.93 0.24 45.89 4.00
2354 4416 1.346062 AGCCGCTATCATGGTGAGAT 58.654 50.000 0.00 0.00 0.00 2.75
2395 4457 3.910490 TTGGTGCGCAACTTGCCC 61.910 61.111 28.12 16.32 41.12 5.36
2462 4525 1.873486 GCAAAGTGTCCCATGCCAAAC 60.873 52.381 0.00 0.00 32.73 2.93
2550 4632 2.093235 CCCACCAAGAAGAAGCTCTAGG 60.093 54.545 0.00 0.00 0.00 3.02
2670 4757 8.275015 TGAAGCCATATGAAAATTCTTCGTTA 57.725 30.769 3.65 0.00 33.25 3.18
2672 4759 9.226345 GAAGCCATATGAAAATTCTTCGTTAAG 57.774 33.333 3.65 0.00 0.00 1.85
2686 4773 7.022055 TCTTCGTTAAGAACTCAAATTTGCA 57.978 32.000 13.54 2.12 38.81 4.08
2689 4776 8.948853 TTCGTTAAGAACTCAAATTTGCATAG 57.051 30.769 13.54 8.41 33.14 2.23
2692 4779 8.230486 CGTTAAGAACTCAAATTTGCATAGACT 58.770 33.333 13.54 8.16 0.00 3.24
2696 4783 6.373774 AGAACTCAAATTTGCATAGACTCCTG 59.626 38.462 13.54 0.00 0.00 3.86
2705 4793 5.282055 TGCATAGACTCCTGGTAGATTTG 57.718 43.478 0.00 0.00 0.00 2.32
2729 4817 9.571810 TTGTCTCAAACATTGATTATGTATTGC 57.428 29.630 0.00 0.00 46.75 3.56
2894 7756 3.054582 AGGATGTGTCGTGTCCTAGTAGA 60.055 47.826 0.00 0.00 40.49 2.59
2925 7787 8.408656 TGTATCCTAGGCCTCTCTTATATAGT 57.591 38.462 9.68 0.00 0.00 2.12
2930 7792 3.108376 GGCCTCTCTTATATAGTGGGGG 58.892 54.545 0.00 0.00 38.27 5.40
2955 7817 2.235155 ACACACGATGTAACCTATGCCA 59.765 45.455 0.00 0.00 40.88 4.92
2957 7819 3.876914 CACACGATGTAACCTATGCCAAT 59.123 43.478 0.00 0.00 0.00 3.16
2970 7832 7.257790 ACCTATGCCAATATAATAGCACAGA 57.742 36.000 2.17 0.00 38.21 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.741221 GGGCCATCTCAGACAACGAC 60.741 60.000 4.39 0.00 0.00 4.34
3 4 0.742281 CTGGGCCATCTCAGACAACG 60.742 60.000 6.72 0.00 33.11 4.10
6 7 1.126488 GATCTGGGCCATCTCAGACA 58.874 55.000 6.72 0.00 42.00 3.41
8 9 0.030807 TGGATCTGGGCCATCTCAGA 60.031 55.000 6.72 11.28 43.15 3.27
9 10 0.108207 GTGGATCTGGGCCATCTCAG 59.892 60.000 6.72 2.09 37.81 3.35
11 12 0.548031 TTGTGGATCTGGGCCATCTC 59.452 55.000 6.72 6.82 37.81 2.75
29 30 2.284699 CGAGAGGGGGTGAGGGTT 60.285 66.667 0.00 0.00 0.00 4.11
51 52 9.202273 CTATAGCTCATCATTCTAGGTGAAAAC 57.798 37.037 0.00 0.00 38.29 2.43
52 53 7.875041 GCTATAGCTCATCATTCTAGGTGAAAA 59.125 37.037 17.75 0.00 36.80 2.29
98 99 0.171231 TGAGTGCTCGAATCAGGTCG 59.829 55.000 0.00 0.00 42.48 4.79
221 228 6.555463 ACTCCCTCCGTTTCAAAATAGATA 57.445 37.500 0.00 0.00 0.00 1.98
224 231 5.731591 ACTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
230 237 2.622452 CCCTACTACTCCCTCCGTTTCA 60.622 54.545 0.00 0.00 0.00 2.69
240 247 5.198965 TCACTACATGTTCCCTACTACTCC 58.801 45.833 2.30 0.00 0.00 3.85
241 248 5.887035 ACTCACTACATGTTCCCTACTACTC 59.113 44.000 2.30 0.00 0.00 2.59
251 258 3.003480 GCCCTTCACTCACTACATGTTC 58.997 50.000 2.30 0.00 0.00 3.18
273 280 4.803908 AGCCGGCCAGCCTTTAGC 62.804 66.667 26.15 4.57 44.25 3.09
274 281 2.825836 CAGCCGGCCAGCCTTTAG 60.826 66.667 26.15 0.00 0.00 1.85
281 288 0.820891 AATAAGATGCAGCCGGCCAG 60.821 55.000 26.15 18.21 43.89 4.85
282 289 0.819259 GAATAAGATGCAGCCGGCCA 60.819 55.000 26.15 16.30 43.89 5.36
283 290 1.518903 GGAATAAGATGCAGCCGGCC 61.519 60.000 26.15 9.73 43.89 6.13
284 291 0.536006 AGGAATAAGATGCAGCCGGC 60.536 55.000 21.89 21.89 45.13 6.13
285 292 2.613977 CCTAGGAATAAGATGCAGCCGG 60.614 54.545 1.05 0.00 0.00 6.13
286 293 2.613977 CCCTAGGAATAAGATGCAGCCG 60.614 54.545 11.48 0.00 0.00 5.52
287 294 2.373502 ACCCTAGGAATAAGATGCAGCC 59.626 50.000 11.48 0.00 0.00 4.85
288 295 3.406764 CACCCTAGGAATAAGATGCAGC 58.593 50.000 11.48 0.00 0.00 5.25
289 296 3.392616 ACCACCCTAGGAATAAGATGCAG 59.607 47.826 11.48 0.00 0.00 4.41
290 297 3.391296 GACCACCCTAGGAATAAGATGCA 59.609 47.826 11.48 0.00 0.00 3.96
291 298 3.244596 GGACCACCCTAGGAATAAGATGC 60.245 52.174 11.48 0.00 0.00 3.91
292 299 3.973973 TGGACCACCCTAGGAATAAGATG 59.026 47.826 11.48 0.00 35.38 2.90
293 300 4.295905 TGGACCACCCTAGGAATAAGAT 57.704 45.455 11.48 0.00 35.38 2.40
294 301 3.788116 TGGACCACCCTAGGAATAAGA 57.212 47.619 11.48 0.00 35.38 2.10
295 302 5.513267 GCTATTGGACCACCCTAGGAATAAG 60.513 48.000 11.48 0.00 35.38 1.73
296 303 4.349930 GCTATTGGACCACCCTAGGAATAA 59.650 45.833 11.48 0.00 35.38 1.40
297 304 3.908103 GCTATTGGACCACCCTAGGAATA 59.092 47.826 11.48 3.58 35.38 1.75
298 305 2.711547 GCTATTGGACCACCCTAGGAAT 59.288 50.000 11.48 2.45 35.38 3.01
299 306 2.124411 GCTATTGGACCACCCTAGGAA 58.876 52.381 11.48 0.00 35.38 3.36
300 307 1.294068 AGCTATTGGACCACCCTAGGA 59.706 52.381 11.48 0.00 35.38 2.94
301 308 1.807814 AGCTATTGGACCACCCTAGG 58.192 55.000 0.06 0.06 35.38 3.02
302 309 3.054361 ACAAAGCTATTGGACCACCCTAG 60.054 47.826 0.00 0.00 35.38 3.02
303 310 2.916934 ACAAAGCTATTGGACCACCCTA 59.083 45.455 0.00 0.00 35.38 3.53
304 311 1.710809 ACAAAGCTATTGGACCACCCT 59.289 47.619 0.00 0.00 35.38 4.34
305 312 2.092323 GACAAAGCTATTGGACCACCC 58.908 52.381 0.00 0.00 34.81 4.61
306 313 1.737793 CGACAAAGCTATTGGACCACC 59.262 52.381 0.00 0.00 0.00 4.61
307 314 2.159627 CACGACAAAGCTATTGGACCAC 59.840 50.000 0.00 0.00 0.00 4.16
308 315 2.422597 CACGACAAAGCTATTGGACCA 58.577 47.619 11.59 0.00 0.00 4.02
309 316 1.737793 CCACGACAAAGCTATTGGACC 59.262 52.381 11.59 0.00 0.00 4.46
310 317 2.415512 GTCCACGACAAAGCTATTGGAC 59.584 50.000 10.67 10.67 44.56 4.02
311 318 2.695359 GTCCACGACAAAGCTATTGGA 58.305 47.619 11.59 4.37 32.09 3.53
312 319 1.393539 CGTCCACGACAAAGCTATTGG 59.606 52.381 11.59 2.41 43.02 3.16
313 320 1.393539 CCGTCCACGACAAAGCTATTG 59.606 52.381 0.00 6.98 43.02 1.90
314 321 1.722011 CCGTCCACGACAAAGCTATT 58.278 50.000 0.00 0.00 43.02 1.73
315 322 0.739813 GCCGTCCACGACAAAGCTAT 60.740 55.000 0.00 0.00 43.02 2.97
316 323 1.373748 GCCGTCCACGACAAAGCTA 60.374 57.895 0.00 0.00 43.02 3.32
317 324 2.665185 GCCGTCCACGACAAAGCT 60.665 61.111 0.00 0.00 43.02 3.74
318 325 2.665185 AGCCGTCCACGACAAAGC 60.665 61.111 0.00 0.00 43.02 3.51
319 326 2.372690 CGAGCCGTCCACGACAAAG 61.373 63.158 0.00 0.00 43.02 2.77
320 327 2.355363 CGAGCCGTCCACGACAAA 60.355 61.111 0.00 0.00 43.02 2.83
341 348 4.473520 CCCACCACCGCTGCCTAG 62.474 72.222 0.00 0.00 0.00 3.02
342 349 3.908904 TACCCACCACCGCTGCCTA 62.909 63.158 0.00 0.00 0.00 3.93
345 352 4.323477 TGTACCCACCACCGCTGC 62.323 66.667 0.00 0.00 0.00 5.25
346 353 2.358247 GTGTACCCACCACCGCTG 60.358 66.667 0.00 0.00 35.44 5.18
354 361 1.068127 CGCCATAGTAGGTGTACCCAC 59.932 57.143 0.00 0.00 41.06 4.61
355 362 1.063792 TCGCCATAGTAGGTGTACCCA 60.064 52.381 0.00 0.00 40.11 4.51
356 363 1.339291 GTCGCCATAGTAGGTGTACCC 59.661 57.143 0.00 0.00 40.11 3.69
357 364 2.026641 TGTCGCCATAGTAGGTGTACC 58.973 52.381 0.00 0.00 40.11 3.34
358 365 2.034305 CCTGTCGCCATAGTAGGTGTAC 59.966 54.545 0.00 0.00 40.11 2.90
359 366 2.092267 TCCTGTCGCCATAGTAGGTGTA 60.092 50.000 0.00 0.00 40.11 2.90
360 367 1.112113 CCTGTCGCCATAGTAGGTGT 58.888 55.000 0.00 0.00 40.11 4.16
361 368 1.338337 CTCCTGTCGCCATAGTAGGTG 59.662 57.143 0.00 0.00 40.55 4.00
362 369 1.214673 TCTCCTGTCGCCATAGTAGGT 59.785 52.381 0.00 0.00 0.00 3.08
363 370 1.982660 TCTCCTGTCGCCATAGTAGG 58.017 55.000 0.00 0.00 0.00 3.18
364 371 2.952978 ACTTCTCCTGTCGCCATAGTAG 59.047 50.000 0.00 0.00 0.00 2.57
365 372 2.688446 CACTTCTCCTGTCGCCATAGTA 59.312 50.000 0.00 0.00 0.00 1.82
366 373 1.478510 CACTTCTCCTGTCGCCATAGT 59.521 52.381 0.00 0.00 0.00 2.12
367 374 1.478510 ACACTTCTCCTGTCGCCATAG 59.521 52.381 0.00 0.00 0.00 2.23
368 375 1.557099 ACACTTCTCCTGTCGCCATA 58.443 50.000 0.00 0.00 0.00 2.74
369 376 0.687354 AACACTTCTCCTGTCGCCAT 59.313 50.000 0.00 0.00 0.00 4.40
370 377 0.468226 AAACACTTCTCCTGTCGCCA 59.532 50.000 0.00 0.00 0.00 5.69
371 378 1.149148 GAAACACTTCTCCTGTCGCC 58.851 55.000 0.00 0.00 0.00 5.54
372 379 1.149148 GGAAACACTTCTCCTGTCGC 58.851 55.000 0.00 0.00 0.00 5.19
373 380 2.035961 TCTGGAAACACTTCTCCTGTCG 59.964 50.000 0.00 0.00 35.60 4.35
374 381 3.753294 TCTGGAAACACTTCTCCTGTC 57.247 47.619 0.00 0.00 35.60 3.51
375 382 4.713792 AATCTGGAAACACTTCTCCTGT 57.286 40.909 0.00 0.00 35.60 4.00
376 383 6.150140 CCTTTAATCTGGAAACACTTCTCCTG 59.850 42.308 0.00 0.00 35.60 3.86
377 384 6.183361 ACCTTTAATCTGGAAACACTTCTCCT 60.183 38.462 0.00 0.00 35.60 3.69
378 385 6.004574 ACCTTTAATCTGGAAACACTTCTCC 58.995 40.000 0.00 0.00 35.60 3.71
379 386 6.486993 ACACCTTTAATCTGGAAACACTTCTC 59.513 38.462 0.00 0.00 35.60 2.87
380 387 6.263168 CACACCTTTAATCTGGAAACACTTCT 59.737 38.462 0.00 0.00 35.60 2.85
381 388 6.438763 CACACCTTTAATCTGGAAACACTTC 58.561 40.000 0.00 0.00 35.60 3.01
382 389 5.301805 CCACACCTTTAATCTGGAAACACTT 59.698 40.000 0.00 0.00 35.60 3.16
383 390 4.827284 CCACACCTTTAATCTGGAAACACT 59.173 41.667 0.00 0.00 35.60 3.55
384 391 4.583073 ACCACACCTTTAATCTGGAAACAC 59.417 41.667 0.00 0.00 35.60 3.32
385 392 4.582656 CACCACACCTTTAATCTGGAAACA 59.417 41.667 0.00 0.00 39.59 2.83
386 393 4.583073 ACACCACACCTTTAATCTGGAAAC 59.417 41.667 0.00 0.00 0.00 2.78
387 394 4.798882 ACACCACACCTTTAATCTGGAAA 58.201 39.130 0.00 0.00 0.00 3.13
388 395 4.447138 ACACCACACCTTTAATCTGGAA 57.553 40.909 0.00 0.00 0.00 3.53
389 396 5.772393 ATACACCACACCTTTAATCTGGA 57.228 39.130 0.00 0.00 0.00 3.86
390 397 5.943416 TGAATACACCACACCTTTAATCTGG 59.057 40.000 0.00 0.00 0.00 3.86
391 398 6.403636 GCTGAATACACCACACCTTTAATCTG 60.404 42.308 0.00 0.00 0.00 2.90
392 399 5.648092 GCTGAATACACCACACCTTTAATCT 59.352 40.000 0.00 0.00 0.00 2.40
393 400 5.648092 AGCTGAATACACCACACCTTTAATC 59.352 40.000 0.00 0.00 0.00 1.75
394 401 5.570320 AGCTGAATACACCACACCTTTAAT 58.430 37.500 0.00 0.00 0.00 1.40
395 402 4.980573 AGCTGAATACACCACACCTTTAA 58.019 39.130 0.00 0.00 0.00 1.52
396 403 4.634012 AGCTGAATACACCACACCTTTA 57.366 40.909 0.00 0.00 0.00 1.85
397 404 3.508845 AGCTGAATACACCACACCTTT 57.491 42.857 0.00 0.00 0.00 3.11
398 405 3.326588 TGTAGCTGAATACACCACACCTT 59.673 43.478 0.00 0.00 30.76 3.50
399 406 2.903784 TGTAGCTGAATACACCACACCT 59.096 45.455 0.00 0.00 30.76 4.00
400 407 3.328382 TGTAGCTGAATACACCACACC 57.672 47.619 0.00 0.00 30.76 4.16
401 408 3.435671 GGTTGTAGCTGAATACACCACAC 59.564 47.826 0.00 0.00 35.44 3.82
402 409 3.326588 AGGTTGTAGCTGAATACACCACA 59.673 43.478 0.00 0.00 35.44 4.17
403 410 3.933332 GAGGTTGTAGCTGAATACACCAC 59.067 47.826 0.00 0.00 35.44 4.16
404 411 3.580895 TGAGGTTGTAGCTGAATACACCA 59.419 43.478 0.00 0.00 35.44 4.17
405 412 4.202245 TGAGGTTGTAGCTGAATACACC 57.798 45.455 0.00 0.00 35.44 4.16
406 413 5.874810 TCAATGAGGTTGTAGCTGAATACAC 59.125 40.000 0.00 0.00 38.95 2.90
407 414 5.874810 GTCAATGAGGTTGTAGCTGAATACA 59.125 40.000 0.00 0.00 38.95 2.29
408 415 5.874810 TGTCAATGAGGTTGTAGCTGAATAC 59.125 40.000 0.00 0.00 38.95 1.89
409 416 6.048732 TGTCAATGAGGTTGTAGCTGAATA 57.951 37.500 0.00 0.00 38.95 1.75
410 417 4.910195 TGTCAATGAGGTTGTAGCTGAAT 58.090 39.130 0.00 0.00 38.95 2.57
411 418 4.350368 TGTCAATGAGGTTGTAGCTGAA 57.650 40.909 0.00 0.00 38.95 3.02
412 419 4.065088 GTTGTCAATGAGGTTGTAGCTGA 58.935 43.478 0.00 0.00 38.95 4.26
413 420 3.120546 CGTTGTCAATGAGGTTGTAGCTG 60.121 47.826 0.00 0.00 38.95 4.24
414 421 3.067106 CGTTGTCAATGAGGTTGTAGCT 58.933 45.455 0.00 0.00 38.95 3.32
415 422 3.064207 TCGTTGTCAATGAGGTTGTAGC 58.936 45.455 3.23 0.00 38.95 3.58
416 423 4.910746 CTCGTTGTCAATGAGGTTGTAG 57.089 45.455 22.33 1.18 40.17 2.74
423 430 1.466167 CTTGGCCTCGTTGTCAATGAG 59.534 52.381 22.90 22.90 42.83 2.90
424 431 1.202758 ACTTGGCCTCGTTGTCAATGA 60.203 47.619 3.32 7.27 0.00 2.57
425 432 1.238439 ACTTGGCCTCGTTGTCAATG 58.762 50.000 3.32 0.00 0.00 2.82
426 433 1.981256 AACTTGGCCTCGTTGTCAAT 58.019 45.000 3.32 0.00 0.00 2.57
427 434 1.757682 AAACTTGGCCTCGTTGTCAA 58.242 45.000 3.32 0.00 0.00 3.18
428 435 2.623878 TAAACTTGGCCTCGTTGTCA 57.376 45.000 3.32 0.00 0.00 3.58
429 436 4.495844 GCATATAAACTTGGCCTCGTTGTC 60.496 45.833 3.32 0.00 0.00 3.18
430 437 3.377172 GCATATAAACTTGGCCTCGTTGT 59.623 43.478 3.32 3.11 0.00 3.32
431 438 3.376859 TGCATATAAACTTGGCCTCGTTG 59.623 43.478 3.32 0.00 0.00 4.10
432 439 3.616219 TGCATATAAACTTGGCCTCGTT 58.384 40.909 3.32 4.14 0.00 3.85
433 440 3.275617 TGCATATAAACTTGGCCTCGT 57.724 42.857 3.32 0.00 0.00 4.18
434 441 4.630894 TTTGCATATAAACTTGGCCTCG 57.369 40.909 3.32 0.00 0.00 4.63
435 442 4.805719 GCTTTTGCATATAAACTTGGCCTC 59.194 41.667 3.32 0.00 46.58 4.70
436 443 4.758688 GCTTTTGCATATAAACTTGGCCT 58.241 39.130 3.32 0.00 46.58 5.19
459 466 8.435931 TGTATATAATAATCCACAGGTGCTCT 57.564 34.615 0.00 0.00 0.00 4.09
460 467 9.672673 ATTGTATATAATAATCCACAGGTGCTC 57.327 33.333 0.00 0.00 0.00 4.26
488 495 4.776795 ACTCCGTTGTTGTCTTGTTTTT 57.223 36.364 0.00 0.00 0.00 1.94
489 496 4.457949 AGAACTCCGTTGTTGTCTTGTTTT 59.542 37.500 0.00 0.00 0.00 2.43
490 497 4.007659 AGAACTCCGTTGTTGTCTTGTTT 58.992 39.130 0.00 0.00 0.00 2.83
491 498 3.606687 AGAACTCCGTTGTTGTCTTGTT 58.393 40.909 0.00 0.00 0.00 2.83
492 499 3.261981 AGAACTCCGTTGTTGTCTTGT 57.738 42.857 0.00 0.00 0.00 3.16
493 500 3.302480 CGAAGAACTCCGTTGTTGTCTTG 60.302 47.826 0.00 0.00 29.27 3.02
494 501 2.864343 CGAAGAACTCCGTTGTTGTCTT 59.136 45.455 0.00 0.00 29.27 3.01
495 502 2.100252 TCGAAGAACTCCGTTGTTGTCT 59.900 45.455 0.00 0.00 29.27 3.41
496 503 2.466846 TCGAAGAACTCCGTTGTTGTC 58.533 47.619 0.00 0.00 29.27 3.18
497 504 2.159142 ACTCGAAGAACTCCGTTGTTGT 60.159 45.455 0.00 0.00 34.09 3.32
498 505 2.218759 CACTCGAAGAACTCCGTTGTTG 59.781 50.000 0.00 0.00 34.09 3.33
499 506 2.470821 CACTCGAAGAACTCCGTTGTT 58.529 47.619 0.00 0.00 34.09 2.83
500 507 1.269621 CCACTCGAAGAACTCCGTTGT 60.270 52.381 0.00 0.00 34.09 3.32
501 508 1.269621 ACCACTCGAAGAACTCCGTTG 60.270 52.381 0.00 0.00 34.09 4.10
502 509 1.038280 ACCACTCGAAGAACTCCGTT 58.962 50.000 0.00 0.00 34.09 4.44
503 510 1.038280 AACCACTCGAAGAACTCCGT 58.962 50.000 0.00 0.00 34.09 4.69
504 511 2.059541 GAAACCACTCGAAGAACTCCG 58.940 52.381 0.00 0.00 34.09 4.63
505 512 2.224209 TGGAAACCACTCGAAGAACTCC 60.224 50.000 0.00 0.00 34.09 3.85
506 513 3.107642 TGGAAACCACTCGAAGAACTC 57.892 47.619 0.00 0.00 34.09 3.01
518 525 0.958091 CGCAATCCTTGTGGAAACCA 59.042 50.000 0.00 0.00 46.80 3.67
519 526 0.958822 ACGCAATCCTTGTGGAAACC 59.041 50.000 5.52 0.00 46.80 3.27
520 527 1.930371 GCACGCAATCCTTGTGGAAAC 60.930 52.381 5.52 0.00 46.80 2.78
521 528 0.313672 GCACGCAATCCTTGTGGAAA 59.686 50.000 5.52 0.00 46.80 3.13
522 529 0.537143 AGCACGCAATCCTTGTGGAA 60.537 50.000 5.52 0.00 46.80 3.53
524 531 1.210931 CAGCACGCAATCCTTGTGG 59.789 57.895 5.52 0.00 45.14 4.17
525 532 0.311790 AACAGCACGCAATCCTTGTG 59.688 50.000 0.00 0.00 46.24 3.33
526 533 1.890876 TAACAGCACGCAATCCTTGT 58.109 45.000 0.00 0.00 0.00 3.16
527 534 2.162208 ACATAACAGCACGCAATCCTTG 59.838 45.455 0.00 0.00 0.00 3.61
528 535 2.162208 CACATAACAGCACGCAATCCTT 59.838 45.455 0.00 0.00 0.00 3.36
529 536 1.739466 CACATAACAGCACGCAATCCT 59.261 47.619 0.00 0.00 0.00 3.24
530 537 1.795162 GCACATAACAGCACGCAATCC 60.795 52.381 0.00 0.00 0.00 3.01
531 538 1.135717 TGCACATAACAGCACGCAATC 60.136 47.619 0.00 0.00 35.51 2.67
532 539 0.880441 TGCACATAACAGCACGCAAT 59.120 45.000 0.00 0.00 35.51 3.56
533 540 2.325218 TGCACATAACAGCACGCAA 58.675 47.368 0.00 0.00 35.51 4.85
534 541 4.055654 TGCACATAACAGCACGCA 57.944 50.000 0.00 0.00 35.51 5.24
538 545 1.896339 GCGACGTGCACATAACAGCA 61.896 55.000 18.64 0.00 45.45 4.41
539 546 1.225745 GCGACGTGCACATAACAGC 60.226 57.895 18.64 9.12 45.45 4.40
567 574 2.740826 AAACGGCGATGGTGGACG 60.741 61.111 16.62 0.00 0.00 4.79
579 586 0.248866 AAACTTTGCGAGCCAAACGG 60.249 50.000 0.00 0.00 38.46 4.44
586 593 4.035675 AGGAGCATATAAAACTTTGCGAGC 59.964 41.667 0.00 0.00 40.00 5.03
590 597 6.542370 TGTAGGAGGAGCATATAAAACTTTGC 59.458 38.462 0.00 0.00 35.34 3.68
610 617 7.602517 AGAAATGAATCGAGAAAACTGTAGG 57.397 36.000 0.00 0.00 0.00 3.18
616 623 7.576236 TGTCTCAAGAAATGAATCGAGAAAAC 58.424 34.615 0.00 0.00 37.67 2.43
645 2645 9.830975 TTCCACATATATTCAATCTCGAGAAAA 57.169 29.630 20.91 14.23 0.00 2.29
665 2665 4.022413 TCCGTTGGTTCATTATTCCACA 57.978 40.909 0.00 0.00 0.00 4.17
673 2673 1.702957 TCCCTCTTCCGTTGGTTCATT 59.297 47.619 0.00 0.00 0.00 2.57
674 2674 1.358152 TCCCTCTTCCGTTGGTTCAT 58.642 50.000 0.00 0.00 0.00 2.57
697 2697 1.136110 CGAGTTGGCCACTTGGTTTTT 59.864 47.619 3.88 0.00 35.01 1.94
698 2698 0.744281 CGAGTTGGCCACTTGGTTTT 59.256 50.000 3.88 0.00 35.01 2.43
699 2699 2.414750 CGAGTTGGCCACTTGGTTT 58.585 52.632 3.88 0.00 35.01 3.27
700 2700 4.157607 CGAGTTGGCCACTTGGTT 57.842 55.556 3.88 0.00 35.01 3.67
703 2703 1.156736 CTTACCGAGTTGGCCACTTG 58.843 55.000 3.88 10.25 43.94 3.16
704 2704 0.605589 GCTTACCGAGTTGGCCACTT 60.606 55.000 3.88 0.00 43.94 3.16
705 2705 1.003718 GCTTACCGAGTTGGCCACT 60.004 57.895 3.88 6.18 43.94 4.00
706 2706 0.248289 TAGCTTACCGAGTTGGCCAC 59.752 55.000 3.88 0.00 43.94 5.01
707 2707 0.248289 GTAGCTTACCGAGTTGGCCA 59.752 55.000 0.00 0.00 43.94 5.36
708 2708 0.535797 AGTAGCTTACCGAGTTGGCC 59.464 55.000 0.00 0.00 43.94 5.36
709 2709 3.515330 TTAGTAGCTTACCGAGTTGGC 57.485 47.619 0.00 0.00 43.94 4.52
710 2710 6.161381 TCTTTTTAGTAGCTTACCGAGTTGG 58.839 40.000 0.00 0.00 46.41 3.77
711 2711 7.647907 TTCTTTTTAGTAGCTTACCGAGTTG 57.352 36.000 0.00 0.00 0.00 3.16
712 2712 8.718734 CAATTCTTTTTAGTAGCTTACCGAGTT 58.281 33.333 0.00 0.00 0.00 3.01
713 2713 7.148457 GCAATTCTTTTTAGTAGCTTACCGAGT 60.148 37.037 0.00 0.00 0.00 4.18
714 2714 7.148474 TGCAATTCTTTTTAGTAGCTTACCGAG 60.148 37.037 0.00 0.00 0.00 4.63
715 2715 6.651643 TGCAATTCTTTTTAGTAGCTTACCGA 59.348 34.615 0.00 0.00 0.00 4.69
716 2716 6.837992 TGCAATTCTTTTTAGTAGCTTACCG 58.162 36.000 0.00 0.00 0.00 4.02
717 2717 9.290483 GATTGCAATTCTTTTTAGTAGCTTACC 57.710 33.333 14.33 0.00 0.00 2.85
718 2718 9.840427 TGATTGCAATTCTTTTTAGTAGCTTAC 57.160 29.630 14.33 0.00 0.00 2.34
720 2720 9.415544 CTTGATTGCAATTCTTTTTAGTAGCTT 57.584 29.630 14.33 0.00 32.68 3.74
721 2721 8.031277 CCTTGATTGCAATTCTTTTTAGTAGCT 58.969 33.333 14.33 0.00 32.68 3.32
722 2722 8.028938 TCCTTGATTGCAATTCTTTTTAGTAGC 58.971 33.333 14.33 0.00 32.68 3.58
723 2723 9.912634 TTCCTTGATTGCAATTCTTTTTAGTAG 57.087 29.630 14.33 0.07 32.68 2.57
724 2724 9.912634 CTTCCTTGATTGCAATTCTTTTTAGTA 57.087 29.630 14.33 0.00 32.68 1.82
725 2725 8.641541 TCTTCCTTGATTGCAATTCTTTTTAGT 58.358 29.630 14.33 0.00 32.68 2.24
726 2726 9.136952 CTCTTCCTTGATTGCAATTCTTTTTAG 57.863 33.333 14.33 6.66 32.68 1.85
727 2727 8.090214 CCTCTTCCTTGATTGCAATTCTTTTTA 58.910 33.333 14.33 0.00 32.68 1.52
728 2728 6.932960 CCTCTTCCTTGATTGCAATTCTTTTT 59.067 34.615 14.33 0.00 32.68 1.94
729 2729 6.461640 CCTCTTCCTTGATTGCAATTCTTTT 58.538 36.000 14.33 0.00 32.68 2.27
730 2730 5.046807 CCCTCTTCCTTGATTGCAATTCTTT 60.047 40.000 14.33 0.00 32.68 2.52
731 2731 4.465305 CCCTCTTCCTTGATTGCAATTCTT 59.535 41.667 14.33 0.00 32.68 2.52
732 2732 4.021916 CCCTCTTCCTTGATTGCAATTCT 58.978 43.478 14.33 0.00 32.68 2.40
733 2733 4.019174 TCCCTCTTCCTTGATTGCAATTC 58.981 43.478 14.33 7.58 32.68 2.17
734 2734 4.051661 TCCCTCTTCCTTGATTGCAATT 57.948 40.909 14.33 0.00 32.68 2.32
735 2735 3.744940 TCCCTCTTCCTTGATTGCAAT 57.255 42.857 12.83 12.83 32.68 3.56
736 2736 3.157087 GTTCCCTCTTCCTTGATTGCAA 58.843 45.455 0.00 0.00 0.00 4.08
737 2737 2.108075 TGTTCCCTCTTCCTTGATTGCA 59.892 45.455 0.00 0.00 0.00 4.08
738 2738 2.795329 TGTTCCCTCTTCCTTGATTGC 58.205 47.619 0.00 0.00 0.00 3.56
739 2739 5.302823 AGTTTTGTTCCCTCTTCCTTGATTG 59.697 40.000 0.00 0.00 0.00 2.67
740 2740 5.458595 AGTTTTGTTCCCTCTTCCTTGATT 58.541 37.500 0.00 0.00 0.00 2.57
741 2741 5.066913 AGTTTTGTTCCCTCTTCCTTGAT 57.933 39.130 0.00 0.00 0.00 2.57
742 2742 4.519906 AGTTTTGTTCCCTCTTCCTTGA 57.480 40.909 0.00 0.00 0.00 3.02
743 2743 4.644685 TCAAGTTTTGTTCCCTCTTCCTTG 59.355 41.667 0.00 0.00 0.00 3.61
744 2744 4.867086 TCAAGTTTTGTTCCCTCTTCCTT 58.133 39.130 0.00 0.00 0.00 3.36
745 2745 4.519906 TCAAGTTTTGTTCCCTCTTCCT 57.480 40.909 0.00 0.00 0.00 3.36
778 2778 8.710239 TCAACTAACTAATATTGCTGGTCCATA 58.290 33.333 0.00 0.00 0.00 2.74
779 2779 7.499232 GTCAACTAACTAATATTGCTGGTCCAT 59.501 37.037 0.00 0.00 0.00 3.41
780 2780 6.821665 GTCAACTAACTAATATTGCTGGTCCA 59.178 38.462 0.00 0.00 0.00 4.02
823 2823 4.344448 CTTTTTACGTCCAGTCGCAAAAA 58.656 39.130 0.00 7.55 40.93 1.94
824 2824 3.789459 GCTTTTTACGTCCAGTCGCAAAA 60.789 43.478 0.00 0.00 35.31 2.44
825 2825 2.286536 GCTTTTTACGTCCAGTCGCAAA 60.287 45.455 0.00 0.00 0.00 3.68
826 2826 1.262151 GCTTTTTACGTCCAGTCGCAA 59.738 47.619 0.00 0.00 0.00 4.85
827 2827 0.863144 GCTTTTTACGTCCAGTCGCA 59.137 50.000 0.00 0.00 0.00 5.10
828 2828 0.863144 TGCTTTTTACGTCCAGTCGC 59.137 50.000 0.00 0.00 0.00 5.19
829 2829 3.806316 ATTGCTTTTTACGTCCAGTCG 57.194 42.857 0.00 0.00 0.00 4.18
830 2830 7.971455 ACTAATATTGCTTTTTACGTCCAGTC 58.029 34.615 0.00 0.00 0.00 3.51
831 2831 7.916914 ACTAATATTGCTTTTTACGTCCAGT 57.083 32.000 0.00 0.00 0.00 4.00
832 2832 9.061610 CAAACTAATATTGCTTTTTACGTCCAG 57.938 33.333 0.00 0.00 0.00 3.86
833 2833 8.569641 ACAAACTAATATTGCTTTTTACGTCCA 58.430 29.630 0.00 0.00 0.00 4.02
834 2834 8.959734 ACAAACTAATATTGCTTTTTACGTCC 57.040 30.769 0.00 0.00 0.00 4.79
835 2835 9.058424 GGACAAACTAATATTGCTTTTTACGTC 57.942 33.333 0.00 0.41 0.00 4.34
836 2836 8.024865 GGGACAAACTAATATTGCTTTTTACGT 58.975 33.333 0.00 0.00 0.00 3.57
837 2837 7.217447 CGGGACAAACTAATATTGCTTTTTACG 59.783 37.037 0.00 0.00 0.00 3.18
838 2838 8.024865 ACGGGACAAACTAATATTGCTTTTTAC 58.975 33.333 0.00 0.00 0.00 2.01
839 2839 8.024285 CACGGGACAAACTAATATTGCTTTTTA 58.976 33.333 0.00 0.00 0.00 1.52
840 2840 6.866248 CACGGGACAAACTAATATTGCTTTTT 59.134 34.615 0.00 0.00 0.00 1.94
845 2845 3.127895 TGCACGGGACAAACTAATATTGC 59.872 43.478 0.00 0.00 0.00 3.56
857 2857 1.522806 GACAGTTGTGCACGGGACA 60.523 57.895 13.13 0.00 0.00 4.02
864 2864 3.500448 TCAAATAGGGACAGTTGTGCA 57.500 42.857 6.12 0.00 38.19 4.57
872 2872 2.714250 ACCACAGGTTCAAATAGGGACA 59.286 45.455 0.00 0.00 27.29 4.02
873 2873 3.434940 ACCACAGGTTCAAATAGGGAC 57.565 47.619 0.00 0.00 27.29 4.46
874 2874 4.148838 CAAACCACAGGTTCAAATAGGGA 58.851 43.478 1.34 0.00 46.20 4.20
877 2877 5.529581 AACCAAACCACAGGTTCAAATAG 57.470 39.130 1.34 0.00 46.20 1.73
878 2878 5.450688 CGAAACCAAACCACAGGTTCAAATA 60.451 40.000 1.34 0.00 46.20 1.40
879 2879 4.679372 CGAAACCAAACCACAGGTTCAAAT 60.679 41.667 1.34 0.00 46.20 2.32
881 2881 2.164624 CGAAACCAAACCACAGGTTCAA 59.835 45.455 1.34 0.00 46.20 2.69
882 2882 1.746220 CGAAACCAAACCACAGGTTCA 59.254 47.619 1.34 0.00 46.20 3.18
883 2883 1.746787 ACGAAACCAAACCACAGGTTC 59.253 47.619 1.34 0.00 46.20 3.62
885 2885 1.099689 CACGAAACCAAACCACAGGT 58.900 50.000 0.00 0.00 40.61 4.00
886 2886 1.064952 GTCACGAAACCAAACCACAGG 59.935 52.381 0.00 0.00 0.00 4.00
887 2887 1.064952 GGTCACGAAACCAAACCACAG 59.935 52.381 6.17 0.00 39.27 3.66
890 2890 1.096386 CCGGTCACGAAACCAAACCA 61.096 55.000 10.72 0.00 44.60 3.67
891 2891 1.650363 CCGGTCACGAAACCAAACC 59.350 57.895 10.72 0.00 44.60 3.27
892 2892 1.009335 GCCGGTCACGAAACCAAAC 60.009 57.895 1.90 0.00 44.60 2.93
893 2893 2.188161 GGCCGGTCACGAAACCAAA 61.188 57.895 0.00 0.00 44.60 3.28
935 2935 5.353394 TCCTTGCGGATTAATTAGACACT 57.647 39.130 0.00 0.00 33.30 3.55
936 2936 5.501897 CGTTCCTTGCGGATTAATTAGACAC 60.502 44.000 0.00 0.00 39.58 3.67
937 2937 4.569162 CGTTCCTTGCGGATTAATTAGACA 59.431 41.667 0.00 0.00 39.58 3.41
938 2938 4.807304 TCGTTCCTTGCGGATTAATTAGAC 59.193 41.667 0.00 0.00 39.58 2.59
939 2939 5.013568 TCGTTCCTTGCGGATTAATTAGA 57.986 39.130 0.00 0.00 39.58 2.10
940 2940 5.728351 TTCGTTCCTTGCGGATTAATTAG 57.272 39.130 0.00 0.00 39.58 1.73
941 2941 6.687081 ATTTCGTTCCTTGCGGATTAATTA 57.313 33.333 0.00 0.00 39.58 1.40
942 2942 5.576447 ATTTCGTTCCTTGCGGATTAATT 57.424 34.783 0.00 0.00 39.58 1.40
943 2943 6.877611 ATATTTCGTTCCTTGCGGATTAAT 57.122 33.333 0.00 0.00 39.58 1.40
944 2944 6.687081 AATATTTCGTTCCTTGCGGATTAA 57.313 33.333 0.00 0.00 39.58 1.40
954 2954 7.387948 CGGGAATAGATGAAATATTTCGTTCCT 59.612 37.037 24.82 19.49 40.01 3.36
964 2964 7.872993 GTGATCAAGACGGGAATAGATGAAATA 59.127 37.037 0.00 0.00 0.00 1.40
973 2973 1.202486 GGCGTGATCAAGACGGGAATA 60.202 52.381 13.18 0.00 37.30 1.75
984 2985 1.447663 CATGGTGACGGCGTGATCA 60.448 57.895 21.19 18.36 0.00 2.92
989 2990 4.388499 GGTCCATGGTGACGGCGT 62.388 66.667 14.65 14.65 36.07 5.68
1007 3008 0.741221 GTCTGGCCACCGAGTTGATC 60.741 60.000 0.00 0.00 0.00 2.92
1008 3009 1.296715 GTCTGGCCACCGAGTTGAT 59.703 57.895 0.00 0.00 0.00 2.57
1009 3010 2.741092 GTCTGGCCACCGAGTTGA 59.259 61.111 0.00 0.00 0.00 3.18
1011 3012 2.526873 AGGTCTGGCCACCGAGTT 60.527 61.111 0.00 0.00 41.90 3.01
1012 3013 3.314331 CAGGTCTGGCCACCGAGT 61.314 66.667 0.00 0.00 41.90 4.18
1068 3069 3.918220 GCGAAGTCTGCGGCATCG 61.918 66.667 16.84 16.84 39.81 3.84
1077 3078 0.867753 CATAGAAGCGCGCGAAGTCT 60.868 55.000 37.18 30.25 0.00 3.24
1085 3086 1.922903 CAGACAGCATAGAAGCGCG 59.077 57.895 0.00 0.00 40.15 6.86
1086 3087 1.640604 GCAGACAGCATAGAAGCGC 59.359 57.895 0.00 0.00 44.79 5.92
1143 3144 2.429739 GTCGTCGTGGTCCGGAAC 60.430 66.667 14.24 14.24 37.11 3.62
1144 3145 4.029186 CGTCGTCGTGGTCCGGAA 62.029 66.667 5.23 0.00 37.11 4.30
1152 3153 1.514228 CTGATGGGTCGTCGTCGTG 60.514 63.158 1.33 0.00 38.33 4.35
1155 3156 0.458025 GGAACTGATGGGTCGTCGTC 60.458 60.000 0.00 0.00 31.06 4.20
1186 3187 2.203084 TTTGTCGGCCGCAGTGAA 60.203 55.556 23.51 10.42 0.00 3.18
1227 3228 2.354259 GACTTGGAGAAGATGCACCTG 58.646 52.381 0.00 0.00 32.98 4.00
1284 3285 0.179020 TGCACACCCAGTTTCCTCTG 60.179 55.000 0.00 0.00 35.45 3.35
1334 3335 2.558286 TTCAGGAAGCGGTCGACGT 61.558 57.895 9.92 0.00 46.52 4.34
1449 3450 6.296026 GGTGATGCTGTATAAAAGGATGGTA 58.704 40.000 0.00 0.00 0.00 3.25
1471 3472 1.005450 ACGCCCTTTATCAATGTGGGT 59.995 47.619 0.00 0.00 39.97 4.51
1491 3492 2.677228 GCCCTGAAGCTGGCCTTA 59.323 61.111 3.32 0.00 41.97 2.69
1861 3877 1.815421 CCGGCGTTGATTCCTCCTG 60.815 63.158 6.01 0.00 0.00 3.86
1908 3930 2.261671 CGGTCAGCAAGGCTACGT 59.738 61.111 0.00 0.00 36.40 3.57
2095 4128 0.920763 TCTTGCCATCCCATCCTGGT 60.921 55.000 0.00 0.00 35.17 4.00
2244 4278 1.604604 TTTGGTAGCACTTCACCAGC 58.395 50.000 0.00 0.00 45.29 4.85
2245 4279 5.240623 TGTTAATTTGGTAGCACTTCACCAG 59.759 40.000 0.00 0.00 45.29 4.00
2249 4301 7.517614 TCAATGTTAATTTGGTAGCACTTCA 57.482 32.000 0.00 0.00 0.00 3.02
2354 4416 5.048083 ACACCGTGAAACTAGGTTCGTAATA 60.048 40.000 15.63 0.00 35.85 0.98
2395 4457 1.345741 TGAGAGCTGTTCACTCCAAGG 59.654 52.381 0.00 0.00 34.56 3.61
2462 4525 7.329717 GGTCTTTGTCTTGTTGTAGTAGATCAG 59.670 40.741 0.00 0.00 0.00 2.90
2670 4757 6.944862 AGGAGTCTATGCAAATTTGAGTTCTT 59.055 34.615 22.31 4.99 0.00 2.52
2672 4759 6.404074 CCAGGAGTCTATGCAAATTTGAGTTC 60.404 42.308 22.31 11.49 0.00 3.01
2686 4773 6.436027 TGAGACAAATCTACCAGGAGTCTAT 58.564 40.000 0.00 0.00 35.24 1.98
2689 4776 5.407407 TTGAGACAAATCTACCAGGAGTC 57.593 43.478 0.00 0.00 34.34 3.36
2692 4779 5.560722 TGTTTGAGACAAATCTACCAGGA 57.439 39.130 0.00 0.00 34.34 3.86
2793 4893 5.703592 TCGACACAACTAAAACAATATGCCT 59.296 36.000 0.00 0.00 0.00 4.75
2801 4901 8.821147 ACACTATATTCGACACAACTAAAACA 57.179 30.769 0.00 0.00 0.00 2.83
2803 4903 9.911138 TGTACACTATATTCGACACAACTAAAA 57.089 29.630 0.00 0.00 0.00 1.52
2804 4904 9.911138 TTGTACACTATATTCGACACAACTAAA 57.089 29.630 0.00 0.00 0.00 1.85
2805 4905 9.563898 CTTGTACACTATATTCGACACAACTAA 57.436 33.333 0.00 0.00 0.00 2.24
2806 4906 8.186163 CCTTGTACACTATATTCGACACAACTA 58.814 37.037 0.00 0.00 0.00 2.24
2894 7756 3.707102 GAGAGGCCTAGGATACAAGTGTT 59.293 47.826 14.75 0.00 41.41 3.32
2925 7787 0.543410 ACATCGTGTGTCTACCCCCA 60.543 55.000 0.00 0.00 35.77 4.96
2930 7792 4.738740 GCATAGGTTACATCGTGTGTCTAC 59.261 45.833 0.00 1.46 42.29 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.