Multiple sequence alignment - TraesCS3B01G596000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G596000 chr3B 100.000 2199 0 0 1 2199 818927870 818925672 0.000000e+00 4061.0
1 TraesCS3B01G596000 chr3B 97.831 461 10 0 1 461 820555794 820555334 0.000000e+00 797.0
2 TraesCS3B01G596000 chr3B 100.000 387 0 0 2439 2825 818925432 818925046 0.000000e+00 715.0
3 TraesCS3B01G596000 chr3A 82.232 1756 121 78 518 2188 741625832 741624183 0.000000e+00 1338.0
4 TraesCS3B01G596000 chr3A 87.866 239 16 8 2591 2825 741623939 741623710 4.640000e-68 268.0
5 TraesCS3B01G596000 chr3A 92.778 180 4 4 2440 2614 741624135 741623960 4.670000e-63 252.0
6 TraesCS3B01G596000 chr3D 79.723 1879 135 114 460 2197 608512767 608510994 0.000000e+00 1133.0
7 TraesCS3B01G596000 chr3D 85.204 392 22 19 2448 2825 608510956 608510587 1.240000e-98 370.0
8 TraesCS3B01G596000 chr6B 98.915 461 5 0 1 461 391085996 391086456 0.000000e+00 824.0
9 TraesCS3B01G596000 chr5A 98.268 462 8 0 1 462 328022435 328022896 0.000000e+00 809.0
10 TraesCS3B01G596000 chr5A 100.000 30 0 0 1063 1092 103569118 103569147 3.930000e-04 56.5
11 TraesCS3B01G596000 chr7B 98.261 460 8 0 1 460 192774162 192773703 0.000000e+00 806.0
12 TraesCS3B01G596000 chr5B 98.261 460 8 0 1 460 682458906 682459365 0.000000e+00 806.0
13 TraesCS3B01G596000 chr6A 98.043 460 9 0 1 460 11431826 11432285 0.000000e+00 800.0
14 TraesCS3B01G596000 chr4A 97.826 460 10 0 1 460 717461381 717461840 0.000000e+00 795.0
15 TraesCS3B01G596000 chr2B 97.826 460 10 0 1 460 47196122 47196581 0.000000e+00 795.0
16 TraesCS3B01G596000 chr1A 98.031 457 9 0 4 460 12674640 12674184 0.000000e+00 795.0
17 TraesCS3B01G596000 chr5D 100.000 30 0 0 1063 1092 99418743 99418714 3.930000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G596000 chr3B 818925046 818927870 2824 True 2388.000000 4061 100.000000 1 2825 2 chr3B.!!$R2 2824
1 TraesCS3B01G596000 chr3A 741623710 741625832 2122 True 619.333333 1338 87.625333 518 2825 3 chr3A.!!$R1 2307
2 TraesCS3B01G596000 chr3D 608510587 608512767 2180 True 751.500000 1133 82.463500 460 2825 2 chr3D.!!$R1 2365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1088 0.105039 GTCCACTCCATCCATCCGTC 59.895 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2169 0.108186 TGGATCGCAAGCAACGAGAT 60.108 50.0 0.0 0.0 43.74 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.047274 ACGGCGGTGGATGTCAAG 60.047 61.111 13.24 0.00 0.00 3.02
18 19 2.264480 CGGCGGTGGATGTCAAGA 59.736 61.111 0.00 0.00 0.00 3.02
19 20 1.153369 CGGCGGTGGATGTCAAGAT 60.153 57.895 0.00 0.00 0.00 2.40
20 21 1.154205 CGGCGGTGGATGTCAAGATC 61.154 60.000 0.00 0.00 0.00 2.75
21 22 0.107703 GGCGGTGGATGTCAAGATCA 60.108 55.000 0.00 0.00 0.00 2.92
22 23 1.009829 GCGGTGGATGTCAAGATCAC 58.990 55.000 0.00 0.00 0.00 3.06
23 24 1.280982 CGGTGGATGTCAAGATCACG 58.719 55.000 0.00 0.00 0.00 4.35
24 25 1.656652 GGTGGATGTCAAGATCACGG 58.343 55.000 0.00 0.00 0.00 4.94
25 26 1.207089 GGTGGATGTCAAGATCACGGA 59.793 52.381 0.00 0.00 0.00 4.69
26 27 2.158900 GGTGGATGTCAAGATCACGGAT 60.159 50.000 0.00 0.00 0.00 4.18
27 28 2.868583 GTGGATGTCAAGATCACGGATG 59.131 50.000 0.00 0.00 0.00 3.51
28 29 2.765699 TGGATGTCAAGATCACGGATGA 59.234 45.455 0.00 0.00 39.83 2.92
29 30 3.181472 TGGATGTCAAGATCACGGATGAG 60.181 47.826 0.00 0.00 38.57 2.90
30 31 2.299993 TGTCAAGATCACGGATGAGC 57.700 50.000 0.00 0.00 41.82 4.26
31 32 1.550072 TGTCAAGATCACGGATGAGCA 59.450 47.619 0.00 0.00 44.05 4.26
32 33 1.929836 GTCAAGATCACGGATGAGCAC 59.070 52.381 0.00 0.00 44.05 4.40
33 34 0.926155 CAAGATCACGGATGAGCACG 59.074 55.000 0.00 0.00 44.05 5.34
34 35 0.179100 AAGATCACGGATGAGCACGG 60.179 55.000 0.00 0.00 44.05 4.94
35 36 1.592669 GATCACGGATGAGCACGGG 60.593 63.158 0.00 0.00 41.12 5.28
36 37 2.678580 TCACGGATGAGCACGGGA 60.679 61.111 0.00 0.00 40.67 5.14
37 38 2.058001 TCACGGATGAGCACGGGAT 61.058 57.895 0.00 0.00 37.64 3.85
38 39 1.592669 CACGGATGAGCACGGGATC 60.593 63.158 0.00 0.00 35.00 3.36
39 40 2.355126 CGGATGAGCACGGGATCG 60.355 66.667 0.00 0.00 43.02 3.69
40 41 2.029666 GGATGAGCACGGGATCGG 59.970 66.667 0.00 0.00 41.39 4.18
41 42 2.029666 GATGAGCACGGGATCGGG 59.970 66.667 0.00 0.00 43.82 5.14
42 43 3.521529 GATGAGCACGGGATCGGGG 62.522 68.421 0.00 0.00 40.75 5.73
51 52 4.918201 GGATCGGGGCCAGCGAAG 62.918 72.222 4.39 0.00 0.00 3.79
52 53 4.918201 GATCGGGGCCAGCGAAGG 62.918 72.222 4.39 0.00 0.00 3.46
60 61 4.740822 CCAGCGAAGGGGTTGGGG 62.741 72.222 0.00 0.00 34.93 4.96
61 62 3.646715 CAGCGAAGGGGTTGGGGA 61.647 66.667 0.00 0.00 0.00 4.81
62 63 3.647771 AGCGAAGGGGTTGGGGAC 61.648 66.667 0.00 0.00 0.00 4.46
64 65 3.315949 CGAAGGGGTTGGGGACGA 61.316 66.667 0.00 0.00 0.00 4.20
65 66 2.350134 GAAGGGGTTGGGGACGAC 59.650 66.667 0.00 0.00 44.59 4.34
66 67 3.600898 GAAGGGGTTGGGGACGACG 62.601 68.421 0.00 0.00 46.42 5.12
69 70 3.628982 GGGTTGGGGACGACGGAA 61.629 66.667 0.00 0.00 46.42 4.30
70 71 2.357881 GGTTGGGGACGACGGAAC 60.358 66.667 0.00 0.00 46.42 3.62
71 72 2.357881 GTTGGGGACGACGGAACC 60.358 66.667 0.00 0.00 34.37 3.62
72 73 3.993584 TTGGGGACGACGGAACCG 61.994 66.667 11.83 11.83 46.03 4.44
75 76 3.455469 GGGACGACGGAACCGGAT 61.455 66.667 9.46 0.00 44.69 4.18
76 77 2.202703 GGACGACGGAACCGGATG 60.203 66.667 9.46 8.78 44.69 3.51
77 78 2.884207 GACGACGGAACCGGATGC 60.884 66.667 9.46 0.00 44.69 3.91
78 79 4.789075 ACGACGGAACCGGATGCG 62.789 66.667 23.51 23.51 44.69 4.73
80 81 4.137872 GACGGAACCGGATGCGGA 62.138 66.667 33.63 0.00 44.69 5.54
81 82 4.143333 ACGGAACCGGATGCGGAG 62.143 66.667 33.63 20.65 44.69 4.63
82 83 4.891727 CGGAACCGGATGCGGAGG 62.892 72.222 33.63 13.57 35.56 4.30
83 84 3.467226 GGAACCGGATGCGGAGGA 61.467 66.667 33.63 0.00 0.00 3.71
84 85 2.107141 GAACCGGATGCGGAGGAG 59.893 66.667 33.63 5.35 0.00 3.69
85 86 3.447025 GAACCGGATGCGGAGGAGG 62.447 68.421 33.63 4.52 0.00 4.30
104 105 4.195334 GGGTGAGGCCATGGCGAT 62.195 66.667 29.90 21.20 43.06 4.58
105 106 2.903855 GGTGAGGCCATGGCGATG 60.904 66.667 29.90 1.01 43.06 3.84
106 107 2.124570 GTGAGGCCATGGCGATGT 60.125 61.111 29.90 14.63 43.06 3.06
107 108 2.182842 GTGAGGCCATGGCGATGTC 61.183 63.158 29.90 22.03 43.06 3.06
108 109 2.969238 GAGGCCATGGCGATGTCG 60.969 66.667 29.90 0.00 43.06 4.35
109 110 4.552365 AGGCCATGGCGATGTCGG 62.552 66.667 29.90 0.00 43.06 4.79
111 112 4.856801 GCCATGGCGATGTCGGGT 62.857 66.667 23.48 0.00 40.23 5.28
112 113 2.896854 CCATGGCGATGTCGGGTG 60.897 66.667 7.98 0.00 40.23 4.61
113 114 2.896854 CATGGCGATGTCGGGTGG 60.897 66.667 0.00 0.00 40.23 4.61
114 115 4.175337 ATGGCGATGTCGGGTGGG 62.175 66.667 4.44 0.00 40.23 4.61
116 117 4.530857 GGCGATGTCGGGTGGGAG 62.531 72.222 4.44 0.00 40.23 4.30
117 118 3.458163 GCGATGTCGGGTGGGAGA 61.458 66.667 4.44 0.00 40.23 3.71
118 119 2.808315 CGATGTCGGGTGGGAGAG 59.192 66.667 0.00 0.00 35.37 3.20
119 120 2.786495 CGATGTCGGGTGGGAGAGG 61.786 68.421 0.00 0.00 35.37 3.69
120 121 2.365635 ATGTCGGGTGGGAGAGGG 60.366 66.667 0.00 0.00 0.00 4.30
121 122 2.873557 GATGTCGGGTGGGAGAGGGA 62.874 65.000 0.00 0.00 0.00 4.20
122 123 2.284405 GTCGGGTGGGAGAGGGAA 60.284 66.667 0.00 0.00 0.00 3.97
123 124 2.038975 TCGGGTGGGAGAGGGAAG 59.961 66.667 0.00 0.00 0.00 3.46
124 125 3.083997 CGGGTGGGAGAGGGAAGG 61.084 72.222 0.00 0.00 0.00 3.46
125 126 2.125225 GGGTGGGAGAGGGAAGGT 59.875 66.667 0.00 0.00 0.00 3.50
126 127 2.301738 GGGTGGGAGAGGGAAGGTG 61.302 68.421 0.00 0.00 0.00 4.00
127 128 2.301738 GGTGGGAGAGGGAAGGTGG 61.302 68.421 0.00 0.00 0.00 4.61
128 129 1.539124 GTGGGAGAGGGAAGGTGGT 60.539 63.158 0.00 0.00 0.00 4.16
129 130 1.538876 TGGGAGAGGGAAGGTGGTG 60.539 63.158 0.00 0.00 0.00 4.17
130 131 2.301738 GGGAGAGGGAAGGTGGTGG 61.302 68.421 0.00 0.00 0.00 4.61
131 132 1.539124 GGAGAGGGAAGGTGGTGGT 60.539 63.158 0.00 0.00 0.00 4.16
132 133 1.679898 GAGAGGGAAGGTGGTGGTG 59.320 63.158 0.00 0.00 0.00 4.17
133 134 2.034221 GAGGGAAGGTGGTGGTGC 59.966 66.667 0.00 0.00 0.00 5.01
134 135 3.901797 GAGGGAAGGTGGTGGTGCG 62.902 68.421 0.00 0.00 0.00 5.34
137 138 4.643387 GAAGGTGGTGGTGCGGCT 62.643 66.667 0.00 0.00 0.00 5.52
138 139 4.954970 AAGGTGGTGGTGCGGCTG 62.955 66.667 0.00 0.00 0.00 4.85
147 148 4.785453 GTGCGGCTGGAGGGGAAG 62.785 72.222 0.00 0.00 0.00 3.46
150 151 4.479993 CGGCTGGAGGGGAAGCAG 62.480 72.222 0.00 0.00 41.36 4.24
151 152 4.811364 GGCTGGAGGGGAAGCAGC 62.811 72.222 0.00 0.00 41.36 5.25
153 154 4.479993 CTGGAGGGGAAGCAGCGG 62.480 72.222 0.00 0.00 0.00 5.52
161 162 4.087892 GAAGCAGCGGCAGGGAGA 62.088 66.667 12.44 0.00 44.61 3.71
162 163 3.612247 GAAGCAGCGGCAGGGAGAA 62.612 63.158 12.44 0.00 44.61 2.87
163 164 3.618780 AAGCAGCGGCAGGGAGAAG 62.619 63.158 12.44 0.00 44.61 2.85
164 165 4.087892 GCAGCGGCAGGGAGAAGA 62.088 66.667 3.18 0.00 40.72 2.87
165 166 2.665000 CAGCGGCAGGGAGAAGAA 59.335 61.111 1.45 0.00 0.00 2.52
166 167 1.449246 CAGCGGCAGGGAGAAGAAG 60.449 63.158 1.45 0.00 0.00 2.85
167 168 2.821810 GCGGCAGGGAGAAGAAGC 60.822 66.667 0.00 0.00 0.00 3.86
168 169 2.510238 CGGCAGGGAGAAGAAGCG 60.510 66.667 0.00 0.00 0.00 4.68
169 170 2.124942 GGCAGGGAGAAGAAGCGG 60.125 66.667 0.00 0.00 0.00 5.52
170 171 2.821810 GCAGGGAGAAGAAGCGGC 60.822 66.667 0.00 0.00 0.00 6.53
171 172 2.510238 CAGGGAGAAGAAGCGGCG 60.510 66.667 0.51 0.51 0.00 6.46
172 173 3.775654 AGGGAGAAGAAGCGGCGG 61.776 66.667 9.78 0.00 0.00 6.13
265 266 2.622436 CGGAAGCTGTTTAGGAAGAGG 58.378 52.381 0.00 0.00 0.00 3.69
266 267 2.233922 CGGAAGCTGTTTAGGAAGAGGA 59.766 50.000 0.00 0.00 0.00 3.71
267 268 3.118592 CGGAAGCTGTTTAGGAAGAGGAT 60.119 47.826 0.00 0.00 0.00 3.24
268 269 4.447290 GGAAGCTGTTTAGGAAGAGGATC 58.553 47.826 0.00 0.00 0.00 3.36
269 270 3.810310 AGCTGTTTAGGAAGAGGATCG 57.190 47.619 0.00 0.00 42.67 3.69
270 271 3.100671 AGCTGTTTAGGAAGAGGATCGT 58.899 45.455 0.00 0.00 42.67 3.73
271 272 3.118956 AGCTGTTTAGGAAGAGGATCGTG 60.119 47.826 0.00 0.00 42.67 4.35
272 273 3.368531 GCTGTTTAGGAAGAGGATCGTGT 60.369 47.826 0.00 0.00 42.67 4.49
273 274 4.177026 CTGTTTAGGAAGAGGATCGTGTG 58.823 47.826 0.00 0.00 42.67 3.82
274 275 3.830178 TGTTTAGGAAGAGGATCGTGTGA 59.170 43.478 0.00 0.00 42.67 3.58
275 276 4.082190 TGTTTAGGAAGAGGATCGTGTGAG 60.082 45.833 0.00 0.00 42.67 3.51
276 277 1.479709 AGGAAGAGGATCGTGTGAGG 58.520 55.000 0.00 0.00 42.67 3.86
277 278 1.006043 AGGAAGAGGATCGTGTGAGGA 59.994 52.381 0.00 0.00 42.67 3.71
278 279 1.825474 GGAAGAGGATCGTGTGAGGAA 59.175 52.381 0.00 0.00 42.67 3.36
279 280 2.233922 GGAAGAGGATCGTGTGAGGAAA 59.766 50.000 0.00 0.00 42.67 3.13
280 281 3.306780 GGAAGAGGATCGTGTGAGGAAAA 60.307 47.826 0.00 0.00 42.67 2.29
281 282 3.320673 AGAGGATCGTGTGAGGAAAAC 57.679 47.619 0.00 0.00 42.67 2.43
282 283 2.900546 AGAGGATCGTGTGAGGAAAACT 59.099 45.455 0.00 0.00 42.67 2.66
283 284 2.996621 GAGGATCGTGTGAGGAAAACTG 59.003 50.000 0.00 0.00 0.00 3.16
284 285 2.632996 AGGATCGTGTGAGGAAAACTGA 59.367 45.455 0.00 0.00 0.00 3.41
285 286 3.261897 AGGATCGTGTGAGGAAAACTGAT 59.738 43.478 0.00 0.00 0.00 2.90
286 287 4.466370 AGGATCGTGTGAGGAAAACTGATA 59.534 41.667 0.00 0.00 0.00 2.15
287 288 4.567159 GGATCGTGTGAGGAAAACTGATAC 59.433 45.833 0.00 0.00 0.00 2.24
288 289 3.921677 TCGTGTGAGGAAAACTGATACC 58.078 45.455 0.00 0.00 0.00 2.73
289 290 3.322541 TCGTGTGAGGAAAACTGATACCA 59.677 43.478 0.00 0.00 0.00 3.25
290 291 4.020573 TCGTGTGAGGAAAACTGATACCAT 60.021 41.667 0.00 0.00 0.00 3.55
291 292 5.186215 TCGTGTGAGGAAAACTGATACCATA 59.814 40.000 0.00 0.00 0.00 2.74
292 293 6.049149 CGTGTGAGGAAAACTGATACCATAT 58.951 40.000 0.00 0.00 0.00 1.78
293 294 6.538742 CGTGTGAGGAAAACTGATACCATATT 59.461 38.462 0.00 0.00 0.00 1.28
294 295 7.465916 CGTGTGAGGAAAACTGATACCATATTG 60.466 40.741 0.00 0.00 0.00 1.90
295 296 7.336931 GTGTGAGGAAAACTGATACCATATTGT 59.663 37.037 0.00 0.00 0.00 2.71
296 297 7.888021 TGTGAGGAAAACTGATACCATATTGTT 59.112 33.333 0.00 0.00 0.00 2.83
297 298 8.739972 GTGAGGAAAACTGATACCATATTGTTT 58.260 33.333 0.00 0.00 0.00 2.83
298 299 8.739039 TGAGGAAAACTGATACCATATTGTTTG 58.261 33.333 0.00 0.00 0.00 2.93
299 300 8.066612 AGGAAAACTGATACCATATTGTTTGG 57.933 34.615 0.00 0.00 40.26 3.28
300 301 6.756542 GGAAAACTGATACCATATTGTTTGGC 59.243 38.462 0.00 0.00 37.81 4.52
301 302 6.849085 AAACTGATACCATATTGTTTGGCA 57.151 33.333 0.00 0.00 37.81 4.92
302 303 6.849085 AACTGATACCATATTGTTTGGCAA 57.151 33.333 0.00 0.00 41.89 4.52
304 305 6.808829 ACTGATACCATATTGTTTGGCAATG 58.191 36.000 0.00 0.00 46.40 2.82
305 306 5.599732 TGATACCATATTGTTTGGCAATGC 58.400 37.500 0.00 0.00 46.40 3.56
306 307 2.891112 ACCATATTGTTTGGCAATGCG 58.109 42.857 0.00 0.00 46.40 4.73
307 308 2.495270 ACCATATTGTTTGGCAATGCGA 59.505 40.909 0.00 0.00 46.40 5.10
308 309 2.859538 CCATATTGTTTGGCAATGCGAC 59.140 45.455 0.00 0.00 46.40 5.19
309 310 3.429272 CCATATTGTTTGGCAATGCGACT 60.429 43.478 0.00 0.00 46.40 4.18
310 311 2.352503 ATTGTTTGGCAATGCGACTC 57.647 45.000 0.00 0.00 45.35 3.36
311 312 1.317613 TTGTTTGGCAATGCGACTCT 58.682 45.000 0.00 0.00 31.07 3.24
312 313 0.874390 TGTTTGGCAATGCGACTCTC 59.126 50.000 0.00 0.00 0.00 3.20
313 314 0.874390 GTTTGGCAATGCGACTCTCA 59.126 50.000 0.00 0.00 0.00 3.27
314 315 1.266718 GTTTGGCAATGCGACTCTCAA 59.733 47.619 0.00 0.00 0.00 3.02
315 316 1.825090 TTGGCAATGCGACTCTCAAT 58.175 45.000 0.00 0.00 0.00 2.57
316 317 1.825090 TGGCAATGCGACTCTCAATT 58.175 45.000 0.00 0.00 0.00 2.32
317 318 1.469703 TGGCAATGCGACTCTCAATTG 59.530 47.619 0.00 0.00 0.00 2.32
318 319 1.739466 GGCAATGCGACTCTCAATTGA 59.261 47.619 8.12 8.12 0.00 2.57
319 320 2.357009 GGCAATGCGACTCTCAATTGAT 59.643 45.455 8.96 0.00 0.00 2.57
320 321 3.181493 GGCAATGCGACTCTCAATTGATT 60.181 43.478 8.96 0.00 0.00 2.57
321 322 4.418392 GCAATGCGACTCTCAATTGATTT 58.582 39.130 8.96 0.00 0.00 2.17
322 323 4.264614 GCAATGCGACTCTCAATTGATTTG 59.735 41.667 8.96 4.91 36.61 2.32
323 324 4.627611 ATGCGACTCTCAATTGATTTGG 57.372 40.909 8.96 0.00 35.92 3.28
324 325 2.749076 TGCGACTCTCAATTGATTTGGG 59.251 45.455 8.96 0.00 37.13 4.12
325 326 2.749621 GCGACTCTCAATTGATTTGGGT 59.250 45.455 8.96 3.28 37.10 4.51
326 327 3.426695 GCGACTCTCAATTGATTTGGGTG 60.427 47.826 8.96 0.65 37.10 4.61
327 328 3.426695 CGACTCTCAATTGATTTGGGTGC 60.427 47.826 8.96 0.00 37.10 5.01
328 329 3.499338 ACTCTCAATTGATTTGGGTGCA 58.501 40.909 8.96 0.00 37.10 4.57
329 330 4.091549 ACTCTCAATTGATTTGGGTGCAT 58.908 39.130 8.96 0.00 37.10 3.96
330 331 5.263599 ACTCTCAATTGATTTGGGTGCATA 58.736 37.500 8.96 0.00 37.10 3.14
331 332 5.126061 ACTCTCAATTGATTTGGGTGCATAC 59.874 40.000 8.96 0.00 37.10 2.39
332 333 5.015515 TCTCAATTGATTTGGGTGCATACA 58.984 37.500 8.96 0.00 37.10 2.29
333 334 5.070770 TCAATTGATTTGGGTGCATACAC 57.929 39.130 3.38 0.00 38.89 2.90
334 335 4.380339 TCAATTGATTTGGGTGCATACACG 60.380 41.667 3.38 0.00 39.75 4.49
349 350 7.268186 TGCATACACGCACGTATATATTTAC 57.732 36.000 0.00 0.00 36.86 2.01
350 351 6.862090 TGCATACACGCACGTATATATTTACA 59.138 34.615 0.00 0.00 36.86 2.41
351 352 7.381678 TGCATACACGCACGTATATATTTACAA 59.618 33.333 0.00 0.00 36.86 2.41
352 353 8.377681 GCATACACGCACGTATATATTTACAAT 58.622 33.333 0.00 0.00 30.83 2.71
353 354 9.670180 CATACACGCACGTATATATTTACAATG 57.330 33.333 0.00 3.23 30.83 2.82
354 355 7.933728 ACACGCACGTATATATTTACAATGA 57.066 32.000 0.00 0.00 0.00 2.57
355 356 8.003508 ACACGCACGTATATATTTACAATGAG 57.996 34.615 0.00 5.78 0.00 2.90
356 357 6.948228 CACGCACGTATATATTTACAATGAGC 59.052 38.462 0.00 0.00 0.00 4.26
357 358 6.643360 ACGCACGTATATATTTACAATGAGCA 59.357 34.615 0.00 0.00 0.00 4.26
358 359 7.148804 ACGCACGTATATATTTACAATGAGCAG 60.149 37.037 0.00 0.00 0.00 4.24
359 360 6.955963 GCACGTATATATTTACAATGAGCAGC 59.044 38.462 4.52 0.00 0.00 5.25
360 361 7.456253 CACGTATATATTTACAATGAGCAGCC 58.544 38.462 4.52 0.00 0.00 4.85
361 362 6.594159 ACGTATATATTTACAATGAGCAGCCC 59.406 38.462 4.52 0.00 0.00 5.19
362 363 6.593770 CGTATATATTTACAATGAGCAGCCCA 59.406 38.462 4.52 0.00 0.00 5.36
363 364 6.824305 ATATATTTACAATGAGCAGCCCAC 57.176 37.500 0.00 0.00 0.00 4.61
364 365 1.164411 TTTACAATGAGCAGCCCACG 58.836 50.000 0.00 0.00 0.00 4.94
365 366 0.676466 TTACAATGAGCAGCCCACGG 60.676 55.000 0.00 0.00 0.00 4.94
375 376 3.537874 GCCCACGGCCTCGACTAT 61.538 66.667 0.00 0.00 44.06 2.12
376 377 2.198287 GCCCACGGCCTCGACTATA 61.198 63.158 0.00 0.00 44.06 1.31
377 378 1.658673 CCCACGGCCTCGACTATAC 59.341 63.158 0.00 0.00 40.11 1.47
378 379 1.105167 CCCACGGCCTCGACTATACA 61.105 60.000 0.00 0.00 40.11 2.29
379 380 0.959553 CCACGGCCTCGACTATACAT 59.040 55.000 0.00 0.00 40.11 2.29
380 381 1.335964 CCACGGCCTCGACTATACATG 60.336 57.143 0.00 0.00 40.11 3.21
381 382 1.607148 CACGGCCTCGACTATACATGA 59.393 52.381 0.00 0.00 40.11 3.07
382 383 2.229062 CACGGCCTCGACTATACATGAT 59.771 50.000 0.00 0.00 40.11 2.45
383 384 3.439129 CACGGCCTCGACTATACATGATA 59.561 47.826 0.00 0.00 40.11 2.15
384 385 4.077108 ACGGCCTCGACTATACATGATAA 58.923 43.478 0.00 0.00 40.11 1.75
385 386 4.082895 ACGGCCTCGACTATACATGATAAC 60.083 45.833 0.00 0.00 40.11 1.89
386 387 4.156190 CGGCCTCGACTATACATGATAACT 59.844 45.833 0.00 0.00 39.00 2.24
387 388 5.353400 CGGCCTCGACTATACATGATAACTA 59.647 44.000 0.00 0.00 39.00 2.24
388 389 6.457122 CGGCCTCGACTATACATGATAACTAG 60.457 46.154 0.00 0.00 39.00 2.57
389 390 6.183360 GGCCTCGACTATACATGATAACTAGG 60.183 46.154 0.00 0.00 0.00 3.02
390 391 6.598457 GCCTCGACTATACATGATAACTAGGA 59.402 42.308 0.00 0.00 0.00 2.94
391 392 7.201661 GCCTCGACTATACATGATAACTAGGAG 60.202 44.444 0.00 0.00 0.00 3.69
392 393 7.281324 CCTCGACTATACATGATAACTAGGAGG 59.719 44.444 0.00 2.82 0.00 4.30
393 394 6.598457 TCGACTATACATGATAACTAGGAGGC 59.402 42.308 0.00 0.00 0.00 4.70
394 395 6.457122 CGACTATACATGATAACTAGGAGGCG 60.457 46.154 0.00 0.00 0.00 5.52
395 396 5.652891 ACTATACATGATAACTAGGAGGCGG 59.347 44.000 0.00 0.00 0.00 6.13
396 397 1.971357 ACATGATAACTAGGAGGCGGG 59.029 52.381 0.00 0.00 0.00 6.13
397 398 1.276421 CATGATAACTAGGAGGCGGGG 59.724 57.143 0.00 0.00 0.00 5.73
398 399 1.119574 TGATAACTAGGAGGCGGGGC 61.120 60.000 0.00 0.00 0.00 5.80
399 400 1.074775 ATAACTAGGAGGCGGGGCA 60.075 57.895 0.00 0.00 0.00 5.36
400 401 0.693092 ATAACTAGGAGGCGGGGCAA 60.693 55.000 0.00 0.00 0.00 4.52
401 402 1.335132 TAACTAGGAGGCGGGGCAAG 61.335 60.000 0.00 0.00 0.00 4.01
402 403 3.866582 CTAGGAGGCGGGGCAAGG 61.867 72.222 0.00 0.00 0.00 3.61
403 404 4.733725 TAGGAGGCGGGGCAAGGT 62.734 66.667 0.00 0.00 0.00 3.50
404 405 3.320411 TAGGAGGCGGGGCAAGGTA 62.320 63.158 0.00 0.00 0.00 3.08
405 406 4.176752 GGAGGCGGGGCAAGGTAG 62.177 72.222 0.00 0.00 0.00 3.18
406 407 4.176752 GAGGCGGGGCAAGGTAGG 62.177 72.222 0.00 0.00 0.00 3.18
407 408 4.733725 AGGCGGGGCAAGGTAGGA 62.734 66.667 0.00 0.00 0.00 2.94
408 409 3.723922 GGCGGGGCAAGGTAGGAA 61.724 66.667 0.00 0.00 0.00 3.36
409 410 2.353573 GCGGGGCAAGGTAGGAAA 59.646 61.111 0.00 0.00 0.00 3.13
410 411 1.076995 GCGGGGCAAGGTAGGAAAT 60.077 57.895 0.00 0.00 0.00 2.17
411 412 1.384222 GCGGGGCAAGGTAGGAAATG 61.384 60.000 0.00 0.00 0.00 2.32
412 413 0.254747 CGGGGCAAGGTAGGAAATGA 59.745 55.000 0.00 0.00 0.00 2.57
413 414 1.133792 CGGGGCAAGGTAGGAAATGAT 60.134 52.381 0.00 0.00 0.00 2.45
414 415 2.686715 CGGGGCAAGGTAGGAAATGATT 60.687 50.000 0.00 0.00 0.00 2.57
415 416 2.959030 GGGGCAAGGTAGGAAATGATTC 59.041 50.000 0.00 0.00 34.66 2.52
416 417 3.373110 GGGGCAAGGTAGGAAATGATTCT 60.373 47.826 0.00 0.00 35.79 2.40
417 418 4.141251 GGGGCAAGGTAGGAAATGATTCTA 60.141 45.833 0.00 0.00 35.79 2.10
418 419 4.822350 GGGCAAGGTAGGAAATGATTCTAC 59.178 45.833 0.00 0.00 35.79 2.59
419 420 5.437060 GGCAAGGTAGGAAATGATTCTACA 58.563 41.667 6.43 0.00 35.79 2.74
420 421 6.064717 GGCAAGGTAGGAAATGATTCTACAT 58.935 40.000 6.43 0.00 35.79 2.29
421 422 7.224297 GGCAAGGTAGGAAATGATTCTACATA 58.776 38.462 6.43 0.00 35.79 2.29
422 423 7.885399 GGCAAGGTAGGAAATGATTCTACATAT 59.115 37.037 6.43 0.00 35.79 1.78
423 424 9.944376 GCAAGGTAGGAAATGATTCTACATATA 57.056 33.333 6.43 0.00 35.79 0.86
429 430 8.484641 AGGAAATGATTCTACATATACATGCG 57.515 34.615 0.00 0.00 34.26 4.73
430 431 8.314021 AGGAAATGATTCTACATATACATGCGA 58.686 33.333 0.00 0.00 34.26 5.10
431 432 9.102757 GGAAATGATTCTACATATACATGCGAT 57.897 33.333 0.00 0.00 34.26 4.58
438 439 9.684448 ATTCTACATATACATGCGATATACTGC 57.316 33.333 0.00 0.00 35.39 4.40
439 440 7.649057 TCTACATATACATGCGATATACTGCC 58.351 38.462 0.00 0.00 35.39 4.85
440 441 6.471233 ACATATACATGCGATATACTGCCT 57.529 37.500 0.00 0.00 35.39 4.75
441 442 7.582667 ACATATACATGCGATATACTGCCTA 57.417 36.000 0.00 0.00 35.39 3.93
442 443 8.183104 ACATATACATGCGATATACTGCCTAT 57.817 34.615 0.00 0.00 35.39 2.57
443 444 9.297037 ACATATACATGCGATATACTGCCTATA 57.703 33.333 0.00 0.00 35.39 1.31
444 445 9.561270 CATATACATGCGATATACTGCCTATAC 57.439 37.037 0.00 0.00 0.00 1.47
445 446 5.914898 ACATGCGATATACTGCCTATACA 57.085 39.130 0.00 0.00 0.00 2.29
446 447 6.280855 ACATGCGATATACTGCCTATACAA 57.719 37.500 0.00 0.00 0.00 2.41
447 448 6.697395 ACATGCGATATACTGCCTATACAAA 58.303 36.000 0.00 0.00 0.00 2.83
448 449 7.158697 ACATGCGATATACTGCCTATACAAAA 58.841 34.615 0.00 0.00 0.00 2.44
449 450 7.331934 ACATGCGATATACTGCCTATACAAAAG 59.668 37.037 0.00 0.00 0.00 2.27
450 451 6.988522 TGCGATATACTGCCTATACAAAAGA 58.011 36.000 0.00 0.00 0.00 2.52
451 452 7.611770 TGCGATATACTGCCTATACAAAAGAT 58.388 34.615 0.00 0.00 0.00 2.40
452 453 8.745590 TGCGATATACTGCCTATACAAAAGATA 58.254 33.333 0.00 0.00 0.00 1.98
453 454 9.751542 GCGATATACTGCCTATACAAAAGATAT 57.248 33.333 0.00 0.00 0.00 1.63
469 470 6.737254 AAAGATATTCAACAGGTACCAACG 57.263 37.500 15.94 4.47 0.00 4.10
482 483 5.123344 CAGGTACCAACGGAATTTTTAGAGG 59.877 44.000 15.94 0.00 0.00 3.69
501 502 4.735132 GCGTAGGCGTCTGCACCA 62.735 66.667 5.82 0.00 45.35 4.17
553 554 3.631714 CCGTCTCGAGATGGTTCAG 57.368 57.895 35.93 17.06 44.32 3.02
599 603 2.033602 GGGGTTCCACTTCCACCG 59.966 66.667 0.00 0.00 0.00 4.94
607 611 2.040544 CACTTCCACCGCCACCATC 61.041 63.158 0.00 0.00 0.00 3.51
616 620 1.734477 CGCCACCATCGATCGATCC 60.734 63.158 27.20 12.15 31.62 3.36
629 633 3.258225 CGATCCATCGGTCACAGAC 57.742 57.895 0.73 0.00 45.93 3.51
630 634 0.592500 CGATCCATCGGTCACAGACG 60.593 60.000 0.73 0.00 45.93 4.18
631 635 0.872021 GATCCATCGGTCACAGACGC 60.872 60.000 0.00 0.00 32.65 5.19
651 655 1.550065 CAGACGGAATGTACTCTGCG 58.450 55.000 7.03 7.03 0.00 5.18
652 656 1.135373 CAGACGGAATGTACTCTGCGT 60.135 52.381 12.58 12.58 0.00 5.24
704 727 1.885887 AGTGAGTGAGTGAGAGTGAGC 59.114 52.381 0.00 0.00 0.00 4.26
705 728 1.885887 GTGAGTGAGTGAGAGTGAGCT 59.114 52.381 0.00 0.00 0.00 4.09
706 729 1.885233 TGAGTGAGTGAGAGTGAGCTG 59.115 52.381 0.00 0.00 0.00 4.24
707 730 2.158559 GAGTGAGTGAGAGTGAGCTGA 58.841 52.381 0.00 0.00 0.00 4.26
708 731 2.161855 AGTGAGTGAGAGTGAGCTGAG 58.838 52.381 0.00 0.00 0.00 3.35
709 732 0.887247 TGAGTGAGAGTGAGCTGAGC 59.113 55.000 0.00 0.00 0.00 4.26
767 831 3.254617 GAAGGGTTGGGGTCGGGT 61.255 66.667 0.00 0.00 0.00 5.28
769 833 3.141421 AAGGGTTGGGGTCGGGTTG 62.141 63.158 0.00 0.00 0.00 3.77
823 898 2.365370 AGCTGAGCTGAGGAGGGG 60.365 66.667 5.97 0.00 37.57 4.79
824 899 3.478274 GCTGAGCTGAGGAGGGGG 61.478 72.222 1.31 0.00 0.00 5.40
982 1086 0.105593 CTGTCCACTCCATCCATCCG 59.894 60.000 0.00 0.00 0.00 4.18
983 1087 0.617535 TGTCCACTCCATCCATCCGT 60.618 55.000 0.00 0.00 0.00 4.69
984 1088 0.105039 GTCCACTCCATCCATCCGTC 59.895 60.000 0.00 0.00 0.00 4.79
1012 1134 0.179094 CCCGCCTGCATTTACGTCTA 60.179 55.000 0.00 0.00 0.00 2.59
1043 1165 3.550431 GGCGGCAGGGCTGATCTA 61.550 66.667 3.07 0.00 37.02 1.98
1275 1428 1.682684 GAAGGAGGAGGCCGAGTCA 60.683 63.158 0.00 0.00 0.00 3.41
1276 1429 1.229209 AAGGAGGAGGCCGAGTCAA 60.229 57.895 0.00 0.00 0.00 3.18
1279 1432 1.682684 GAGGAGGCCGAGTCAAGGA 60.683 63.158 0.00 0.00 0.00 3.36
1311 1464 4.988598 AAGTGCGTGGAGGCGGTG 62.989 66.667 0.00 0.00 35.06 4.94
1441 1594 6.418819 CACATTCTTTCAATCGTTTGCTTCTT 59.581 34.615 1.18 0.00 32.61 2.52
1495 1656 3.458044 ACATTTCTTCCCCCTTTCTCC 57.542 47.619 0.00 0.00 0.00 3.71
1528 1693 0.689623 CTCCATCCATCCCAGCCTAC 59.310 60.000 0.00 0.00 0.00 3.18
1560 1725 3.124466 GCCGCTTCTTCTTCTTCTTCTTC 59.876 47.826 0.00 0.00 0.00 2.87
1561 1726 4.565022 CCGCTTCTTCTTCTTCTTCTTCT 58.435 43.478 0.00 0.00 0.00 2.85
1563 1728 5.120053 CCGCTTCTTCTTCTTCTTCTTCTTC 59.880 44.000 0.00 0.00 0.00 2.87
1564 1729 5.925969 CGCTTCTTCTTCTTCTTCTTCTTCT 59.074 40.000 0.00 0.00 0.00 2.85
1565 1730 6.423604 CGCTTCTTCTTCTTCTTCTTCTTCTT 59.576 38.462 0.00 0.00 0.00 2.52
1566 1731 7.359181 CGCTTCTTCTTCTTCTTCTTCTTCTTC 60.359 40.741 0.00 0.00 0.00 2.87
1567 1732 7.657354 GCTTCTTCTTCTTCTTCTTCTTCTTCT 59.343 37.037 0.00 0.00 0.00 2.85
1568 1733 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1569 1734 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1570 1735 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1571 1736 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1572 1737 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1573 1738 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1574 1739 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1575 1740 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1576 1741 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1577 1742 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1578 1743 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1579 1744 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1580 1745 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1581 1746 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1582 1747 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1583 1748 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1584 1749 8.885494 TCTTCTTCTTCTTCTTCTTCTTCTTG 57.115 34.615 0.00 0.00 0.00 3.02
1585 1750 8.482128 TCTTCTTCTTCTTCTTCTTCTTCTTGT 58.518 33.333 0.00 0.00 0.00 3.16
1586 1751 9.108284 CTTCTTCTTCTTCTTCTTCTTCTTGTT 57.892 33.333 0.00 0.00 0.00 2.83
1587 1752 8.430801 TCTTCTTCTTCTTCTTCTTCTTGTTG 57.569 34.615 0.00 0.00 0.00 3.33
1641 1806 3.277133 CCCACTGCGAATTGGGTG 58.723 61.111 10.82 0.00 46.74 4.61
1675 1841 3.434319 CATGAGCGCCACCACCAC 61.434 66.667 2.29 0.00 0.00 4.16
1682 1848 4.514585 GCCACCACCACCACCACA 62.515 66.667 0.00 0.00 0.00 4.17
1683 1849 2.277072 CCACCACCACCACCACAA 59.723 61.111 0.00 0.00 0.00 3.33
1684 1850 1.827789 CCACCACCACCACCACAAG 60.828 63.158 0.00 0.00 0.00 3.16
1685 1851 1.827789 CACCACCACCACCACAAGG 60.828 63.158 0.00 0.00 42.21 3.61
1717 1887 0.665835 CTAGCTAGCAGTCCCGTCAG 59.334 60.000 18.83 0.00 0.00 3.51
1719 1889 1.034838 AGCTAGCAGTCCCGTCAGAG 61.035 60.000 18.83 0.00 0.00 3.35
1783 1969 5.135508 TGCTCTGTTGTTTCCTAGTACTC 57.864 43.478 0.00 0.00 0.00 2.59
1786 1972 5.279556 GCTCTGTTGTTTCCTAGTACTCCTT 60.280 44.000 0.00 0.00 0.00 3.36
1787 1973 6.342338 TCTGTTGTTTCCTAGTACTCCTTC 57.658 41.667 0.00 0.00 0.00 3.46
1788 1974 5.245526 TCTGTTGTTTCCTAGTACTCCTTCC 59.754 44.000 0.00 0.00 0.00 3.46
1825 2011 5.415389 TGTGCAGCTAGCTTCATTTCAATTA 59.585 36.000 20.04 0.00 45.94 1.40
1826 2012 6.095860 TGTGCAGCTAGCTTCATTTCAATTAT 59.904 34.615 20.04 0.00 45.94 1.28
1850 2036 3.383698 TCTGTCCTAGTTCCTACCTGG 57.616 52.381 0.00 0.00 37.10 4.45
1853 2039 1.481363 GTCCTAGTTCCTACCTGGTGC 59.519 57.143 10.23 0.00 37.07 5.01
1874 2060 4.883585 TGCTTTGATTTTGAGTGAGTGAGT 59.116 37.500 0.00 0.00 0.00 3.41
1879 2065 2.533266 TTTGAGTGAGTGAGTGAGGC 57.467 50.000 0.00 0.00 0.00 4.70
1881 2067 1.188219 TGAGTGAGTGAGTGAGGCCC 61.188 60.000 0.00 0.00 0.00 5.80
1882 2068 1.893919 GAGTGAGTGAGTGAGGCCCC 61.894 65.000 0.00 0.00 0.00 5.80
1884 2070 1.152030 TGAGTGAGTGAGGCCCCTT 60.152 57.895 0.00 0.00 0.00 3.95
1886 2072 1.152030 AGTGAGTGAGGCCCCTTGA 60.152 57.895 0.00 0.00 0.00 3.02
1913 2099 5.396484 AGAACAAACATGCAAGATCAATCG 58.604 37.500 0.00 0.00 0.00 3.34
1917 2103 3.620929 ACATGCAAGATCAATCGATGC 57.379 42.857 0.00 13.51 41.61 3.91
1918 2104 3.211865 ACATGCAAGATCAATCGATGCT 58.788 40.909 18.24 0.00 41.71 3.79
1923 2112 4.033684 GCAAGATCAATCGATGCTGTTTC 58.966 43.478 0.00 0.00 39.65 2.78
1924 2113 4.437794 GCAAGATCAATCGATGCTGTTTCA 60.438 41.667 0.00 0.00 39.65 2.69
1929 2118 4.650985 TCAATCGATGCTGTTTCATTTCG 58.349 39.130 0.00 0.00 0.00 3.46
1935 2124 5.407084 TCGATGCTGTTTCATTTCGTCTTTA 59.593 36.000 0.00 0.00 0.00 1.85
1937 2126 5.743026 TGCTGTTTCATTTCGTCTTTACA 57.257 34.783 0.00 0.00 0.00 2.41
1938 2127 5.507077 TGCTGTTTCATTTCGTCTTTACAC 58.493 37.500 0.00 0.00 0.00 2.90
1939 2128 5.295787 TGCTGTTTCATTTCGTCTTTACACT 59.704 36.000 0.00 0.00 0.00 3.55
1942 2131 6.711579 TGTTTCATTTCGTCTTTACACTGTC 58.288 36.000 0.00 0.00 0.00 3.51
1943 2132 6.537301 TGTTTCATTTCGTCTTTACACTGTCT 59.463 34.615 0.00 0.00 0.00 3.41
1945 2134 7.633361 TTCATTTCGTCTTTACACTGTCTAC 57.367 36.000 0.00 0.00 0.00 2.59
1952 2141 7.310664 TCGTCTTTACACTGTCTACTAATTGG 58.689 38.462 0.00 0.00 0.00 3.16
1963 2152 5.072600 TGTCTACTAATTGGTGGTCCTTGTT 59.927 40.000 4.47 0.00 34.23 2.83
1964 2153 6.270463 TGTCTACTAATTGGTGGTCCTTGTTA 59.730 38.462 4.47 0.00 34.23 2.41
1966 2155 5.313280 ACTAATTGGTGGTCCTTGTTACA 57.687 39.130 0.00 0.00 34.23 2.41
1972 2161 3.712733 TGGTGGTCCTTGTTACAAGTACT 59.287 43.478 21.63 0.00 34.23 2.73
1974 2163 5.544948 TGGTGGTCCTTGTTACAAGTACTAT 59.455 40.000 21.63 0.00 34.23 2.12
1980 2169 9.880157 GGTCCTTGTTACAAGTACTATCAATTA 57.120 33.333 21.63 0.00 0.00 1.40
1989 2178 8.354011 ACAAGTACTATCAATTATCTCGTTGC 57.646 34.615 0.00 0.00 0.00 4.17
1995 2184 3.258228 TCAATTATCTCGTTGCTTGCGA 58.742 40.909 0.00 0.00 36.85 5.10
1997 2186 4.025730 TCAATTATCTCGTTGCTTGCGATC 60.026 41.667 0.00 0.00 37.74 3.69
2003 2192 1.539388 TCGTTGCTTGCGATCCAAATT 59.461 42.857 0.00 0.00 33.09 1.82
2004 2193 1.650153 CGTTGCTTGCGATCCAAATTG 59.350 47.619 0.00 0.00 31.94 2.32
2005 2194 2.676076 GTTGCTTGCGATCCAAATTGT 58.324 42.857 0.00 0.00 31.94 2.71
2006 2195 3.059166 GTTGCTTGCGATCCAAATTGTT 58.941 40.909 0.00 0.00 31.94 2.83
2007 2196 2.674954 TGCTTGCGATCCAAATTGTTG 58.325 42.857 0.00 0.00 31.94 3.33
2008 2197 2.295629 TGCTTGCGATCCAAATTGTTGA 59.704 40.909 0.00 0.00 36.83 3.18
2010 2199 2.634982 TGCGATCCAAATTGTTGAGC 57.365 45.000 0.00 0.00 36.83 4.26
2011 2200 2.161855 TGCGATCCAAATTGTTGAGCT 58.838 42.857 0.00 0.00 36.83 4.09
2012 2201 3.342719 TGCGATCCAAATTGTTGAGCTA 58.657 40.909 0.00 0.00 36.83 3.32
2013 2202 3.755905 TGCGATCCAAATTGTTGAGCTAA 59.244 39.130 0.00 0.00 36.83 3.09
2014 2203 4.098416 GCGATCCAAATTGTTGAGCTAAC 58.902 43.478 0.00 0.00 36.83 2.34
2015 2204 4.142600 GCGATCCAAATTGTTGAGCTAACT 60.143 41.667 0.00 0.00 40.05 2.24
2016 2205 5.064707 GCGATCCAAATTGTTGAGCTAACTA 59.935 40.000 0.00 0.00 40.05 2.24
2017 2206 6.709643 CGATCCAAATTGTTGAGCTAACTAG 58.290 40.000 0.00 0.00 40.05 2.57
2018 2207 5.880054 TCCAAATTGTTGAGCTAACTAGC 57.120 39.130 0.17 0.17 40.05 3.42
2026 2215 4.020128 GCTAACTAGCTGGCTCGC 57.980 61.111 0.00 0.00 45.62 5.03
2080 2273 3.481903 CGCACGCACGCAGAGATT 61.482 61.111 0.00 0.00 0.00 2.40
2081 2274 2.097160 GCACGCACGCAGAGATTG 59.903 61.111 0.00 0.00 0.00 2.67
2082 2275 2.382746 GCACGCACGCAGAGATTGA 61.383 57.895 0.00 0.00 0.00 2.57
2169 2373 3.515286 GGCCGGTCGTCGATCTGA 61.515 66.667 1.90 0.00 42.43 3.27
2172 2376 2.022520 CCGGTCGTCGATCTGATGA 58.977 57.895 3.63 5.67 42.43 2.92
2187 2391 4.906618 TCTGATGATGATGATGATGGTGG 58.093 43.478 0.00 0.00 0.00 4.61
2190 2394 3.217681 TGATGATGATGATGGTGGTGG 57.782 47.619 0.00 0.00 0.00 4.61
2193 2397 1.064537 TGATGATGATGGTGGTGGTGG 60.065 52.381 0.00 0.00 0.00 4.61
2197 2401 1.434513 ATGATGGTGGTGGTGGTGGT 61.435 55.000 0.00 0.00 0.00 4.16
2574 2795 5.803020 AGACCAAATGTTCGCTTAATCTC 57.197 39.130 0.00 0.00 0.00 2.75
2575 2796 4.636206 AGACCAAATGTTCGCTTAATCTCC 59.364 41.667 0.00 0.00 0.00 3.71
2627 2890 4.201679 CCATGCACCGCTGCCATG 62.202 66.667 0.00 8.93 43.51 3.66
2628 2891 4.865761 CATGCACCGCTGCCATGC 62.866 66.667 14.08 14.08 43.51 4.06
2649 2912 1.063341 AGATGCAGGGCTCACTCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
2650 2913 1.759445 GATGCAGGGCTCACTCTAGAA 59.241 52.381 0.00 0.00 0.00 2.10
2652 2915 1.483827 TGCAGGGCTCACTCTAGAATG 59.516 52.381 0.00 0.00 0.00 2.67
2685 2949 5.752712 AGAAAGAAAGAAGATTCAACGCAC 58.247 37.500 0.00 0.00 0.00 5.34
2697 2961 5.699001 AGATTCAACGCACTGTGTTTGTATA 59.301 36.000 17.91 9.63 33.78 1.47
2698 2962 5.933187 TTCAACGCACTGTGTTTGTATAT 57.067 34.783 17.91 0.00 33.78 0.86
2699 2963 5.524511 TCAACGCACTGTGTTTGTATATC 57.475 39.130 17.91 0.00 33.78 1.63
2700 2964 4.390603 TCAACGCACTGTGTTTGTATATCC 59.609 41.667 17.91 0.00 33.78 2.59
2701 2965 4.202245 ACGCACTGTGTTTGTATATCCT 57.798 40.909 9.86 0.00 0.00 3.24
2706 2970 6.523201 CGCACTGTGTTTGTATATCCTTTTTC 59.477 38.462 9.86 0.00 0.00 2.29
2749 3017 5.938125 AGGTTTGTTACTGCATGGTAAGTAG 59.062 40.000 0.00 0.00 33.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.899437 ATCTTGACATCCACCGCCGT 61.899 55.000 0.00 0.00 0.00 5.68
1 2 1.153369 ATCTTGACATCCACCGCCG 60.153 57.895 0.00 0.00 0.00 6.46
2 3 0.107703 TGATCTTGACATCCACCGCC 60.108 55.000 0.00 0.00 0.00 6.13
3 4 1.009829 GTGATCTTGACATCCACCGC 58.990 55.000 0.00 0.00 0.00 5.68
4 5 1.280982 CGTGATCTTGACATCCACCG 58.719 55.000 0.00 0.00 0.00 4.94
5 6 1.207089 TCCGTGATCTTGACATCCACC 59.793 52.381 0.00 0.00 0.00 4.61
6 7 2.672961 TCCGTGATCTTGACATCCAC 57.327 50.000 0.00 0.00 0.00 4.02
7 8 2.765699 TCATCCGTGATCTTGACATCCA 59.234 45.455 0.00 0.00 0.00 3.41
8 9 3.388308 CTCATCCGTGATCTTGACATCC 58.612 50.000 0.00 0.00 32.98 3.51
9 10 2.799412 GCTCATCCGTGATCTTGACATC 59.201 50.000 0.00 0.00 32.98 3.06
10 11 2.169144 TGCTCATCCGTGATCTTGACAT 59.831 45.455 0.00 0.00 32.98 3.06
11 12 1.550072 TGCTCATCCGTGATCTTGACA 59.450 47.619 0.00 0.00 32.98 3.58
12 13 1.929836 GTGCTCATCCGTGATCTTGAC 59.070 52.381 0.00 0.00 32.98 3.18
13 14 1.469767 CGTGCTCATCCGTGATCTTGA 60.470 52.381 0.00 0.00 32.98 3.02
14 15 0.926155 CGTGCTCATCCGTGATCTTG 59.074 55.000 0.00 0.00 32.98 3.02
15 16 0.179100 CCGTGCTCATCCGTGATCTT 60.179 55.000 0.00 0.00 32.98 2.40
16 17 1.439228 CCGTGCTCATCCGTGATCT 59.561 57.895 0.00 0.00 32.98 2.75
17 18 1.592669 CCCGTGCTCATCCGTGATC 60.593 63.158 0.00 0.00 32.98 2.92
18 19 1.402896 ATCCCGTGCTCATCCGTGAT 61.403 55.000 0.00 0.00 32.98 3.06
19 20 2.016393 GATCCCGTGCTCATCCGTGA 62.016 60.000 0.00 0.00 0.00 4.35
20 21 1.592669 GATCCCGTGCTCATCCGTG 60.593 63.158 0.00 0.00 0.00 4.94
21 22 2.815308 GATCCCGTGCTCATCCGT 59.185 61.111 0.00 0.00 0.00 4.69
22 23 2.355126 CGATCCCGTGCTCATCCG 60.355 66.667 0.00 0.00 0.00 4.18
23 24 2.029666 CCGATCCCGTGCTCATCC 59.970 66.667 0.00 0.00 0.00 3.51
24 25 2.029666 CCCGATCCCGTGCTCATC 59.970 66.667 0.00 0.00 0.00 2.92
25 26 3.550431 CCCCGATCCCGTGCTCAT 61.550 66.667 0.00 0.00 0.00 2.90
34 35 4.918201 CTTCGCTGGCCCCGATCC 62.918 72.222 15.20 0.00 34.35 3.36
35 36 4.918201 CCTTCGCTGGCCCCGATC 62.918 72.222 15.20 0.00 34.35 3.69
43 44 4.740822 CCCCAACCCCTTCGCTGG 62.741 72.222 0.00 0.00 0.00 4.85
44 45 3.646715 TCCCCAACCCCTTCGCTG 61.647 66.667 0.00 0.00 0.00 5.18
45 46 3.647771 GTCCCCAACCCCTTCGCT 61.648 66.667 0.00 0.00 0.00 4.93
47 48 3.315949 TCGTCCCCAACCCCTTCG 61.316 66.667 0.00 0.00 0.00 3.79
48 49 2.350134 GTCGTCCCCAACCCCTTC 59.650 66.667 0.00 0.00 0.00 3.46
49 50 3.633116 CGTCGTCCCCAACCCCTT 61.633 66.667 0.00 0.00 0.00 3.95
52 53 3.628982 TTCCGTCGTCCCCAACCC 61.629 66.667 0.00 0.00 0.00 4.11
53 54 2.357881 GTTCCGTCGTCCCCAACC 60.358 66.667 0.00 0.00 0.00 3.77
54 55 2.357881 GGTTCCGTCGTCCCCAAC 60.358 66.667 0.00 0.00 0.00 3.77
55 56 3.993584 CGGTTCCGTCGTCCCCAA 61.994 66.667 2.82 0.00 0.00 4.12
58 59 3.455469 ATCCGGTTCCGTCGTCCC 61.455 66.667 0.00 0.00 0.00 4.46
59 60 2.202703 CATCCGGTTCCGTCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
60 61 2.884207 GCATCCGGTTCCGTCGTC 60.884 66.667 0.00 0.00 0.00 4.20
61 62 4.789075 CGCATCCGGTTCCGTCGT 62.789 66.667 0.00 0.00 0.00 4.34
87 88 4.195334 ATCGCCATGGCCTCACCC 62.195 66.667 30.79 1.84 37.83 4.61
88 89 2.903855 CATCGCCATGGCCTCACC 60.904 66.667 30.79 2.65 37.98 4.02
89 90 2.124570 ACATCGCCATGGCCTCAC 60.125 61.111 30.79 3.46 37.98 3.51
90 91 2.190313 GACATCGCCATGGCCTCA 59.810 61.111 30.79 15.44 37.98 3.86
91 92 2.969238 CGACATCGCCATGGCCTC 60.969 66.667 30.79 17.78 33.90 4.70
92 93 4.552365 CCGACATCGCCATGGCCT 62.552 66.667 30.79 15.87 33.90 5.19
94 95 4.856801 ACCCGACATCGCCATGGC 62.857 66.667 27.67 27.67 38.18 4.40
95 96 2.896854 CACCCGACATCGCCATGG 60.897 66.667 7.63 7.63 38.18 3.66
96 97 2.896854 CCACCCGACATCGCCATG 60.897 66.667 0.00 0.00 38.18 3.66
97 98 4.175337 CCCACCCGACATCGCCAT 62.175 66.667 0.00 0.00 38.18 4.40
99 100 4.530857 CTCCCACCCGACATCGCC 62.531 72.222 0.00 0.00 38.18 5.54
100 101 3.432051 CTCTCCCACCCGACATCGC 62.432 68.421 0.00 0.00 38.18 4.58
101 102 2.786495 CCTCTCCCACCCGACATCG 61.786 68.421 0.00 0.00 39.44 3.84
102 103 2.435693 CCCTCTCCCACCCGACATC 61.436 68.421 0.00 0.00 0.00 3.06
103 104 2.365635 CCCTCTCCCACCCGACAT 60.366 66.667 0.00 0.00 0.00 3.06
104 105 3.168759 TTCCCTCTCCCACCCGACA 62.169 63.158 0.00 0.00 0.00 4.35
105 106 2.284405 TTCCCTCTCCCACCCGAC 60.284 66.667 0.00 0.00 0.00 4.79
106 107 2.038975 CTTCCCTCTCCCACCCGA 59.961 66.667 0.00 0.00 0.00 5.14
107 108 3.083997 CCTTCCCTCTCCCACCCG 61.084 72.222 0.00 0.00 0.00 5.28
108 109 2.125225 ACCTTCCCTCTCCCACCC 59.875 66.667 0.00 0.00 0.00 4.61
109 110 2.301738 CCACCTTCCCTCTCCCACC 61.302 68.421 0.00 0.00 0.00 4.61
110 111 1.539124 ACCACCTTCCCTCTCCCAC 60.539 63.158 0.00 0.00 0.00 4.61
111 112 1.538876 CACCACCTTCCCTCTCCCA 60.539 63.158 0.00 0.00 0.00 4.37
112 113 2.301738 CCACCACCTTCCCTCTCCC 61.302 68.421 0.00 0.00 0.00 4.30
113 114 1.539124 ACCACCACCTTCCCTCTCC 60.539 63.158 0.00 0.00 0.00 3.71
114 115 1.679898 CACCACCACCTTCCCTCTC 59.320 63.158 0.00 0.00 0.00 3.20
115 116 2.529744 GCACCACCACCTTCCCTCT 61.530 63.158 0.00 0.00 0.00 3.69
116 117 2.034221 GCACCACCACCTTCCCTC 59.966 66.667 0.00 0.00 0.00 4.30
117 118 3.953775 CGCACCACCACCTTCCCT 61.954 66.667 0.00 0.00 0.00 4.20
120 121 4.643387 AGCCGCACCACCACCTTC 62.643 66.667 0.00 0.00 0.00 3.46
121 122 4.954970 CAGCCGCACCACCACCTT 62.955 66.667 0.00 0.00 0.00 3.50
130 131 4.785453 CTTCCCCTCCAGCCGCAC 62.785 72.222 0.00 0.00 0.00 5.34
133 134 4.479993 CTGCTTCCCCTCCAGCCG 62.480 72.222 0.00 0.00 34.91 5.52
134 135 4.811364 GCTGCTTCCCCTCCAGCC 62.811 72.222 0.62 0.00 44.60 4.85
136 137 4.479993 CCGCTGCTTCCCCTCCAG 62.480 72.222 0.00 0.00 0.00 3.86
144 145 3.612247 TTCTCCCTGCCGCTGCTTC 62.612 63.158 0.70 0.00 38.71 3.86
145 146 3.618780 CTTCTCCCTGCCGCTGCTT 62.619 63.158 0.70 0.00 38.71 3.91
146 147 4.093291 CTTCTCCCTGCCGCTGCT 62.093 66.667 0.70 0.00 38.71 4.24
147 148 3.612247 TTCTTCTCCCTGCCGCTGC 62.612 63.158 0.00 0.00 38.26 5.25
148 149 1.449246 CTTCTTCTCCCTGCCGCTG 60.449 63.158 0.00 0.00 0.00 5.18
149 150 2.985456 CTTCTTCTCCCTGCCGCT 59.015 61.111 0.00 0.00 0.00 5.52
150 151 2.821810 GCTTCTTCTCCCTGCCGC 60.822 66.667 0.00 0.00 0.00 6.53
151 152 2.510238 CGCTTCTTCTCCCTGCCG 60.510 66.667 0.00 0.00 0.00 5.69
152 153 2.124942 CCGCTTCTTCTCCCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
153 154 2.821810 GCCGCTTCTTCTCCCTGC 60.822 66.667 0.00 0.00 0.00 4.85
154 155 2.510238 CGCCGCTTCTTCTCCCTG 60.510 66.667 0.00 0.00 0.00 4.45
155 156 3.775654 CCGCCGCTTCTTCTCCCT 61.776 66.667 0.00 0.00 0.00 4.20
235 236 4.774503 AGCTTCCGCTCCTGCTGC 62.775 66.667 0.00 0.00 45.15 5.25
236 237 2.818714 CAGCTTCCGCTCCTGCTG 60.819 66.667 0.00 0.00 45.15 4.41
237 238 2.403132 AAACAGCTTCCGCTCCTGCT 62.403 55.000 0.00 0.00 45.15 4.24
238 239 0.673644 TAAACAGCTTCCGCTCCTGC 60.674 55.000 0.00 0.00 45.15 4.85
239 240 1.363744 CTAAACAGCTTCCGCTCCTG 58.636 55.000 0.00 0.00 45.15 3.86
240 241 0.250513 CCTAAACAGCTTCCGCTCCT 59.749 55.000 0.00 0.00 45.15 3.69
241 242 0.249398 TCCTAAACAGCTTCCGCTCC 59.751 55.000 0.00 0.00 45.15 4.70
242 243 2.003301 CTTCCTAAACAGCTTCCGCTC 58.997 52.381 0.00 0.00 45.15 5.03
244 245 2.003301 CTCTTCCTAAACAGCTTCCGC 58.997 52.381 0.00 0.00 0.00 5.54
245 246 2.233922 TCCTCTTCCTAAACAGCTTCCG 59.766 50.000 0.00 0.00 0.00 4.30
246 247 3.983044 TCCTCTTCCTAAACAGCTTCC 57.017 47.619 0.00 0.00 0.00 3.46
247 248 4.116238 CGATCCTCTTCCTAAACAGCTTC 58.884 47.826 0.00 0.00 0.00 3.86
248 249 3.515901 ACGATCCTCTTCCTAAACAGCTT 59.484 43.478 0.00 0.00 0.00 3.74
249 250 3.100671 ACGATCCTCTTCCTAAACAGCT 58.899 45.455 0.00 0.00 0.00 4.24
250 251 3.190874 CACGATCCTCTTCCTAAACAGC 58.809 50.000 0.00 0.00 0.00 4.40
251 252 4.082190 TCACACGATCCTCTTCCTAAACAG 60.082 45.833 0.00 0.00 0.00 3.16
252 253 3.830178 TCACACGATCCTCTTCCTAAACA 59.170 43.478 0.00 0.00 0.00 2.83
253 254 4.425520 CTCACACGATCCTCTTCCTAAAC 58.574 47.826 0.00 0.00 0.00 2.01
254 255 3.447586 CCTCACACGATCCTCTTCCTAAA 59.552 47.826 0.00 0.00 0.00 1.85
255 256 3.024547 CCTCACACGATCCTCTTCCTAA 58.975 50.000 0.00 0.00 0.00 2.69
256 257 2.241430 TCCTCACACGATCCTCTTCCTA 59.759 50.000 0.00 0.00 0.00 2.94
257 258 1.006043 TCCTCACACGATCCTCTTCCT 59.994 52.381 0.00 0.00 0.00 3.36
258 259 1.475403 TCCTCACACGATCCTCTTCC 58.525 55.000 0.00 0.00 0.00 3.46
259 260 3.594603 TTTCCTCACACGATCCTCTTC 57.405 47.619 0.00 0.00 0.00 2.87
260 261 3.325135 AGTTTTCCTCACACGATCCTCTT 59.675 43.478 0.00 0.00 0.00 2.85
261 262 2.900546 AGTTTTCCTCACACGATCCTCT 59.099 45.455 0.00 0.00 0.00 3.69
262 263 2.996621 CAGTTTTCCTCACACGATCCTC 59.003 50.000 0.00 0.00 0.00 3.71
263 264 2.632996 TCAGTTTTCCTCACACGATCCT 59.367 45.455 0.00 0.00 0.00 3.24
264 265 3.040147 TCAGTTTTCCTCACACGATCC 57.960 47.619 0.00 0.00 0.00 3.36
265 266 4.567159 GGTATCAGTTTTCCTCACACGATC 59.433 45.833 0.00 0.00 0.00 3.69
266 267 4.020573 TGGTATCAGTTTTCCTCACACGAT 60.021 41.667 0.00 0.00 0.00 3.73
267 268 3.322541 TGGTATCAGTTTTCCTCACACGA 59.677 43.478 0.00 0.00 0.00 4.35
268 269 3.659786 TGGTATCAGTTTTCCTCACACG 58.340 45.455 0.00 0.00 0.00 4.49
269 270 7.336931 ACAATATGGTATCAGTTTTCCTCACAC 59.663 37.037 0.00 0.00 0.00 3.82
270 271 7.402054 ACAATATGGTATCAGTTTTCCTCACA 58.598 34.615 0.00 0.00 0.00 3.58
271 272 7.865706 ACAATATGGTATCAGTTTTCCTCAC 57.134 36.000 0.00 0.00 0.00 3.51
272 273 8.739039 CAAACAATATGGTATCAGTTTTCCTCA 58.261 33.333 0.00 0.00 0.00 3.86
273 274 8.190784 CCAAACAATATGGTATCAGTTTTCCTC 58.809 37.037 0.00 0.00 33.08 3.71
274 275 7.363793 GCCAAACAATATGGTATCAGTTTTCCT 60.364 37.037 0.00 0.00 40.23 3.36
275 276 6.756542 GCCAAACAATATGGTATCAGTTTTCC 59.243 38.462 0.00 0.00 40.23 3.13
276 277 7.319646 TGCCAAACAATATGGTATCAGTTTTC 58.680 34.615 0.00 0.00 40.23 2.29
277 278 7.238486 TGCCAAACAATATGGTATCAGTTTT 57.762 32.000 0.00 0.00 40.23 2.43
278 279 6.849085 TGCCAAACAATATGGTATCAGTTT 57.151 33.333 0.00 0.00 40.23 2.66
279 280 6.849085 TTGCCAAACAATATGGTATCAGTT 57.151 33.333 0.00 0.00 40.23 3.16
292 293 1.266718 GAGAGTCGCATTGCCAAACAA 59.733 47.619 2.41 0.00 44.01 2.83
293 294 0.874390 GAGAGTCGCATTGCCAAACA 59.126 50.000 2.41 0.00 0.00 2.83
294 295 0.874390 TGAGAGTCGCATTGCCAAAC 59.126 50.000 2.41 0.00 0.00 2.93
295 296 1.603456 TTGAGAGTCGCATTGCCAAA 58.397 45.000 2.41 0.00 0.00 3.28
296 297 1.825090 ATTGAGAGTCGCATTGCCAA 58.175 45.000 2.41 0.72 0.00 4.52
297 298 1.469703 CAATTGAGAGTCGCATTGCCA 59.530 47.619 0.00 0.00 0.00 4.92
298 299 1.739466 TCAATTGAGAGTCGCATTGCC 59.261 47.619 3.38 0.00 0.00 4.52
299 300 3.687572 ATCAATTGAGAGTCGCATTGC 57.312 42.857 14.54 0.00 0.00 3.56
300 301 4.796830 CCAAATCAATTGAGAGTCGCATTG 59.203 41.667 14.54 5.27 41.85 2.82
301 302 4.142315 CCCAAATCAATTGAGAGTCGCATT 60.142 41.667 14.54 0.00 41.85 3.56
302 303 3.379372 CCCAAATCAATTGAGAGTCGCAT 59.621 43.478 14.54 0.00 41.85 4.73
303 304 2.749076 CCCAAATCAATTGAGAGTCGCA 59.251 45.455 14.54 0.00 41.85 5.10
304 305 2.749621 ACCCAAATCAATTGAGAGTCGC 59.250 45.455 14.54 0.00 41.85 5.19
305 306 3.426695 GCACCCAAATCAATTGAGAGTCG 60.427 47.826 14.54 3.95 41.85 4.18
306 307 3.507233 TGCACCCAAATCAATTGAGAGTC 59.493 43.478 14.54 0.00 41.85 3.36
307 308 3.499338 TGCACCCAAATCAATTGAGAGT 58.501 40.909 14.54 3.84 41.85 3.24
308 309 4.730949 ATGCACCCAAATCAATTGAGAG 57.269 40.909 14.54 6.00 41.85 3.20
309 310 5.015515 TGTATGCACCCAAATCAATTGAGA 58.984 37.500 14.54 0.00 41.85 3.27
310 311 5.104374 GTGTATGCACCCAAATCAATTGAG 58.896 41.667 14.54 2.20 39.25 3.02
311 312 4.380339 CGTGTATGCACCCAAATCAATTGA 60.380 41.667 11.26 11.26 40.72 2.57
312 313 3.858812 CGTGTATGCACCCAAATCAATTG 59.141 43.478 8.45 0.00 42.39 2.32
313 314 3.675775 GCGTGTATGCACCCAAATCAATT 60.676 43.478 8.45 0.00 42.39 2.32
314 315 2.159254 GCGTGTATGCACCCAAATCAAT 60.159 45.455 8.45 0.00 42.39 2.57
315 316 1.201181 GCGTGTATGCACCCAAATCAA 59.799 47.619 8.45 0.00 42.39 2.57
316 317 0.808125 GCGTGTATGCACCCAAATCA 59.192 50.000 8.45 0.00 42.39 2.57
317 318 0.808125 TGCGTGTATGCACCCAAATC 59.192 50.000 8.45 0.00 42.39 2.17
318 319 2.954161 TGCGTGTATGCACCCAAAT 58.046 47.368 8.45 0.00 42.39 2.32
319 320 4.483090 TGCGTGTATGCACCCAAA 57.517 50.000 8.45 0.00 42.39 3.28
325 326 6.862090 TGTAAATATATACGTGCGTGTATGCA 59.138 34.615 19.27 0.00 43.95 3.96
326 327 7.268186 TGTAAATATATACGTGCGTGTATGC 57.732 36.000 19.27 3.63 35.85 3.14
327 328 9.670180 CATTGTAAATATATACGTGCGTGTATG 57.330 33.333 19.27 3.49 35.85 2.39
328 329 9.628746 TCATTGTAAATATATACGTGCGTGTAT 57.371 29.630 15.86 15.86 38.54 2.29
329 330 9.120422 CTCATTGTAAATATATACGTGCGTGTA 57.880 33.333 7.55 5.58 0.00 2.90
330 331 7.358931 GCTCATTGTAAATATATACGTGCGTGT 60.359 37.037 7.55 3.25 0.00 4.49
331 332 6.948228 GCTCATTGTAAATATATACGTGCGTG 59.052 38.462 7.55 0.00 0.00 5.34
332 333 6.643360 TGCTCATTGTAAATATATACGTGCGT 59.357 34.615 0.00 2.05 0.00 5.24
333 334 7.044589 TGCTCATTGTAAATATATACGTGCG 57.955 36.000 0.00 0.00 0.00 5.34
334 335 6.955963 GCTGCTCATTGTAAATATATACGTGC 59.044 38.462 0.00 0.00 0.00 5.34
335 336 7.413000 GGGCTGCTCATTGTAAATATATACGTG 60.413 40.741 0.00 0.00 0.00 4.49
336 337 6.594159 GGGCTGCTCATTGTAAATATATACGT 59.406 38.462 0.00 0.00 0.00 3.57
337 338 6.593770 TGGGCTGCTCATTGTAAATATATACG 59.406 38.462 0.00 0.00 0.00 3.06
338 339 7.413000 CGTGGGCTGCTCATTGTAAATATATAC 60.413 40.741 5.08 0.00 0.00 1.47
339 340 6.593770 CGTGGGCTGCTCATTGTAAATATATA 59.406 38.462 5.08 0.00 0.00 0.86
340 341 5.412594 CGTGGGCTGCTCATTGTAAATATAT 59.587 40.000 5.08 0.00 0.00 0.86
341 342 4.754618 CGTGGGCTGCTCATTGTAAATATA 59.245 41.667 5.08 0.00 0.00 0.86
342 343 3.565482 CGTGGGCTGCTCATTGTAAATAT 59.435 43.478 5.08 0.00 0.00 1.28
343 344 2.942376 CGTGGGCTGCTCATTGTAAATA 59.058 45.455 5.08 0.00 0.00 1.40
344 345 1.745087 CGTGGGCTGCTCATTGTAAAT 59.255 47.619 5.08 0.00 0.00 1.40
345 346 1.164411 CGTGGGCTGCTCATTGTAAA 58.836 50.000 5.08 0.00 0.00 2.01
346 347 0.676466 CCGTGGGCTGCTCATTGTAA 60.676 55.000 5.08 0.00 0.00 2.41
347 348 1.078497 CCGTGGGCTGCTCATTGTA 60.078 57.895 5.08 0.00 0.00 2.41
348 349 2.360350 CCGTGGGCTGCTCATTGT 60.360 61.111 5.08 0.00 0.00 2.71
349 350 3.818787 GCCGTGGGCTGCTCATTG 61.819 66.667 5.08 1.07 46.69 2.82
359 360 1.105167 TGTATAGTCGAGGCCGTGGG 61.105 60.000 0.00 0.00 37.05 4.61
360 361 0.959553 ATGTATAGTCGAGGCCGTGG 59.040 55.000 0.00 0.00 37.05 4.94
361 362 1.607148 TCATGTATAGTCGAGGCCGTG 59.393 52.381 0.00 0.00 37.05 4.94
362 363 1.977056 TCATGTATAGTCGAGGCCGT 58.023 50.000 0.00 0.00 37.05 5.68
363 364 4.156190 AGTTATCATGTATAGTCGAGGCCG 59.844 45.833 0.00 0.00 37.07 6.13
364 365 5.646577 AGTTATCATGTATAGTCGAGGCC 57.353 43.478 0.00 0.00 0.00 5.19
365 366 6.598457 TCCTAGTTATCATGTATAGTCGAGGC 59.402 42.308 0.00 0.00 0.00 4.70
366 367 7.281324 CCTCCTAGTTATCATGTATAGTCGAGG 59.719 44.444 0.00 0.00 0.00 4.63
367 368 7.201661 GCCTCCTAGTTATCATGTATAGTCGAG 60.202 44.444 0.00 0.00 0.00 4.04
368 369 6.598457 GCCTCCTAGTTATCATGTATAGTCGA 59.402 42.308 0.00 0.00 0.00 4.20
369 370 6.457122 CGCCTCCTAGTTATCATGTATAGTCG 60.457 46.154 0.00 0.00 0.00 4.18
370 371 6.183360 CCGCCTCCTAGTTATCATGTATAGTC 60.183 46.154 0.00 0.00 0.00 2.59
371 372 5.652891 CCGCCTCCTAGTTATCATGTATAGT 59.347 44.000 0.00 0.00 0.00 2.12
372 373 5.067936 CCCGCCTCCTAGTTATCATGTATAG 59.932 48.000 0.00 0.00 0.00 1.31
373 374 4.954202 CCCGCCTCCTAGTTATCATGTATA 59.046 45.833 0.00 0.00 0.00 1.47
374 375 3.769844 CCCGCCTCCTAGTTATCATGTAT 59.230 47.826 0.00 0.00 0.00 2.29
375 376 3.162666 CCCGCCTCCTAGTTATCATGTA 58.837 50.000 0.00 0.00 0.00 2.29
376 377 1.971357 CCCGCCTCCTAGTTATCATGT 59.029 52.381 0.00 0.00 0.00 3.21
377 378 1.276421 CCCCGCCTCCTAGTTATCATG 59.724 57.143 0.00 0.00 0.00 3.07
378 379 1.645710 CCCCGCCTCCTAGTTATCAT 58.354 55.000 0.00 0.00 0.00 2.45
379 380 1.119574 GCCCCGCCTCCTAGTTATCA 61.120 60.000 0.00 0.00 0.00 2.15
380 381 1.119574 TGCCCCGCCTCCTAGTTATC 61.120 60.000 0.00 0.00 0.00 1.75
381 382 0.693092 TTGCCCCGCCTCCTAGTTAT 60.693 55.000 0.00 0.00 0.00 1.89
382 383 1.306312 TTGCCCCGCCTCCTAGTTA 60.306 57.895 0.00 0.00 0.00 2.24
383 384 2.609610 TTGCCCCGCCTCCTAGTT 60.610 61.111 0.00 0.00 0.00 2.24
384 385 3.083997 CTTGCCCCGCCTCCTAGT 61.084 66.667 0.00 0.00 0.00 2.57
385 386 3.866582 CCTTGCCCCGCCTCCTAG 61.867 72.222 0.00 0.00 0.00 3.02
386 387 3.320411 TACCTTGCCCCGCCTCCTA 62.320 63.158 0.00 0.00 0.00 2.94
387 388 4.733725 TACCTTGCCCCGCCTCCT 62.734 66.667 0.00 0.00 0.00 3.69
388 389 4.176752 CTACCTTGCCCCGCCTCC 62.177 72.222 0.00 0.00 0.00 4.30
389 390 4.176752 CCTACCTTGCCCCGCCTC 62.177 72.222 0.00 0.00 0.00 4.70
390 391 4.733725 TCCTACCTTGCCCCGCCT 62.734 66.667 0.00 0.00 0.00 5.52
391 392 2.567664 ATTTCCTACCTTGCCCCGCC 62.568 60.000 0.00 0.00 0.00 6.13
392 393 1.076995 ATTTCCTACCTTGCCCCGC 60.077 57.895 0.00 0.00 0.00 6.13
393 394 0.254747 TCATTTCCTACCTTGCCCCG 59.745 55.000 0.00 0.00 0.00 5.73
394 395 2.755952 ATCATTTCCTACCTTGCCCC 57.244 50.000 0.00 0.00 0.00 5.80
395 396 3.903467 AGAATCATTTCCTACCTTGCCC 58.097 45.455 0.00 0.00 31.84 5.36
396 397 5.437060 TGTAGAATCATTTCCTACCTTGCC 58.563 41.667 0.00 0.00 31.84 4.52
397 398 8.854614 ATATGTAGAATCATTTCCTACCTTGC 57.145 34.615 0.00 0.00 31.84 4.01
403 404 9.586435 CGCATGTATATGTAGAATCATTTCCTA 57.414 33.333 1.14 0.00 36.65 2.94
404 405 8.314021 TCGCATGTATATGTAGAATCATTTCCT 58.686 33.333 1.14 0.00 36.65 3.36
405 406 8.479313 TCGCATGTATATGTAGAATCATTTCC 57.521 34.615 1.14 0.00 36.65 3.13
412 413 9.684448 GCAGTATATCGCATGTATATGTAGAAT 57.316 33.333 11.02 2.45 36.65 2.40
413 414 8.135529 GGCAGTATATCGCATGTATATGTAGAA 58.864 37.037 11.02 0.00 36.65 2.10
414 415 7.502561 AGGCAGTATATCGCATGTATATGTAGA 59.497 37.037 11.02 2.36 36.65 2.59
415 416 7.652727 AGGCAGTATATCGCATGTATATGTAG 58.347 38.462 11.02 0.00 36.65 2.74
416 417 7.582667 AGGCAGTATATCGCATGTATATGTA 57.417 36.000 11.02 0.00 36.65 2.29
417 418 6.471233 AGGCAGTATATCGCATGTATATGT 57.529 37.500 11.02 0.00 36.65 2.29
418 419 9.561270 GTATAGGCAGTATATCGCATGTATATG 57.439 37.037 11.02 0.00 37.36 1.78
419 420 9.297037 TGTATAGGCAGTATATCGCATGTATAT 57.703 33.333 0.00 1.52 0.00 0.86
420 421 8.685838 TGTATAGGCAGTATATCGCATGTATA 57.314 34.615 0.00 0.00 0.00 1.47
421 422 7.582667 TGTATAGGCAGTATATCGCATGTAT 57.417 36.000 0.00 0.00 0.00 2.29
422 423 7.399245 TTGTATAGGCAGTATATCGCATGTA 57.601 36.000 0.00 0.00 0.00 2.29
423 424 5.914898 TGTATAGGCAGTATATCGCATGT 57.085 39.130 0.00 0.00 0.00 3.21
424 425 7.545615 TCTTTTGTATAGGCAGTATATCGCATG 59.454 37.037 0.00 0.00 0.00 4.06
425 426 7.611770 TCTTTTGTATAGGCAGTATATCGCAT 58.388 34.615 0.00 0.00 0.00 4.73
426 427 6.988522 TCTTTTGTATAGGCAGTATATCGCA 58.011 36.000 0.00 0.00 0.00 5.10
427 428 9.751542 ATATCTTTTGTATAGGCAGTATATCGC 57.248 33.333 0.00 0.00 0.00 4.58
434 435 9.113838 CTGTTGAATATCTTTTGTATAGGCAGT 57.886 33.333 0.00 0.00 0.00 4.40
435 436 8.562892 CCTGTTGAATATCTTTTGTATAGGCAG 58.437 37.037 0.00 0.00 0.00 4.85
436 437 8.052748 ACCTGTTGAATATCTTTTGTATAGGCA 58.947 33.333 0.00 0.00 0.00 4.75
437 438 8.451908 ACCTGTTGAATATCTTTTGTATAGGC 57.548 34.615 0.00 0.00 0.00 3.93
441 442 9.747898 TTGGTACCTGTTGAATATCTTTTGTAT 57.252 29.630 14.36 0.00 0.00 2.29
442 443 9.005777 GTTGGTACCTGTTGAATATCTTTTGTA 57.994 33.333 14.36 0.00 0.00 2.41
443 444 7.308348 CGTTGGTACCTGTTGAATATCTTTTGT 60.308 37.037 14.36 0.00 0.00 2.83
444 445 7.021196 CGTTGGTACCTGTTGAATATCTTTTG 58.979 38.462 14.36 0.00 0.00 2.44
445 446 6.150474 CCGTTGGTACCTGTTGAATATCTTTT 59.850 38.462 14.36 0.00 0.00 2.27
446 447 5.646360 CCGTTGGTACCTGTTGAATATCTTT 59.354 40.000 14.36 0.00 0.00 2.52
447 448 5.046159 TCCGTTGGTACCTGTTGAATATCTT 60.046 40.000 14.36 0.00 0.00 2.40
448 449 4.468510 TCCGTTGGTACCTGTTGAATATCT 59.531 41.667 14.36 0.00 0.00 1.98
449 450 4.761975 TCCGTTGGTACCTGTTGAATATC 58.238 43.478 14.36 0.00 0.00 1.63
450 451 4.829872 TCCGTTGGTACCTGTTGAATAT 57.170 40.909 14.36 0.00 0.00 1.28
451 452 4.620589 TTCCGTTGGTACCTGTTGAATA 57.379 40.909 14.36 0.00 0.00 1.75
452 453 3.495434 TTCCGTTGGTACCTGTTGAAT 57.505 42.857 14.36 0.00 0.00 2.57
453 454 3.495434 ATTCCGTTGGTACCTGTTGAA 57.505 42.857 14.36 11.11 0.00 2.69
454 455 3.495434 AATTCCGTTGGTACCTGTTGA 57.505 42.857 14.36 2.08 0.00 3.18
455 456 4.577834 AAAATTCCGTTGGTACCTGTTG 57.422 40.909 14.36 0.21 0.00 3.33
456 457 6.063404 TCTAAAAATTCCGTTGGTACCTGTT 58.937 36.000 14.36 0.00 0.00 3.16
457 458 5.623169 TCTAAAAATTCCGTTGGTACCTGT 58.377 37.500 14.36 0.00 0.00 4.00
458 459 5.123344 CCTCTAAAAATTCCGTTGGTACCTG 59.877 44.000 14.36 2.87 0.00 4.00
469 470 2.287103 CCTACGCGCCTCTAAAAATTCC 59.713 50.000 5.73 0.00 0.00 3.01
498 499 4.962836 GGTGCTGCTGGTGCTGGT 62.963 66.667 0.00 0.00 40.48 4.00
499 500 4.960866 TGGTGCTGCTGGTGCTGG 62.961 66.667 0.00 0.00 40.48 4.85
501 502 2.360852 GATGGTGCTGCTGGTGCT 60.361 61.111 0.00 0.00 40.48 4.40
537 538 0.179097 GCCCTGAACCATCTCGAGAC 60.179 60.000 19.30 5.05 0.00 3.36
553 554 4.512914 GATCCACCTGCCCTGCCC 62.513 72.222 0.00 0.00 0.00 5.36
582 583 2.033602 CGGTGGAAGTGGAACCCC 59.966 66.667 0.00 0.00 37.80 4.95
585 586 2.112297 TGGCGGTGGAAGTGGAAC 59.888 61.111 0.00 0.00 0.00 3.62
599 603 0.036952 ATGGATCGATCGATGGTGGC 60.037 55.000 33.86 18.73 34.60 5.01
616 620 1.807165 CTGGCGTCTGTGACCGATG 60.807 63.158 0.00 0.00 0.00 3.84
624 628 1.079819 CATTCCGTCTGGCGTCTGT 60.080 57.895 0.00 0.00 39.32 3.41
625 629 0.172578 TACATTCCGTCTGGCGTCTG 59.827 55.000 0.00 0.00 39.32 3.51
626 630 0.172803 GTACATTCCGTCTGGCGTCT 59.827 55.000 0.00 0.00 39.32 4.18
627 631 0.172803 AGTACATTCCGTCTGGCGTC 59.827 55.000 0.00 0.00 39.32 5.19
629 633 0.456221 AGAGTACATTCCGTCTGGCG 59.544 55.000 0.00 0.00 40.95 5.69
630 634 1.927895 CAGAGTACATTCCGTCTGGC 58.072 55.000 0.00 0.00 34.06 4.85
631 635 1.799181 CGCAGAGTACATTCCGTCTGG 60.799 57.143 8.98 0.00 37.49 3.86
651 655 0.596341 ACCGCCATGAAAACGCAAAC 60.596 50.000 0.00 0.00 0.00 2.93
652 656 0.952280 TACCGCCATGAAAACGCAAA 59.048 45.000 0.00 0.00 0.00 3.68
704 727 2.436292 GGCACCAGCTCAGCTCAG 60.436 66.667 0.00 0.00 36.40 3.35
705 728 2.926779 AGGCACCAGCTCAGCTCA 60.927 61.111 0.00 0.00 36.40 4.26
706 729 2.436292 CAGGCACCAGCTCAGCTC 60.436 66.667 0.00 0.00 36.40 4.09
707 730 4.031129 CCAGGCACCAGCTCAGCT 62.031 66.667 0.00 0.00 40.77 4.24
708 731 3.857309 AACCAGGCACCAGCTCAGC 62.857 63.158 0.00 0.00 41.70 4.26
709 732 1.970114 CAACCAGGCACCAGCTCAG 60.970 63.158 0.00 0.00 41.70 3.35
767 831 0.395862 TCGCTCCCAAACAAACCCAA 60.396 50.000 0.00 0.00 0.00 4.12
769 833 1.524008 CCTCGCTCCCAAACAAACCC 61.524 60.000 0.00 0.00 0.00 4.11
1043 1165 1.693640 CCCTCCATGCTTCCAACCT 59.306 57.895 0.00 0.00 0.00 3.50
1275 1428 3.249189 TTGGACAGCCGCCTCCTT 61.249 61.111 6.32 0.00 36.79 3.36
1276 1429 3.710722 CTTGGACAGCCGCCTCCT 61.711 66.667 6.32 0.00 36.79 3.69
1279 1432 2.348998 CTTCTTGGACAGCCGCCT 59.651 61.111 0.00 0.00 36.79 5.52
1441 1594 2.462456 CTACAGCAGCAGTGGAAAGA 57.538 50.000 0.00 0.00 0.00 2.52
1495 1656 3.972276 GGAGAGCTCGGCTAGGCG 61.972 72.222 31.00 31.00 39.88 5.52
1528 1693 5.988561 AGAAGAAGAAGCGGCTAAGATTATG 59.011 40.000 1.35 0.00 0.00 1.90
1560 1725 8.661352 ACAAGAAGAAGAAGAAGAAGAAGAAG 57.339 34.615 0.00 0.00 0.00 2.85
1561 1726 8.887717 CAACAAGAAGAAGAAGAAGAAGAAGAA 58.112 33.333 0.00 0.00 0.00 2.52
1563 1728 8.207521 ACAACAAGAAGAAGAAGAAGAAGAAG 57.792 34.615 0.00 0.00 0.00 2.85
1564 1729 8.454106 CAACAACAAGAAGAAGAAGAAGAAGAA 58.546 33.333 0.00 0.00 0.00 2.52
1565 1730 7.414540 GCAACAACAAGAAGAAGAAGAAGAAGA 60.415 37.037 0.00 0.00 0.00 2.87
1566 1731 6.690528 GCAACAACAAGAAGAAGAAGAAGAAG 59.309 38.462 0.00 0.00 0.00 2.85
1567 1732 6.375455 AGCAACAACAAGAAGAAGAAGAAGAA 59.625 34.615 0.00 0.00 0.00 2.52
1568 1733 5.882557 AGCAACAACAAGAAGAAGAAGAAGA 59.117 36.000 0.00 0.00 0.00 2.87
1569 1734 5.970023 CAGCAACAACAAGAAGAAGAAGAAG 59.030 40.000 0.00 0.00 0.00 2.85
1570 1735 5.677091 GCAGCAACAACAAGAAGAAGAAGAA 60.677 40.000 0.00 0.00 0.00 2.52
1571 1736 4.201950 GCAGCAACAACAAGAAGAAGAAGA 60.202 41.667 0.00 0.00 0.00 2.87
1572 1737 4.040376 GCAGCAACAACAAGAAGAAGAAG 58.960 43.478 0.00 0.00 0.00 2.85
1573 1738 3.696051 AGCAGCAACAACAAGAAGAAGAA 59.304 39.130 0.00 0.00 0.00 2.52
1574 1739 3.282021 AGCAGCAACAACAAGAAGAAGA 58.718 40.909 0.00 0.00 0.00 2.87
1575 1740 3.705043 AGCAGCAACAACAAGAAGAAG 57.295 42.857 0.00 0.00 0.00 2.85
1576 1741 3.772932 CAAGCAGCAACAACAAGAAGAA 58.227 40.909 0.00 0.00 0.00 2.52
1577 1742 2.480073 GCAAGCAGCAACAACAAGAAGA 60.480 45.455 0.00 0.00 44.79 2.87
1578 1743 1.856597 GCAAGCAGCAACAACAAGAAG 59.143 47.619 0.00 0.00 44.79 2.85
1579 1744 1.925229 GCAAGCAGCAACAACAAGAA 58.075 45.000 0.00 0.00 44.79 2.52
1580 1745 3.646650 GCAAGCAGCAACAACAAGA 57.353 47.368 0.00 0.00 44.79 3.02
1634 1799 4.832248 CTGATGTACTGTACACACCCAAT 58.168 43.478 21.84 5.30 42.23 3.16
1641 1806 4.115516 CTCATGGCTGATGTACTGTACAC 58.884 47.826 21.84 15.61 42.23 2.90
1675 1841 9.345158 CTAGCTAGCTAGATTACCTTGTGGTGG 62.345 48.148 37.99 12.52 45.86 4.61
1717 1887 2.432510 AGCTAGTAATGGTGGCTGACTC 59.567 50.000 0.00 0.00 31.68 3.36
1719 1889 2.990066 AGCTAGTAATGGTGGCTGAC 57.010 50.000 0.00 0.00 31.68 3.51
1761 1947 4.021368 GGAGTACTAGGAAACAACAGAGCA 60.021 45.833 0.00 0.00 0.00 4.26
1770 1956 4.096231 GTCTCGGAAGGAGTACTAGGAAAC 59.904 50.000 0.00 0.00 43.60 2.78
1783 1969 4.215399 TGCACAAATTTAAGTCTCGGAAGG 59.785 41.667 0.00 0.00 0.00 3.46
1786 1972 3.188460 GCTGCACAAATTTAAGTCTCGGA 59.812 43.478 0.00 0.00 0.00 4.55
1787 1973 3.189287 AGCTGCACAAATTTAAGTCTCGG 59.811 43.478 1.02 0.00 0.00 4.63
1788 1974 4.410492 AGCTGCACAAATTTAAGTCTCG 57.590 40.909 1.02 0.00 0.00 4.04
1825 2011 6.555360 CCAGGTAGGAACTAGGACAGATTTAT 59.445 42.308 0.00 0.00 44.14 1.40
1826 2012 5.897824 CCAGGTAGGAACTAGGACAGATTTA 59.102 44.000 0.00 0.00 44.14 1.40
1831 2017 2.761208 CACCAGGTAGGAACTAGGACAG 59.239 54.545 0.00 0.00 44.14 3.51
1840 2026 3.806949 AATCAAAGCACCAGGTAGGAA 57.193 42.857 0.00 0.00 41.22 3.36
1841 2027 3.806949 AAATCAAAGCACCAGGTAGGA 57.193 42.857 0.00 0.00 41.22 2.94
1844 2030 4.278170 CACTCAAAATCAAAGCACCAGGTA 59.722 41.667 0.00 0.00 0.00 3.08
1845 2031 3.068590 CACTCAAAATCAAAGCACCAGGT 59.931 43.478 0.00 0.00 0.00 4.00
1846 2032 3.318839 TCACTCAAAATCAAAGCACCAGG 59.681 43.478 0.00 0.00 0.00 4.45
1850 2036 5.173774 TCACTCACTCAAAATCAAAGCAC 57.826 39.130 0.00 0.00 0.00 4.40
1853 2039 6.293298 CCTCACTCACTCACTCAAAATCAAAG 60.293 42.308 0.00 0.00 0.00 2.77
1874 2060 1.004745 GTTCTTCATCAAGGGGCCTCA 59.995 52.381 4.79 0.00 0.00 3.86
1879 2065 4.813027 CATGTTTGTTCTTCATCAAGGGG 58.187 43.478 0.00 0.00 0.00 4.79
1881 2067 4.873817 TGCATGTTTGTTCTTCATCAAGG 58.126 39.130 0.00 0.00 0.00 3.61
1882 2068 6.210796 TCTTGCATGTTTGTTCTTCATCAAG 58.789 36.000 0.00 0.00 33.52 3.02
1884 2070 5.771153 TCTTGCATGTTTGTTCTTCATCA 57.229 34.783 0.00 0.00 0.00 3.07
1886 2072 6.335471 TGATCTTGCATGTTTGTTCTTCAT 57.665 33.333 0.00 0.00 0.00 2.57
1913 2099 6.303259 GTGTAAAGACGAAATGAAACAGCATC 59.697 38.462 0.00 0.00 0.00 3.91
1917 2103 6.715464 ACAGTGTAAAGACGAAATGAAACAG 58.285 36.000 0.00 0.00 0.00 3.16
1918 2104 6.537301 AGACAGTGTAAAGACGAAATGAAACA 59.463 34.615 0.00 0.00 0.00 2.83
1923 2112 8.738199 TTAGTAGACAGTGTAAAGACGAAATG 57.262 34.615 0.00 0.00 0.00 2.32
1924 2113 9.924650 AATTAGTAGACAGTGTAAAGACGAAAT 57.075 29.630 0.00 0.00 0.00 2.17
1929 2118 7.331193 CCACCAATTAGTAGACAGTGTAAAGAC 59.669 40.741 0.00 0.00 0.00 3.01
1935 2124 4.020485 GGACCACCAATTAGTAGACAGTGT 60.020 45.833 0.00 0.00 35.97 3.55
1937 2126 4.426704 AGGACCACCAATTAGTAGACAGT 58.573 43.478 0.00 0.00 38.94 3.55
1938 2127 5.178797 CAAGGACCACCAATTAGTAGACAG 58.821 45.833 0.00 0.00 38.94 3.51
1939 2128 4.595781 ACAAGGACCACCAATTAGTAGACA 59.404 41.667 0.00 0.00 38.94 3.41
1942 2131 6.469410 TGTAACAAGGACCACCAATTAGTAG 58.531 40.000 0.00 0.00 38.94 2.57
1943 2132 6.436738 TGTAACAAGGACCACCAATTAGTA 57.563 37.500 0.00 0.00 38.94 1.82
1945 2134 5.768164 ACTTGTAACAAGGACCACCAATTAG 59.232 40.000 0.00 0.00 38.94 1.73
1952 2141 6.694447 TGATAGTACTTGTAACAAGGACCAC 58.306 40.000 0.00 0.00 31.40 4.16
1963 2152 9.459640 GCAACGAGATAATTGATAGTACTTGTA 57.540 33.333 0.00 0.00 0.00 2.41
1964 2153 8.198109 AGCAACGAGATAATTGATAGTACTTGT 58.802 33.333 0.00 0.00 0.00 3.16
1966 2155 9.035607 CAAGCAACGAGATAATTGATAGTACTT 57.964 33.333 0.00 0.00 0.00 2.24
1972 2161 5.047188 TCGCAAGCAACGAGATAATTGATA 58.953 37.500 0.00 0.00 33.96 2.15
1974 2163 3.258228 TCGCAAGCAACGAGATAATTGA 58.742 40.909 0.00 0.00 33.96 2.57
1980 2169 0.108186 TGGATCGCAAGCAACGAGAT 60.108 50.000 0.00 0.00 43.74 2.75
1981 2170 0.320334 TTGGATCGCAAGCAACGAGA 60.320 50.000 0.00 0.00 43.74 4.04
1982 2171 0.516877 TTTGGATCGCAAGCAACGAG 59.483 50.000 0.00 0.00 43.74 4.18
1983 2172 1.164411 ATTTGGATCGCAAGCAACGA 58.836 45.000 0.00 0.00 44.75 3.85
1984 2173 1.650153 CAATTTGGATCGCAAGCAACG 59.350 47.619 0.00 0.00 37.18 4.10
1989 2178 2.919229 GCTCAACAATTTGGATCGCAAG 59.081 45.455 0.78 0.00 33.06 4.01
1995 2184 6.442513 GCTAGTTAGCTCAACAATTTGGAT 57.557 37.500 3.93 0.00 45.62 3.41
2010 2199 1.299468 CCGCGAGCCAGCTAGTTAG 60.299 63.158 8.23 0.00 34.40 2.34
2011 2200 2.782222 CCCGCGAGCCAGCTAGTTA 61.782 63.158 8.23 0.00 34.40 2.24
2012 2201 4.148825 CCCGCGAGCCAGCTAGTT 62.149 66.667 8.23 0.00 34.40 2.24
2080 2273 4.444449 CCTGAGCTCCTCATTGATTCATCA 60.444 45.833 12.15 0.00 39.92 3.07
2081 2274 4.066490 CCTGAGCTCCTCATTGATTCATC 58.934 47.826 12.15 0.00 39.92 2.92
2082 2275 3.181442 CCCTGAGCTCCTCATTGATTCAT 60.181 47.826 12.15 0.00 39.92 2.57
2169 2373 3.139584 ACCACCACCATCATCATCATCAT 59.860 43.478 0.00 0.00 0.00 2.45
2172 2376 2.423803 CCACCACCACCATCATCATCAT 60.424 50.000 0.00 0.00 0.00 2.45
2449 2653 3.228188 ACAAATTGACAAGCTCCCTCA 57.772 42.857 0.00 0.00 0.00 3.86
2627 2890 1.818785 GAGTGAGCCCTGCATCTGC 60.819 63.158 0.00 0.00 42.50 4.26
2628 2891 1.068895 CTAGAGTGAGCCCTGCATCTG 59.931 57.143 0.00 0.00 0.00 2.90
2629 2892 1.063341 TCTAGAGTGAGCCCTGCATCT 60.063 52.381 0.00 0.00 0.00 2.90
2630 2893 1.407936 TCTAGAGTGAGCCCTGCATC 58.592 55.000 0.00 0.00 0.00 3.91
2649 2912 9.413734 TCTTCTTTCTTTCTTTCTTCCTTCATT 57.586 29.630 0.00 0.00 0.00 2.57
2650 2913 8.986929 TCTTCTTTCTTTCTTTCTTCCTTCAT 57.013 30.769 0.00 0.00 0.00 2.57
2652 2915 9.891828 GAATCTTCTTTCTTTCTTTCTTCCTTC 57.108 33.333 0.00 0.00 0.00 3.46
2697 2961 9.945904 CTAGAGTACCAGTAAAAGAAAAAGGAT 57.054 33.333 0.00 0.00 0.00 3.24
2698 2962 7.876582 GCTAGAGTACCAGTAAAAGAAAAAGGA 59.123 37.037 0.00 0.00 0.00 3.36
2699 2963 7.660208 TGCTAGAGTACCAGTAAAAGAAAAAGG 59.340 37.037 0.00 0.00 0.00 3.11
2700 2964 8.603242 TGCTAGAGTACCAGTAAAAGAAAAAG 57.397 34.615 0.00 0.00 0.00 2.27
2701 2965 7.660208 CCTGCTAGAGTACCAGTAAAAGAAAAA 59.340 37.037 0.00 0.00 0.00 1.94
2706 2970 5.662674 ACCTGCTAGAGTACCAGTAAAAG 57.337 43.478 0.00 0.00 0.00 2.27
2730 2996 6.425721 GTGAAACTACTTACCATGCAGTAACA 59.574 38.462 0.00 0.00 0.00 2.41
2731 2997 6.128363 GGTGAAACTACTTACCATGCAGTAAC 60.128 42.308 0.00 0.00 36.74 2.50
2771 3039 2.807895 GTACGTCCATGCACGCGT 60.808 61.111 9.58 5.58 43.93 6.01
2772 3040 3.897502 CGTACGTCCATGCACGCG 61.898 66.667 9.58 3.53 43.93 6.01
2773 3041 3.550992 CCGTACGTCCATGCACGC 61.551 66.667 9.58 0.00 43.93 5.34
2774 3042 2.883730 CCCGTACGTCCATGCACG 60.884 66.667 15.21 7.83 45.65 5.34
2775 3043 1.808390 GTCCCGTACGTCCATGCAC 60.808 63.158 15.21 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.