Multiple sequence alignment - TraesCS3B01G595700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G595700 chr3B 100.000 3164 0 0 1 3164 818784742 818787905 0.000000e+00 5843
1 TraesCS3B01G595700 chr3B 80.871 941 145 24 877 1788 830320704 830321638 0.000000e+00 708
2 TraesCS3B01G595700 chr3B 80.765 941 146 23 877 1788 830610730 830611664 0.000000e+00 702
3 TraesCS3B01G595700 chr3B 80.407 934 148 27 877 1788 829817259 829818179 0.000000e+00 678
4 TraesCS3B01G595700 chr3B 79.023 1044 164 34 781 1788 829935163 829936187 0.000000e+00 664
5 TraesCS3B01G595700 chr3B 78.294 1055 151 43 767 1788 830055648 830056657 2.700000e-170 608
6 TraesCS3B01G595700 chr3B 79.798 693 102 22 767 1439 829742141 829742815 1.330000e-128 470
7 TraesCS3B01G595700 chr3B 77.851 605 104 17 1209 1788 830249878 830250477 6.500000e-92 348
8 TraesCS3B01G595700 chr3B 77.649 604 108 14 1209 1788 827515928 827515328 3.020000e-90 342
9 TraesCS3B01G595700 chr3B 77.483 604 109 15 1209 1788 830524074 830524674 1.410000e-88 337
10 TraesCS3B01G595700 chr3B 80.000 240 36 5 1914 2147 829818140 829818373 1.950000e-37 167
11 TraesCS3B01G595700 chr3B 80.717 223 34 7 1914 2133 830453650 830453866 7.020000e-37 165
12 TraesCS3B01G595700 chr3B 78.750 240 39 8 1914 2147 830213889 830214122 1.970000e-32 150
13 TraesCS3B01G595700 chr3B 80.095 211 32 8 1914 2121 829849168 829849371 7.070000e-32 148
14 TraesCS3B01G595700 chr3B 81.287 171 32 0 1342 1512 827496557 827496387 4.260000e-29 139
15 TraesCS3B01G595700 chr3A 90.147 2385 115 37 629 2926 741845849 741843498 0.000000e+00 2992
16 TraesCS3B01G595700 chr3A 80.673 921 133 24 897 1787 745854312 745853407 0.000000e+00 673
17 TraesCS3B01G595700 chr3A 75.349 860 152 40 1295 2115 747774443 747775281 3.000000e-95 359
18 TraesCS3B01G595700 chr3A 89.947 189 19 0 434 622 741846416 741846228 8.770000e-61 244
19 TraesCS3B01G595700 chr3A 86.070 201 27 1 236 436 396523288 396523487 6.870000e-52 215
20 TraesCS3B01G595700 chr3A 76.692 266 54 6 1300 1561 747886933 747887194 1.180000e-29 141
21 TraesCS3B01G595700 chr3A 77.293 229 45 5 1335 1561 747969073 747969296 9.210000e-26 128
22 TraesCS3B01G595700 chr3D 90.957 1128 47 20 444 1542 608749984 608748883 0.000000e+00 1467
23 TraesCS3B01G595700 chr3D 90.707 1033 45 17 2048 3050 608748882 608747871 0.000000e+00 1328
24 TraesCS3B01G595700 chr3D 91.322 242 16 2 1 238 608750240 608750000 3.040000e-85 326
25 TraesCS3B01G595700 chr3D 78.917 517 80 10 1298 1788 612004586 612005099 1.090000e-84 324
26 TraesCS3B01G595700 chr3D 84.158 202 32 0 236 437 610371952 610371751 2.490000e-46 196
27 TraesCS3B01G595700 chr3D 80.269 223 35 4 1914 2133 612005060 612005276 3.270000e-35 159
28 TraesCS3B01G595700 chrUn 80.300 934 149 27 877 1788 184613740 184614660 0.000000e+00 673
29 TraesCS3B01G595700 chrUn 79.119 1044 163 34 781 1788 184582380 184583404 0.000000e+00 669
30 TraesCS3B01G595700 chrUn 78.867 653 111 13 1160 1788 232417146 232416497 1.760000e-112 416
31 TraesCS3B01G595700 chrUn 78.542 480 82 17 1295 1759 365060221 365059748 2.390000e-76 296
32 TraesCS3B01G595700 chrUn 87.000 200 26 0 1589 1788 463261546 463261745 3.180000e-55 226
33 TraesCS3B01G595700 chrUn 80.417 240 35 5 1914 2147 184614621 184614854 4.200000e-39 172
34 TraesCS3B01G595700 chrUn 80.417 240 35 5 1914 2147 410134262 410134029 4.200000e-39 172
35 TraesCS3B01G595700 chrUn 80.095 211 32 8 1914 2121 348010259 348010462 7.070000e-32 148
36 TraesCS3B01G595700 chr2A 88.263 213 22 2 233 444 89589501 89589291 5.240000e-63 252
37 TraesCS3B01G595700 chr5B 89.163 203 19 3 236 437 684618577 684618777 1.880000e-62 250
38 TraesCS3B01G595700 chr5B 85.714 203 27 2 236 437 458630473 458630272 2.470000e-51 213
39 TraesCS3B01G595700 chr6B 87.562 201 20 5 239 438 133443747 133443551 8.830000e-56 228
40 TraesCS3B01G595700 chr6A 86.802 197 25 1 238 434 235028278 235028083 5.310000e-53 219
41 TraesCS3B01G595700 chr1B 85.644 202 27 2 236 436 380604698 380604898 8.890000e-51 211
42 TraesCS3B01G595700 chr7D 84.729 203 30 1 234 436 32209963 32210164 5.350000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G595700 chr3B 818784742 818787905 3163 False 5843.000000 5843 100.000000 1 3164 1 chr3B.!!$F1 3163
1 TraesCS3B01G595700 chr3B 830320704 830321638 934 False 708.000000 708 80.871000 877 1788 1 chr3B.!!$F8 911
2 TraesCS3B01G595700 chr3B 830610730 830611664 934 False 702.000000 702 80.765000 877 1788 1 chr3B.!!$F11 911
3 TraesCS3B01G595700 chr3B 829935163 829936187 1024 False 664.000000 664 79.023000 781 1788 1 chr3B.!!$F4 1007
4 TraesCS3B01G595700 chr3B 830055648 830056657 1009 False 608.000000 608 78.294000 767 1788 1 chr3B.!!$F5 1021
5 TraesCS3B01G595700 chr3B 829742141 829742815 674 False 470.000000 470 79.798000 767 1439 1 chr3B.!!$F2 672
6 TraesCS3B01G595700 chr3B 829817259 829818373 1114 False 422.500000 678 80.203500 877 2147 2 chr3B.!!$F12 1270
7 TraesCS3B01G595700 chr3B 830249878 830250477 599 False 348.000000 348 77.851000 1209 1788 1 chr3B.!!$F7 579
8 TraesCS3B01G595700 chr3B 827515328 827515928 600 True 342.000000 342 77.649000 1209 1788 1 chr3B.!!$R2 579
9 TraesCS3B01G595700 chr3B 830524074 830524674 600 False 337.000000 337 77.483000 1209 1788 1 chr3B.!!$F10 579
10 TraesCS3B01G595700 chr3A 741843498 741846416 2918 True 1618.000000 2992 90.047000 434 2926 2 chr3A.!!$R2 2492
11 TraesCS3B01G595700 chr3A 745853407 745854312 905 True 673.000000 673 80.673000 897 1787 1 chr3A.!!$R1 890
12 TraesCS3B01G595700 chr3A 747774443 747775281 838 False 359.000000 359 75.349000 1295 2115 1 chr3A.!!$F2 820
13 TraesCS3B01G595700 chr3D 608747871 608750240 2369 True 1040.333333 1467 90.995333 1 3050 3 chr3D.!!$R2 3049
14 TraesCS3B01G595700 chr3D 612004586 612005276 690 False 241.500000 324 79.593000 1298 2133 2 chr3D.!!$F1 835
15 TraesCS3B01G595700 chrUn 184582380 184583404 1024 False 669.000000 669 79.119000 781 1788 1 chrUn.!!$F1 1007
16 TraesCS3B01G595700 chrUn 184613740 184614854 1114 False 422.500000 673 80.358500 877 2147 2 chrUn.!!$F4 1270
17 TraesCS3B01G595700 chrUn 232416497 232417146 649 True 416.000000 416 78.867000 1160 1788 1 chrUn.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 262 0.036671 GGCCTTGTACAACGCTAGGT 60.037 55.0 23.06 0.0 32.69 3.08 F
416 421 0.252467 AGCACCTCTCCTAAGCACCT 60.252 55.0 0.00 0.0 0.00 4.00 F
1332 1768 0.501435 CCGACGAAGACAACGTGAAC 59.499 55.0 0.00 0.0 43.97 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 2080 0.095935 CGAACTCAAAGATGCTGCCG 59.904 55.000 0.00 0.0 0.00 5.69 R
1793 2267 1.077212 GGCATGTCCAGCACCATCT 60.077 57.895 0.00 0.0 34.01 2.90 R
3055 3713 0.682292 TGCACGTAGATGTGGGTTCA 59.318 50.000 4.13 0.0 40.26 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.534235 ACCGTCAAGCTCTCCAGGT 60.534 57.895 0.00 0.00 0.00 4.00
45 46 2.516460 CCTCTGCAGCAGCCATCC 60.516 66.667 18.43 0.00 41.13 3.51
60 61 3.157217 ATCCGCACGAGCTCCCATC 62.157 63.158 8.47 0.00 39.10 3.51
62 63 4.899239 CGCACGAGCTCCCATCCC 62.899 72.222 8.47 0.00 39.10 3.85
64 65 3.083349 CACGAGCTCCCATCCCCA 61.083 66.667 8.47 0.00 0.00 4.96
86 87 1.276421 GCTCCTTCACAGCACCTCTTA 59.724 52.381 0.00 0.00 36.82 2.10
126 127 2.128226 ATGGAGTGGGAGCCCCTT 59.872 61.111 11.10 0.71 45.70 3.95
201 206 1.335182 GTTCGATCGCTGAGAGATCCA 59.665 52.381 18.38 5.07 40.91 3.41
241 246 0.523519 GCTCTGTGCTTTGTTAGGCC 59.476 55.000 0.00 0.00 38.95 5.19
243 248 2.508526 CTCTGTGCTTTGTTAGGCCTT 58.491 47.619 12.58 0.00 0.00 4.35
244 249 2.227388 CTCTGTGCTTTGTTAGGCCTTG 59.773 50.000 12.58 0.00 0.00 3.61
246 251 3.146066 CTGTGCTTTGTTAGGCCTTGTA 58.854 45.455 12.58 0.00 0.00 2.41
250 255 3.316868 TGCTTTGTTAGGCCTTGTACAAC 59.683 43.478 12.58 9.82 30.86 3.32
251 256 3.608474 GCTTTGTTAGGCCTTGTACAACG 60.608 47.826 12.58 17.12 30.86 4.10
252 257 1.515081 TGTTAGGCCTTGTACAACGC 58.485 50.000 12.58 18.00 0.00 4.84
253 258 1.071071 TGTTAGGCCTTGTACAACGCT 59.929 47.619 23.06 14.38 0.00 5.07
254 259 2.299582 TGTTAGGCCTTGTACAACGCTA 59.700 45.455 23.06 13.63 0.00 4.26
255 260 2.928116 GTTAGGCCTTGTACAACGCTAG 59.072 50.000 23.06 6.97 0.00 3.42
256 261 0.249398 AGGCCTTGTACAACGCTAGG 59.751 55.000 23.06 15.56 33.14 3.02
257 262 0.036671 GGCCTTGTACAACGCTAGGT 60.037 55.000 23.06 0.00 32.69 3.08
258 263 1.076332 GCCTTGTACAACGCTAGGTG 58.924 55.000 18.69 2.02 41.87 4.00
259 264 1.076332 CCTTGTACAACGCTAGGTGC 58.924 55.000 3.59 0.00 39.07 5.01
260 265 1.337823 CCTTGTACAACGCTAGGTGCT 60.338 52.381 3.59 0.00 39.07 4.40
261 266 2.413837 CTTGTACAACGCTAGGTGCTT 58.586 47.619 3.59 0.00 39.07 3.91
262 267 3.581755 CTTGTACAACGCTAGGTGCTTA 58.418 45.455 3.59 0.00 39.07 3.09
263 268 3.226346 TGTACAACGCTAGGTGCTTAG 57.774 47.619 0.00 0.00 39.07 2.18
264 269 2.821378 TGTACAACGCTAGGTGCTTAGA 59.179 45.455 0.00 0.00 39.07 2.10
265 270 2.656560 ACAACGCTAGGTGCTTAGAG 57.343 50.000 0.00 0.00 39.07 2.43
266 271 2.168496 ACAACGCTAGGTGCTTAGAGA 58.832 47.619 0.00 0.00 39.07 3.10
267 272 2.164624 ACAACGCTAGGTGCTTAGAGAG 59.835 50.000 0.00 0.00 39.07 3.20
268 273 1.394618 ACGCTAGGTGCTTAGAGAGG 58.605 55.000 0.00 0.00 40.11 3.69
269 274 1.341187 ACGCTAGGTGCTTAGAGAGGT 60.341 52.381 0.00 0.00 40.11 3.85
270 275 1.066303 CGCTAGGTGCTTAGAGAGGTG 59.934 57.143 0.00 0.00 40.11 4.00
271 276 1.202475 GCTAGGTGCTTAGAGAGGTGC 60.202 57.143 0.00 0.00 38.95 5.01
272 277 2.383855 CTAGGTGCTTAGAGAGGTGCT 58.616 52.381 0.00 0.00 0.00 4.40
273 278 1.650528 AGGTGCTTAGAGAGGTGCTT 58.349 50.000 0.00 0.00 0.00 3.91
274 279 2.821437 AGGTGCTTAGAGAGGTGCTTA 58.179 47.619 0.00 0.00 0.00 3.09
275 280 3.173965 AGGTGCTTAGAGAGGTGCTTAA 58.826 45.455 0.00 0.00 0.00 1.85
276 281 3.583086 AGGTGCTTAGAGAGGTGCTTAAA 59.417 43.478 0.00 0.00 0.00 1.52
277 282 4.041691 AGGTGCTTAGAGAGGTGCTTAAAA 59.958 41.667 0.00 0.00 0.00 1.52
278 283 4.760204 GGTGCTTAGAGAGGTGCTTAAAAA 59.240 41.667 0.00 0.00 0.00 1.94
279 284 5.416013 GGTGCTTAGAGAGGTGCTTAAAAAT 59.584 40.000 0.00 0.00 0.00 1.82
280 285 6.598064 GGTGCTTAGAGAGGTGCTTAAAAATA 59.402 38.462 0.00 0.00 0.00 1.40
281 286 7.283354 GGTGCTTAGAGAGGTGCTTAAAAATAT 59.717 37.037 0.00 0.00 0.00 1.28
282 287 9.326413 GTGCTTAGAGAGGTGCTTAAAAATATA 57.674 33.333 0.00 0.00 0.00 0.86
283 288 9.899661 TGCTTAGAGAGGTGCTTAAAAATATAA 57.100 29.630 0.00 0.00 0.00 0.98
287 292 8.209917 AGAGAGGTGCTTAAAAATATAAACCG 57.790 34.615 0.00 0.00 0.00 4.44
288 293 8.044908 AGAGAGGTGCTTAAAAATATAAACCGA 58.955 33.333 0.00 0.00 0.00 4.69
289 294 8.209917 AGAGGTGCTTAAAAATATAAACCGAG 57.790 34.615 0.00 0.00 0.00 4.63
290 295 7.827729 AGAGGTGCTTAAAAATATAAACCGAGT 59.172 33.333 0.00 0.00 0.00 4.18
291 296 8.344446 AGGTGCTTAAAAATATAAACCGAGTT 57.656 30.769 0.00 0.00 0.00 3.01
292 297 8.799367 AGGTGCTTAAAAATATAAACCGAGTTT 58.201 29.630 7.11 7.11 39.24 2.66
293 298 9.414295 GGTGCTTAAAAATATAAACCGAGTTTT 57.586 29.630 7.22 0.00 37.01 2.43
301 306 8.965986 AAATATAAACCGAGTTTTTCTCAAGC 57.034 30.769 7.22 0.00 42.88 4.01
302 307 7.681939 ATATAAACCGAGTTTTTCTCAAGCA 57.318 32.000 7.22 0.00 42.88 3.91
303 308 3.692791 AACCGAGTTTTTCTCAAGCAC 57.307 42.857 0.00 0.00 42.88 4.40
304 309 1.947456 ACCGAGTTTTTCTCAAGCACC 59.053 47.619 0.00 0.00 42.88 5.01
305 310 1.946768 CCGAGTTTTTCTCAAGCACCA 59.053 47.619 0.00 0.00 42.88 4.17
306 311 2.031682 CCGAGTTTTTCTCAAGCACCAG 60.032 50.000 0.00 0.00 42.88 4.00
307 312 2.614057 CGAGTTTTTCTCAAGCACCAGT 59.386 45.455 0.00 0.00 42.88 4.00
308 313 3.546815 CGAGTTTTTCTCAAGCACCAGTG 60.547 47.826 0.00 0.00 42.88 3.66
309 314 3.356290 AGTTTTTCTCAAGCACCAGTGT 58.644 40.909 0.00 0.00 0.00 3.55
310 315 3.763897 AGTTTTTCTCAAGCACCAGTGTT 59.236 39.130 0.00 0.00 0.00 3.32
311 316 4.220602 AGTTTTTCTCAAGCACCAGTGTTT 59.779 37.500 0.00 0.00 34.29 2.83
312 317 5.417580 AGTTTTTCTCAAGCACCAGTGTTTA 59.582 36.000 0.00 0.00 32.72 2.01
313 318 6.096846 AGTTTTTCTCAAGCACCAGTGTTTAT 59.903 34.615 0.00 0.00 32.72 1.40
314 319 6.463995 TTTTCTCAAGCACCAGTGTTTATT 57.536 33.333 0.00 0.00 32.72 1.40
315 320 6.463995 TTTCTCAAGCACCAGTGTTTATTT 57.536 33.333 0.00 0.00 32.72 1.40
316 321 5.689383 TCTCAAGCACCAGTGTTTATTTC 57.311 39.130 0.00 0.00 32.72 2.17
317 322 5.376625 TCTCAAGCACCAGTGTTTATTTCT 58.623 37.500 0.00 0.00 32.72 2.52
318 323 6.530120 TCTCAAGCACCAGTGTTTATTTCTA 58.470 36.000 0.00 0.00 32.72 2.10
319 324 7.168219 TCTCAAGCACCAGTGTTTATTTCTAT 58.832 34.615 0.00 0.00 32.72 1.98
320 325 8.318412 TCTCAAGCACCAGTGTTTATTTCTATA 58.682 33.333 0.00 0.00 32.72 1.31
321 326 8.492673 TCAAGCACCAGTGTTTATTTCTATAG 57.507 34.615 0.00 0.00 32.72 1.31
322 327 7.552687 TCAAGCACCAGTGTTTATTTCTATAGG 59.447 37.037 0.00 0.00 32.72 2.57
323 328 7.195374 AGCACCAGTGTTTATTTCTATAGGA 57.805 36.000 0.00 0.00 0.00 2.94
324 329 7.275920 AGCACCAGTGTTTATTTCTATAGGAG 58.724 38.462 0.00 0.00 0.00 3.69
325 330 7.125811 AGCACCAGTGTTTATTTCTATAGGAGA 59.874 37.037 0.00 0.00 0.00 3.71
326 331 7.439655 GCACCAGTGTTTATTTCTATAGGAGAG 59.560 40.741 0.00 0.00 34.93 3.20
327 332 8.696374 CACCAGTGTTTATTTCTATAGGAGAGA 58.304 37.037 0.00 0.00 34.93 3.10
328 333 8.697292 ACCAGTGTTTATTTCTATAGGAGAGAC 58.303 37.037 0.00 0.00 34.93 3.36
329 334 7.863375 CCAGTGTTTATTTCTATAGGAGAGACG 59.137 40.741 0.00 0.00 34.93 4.18
330 335 7.380065 CAGTGTTTATTTCTATAGGAGAGACGC 59.620 40.741 0.00 0.00 34.93 5.19
331 336 6.641723 GTGTTTATTTCTATAGGAGAGACGCC 59.358 42.308 0.00 0.00 34.93 5.68
332 337 6.550108 TGTTTATTTCTATAGGAGAGACGCCT 59.450 38.462 0.00 0.00 37.45 5.52
333 338 7.722728 TGTTTATTTCTATAGGAGAGACGCCTA 59.277 37.037 0.00 4.00 39.98 3.93
334 339 8.574737 GTTTATTTCTATAGGAGAGACGCCTAA 58.425 37.037 5.48 0.00 39.20 2.69
335 340 8.880991 TTATTTCTATAGGAGAGACGCCTAAT 57.119 34.615 5.48 0.13 39.20 1.73
336 341 7.784470 ATTTCTATAGGAGAGACGCCTAATT 57.216 36.000 5.48 0.00 39.20 1.40
337 342 8.880991 ATTTCTATAGGAGAGACGCCTAATTA 57.119 34.615 5.48 0.00 39.20 1.40
338 343 8.701908 TTTCTATAGGAGAGACGCCTAATTAA 57.298 34.615 5.48 0.00 39.20 1.40
339 344 7.925043 TCTATAGGAGAGACGCCTAATTAAG 57.075 40.000 5.48 2.75 39.20 1.85
340 345 3.737032 AGGAGAGACGCCTAATTAAGC 57.263 47.619 0.00 0.00 30.33 3.09
341 346 3.031736 AGGAGAGACGCCTAATTAAGCA 58.968 45.455 6.85 0.00 30.33 3.91
342 347 3.643792 AGGAGAGACGCCTAATTAAGCAT 59.356 43.478 6.85 0.00 30.33 3.79
343 348 4.101741 AGGAGAGACGCCTAATTAAGCATT 59.898 41.667 6.85 0.00 30.33 3.56
344 349 4.816925 GGAGAGACGCCTAATTAAGCATTT 59.183 41.667 6.85 0.00 0.00 2.32
345 350 5.277538 GGAGAGACGCCTAATTAAGCATTTG 60.278 44.000 6.85 0.00 0.00 2.32
346 351 5.186198 AGAGACGCCTAATTAAGCATTTGT 58.814 37.500 6.85 0.00 0.00 2.83
347 352 5.294552 AGAGACGCCTAATTAAGCATTTGTC 59.705 40.000 6.85 5.54 0.00 3.18
348 353 4.335594 AGACGCCTAATTAAGCATTTGTCC 59.664 41.667 6.85 0.00 0.00 4.02
349 354 4.270008 ACGCCTAATTAAGCATTTGTCCT 58.730 39.130 6.85 0.00 0.00 3.85
350 355 4.096382 ACGCCTAATTAAGCATTTGTCCTG 59.904 41.667 6.85 0.00 0.00 3.86
351 356 4.096382 CGCCTAATTAAGCATTTGTCCTGT 59.904 41.667 6.85 0.00 0.00 4.00
352 357 5.295787 CGCCTAATTAAGCATTTGTCCTGTA 59.704 40.000 6.85 0.00 0.00 2.74
353 358 6.495706 GCCTAATTAAGCATTTGTCCTGTAC 58.504 40.000 1.02 0.00 0.00 2.90
354 359 6.094881 GCCTAATTAAGCATTTGTCCTGTACA 59.905 38.462 1.02 0.00 35.88 2.90
355 360 7.362574 GCCTAATTAAGCATTTGTCCTGTACAA 60.363 37.037 1.02 0.00 46.41 2.41
367 372 7.701539 TTGTCCTGTACAAATAAGCATCAAT 57.298 32.000 0.00 0.00 45.11 2.57
368 373 7.701539 TGTCCTGTACAAATAAGCATCAATT 57.298 32.000 0.00 0.00 34.29 2.32
369 374 7.537715 TGTCCTGTACAAATAAGCATCAATTG 58.462 34.615 0.00 0.00 34.29 2.32
370 375 7.176515 TGTCCTGTACAAATAAGCATCAATTGT 59.823 33.333 5.13 0.00 37.86 2.71
371 376 8.028938 GTCCTGTACAAATAAGCATCAATTGTT 58.971 33.333 5.13 0.00 35.89 2.83
372 377 9.237187 TCCTGTACAAATAAGCATCAATTGTTA 57.763 29.630 5.13 0.00 35.89 2.41
373 378 9.853555 CCTGTACAAATAAGCATCAATTGTTAA 57.146 29.630 5.13 0.00 35.89 2.01
399 404 7.786178 AAAAACCTGGTTTATTTCTTCAAGC 57.214 32.000 24.08 0.00 34.43 4.01
400 405 6.478512 AAACCTGGTTTATTTCTTCAAGCA 57.521 33.333 22.71 0.00 33.70 3.91
401 406 5.453567 ACCTGGTTTATTTCTTCAAGCAC 57.546 39.130 0.00 0.00 0.00 4.40
402 407 4.280929 ACCTGGTTTATTTCTTCAAGCACC 59.719 41.667 0.00 0.00 0.00 5.01
403 408 4.524328 CCTGGTTTATTTCTTCAAGCACCT 59.476 41.667 0.00 0.00 0.00 4.00
404 409 5.335976 CCTGGTTTATTTCTTCAAGCACCTC 60.336 44.000 0.00 0.00 0.00 3.85
405 410 5.385198 TGGTTTATTTCTTCAAGCACCTCT 58.615 37.500 0.00 0.00 0.00 3.69
406 411 5.473504 TGGTTTATTTCTTCAAGCACCTCTC 59.526 40.000 0.00 0.00 0.00 3.20
407 412 5.106118 GGTTTATTTCTTCAAGCACCTCTCC 60.106 44.000 0.00 0.00 0.00 3.71
408 413 5.505181 TTATTTCTTCAAGCACCTCTCCT 57.495 39.130 0.00 0.00 0.00 3.69
409 414 6.620877 TTATTTCTTCAAGCACCTCTCCTA 57.379 37.500 0.00 0.00 0.00 2.94
410 415 4.974645 TTTCTTCAAGCACCTCTCCTAA 57.025 40.909 0.00 0.00 0.00 2.69
411 416 4.543590 TTCTTCAAGCACCTCTCCTAAG 57.456 45.455 0.00 0.00 0.00 2.18
412 417 2.234908 TCTTCAAGCACCTCTCCTAAGC 59.765 50.000 0.00 0.00 0.00 3.09
413 418 1.644509 TCAAGCACCTCTCCTAAGCA 58.355 50.000 0.00 0.00 0.00 3.91
414 419 1.276421 TCAAGCACCTCTCCTAAGCAC 59.724 52.381 0.00 0.00 0.00 4.40
415 420 0.615850 AAGCACCTCTCCTAAGCACC 59.384 55.000 0.00 0.00 0.00 5.01
416 421 0.252467 AGCACCTCTCCTAAGCACCT 60.252 55.000 0.00 0.00 0.00 4.00
417 422 0.615850 GCACCTCTCCTAAGCACCTT 59.384 55.000 0.00 0.00 0.00 3.50
418 423 1.831736 GCACCTCTCCTAAGCACCTTA 59.168 52.381 0.00 0.00 0.00 2.69
419 424 2.418884 GCACCTCTCCTAAGCACCTTAC 60.419 54.545 0.00 0.00 0.00 2.34
420 425 2.832129 CACCTCTCCTAAGCACCTTACA 59.168 50.000 0.00 0.00 0.00 2.41
421 426 3.452627 CACCTCTCCTAAGCACCTTACAT 59.547 47.826 0.00 0.00 0.00 2.29
422 427 4.080863 CACCTCTCCTAAGCACCTTACATT 60.081 45.833 0.00 0.00 0.00 2.71
423 428 4.080863 ACCTCTCCTAAGCACCTTACATTG 60.081 45.833 0.00 0.00 0.00 2.82
424 429 4.080863 CCTCTCCTAAGCACCTTACATTGT 60.081 45.833 0.00 0.00 0.00 2.71
425 430 5.128827 CCTCTCCTAAGCACCTTACATTGTA 59.871 44.000 0.00 0.00 0.00 2.41
426 431 5.974108 TCTCCTAAGCACCTTACATTGTAC 58.026 41.667 0.00 0.00 0.00 2.90
427 432 5.482526 TCTCCTAAGCACCTTACATTGTACA 59.517 40.000 0.00 0.00 0.00 2.90
428 433 6.014070 TCTCCTAAGCACCTTACATTGTACAA 60.014 38.462 11.41 11.41 0.00 2.41
429 434 6.170506 TCCTAAGCACCTTACATTGTACAAG 58.829 40.000 14.65 8.70 0.00 3.16
430 435 5.354234 CCTAAGCACCTTACATTGTACAAGG 59.646 44.000 18.17 18.17 43.73 3.61
431 436 3.081804 AGCACCTTACATTGTACAAGGC 58.918 45.455 19.55 9.43 42.20 4.35
432 437 2.163613 GCACCTTACATTGTACAAGGCC 59.836 50.000 19.55 0.00 42.20 5.19
439 444 3.596214 ACATTGTACAAGGCCTTAGTCG 58.404 45.455 20.00 8.49 0.00 4.18
461 466 1.708680 GCTGCAAAAATGAACGACGAC 59.291 47.619 0.00 0.00 0.00 4.34
464 469 1.333435 GCAAAAATGAACGACGACGGT 60.333 47.619 12.58 4.46 44.28 4.83
493 498 2.642807 GGGGCAGGAAGCTATATACCAA 59.357 50.000 0.00 0.00 44.79 3.67
499 504 6.940298 GGCAGGAAGCTATATACCAAACATTA 59.060 38.462 0.00 0.00 44.79 1.90
516 521 8.256605 CCAAACATTATGTGGTTATCATTTGGA 58.743 33.333 11.88 0.00 34.89 3.53
550 555 2.424793 TCCCAACTACTCCCTTGGTTT 58.575 47.619 0.00 0.00 35.99 3.27
610 615 5.661056 ATCTACGGACTGAAATGAGTGAA 57.339 39.130 0.00 0.00 0.00 3.18
716 1097 3.275143 TGGACATTTTGTTGTCACGTCT 58.725 40.909 6.88 0.00 46.32 4.18
759 1140 5.695816 ACGTAGTTATCCTTTTGTTTGCGTA 59.304 36.000 0.00 0.00 37.78 4.42
765 1148 9.439500 AGTTATCCTTTTGTTTGCGTAGTATAA 57.561 29.630 0.00 0.00 0.00 0.98
807 1193 5.140177 GTGAGTTTTAATGTTGACAGCTCG 58.860 41.667 0.00 0.00 0.00 5.03
823 1209 1.217882 CTCGGCGAATACCCAATCAC 58.782 55.000 12.13 0.00 0.00 3.06
982 1385 1.130054 TTTCTCTGAGCCCAGCCACT 61.130 55.000 0.00 0.00 40.20 4.00
1065 1468 1.740332 TAATCCGCCGGATCGAGCAA 61.740 55.000 20.67 0.00 42.27 3.91
1237 1640 1.403972 CGTCGTAGAACGCTTCCTGC 61.404 60.000 0.00 0.00 42.21 4.85
1332 1768 0.501435 CCGACGAAGACAACGTGAAC 59.499 55.000 0.00 0.00 43.97 3.18
1391 1827 2.235650 TGATGGAGGTGAAGAAGCAGAG 59.764 50.000 0.00 0.00 0.00 3.35
1542 1990 4.996434 ACCGACGTCTCCGACCGT 62.996 66.667 14.70 0.00 37.88 4.83
1594 2057 1.376812 GTTGAAATCTCCCCGCCGT 60.377 57.895 0.00 0.00 0.00 5.68
1611 2077 2.286121 TCCCCGGCCCAGATCTTT 60.286 61.111 0.00 0.00 0.00 2.52
1614 2080 2.830370 CCGGCCCAGATCTTTGGC 60.830 66.667 20.34 20.34 44.59 4.52
1767 2241 3.787001 CCTCCGCCTCTGGGGTTC 61.787 72.222 0.00 0.00 44.70 3.62
1768 2242 3.787001 CTCCGCCTCTGGGGTTCC 61.787 72.222 0.00 0.00 44.70 3.62
1772 2246 3.412408 GCCTCTGGGGTTCCCCTC 61.412 72.222 25.20 7.88 44.67 4.30
1773 2247 2.692741 CCTCTGGGGTTCCCCTCC 60.693 72.222 25.20 2.37 44.67 4.30
1774 2248 3.083997 CTCTGGGGTTCCCCTCCG 61.084 72.222 25.20 14.58 44.67 4.63
1775 2249 4.733725 TCTGGGGTTCCCCTCCGG 62.734 72.222 25.20 13.68 44.67 5.14
1789 2263 3.252974 CCTCCGGGATAGATATGCAAC 57.747 52.381 0.00 0.00 33.58 4.17
1790 2264 2.567169 CCTCCGGGATAGATATGCAACA 59.433 50.000 0.00 0.00 33.58 3.33
1791 2265 3.368843 CCTCCGGGATAGATATGCAACAG 60.369 52.174 0.00 0.00 33.58 3.16
1792 2266 2.028112 TCCGGGATAGATATGCAACAGC 60.028 50.000 0.00 0.00 0.00 4.40
1793 2267 2.289631 CCGGGATAGATATGCAACAGCA 60.290 50.000 0.00 0.00 43.41 4.41
1794 2268 2.998670 CGGGATAGATATGCAACAGCAG 59.001 50.000 0.00 0.00 42.36 4.24
1795 2269 3.306294 CGGGATAGATATGCAACAGCAGA 60.306 47.826 0.00 0.00 42.36 4.26
1796 2270 4.622457 CGGGATAGATATGCAACAGCAGAT 60.622 45.833 0.00 0.00 42.42 2.90
1797 2271 4.634883 GGGATAGATATGCAACAGCAGATG 59.365 45.833 1.99 0.00 40.05 2.90
1798 2272 4.634883 GGATAGATATGCAACAGCAGATGG 59.365 45.833 1.99 0.00 40.05 3.51
1799 2273 3.572632 AGATATGCAACAGCAGATGGT 57.427 42.857 1.99 0.00 40.05 3.55
1857 2400 4.160736 CATGGATATGCAACAGCAGATG 57.839 45.455 0.00 0.00 40.05 2.90
1859 2402 1.268899 GGATATGCAACAGCAGATGGC 59.731 52.381 1.99 0.00 40.05 4.40
1871 2465 0.250166 CAGATGGCGATGGAGATGCA 60.250 55.000 0.00 0.00 0.00 3.96
1884 2478 1.153086 GATGCATCCGGCTCAGGTT 60.153 57.895 16.23 0.00 45.15 3.50
1885 2479 1.442526 GATGCATCCGGCTCAGGTTG 61.443 60.000 16.23 0.00 45.15 3.77
1896 2490 4.680237 CAGGTTGTCGCCGCTGGA 62.680 66.667 0.00 0.00 0.00 3.86
1996 2611 0.874390 CGTTGCCGGGATGGATATTG 59.126 55.000 2.18 0.00 42.00 1.90
1997 2612 1.542328 CGTTGCCGGGATGGATATTGA 60.542 52.381 2.18 0.00 42.00 2.57
1998 2613 2.795329 GTTGCCGGGATGGATATTGAT 58.205 47.619 2.18 0.00 42.00 2.57
2016 2631 5.700722 TTGATATGGAGCAGATGCAAATC 57.299 39.130 7.68 3.39 45.16 2.17
2022 2637 3.568430 TGGAGCAGATGCAAATCATGATC 59.432 43.478 9.06 0.00 45.16 2.92
2155 2776 1.292223 CCCAACGCCGAAGAAGAGA 59.708 57.895 0.00 0.00 0.00 3.10
2186 2807 0.736325 CGTGTCCATCGGTTCCAGTC 60.736 60.000 0.00 0.00 0.00 3.51
2192 2813 2.304470 TCCATCGGTTCCAGTCAAATCA 59.696 45.455 0.00 0.00 0.00 2.57
2193 2814 3.054434 TCCATCGGTTCCAGTCAAATCAT 60.054 43.478 0.00 0.00 0.00 2.45
2194 2815 3.696051 CCATCGGTTCCAGTCAAATCATT 59.304 43.478 0.00 0.00 0.00 2.57
2195 2816 4.881273 CCATCGGTTCCAGTCAAATCATTA 59.119 41.667 0.00 0.00 0.00 1.90
2196 2817 5.532406 CCATCGGTTCCAGTCAAATCATTAT 59.468 40.000 0.00 0.00 0.00 1.28
2242 2863 5.209818 TCAATCCTGTTTGTCGTCTAGTT 57.790 39.130 0.00 0.00 0.00 2.24
2243 2864 6.335471 TCAATCCTGTTTGTCGTCTAGTTA 57.665 37.500 0.00 0.00 0.00 2.24
2306 2930 8.299570 AGTTTCATCTTATGTCGAGCAAATTTT 58.700 29.630 0.00 0.00 0.00 1.82
2321 2945 9.061610 CGAGCAAATTTTATGTCGTTTCTTATT 57.938 29.630 0.00 0.00 0.00 1.40
2363 2987 6.475727 GCTAGATTTGAATTGTACTGTCGCTA 59.524 38.462 0.00 0.00 0.00 4.26
2368 2992 3.056821 TGAATTGTACTGTCGCTAGCTGT 60.057 43.478 13.93 8.71 0.00 4.40
2371 2995 0.992802 GTACTGTCGCTAGCTGTTGC 59.007 55.000 13.93 0.00 40.05 4.17
2420 3046 5.410746 CGCTGGCATCATTATACAAAGATCT 59.589 40.000 0.00 0.00 0.00 2.75
2421 3047 6.591448 CGCTGGCATCATTATACAAAGATCTA 59.409 38.462 0.00 0.00 0.00 1.98
2422 3048 7.412346 CGCTGGCATCATTATACAAAGATCTAC 60.412 40.741 0.00 0.00 0.00 2.59
2423 3049 7.388776 GCTGGCATCATTATACAAAGATCTACA 59.611 37.037 0.00 0.00 0.00 2.74
2424 3050 8.837788 TGGCATCATTATACAAAGATCTACAG 57.162 34.615 0.00 0.00 0.00 2.74
2698 3342 4.035675 GCCCTTGATCTCGATAACCTTTTG 59.964 45.833 0.00 0.00 0.00 2.44
2776 3430 6.019779 GTCTCAGTGACAAACAGACTCTAT 57.980 41.667 0.00 0.00 44.73 1.98
2805 3459 9.226606 CTTATTGTAACTTAAACATCTGGTGGA 57.773 33.333 0.00 0.00 0.00 4.02
2810 3464 7.942341 TGTAACTTAAACATCTGGTGGATTTCT 59.058 33.333 0.00 0.00 31.27 2.52
2868 3522 7.565680 ACTTTATAAATCACGTCTCAAGGGAT 58.434 34.615 0.00 0.00 0.00 3.85
2972 3630 0.325296 AGCCCTATCTGGTCCGTTCA 60.325 55.000 0.00 0.00 0.00 3.18
2992 3650 3.769844 TCATAGGAACCCTCTTCTCACAC 59.230 47.826 0.00 0.00 34.61 3.82
2993 3651 2.103153 AGGAACCCTCTTCTCACACA 57.897 50.000 0.00 0.00 0.00 3.72
2996 3654 0.398318 AACCCTCTTCTCACACAGCC 59.602 55.000 0.00 0.00 0.00 4.85
3000 3658 2.031012 CTTCTCACACAGCCGCCA 59.969 61.111 0.00 0.00 0.00 5.69
3004 3662 3.610619 CTCACACAGCCGCCATCCA 62.611 63.158 0.00 0.00 0.00 3.41
3022 3680 0.034089 CACCTCCCTTTGATGGACCC 60.034 60.000 0.00 0.00 0.00 4.46
3023 3681 1.214992 ACCTCCCTTTGATGGACCCC 61.215 60.000 0.00 0.00 0.00 4.95
3024 3682 1.224592 CTCCCTTTGATGGACCCCG 59.775 63.158 0.00 0.00 0.00 5.73
3046 3704 1.271379 ACTAGCGACGGACACATGAAA 59.729 47.619 0.00 0.00 0.00 2.69
3050 3708 3.123804 AGCGACGGACACATGAAATATC 58.876 45.455 0.00 0.00 0.00 1.63
3051 3709 2.863740 GCGACGGACACATGAAATATCA 59.136 45.455 0.00 0.00 40.57 2.15
3052 3710 3.308595 GCGACGGACACATGAAATATCAA 59.691 43.478 0.00 0.00 39.49 2.57
3053 3711 4.024893 GCGACGGACACATGAAATATCAAT 60.025 41.667 0.00 0.00 39.49 2.57
3054 3712 5.670097 CGACGGACACATGAAATATCAATC 58.330 41.667 0.00 0.00 39.49 2.67
3055 3713 5.463392 CGACGGACACATGAAATATCAATCT 59.537 40.000 0.00 0.00 39.49 2.40
3056 3714 6.562825 CGACGGACACATGAAATATCAATCTG 60.563 42.308 0.00 0.00 39.49 2.90
3057 3715 6.348498 ACGGACACATGAAATATCAATCTGA 58.652 36.000 0.00 0.00 39.49 3.27
3058 3716 6.823182 ACGGACACATGAAATATCAATCTGAA 59.177 34.615 0.00 0.00 39.49 3.02
3059 3717 7.128331 CGGACACATGAAATATCAATCTGAAC 58.872 38.462 0.00 0.00 39.49 3.18
3060 3718 7.420800 GGACACATGAAATATCAATCTGAACC 58.579 38.462 0.00 0.00 39.49 3.62
3061 3719 7.338800 ACACATGAAATATCAATCTGAACCC 57.661 36.000 0.00 0.00 39.49 4.11
3062 3720 6.891361 ACACATGAAATATCAATCTGAACCCA 59.109 34.615 0.00 0.00 39.49 4.51
3063 3721 7.148018 ACACATGAAATATCAATCTGAACCCAC 60.148 37.037 0.00 0.00 39.49 4.61
3064 3722 6.891361 ACATGAAATATCAATCTGAACCCACA 59.109 34.615 0.00 0.00 39.49 4.17
3065 3723 7.562454 ACATGAAATATCAATCTGAACCCACAT 59.438 33.333 0.00 0.00 39.49 3.21
3066 3724 7.572523 TGAAATATCAATCTGAACCCACATC 57.427 36.000 0.00 0.00 30.99 3.06
3067 3725 7.348815 TGAAATATCAATCTGAACCCACATCT 58.651 34.615 0.00 0.00 30.99 2.90
3068 3726 8.493607 TGAAATATCAATCTGAACCCACATCTA 58.506 33.333 0.00 0.00 30.99 1.98
3069 3727 8.682936 AAATATCAATCTGAACCCACATCTAC 57.317 34.615 0.00 0.00 0.00 2.59
3070 3728 4.123497 TCAATCTGAACCCACATCTACG 57.877 45.455 0.00 0.00 0.00 3.51
3071 3729 3.513912 TCAATCTGAACCCACATCTACGT 59.486 43.478 0.00 0.00 0.00 3.57
3072 3730 3.526931 ATCTGAACCCACATCTACGTG 57.473 47.619 0.00 0.00 36.61 4.49
3073 3731 1.067142 TCTGAACCCACATCTACGTGC 60.067 52.381 0.00 0.00 35.47 5.34
3074 3732 0.682292 TGAACCCACATCTACGTGCA 59.318 50.000 0.00 0.00 35.47 4.57
3075 3733 1.277842 TGAACCCACATCTACGTGCAT 59.722 47.619 0.00 0.00 35.47 3.96
3076 3734 2.498078 TGAACCCACATCTACGTGCATA 59.502 45.455 0.00 0.00 35.47 3.14
3077 3735 3.133901 TGAACCCACATCTACGTGCATAT 59.866 43.478 0.00 0.00 35.47 1.78
3078 3736 4.342665 TGAACCCACATCTACGTGCATATA 59.657 41.667 0.00 0.00 35.47 0.86
3079 3737 4.948341 ACCCACATCTACGTGCATATAA 57.052 40.909 0.00 0.00 35.47 0.98
3080 3738 5.483685 ACCCACATCTACGTGCATATAAT 57.516 39.130 0.00 0.00 35.47 1.28
3081 3739 5.237815 ACCCACATCTACGTGCATATAATG 58.762 41.667 0.00 0.00 35.47 1.90
3082 3740 5.221641 ACCCACATCTACGTGCATATAATGT 60.222 40.000 0.00 0.00 35.47 2.71
3083 3741 6.014925 ACCCACATCTACGTGCATATAATGTA 60.015 38.462 0.00 0.00 35.47 2.29
3084 3742 6.871492 CCCACATCTACGTGCATATAATGTAA 59.129 38.462 0.00 0.00 35.47 2.41
3085 3743 7.148639 CCCACATCTACGTGCATATAATGTAAC 60.149 40.741 0.00 0.00 35.47 2.50
3086 3744 7.598869 CCACATCTACGTGCATATAATGTAACT 59.401 37.037 0.00 0.00 35.47 2.24
3087 3745 9.620660 CACATCTACGTGCATATAATGTAACTA 57.379 33.333 0.00 0.00 0.00 2.24
3091 3749 9.135843 TCTACGTGCATATAATGTAACTATTGC 57.864 33.333 0.00 0.00 0.00 3.56
3092 3750 7.962964 ACGTGCATATAATGTAACTATTGCT 57.037 32.000 0.00 0.00 0.00 3.91
3093 3751 8.378172 ACGTGCATATAATGTAACTATTGCTT 57.622 30.769 0.00 0.00 0.00 3.91
3094 3752 8.836413 ACGTGCATATAATGTAACTATTGCTTT 58.164 29.630 0.00 0.00 0.00 3.51
3095 3753 9.663904 CGTGCATATAATGTAACTATTGCTTTT 57.336 29.630 0.00 0.00 0.00 2.27
3104 3762 7.598189 TGTAACTATTGCTTTTATGTACGCA 57.402 32.000 0.00 0.00 0.00 5.24
3105 3763 7.457868 TGTAACTATTGCTTTTATGTACGCAC 58.542 34.615 0.00 0.00 31.24 5.34
3106 3764 6.489127 AACTATTGCTTTTATGTACGCACA 57.511 33.333 0.00 0.00 39.52 4.57
3108 3766 6.486248 ACTATTGCTTTTATGTACGCACATG 58.514 36.000 11.63 0.00 45.17 3.21
3109 3767 5.559427 ATTGCTTTTATGTACGCACATGA 57.441 34.783 11.63 0.00 45.17 3.07
3110 3768 5.363979 TTGCTTTTATGTACGCACATGAA 57.636 34.783 11.63 6.70 45.17 2.57
3111 3769 5.559427 TGCTTTTATGTACGCACATGAAT 57.441 34.783 11.63 0.00 45.17 2.57
3112 3770 5.568482 TGCTTTTATGTACGCACATGAATC 58.432 37.500 11.63 5.56 45.17 2.52
3113 3771 5.353956 TGCTTTTATGTACGCACATGAATCT 59.646 36.000 11.63 0.00 45.17 2.40
3114 3772 5.904080 GCTTTTATGTACGCACATGAATCTC 59.096 40.000 11.63 0.00 45.17 2.75
3115 3773 5.635549 TTTATGTACGCACATGAATCTCG 57.364 39.130 11.63 0.00 45.17 4.04
3116 3774 2.931512 TGTACGCACATGAATCTCGA 57.068 45.000 0.00 0.00 0.00 4.04
3117 3775 3.224884 TGTACGCACATGAATCTCGAA 57.775 42.857 0.00 0.00 0.00 3.71
3118 3776 2.921121 TGTACGCACATGAATCTCGAAC 59.079 45.455 0.00 0.00 0.00 3.95
3119 3777 2.370281 ACGCACATGAATCTCGAACT 57.630 45.000 0.00 0.00 0.00 3.01
3120 3778 2.263077 ACGCACATGAATCTCGAACTC 58.737 47.619 0.00 0.00 0.00 3.01
3121 3779 2.094494 ACGCACATGAATCTCGAACTCT 60.094 45.455 0.00 0.00 0.00 3.24
3122 3780 2.926200 CGCACATGAATCTCGAACTCTT 59.074 45.455 0.00 0.00 0.00 2.85
3123 3781 3.000277 CGCACATGAATCTCGAACTCTTC 60.000 47.826 0.00 0.00 0.00 2.87
3150 3808 5.860648 TTTTCCTCTCCAATCTTAAGGGT 57.139 39.130 1.85 0.00 0.00 4.34
3151 3809 6.963117 TTTTCCTCTCCAATCTTAAGGGTA 57.037 37.500 1.85 0.00 0.00 3.69
3152 3810 6.561519 TTTCCTCTCCAATCTTAAGGGTAG 57.438 41.667 1.85 0.00 0.00 3.18
3153 3811 5.483174 TCCTCTCCAATCTTAAGGGTAGA 57.517 43.478 1.85 1.63 0.00 2.59
3154 3812 5.459505 TCCTCTCCAATCTTAAGGGTAGAG 58.540 45.833 1.85 9.61 0.00 2.43
3155 3813 5.195960 TCCTCTCCAATCTTAAGGGTAGAGA 59.804 44.000 17.40 15.19 32.46 3.10
3156 3814 5.538433 CCTCTCCAATCTTAAGGGTAGAGAG 59.462 48.000 22.95 22.95 43.61 3.20
3157 3815 4.896482 TCTCCAATCTTAAGGGTAGAGAGC 59.104 45.833 1.85 0.00 0.00 4.09
3158 3816 3.967987 TCCAATCTTAAGGGTAGAGAGCC 59.032 47.826 1.85 0.00 44.20 4.70
3159 3817 3.711704 CCAATCTTAAGGGTAGAGAGCCA 59.288 47.826 1.85 0.00 46.47 4.75
3160 3818 4.349342 CCAATCTTAAGGGTAGAGAGCCAT 59.651 45.833 1.85 0.00 46.47 4.40
3161 3819 5.544176 CCAATCTTAAGGGTAGAGAGCCATA 59.456 44.000 1.85 0.00 46.47 2.74
3162 3820 6.043243 CCAATCTTAAGGGTAGAGAGCCATAA 59.957 42.308 1.85 0.00 46.47 1.90
3163 3821 7.256835 CCAATCTTAAGGGTAGAGAGCCATAAT 60.257 40.741 1.85 0.00 46.47 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.251653 TACCTGGAGAGCTTGACGGT 60.252 55.000 0.00 0.00 0.00 4.83
35 36 4.827087 CTCGTGCGGATGGCTGCT 62.827 66.667 0.00 0.00 46.76 4.24
45 46 4.899239 GGGATGGGAGCTCGTGCG 62.899 72.222 7.83 0.00 45.42 5.34
53 54 1.284841 AAGGAGCTTGGGGATGGGAG 61.285 60.000 0.00 0.00 0.00 4.30
60 61 1.676967 GCTGTGAAGGAGCTTGGGG 60.677 63.158 0.00 0.00 33.37 4.96
62 63 1.239968 GGTGCTGTGAAGGAGCTTGG 61.240 60.000 0.00 0.00 37.35 3.61
64 65 0.036022 GAGGTGCTGTGAAGGAGCTT 59.964 55.000 0.50 0.00 38.06 3.74
121 122 2.046892 CACACGGAGAGCAAGGGG 60.047 66.667 0.00 0.00 0.00 4.79
126 127 1.285950 CGAGAACACACGGAGAGCA 59.714 57.895 0.00 0.00 0.00 4.26
177 182 1.671328 TCTCTCAGCGATCGAACGAAT 59.329 47.619 21.57 3.24 35.09 3.34
194 199 1.084370 CAACGTTCGGGCTGGATCTC 61.084 60.000 0.00 0.00 0.00 2.75
201 206 1.671054 CCATGTCAACGTTCGGGCT 60.671 57.895 0.00 0.00 0.00 5.19
251 256 1.202475 GCACCTCTCTAAGCACCTAGC 60.202 57.143 0.00 0.00 46.19 3.42
252 257 2.383855 AGCACCTCTCTAAGCACCTAG 58.616 52.381 0.00 0.00 0.00 3.02
253 258 2.534042 AGCACCTCTCTAAGCACCTA 57.466 50.000 0.00 0.00 0.00 3.08
254 259 1.650528 AAGCACCTCTCTAAGCACCT 58.349 50.000 0.00 0.00 0.00 4.00
255 260 3.611766 TTAAGCACCTCTCTAAGCACC 57.388 47.619 0.00 0.00 0.00 5.01
256 261 5.941948 TTTTTAAGCACCTCTCTAAGCAC 57.058 39.130 0.00 0.00 0.00 4.40
257 262 9.899661 TTATATTTTTAAGCACCTCTCTAAGCA 57.100 29.630 0.00 0.00 0.00 3.91
261 266 9.321562 CGGTTTATATTTTTAAGCACCTCTCTA 57.678 33.333 0.00 0.00 0.00 2.43
262 267 8.044908 TCGGTTTATATTTTTAAGCACCTCTCT 58.955 33.333 0.00 0.00 0.00 3.10
263 268 8.205131 TCGGTTTATATTTTTAAGCACCTCTC 57.795 34.615 0.00 0.00 0.00 3.20
264 269 7.827729 ACTCGGTTTATATTTTTAAGCACCTCT 59.172 33.333 0.00 0.00 0.00 3.69
265 270 7.982224 ACTCGGTTTATATTTTTAAGCACCTC 58.018 34.615 0.00 0.00 0.00 3.85
266 271 7.933215 ACTCGGTTTATATTTTTAAGCACCT 57.067 32.000 0.00 0.00 0.00 4.00
267 272 8.975410 AAACTCGGTTTATATTTTTAAGCACC 57.025 30.769 0.86 0.00 33.70 5.01
287 292 3.378427 ACACTGGTGCTTGAGAAAAACTC 59.622 43.478 0.17 0.00 45.11 3.01
288 293 3.356290 ACACTGGTGCTTGAGAAAAACT 58.644 40.909 0.17 0.00 0.00 2.66
289 294 3.782889 ACACTGGTGCTTGAGAAAAAC 57.217 42.857 0.17 0.00 0.00 2.43
290 295 4.799564 AAACACTGGTGCTTGAGAAAAA 57.200 36.364 0.17 0.00 0.00 1.94
291 296 6.463995 AATAAACACTGGTGCTTGAGAAAA 57.536 33.333 0.17 0.00 0.00 2.29
292 297 6.321181 AGAAATAAACACTGGTGCTTGAGAAA 59.679 34.615 0.17 0.00 0.00 2.52
293 298 5.827797 AGAAATAAACACTGGTGCTTGAGAA 59.172 36.000 0.17 0.00 0.00 2.87
294 299 5.376625 AGAAATAAACACTGGTGCTTGAGA 58.623 37.500 0.17 0.00 0.00 3.27
295 300 5.695851 AGAAATAAACACTGGTGCTTGAG 57.304 39.130 0.17 0.00 0.00 3.02
296 301 7.552687 CCTATAGAAATAAACACTGGTGCTTGA 59.447 37.037 0.00 0.00 0.00 3.02
297 302 7.552687 TCCTATAGAAATAAACACTGGTGCTTG 59.447 37.037 0.00 0.00 0.00 4.01
298 303 7.630082 TCCTATAGAAATAAACACTGGTGCTT 58.370 34.615 0.00 0.00 0.00 3.91
299 304 7.125811 TCTCCTATAGAAATAAACACTGGTGCT 59.874 37.037 0.00 0.00 0.00 4.40
300 305 7.272978 TCTCCTATAGAAATAAACACTGGTGC 58.727 38.462 0.00 0.00 0.00 5.01
301 306 8.696374 TCTCTCCTATAGAAATAAACACTGGTG 58.304 37.037 0.00 0.00 32.46 4.17
302 307 8.697292 GTCTCTCCTATAGAAATAAACACTGGT 58.303 37.037 0.00 0.00 32.46 4.00
303 308 7.863375 CGTCTCTCCTATAGAAATAAACACTGG 59.137 40.741 0.00 0.00 32.46 4.00
304 309 7.380065 GCGTCTCTCCTATAGAAATAAACACTG 59.620 40.741 0.00 0.00 32.46 3.66
305 310 7.427214 GCGTCTCTCCTATAGAAATAAACACT 58.573 38.462 0.00 0.00 32.46 3.55
306 311 6.641723 GGCGTCTCTCCTATAGAAATAAACAC 59.358 42.308 0.00 0.00 32.46 3.32
307 312 6.550108 AGGCGTCTCTCCTATAGAAATAAACA 59.450 38.462 0.00 0.00 32.46 2.83
308 313 6.983984 AGGCGTCTCTCCTATAGAAATAAAC 58.016 40.000 0.00 0.00 32.46 2.01
309 314 8.701908 TTAGGCGTCTCTCCTATAGAAATAAA 57.298 34.615 0.00 0.00 36.20 1.40
310 315 8.880991 ATTAGGCGTCTCTCCTATAGAAATAA 57.119 34.615 0.00 0.00 36.20 1.40
311 316 8.880991 AATTAGGCGTCTCTCCTATAGAAATA 57.119 34.615 0.00 0.00 36.20 1.40
312 317 7.784470 AATTAGGCGTCTCTCCTATAGAAAT 57.216 36.000 0.00 0.00 36.20 2.17
313 318 8.701908 TTAATTAGGCGTCTCTCCTATAGAAA 57.298 34.615 0.00 0.00 36.20 2.52
314 319 7.094291 GCTTAATTAGGCGTCTCTCCTATAGAA 60.094 40.741 3.59 0.00 36.20 2.10
315 320 6.374894 GCTTAATTAGGCGTCTCTCCTATAGA 59.625 42.308 3.59 0.00 36.20 1.98
316 321 6.151312 TGCTTAATTAGGCGTCTCTCCTATAG 59.849 42.308 14.11 0.00 36.20 1.31
317 322 6.008331 TGCTTAATTAGGCGTCTCTCCTATA 58.992 40.000 14.11 0.00 36.20 1.31
318 323 4.833380 TGCTTAATTAGGCGTCTCTCCTAT 59.167 41.667 14.11 0.00 36.20 2.57
319 324 4.212716 TGCTTAATTAGGCGTCTCTCCTA 58.787 43.478 14.11 0.00 35.21 2.94
320 325 3.031736 TGCTTAATTAGGCGTCTCTCCT 58.968 45.455 14.11 0.00 37.72 3.69
321 326 3.454371 TGCTTAATTAGGCGTCTCTCC 57.546 47.619 14.11 0.00 0.00 3.71
322 327 5.294552 ACAAATGCTTAATTAGGCGTCTCTC 59.705 40.000 14.01 0.00 0.00 3.20
323 328 5.186198 ACAAATGCTTAATTAGGCGTCTCT 58.814 37.500 14.01 0.00 0.00 3.10
324 329 5.485662 ACAAATGCTTAATTAGGCGTCTC 57.514 39.130 14.01 0.00 0.00 3.36
325 330 4.335594 GGACAAATGCTTAATTAGGCGTCT 59.664 41.667 14.01 0.00 0.00 4.18
326 331 4.335594 AGGACAAATGCTTAATTAGGCGTC 59.664 41.667 14.01 13.66 0.00 5.19
327 332 4.096382 CAGGACAAATGCTTAATTAGGCGT 59.904 41.667 14.11 11.37 0.00 5.68
328 333 4.096382 ACAGGACAAATGCTTAATTAGGCG 59.904 41.667 14.11 3.35 0.00 5.52
329 334 5.582689 ACAGGACAAATGCTTAATTAGGC 57.417 39.130 12.39 12.39 0.00 3.93
330 335 7.624360 TGTACAGGACAAATGCTTAATTAGG 57.376 36.000 0.00 0.00 34.15 2.69
343 348 7.701539 ATTGATGCTTATTTGTACAGGACAA 57.298 32.000 0.00 0.00 46.56 3.18
344 349 7.176515 ACAATTGATGCTTATTTGTACAGGACA 59.823 33.333 13.59 0.00 35.78 4.02
345 350 7.538575 ACAATTGATGCTTATTTGTACAGGAC 58.461 34.615 13.59 0.00 0.00 3.85
346 351 7.701539 ACAATTGATGCTTATTTGTACAGGA 57.298 32.000 13.59 0.00 0.00 3.86
347 352 9.853555 TTAACAATTGATGCTTATTTGTACAGG 57.146 29.630 13.59 0.00 30.76 4.00
375 380 7.279981 GTGCTTGAAGAAATAAACCAGGTTTTT 59.720 33.333 22.95 12.48 37.01 1.94
376 381 6.761242 GTGCTTGAAGAAATAAACCAGGTTTT 59.239 34.615 22.95 5.09 37.01 2.43
377 382 6.280643 GTGCTTGAAGAAATAAACCAGGTTT 58.719 36.000 21.55 21.55 39.24 3.27
378 383 5.221441 GGTGCTTGAAGAAATAAACCAGGTT 60.221 40.000 0.00 0.00 0.00 3.50
379 384 4.280929 GGTGCTTGAAGAAATAAACCAGGT 59.719 41.667 0.00 0.00 0.00 4.00
380 385 4.524328 AGGTGCTTGAAGAAATAAACCAGG 59.476 41.667 0.00 0.00 0.00 4.45
381 386 5.474876 AGAGGTGCTTGAAGAAATAAACCAG 59.525 40.000 0.00 0.00 0.00 4.00
382 387 5.385198 AGAGGTGCTTGAAGAAATAAACCA 58.615 37.500 0.00 0.00 0.00 3.67
383 388 5.106118 GGAGAGGTGCTTGAAGAAATAAACC 60.106 44.000 0.00 0.00 0.00 3.27
384 389 5.707764 AGGAGAGGTGCTTGAAGAAATAAAC 59.292 40.000 0.00 0.00 0.00 2.01
385 390 5.880901 AGGAGAGGTGCTTGAAGAAATAAA 58.119 37.500 0.00 0.00 0.00 1.40
386 391 5.505181 AGGAGAGGTGCTTGAAGAAATAA 57.495 39.130 0.00 0.00 0.00 1.40
387 392 6.620877 TTAGGAGAGGTGCTTGAAGAAATA 57.379 37.500 0.00 0.00 0.00 1.40
388 393 5.495640 CTTAGGAGAGGTGCTTGAAGAAAT 58.504 41.667 0.00 0.00 0.00 2.17
389 394 4.804261 GCTTAGGAGAGGTGCTTGAAGAAA 60.804 45.833 0.00 0.00 0.00 2.52
390 395 3.307059 GCTTAGGAGAGGTGCTTGAAGAA 60.307 47.826 0.00 0.00 0.00 2.52
391 396 2.234908 GCTTAGGAGAGGTGCTTGAAGA 59.765 50.000 0.00 0.00 0.00 2.87
392 397 2.027745 TGCTTAGGAGAGGTGCTTGAAG 60.028 50.000 0.00 0.00 0.00 3.02
393 398 1.977854 TGCTTAGGAGAGGTGCTTGAA 59.022 47.619 0.00 0.00 0.00 2.69
394 399 1.276421 GTGCTTAGGAGAGGTGCTTGA 59.724 52.381 0.00 0.00 0.00 3.02
395 400 1.677217 GGTGCTTAGGAGAGGTGCTTG 60.677 57.143 0.00 0.00 0.00 4.01
396 401 0.615850 GGTGCTTAGGAGAGGTGCTT 59.384 55.000 0.00 0.00 0.00 3.91
397 402 0.252467 AGGTGCTTAGGAGAGGTGCT 60.252 55.000 0.00 0.00 0.00 4.40
398 403 0.615850 AAGGTGCTTAGGAGAGGTGC 59.384 55.000 0.00 0.00 0.00 5.01
399 404 2.832129 TGTAAGGTGCTTAGGAGAGGTG 59.168 50.000 0.00 0.00 0.00 4.00
400 405 3.185880 TGTAAGGTGCTTAGGAGAGGT 57.814 47.619 0.00 0.00 0.00 3.85
401 406 4.080863 ACAATGTAAGGTGCTTAGGAGAGG 60.081 45.833 0.00 0.00 0.00 3.69
402 407 5.091261 ACAATGTAAGGTGCTTAGGAGAG 57.909 43.478 0.00 0.00 0.00 3.20
403 408 5.482526 TGTACAATGTAAGGTGCTTAGGAGA 59.517 40.000 0.00 0.00 0.00 3.71
404 409 5.730550 TGTACAATGTAAGGTGCTTAGGAG 58.269 41.667 0.00 0.00 0.00 3.69
405 410 5.748670 TGTACAATGTAAGGTGCTTAGGA 57.251 39.130 0.00 0.00 0.00 2.94
406 411 5.354234 CCTTGTACAATGTAAGGTGCTTAGG 59.646 44.000 9.13 0.00 36.94 2.69
407 412 5.163754 GCCTTGTACAATGTAAGGTGCTTAG 60.164 44.000 9.13 0.00 42.30 2.18
408 413 4.698304 GCCTTGTACAATGTAAGGTGCTTA 59.302 41.667 9.13 0.00 42.30 3.09
409 414 3.506067 GCCTTGTACAATGTAAGGTGCTT 59.494 43.478 9.13 0.00 42.30 3.91
410 415 3.081804 GCCTTGTACAATGTAAGGTGCT 58.918 45.455 9.13 0.00 42.30 4.40
411 416 2.163613 GGCCTTGTACAATGTAAGGTGC 59.836 50.000 9.13 7.10 42.30 5.01
412 417 3.686016 AGGCCTTGTACAATGTAAGGTG 58.314 45.455 9.13 0.00 42.30 4.00
413 418 4.382386 AAGGCCTTGTACAATGTAAGGT 57.618 40.909 19.73 0.00 42.30 3.50
414 419 5.497474 ACTAAGGCCTTGTACAATGTAAGG 58.503 41.667 28.77 9.92 43.00 2.69
415 420 5.291128 CGACTAAGGCCTTGTACAATGTAAG 59.709 44.000 28.77 15.03 0.00 2.34
416 421 5.172934 CGACTAAGGCCTTGTACAATGTAA 58.827 41.667 28.77 2.40 0.00 2.41
417 422 4.221262 ACGACTAAGGCCTTGTACAATGTA 59.779 41.667 28.77 3.22 0.00 2.29
418 423 3.007614 ACGACTAAGGCCTTGTACAATGT 59.992 43.478 28.77 13.50 0.00 2.71
419 424 3.370978 CACGACTAAGGCCTTGTACAATG 59.629 47.826 28.77 14.55 0.00 2.82
420 425 3.596214 CACGACTAAGGCCTTGTACAAT 58.404 45.455 28.77 6.21 0.00 2.71
421 426 2.868839 GCACGACTAAGGCCTTGTACAA 60.869 50.000 28.77 8.28 0.00 2.41
422 427 1.337447 GCACGACTAAGGCCTTGTACA 60.337 52.381 28.77 6.91 0.00 2.90
423 428 1.067071 AGCACGACTAAGGCCTTGTAC 60.067 52.381 28.77 16.36 0.00 2.90
424 429 1.067142 CAGCACGACTAAGGCCTTGTA 60.067 52.381 28.77 8.15 0.00 2.41
425 430 0.320771 CAGCACGACTAAGGCCTTGT 60.321 55.000 28.77 22.17 0.00 3.16
426 431 1.639298 GCAGCACGACTAAGGCCTTG 61.639 60.000 28.77 19.17 0.00 3.61
427 432 1.376037 GCAGCACGACTAAGGCCTT 60.376 57.895 24.18 24.18 0.00 4.35
428 433 2.111999 TTGCAGCACGACTAAGGCCT 62.112 55.000 0.00 0.00 0.00 5.19
429 434 1.234615 TTTGCAGCACGACTAAGGCC 61.235 55.000 0.00 0.00 0.00 5.19
430 435 0.591170 TTTTGCAGCACGACTAAGGC 59.409 50.000 0.00 0.00 0.00 4.35
431 436 3.058293 TCATTTTTGCAGCACGACTAAGG 60.058 43.478 0.00 0.00 0.00 2.69
432 437 4.145876 TCATTTTTGCAGCACGACTAAG 57.854 40.909 0.00 0.00 0.00 2.18
439 444 1.447938 CGTCGTTCATTTTTGCAGCAC 59.552 47.619 0.00 0.00 0.00 4.40
464 469 3.551496 CTTCCTGCCCCGAACAGCA 62.551 63.158 0.00 0.00 37.46 4.41
477 482 9.507329 CACATAATGTTTGGTATATAGCTTCCT 57.493 33.333 12.87 0.00 0.00 3.36
478 483 8.730680 CCACATAATGTTTGGTATATAGCTTCC 58.269 37.037 12.87 0.00 0.00 3.46
493 498 9.874205 CTTTCCAAATGATAACCACATAATGTT 57.126 29.630 0.00 0.00 0.00 2.71
583 588 7.036220 CACTCATTTCAGTCCGTAGATAGTTT 58.964 38.462 0.00 0.00 0.00 2.66
590 595 6.019479 GCTTATTCACTCATTTCAGTCCGTAG 60.019 42.308 0.00 0.00 0.00 3.51
674 1054 4.142315 CCAAGCAATGTACTCCTTCCATTG 60.142 45.833 7.12 7.12 45.15 2.82
759 1140 6.402550 CGCGTGGGATAACTACGTATTATACT 60.403 42.308 0.00 0.00 39.79 2.12
765 1148 1.949525 ACGCGTGGGATAACTACGTAT 59.050 47.619 12.93 0.00 39.79 3.06
807 1193 2.808543 GAGATGTGATTGGGTATTCGCC 59.191 50.000 0.00 0.00 0.00 5.54
823 1209 9.438228 GCTATGATATTGATATCCCATGAGATG 57.562 37.037 0.00 0.00 38.66 2.90
837 1223 8.432359 CGCGTACAATAAAAGCTATGATATTGA 58.568 33.333 19.30 7.57 37.75 2.57
838 1224 7.688167 CCGCGTACAATAAAAGCTATGATATTG 59.312 37.037 4.92 14.31 40.11 1.90
839 1225 7.623506 GCCGCGTACAATAAAAGCTATGATATT 60.624 37.037 4.92 0.00 0.00 1.28
840 1226 6.183360 GCCGCGTACAATAAAAGCTATGATAT 60.183 38.462 4.92 0.00 0.00 1.63
1065 1468 3.011517 ACTTGCCGGGCATCCTCT 61.012 61.111 24.49 0.39 38.76 3.69
1101 1504 0.895559 CCTTGTTGAAGAGCCCCACC 60.896 60.000 0.00 0.00 0.00 4.61
1269 1672 2.573340 GCCAGGAAACGGCCATTG 59.427 61.111 2.24 0.00 41.96 2.82
1270 1673 3.061848 CGCCAGGAAACGGCCATT 61.062 61.111 2.24 0.00 43.93 3.16
1391 1827 3.093278 CCTTGTCGATGCGCTTCC 58.907 61.111 16.74 5.31 0.00 3.46
1508 1956 2.631062 TCGGTCTTTACCTTGAGAAGCA 59.369 45.455 0.00 0.00 44.35 3.91
1542 1990 1.707989 TCCAATAGAACCTGGTTGGCA 59.292 47.619 18.42 1.67 40.64 4.92
1594 2057 2.286121 AAAGATCTGGGCCGGGGA 60.286 61.111 13.58 4.19 0.00 4.81
1611 2077 2.033911 TCAAAGATGCTGCCGCCA 59.966 55.556 0.00 0.00 34.43 5.69
1614 2080 0.095935 CGAACTCAAAGATGCTGCCG 59.904 55.000 0.00 0.00 0.00 5.69
1750 2224 3.787001 GAACCCCAGAGGCGGAGG 61.787 72.222 0.00 0.00 40.58 4.30
1751 2225 3.787001 GGAACCCCAGAGGCGGAG 61.787 72.222 0.00 0.00 40.58 4.63
1769 2243 6.946173 GCTGTTGCATATCTATCCCGGAGG 62.946 54.167 0.73 0.00 43.86 4.30
1770 2244 3.854666 CTGTTGCATATCTATCCCGGAG 58.145 50.000 0.73 0.00 0.00 4.63
1771 2245 2.028112 GCTGTTGCATATCTATCCCGGA 60.028 50.000 0.73 0.00 39.41 5.14
1772 2246 2.289631 TGCTGTTGCATATCTATCCCGG 60.290 50.000 0.00 0.00 45.31 5.73
1773 2247 3.044235 TGCTGTTGCATATCTATCCCG 57.956 47.619 0.00 0.00 45.31 5.14
1792 2266 1.381928 GGCATGTCCAGCACCATCTG 61.382 60.000 0.00 0.00 34.01 2.90
1793 2267 1.077212 GGCATGTCCAGCACCATCT 60.077 57.895 0.00 0.00 34.01 2.90
1794 2268 1.077212 AGGCATGTCCAGCACCATC 60.077 57.895 8.58 0.00 37.29 3.51
1795 2269 1.077212 GAGGCATGTCCAGCACCAT 60.077 57.895 8.58 0.00 37.29 3.55
1796 2270 2.352422 GAGGCATGTCCAGCACCA 59.648 61.111 8.58 0.00 37.29 4.17
1797 2271 2.439156 GGAGGCATGTCCAGCACC 60.439 66.667 8.58 3.58 36.51 5.01
1798 2272 2.821366 CGGAGGCATGTCCAGCAC 60.821 66.667 8.58 0.00 36.23 4.40
1799 2273 4.100084 CCGGAGGCATGTCCAGCA 62.100 66.667 0.00 0.00 46.14 4.41
1857 2400 2.031516 CGGATGCATCTCCATCGCC 61.032 63.158 25.28 6.69 41.95 5.54
1859 2402 2.031516 GCCGGATGCATCTCCATCG 61.032 63.158 25.28 18.76 41.95 3.84
1871 2465 2.579201 CGACAACCTGAGCCGGAT 59.421 61.111 5.05 0.00 0.00 4.18
1885 2479 2.088674 ATATCCACTCCAGCGGCGAC 62.089 60.000 12.98 1.23 0.00 5.19
1979 2594 4.525996 CATATCAATATCCATCCCGGCAA 58.474 43.478 0.00 0.00 33.14 4.52
1996 2611 5.414765 TCATGATTTGCATCTGCTCCATATC 59.585 40.000 3.53 1.04 42.66 1.63
1997 2612 5.321927 TCATGATTTGCATCTGCTCCATAT 58.678 37.500 3.53 0.00 42.66 1.78
1998 2613 4.721132 TCATGATTTGCATCTGCTCCATA 58.279 39.130 3.53 0.00 42.66 2.74
2155 2776 3.430374 CGATGGACACGGGTTTAGATCTT 60.430 47.826 0.00 0.00 0.00 2.40
2186 2807 8.238631 TCGTCCATGCATGAATATAATGATTTG 58.761 33.333 28.31 5.90 0.00 2.32
2192 2813 9.102757 GAACTATCGTCCATGCATGAATATAAT 57.897 33.333 28.31 14.49 0.00 1.28
2193 2814 7.549134 GGAACTATCGTCCATGCATGAATATAA 59.451 37.037 28.31 8.41 0.00 0.98
2194 2815 7.041721 GGAACTATCGTCCATGCATGAATATA 58.958 38.462 28.31 16.63 0.00 0.86
2195 2816 5.877012 GGAACTATCGTCCATGCATGAATAT 59.123 40.000 28.31 16.41 0.00 1.28
2196 2817 5.012046 AGGAACTATCGTCCATGCATGAATA 59.988 40.000 28.31 16.62 36.02 1.75
2345 2969 3.926527 CAGCTAGCGACAGTACAATTCAA 59.073 43.478 9.55 0.00 0.00 2.69
2396 3020 5.410746 AGATCTTTGTATAATGATGCCAGCG 59.589 40.000 5.49 0.00 32.61 5.18
2420 3046 6.264292 ACACCAAAGATTTTGCATGTACTGTA 59.736 34.615 0.00 0.00 0.00 2.74
2421 3047 5.068987 ACACCAAAGATTTTGCATGTACTGT 59.931 36.000 0.00 0.00 0.00 3.55
2422 3048 5.531634 ACACCAAAGATTTTGCATGTACTG 58.468 37.500 0.00 0.00 0.00 2.74
2423 3049 5.789643 ACACCAAAGATTTTGCATGTACT 57.210 34.783 0.00 0.00 0.00 2.73
2424 3050 6.257630 ACAAACACCAAAGATTTTGCATGTAC 59.742 34.615 0.00 0.00 33.13 2.90
2584 3228 5.961272 TCTCTTGTTATCTCGTATTGTGCA 58.039 37.500 0.00 0.00 0.00 4.57
2653 3297 5.780793 GGCCTATATTTTCTACTCCCTCTGA 59.219 44.000 0.00 0.00 0.00 3.27
2672 3316 2.897969 GGTTATCGAGATCAAGGGCCTA 59.102 50.000 6.41 0.00 0.00 3.93
2733 3377 4.141251 AGACCCACCAGATGTTTAAGTTGT 60.141 41.667 0.00 0.00 0.00 3.32
2784 3438 7.942341 AGAAATCCACCAGATGTTTAAGTTACA 59.058 33.333 0.00 0.00 34.56 2.41
2805 3459 6.262944 TGTTTGTCATGTGTTGAGCTAGAAAT 59.737 34.615 0.00 0.00 34.17 2.17
2810 3464 3.247411 CGTGTTTGTCATGTGTTGAGCTA 59.753 43.478 0.00 0.00 34.17 3.32
2876 3530 0.914417 TCCCTTTCTCTGCGGGGATT 60.914 55.000 0.00 0.00 42.43 3.01
2877 3531 0.914417 TTCCCTTTCTCTGCGGGGAT 60.914 55.000 0.00 0.00 46.02 3.85
2972 3630 3.772025 CTGTGTGAGAAGAGGGTTCCTAT 59.228 47.826 0.00 0.00 31.76 2.57
2981 3639 1.739562 GGCGGCTGTGTGAGAAGAG 60.740 63.158 0.00 0.00 0.00 2.85
2992 3650 4.864334 GGAGGTGGATGGCGGCTG 62.864 72.222 11.43 0.00 0.00 4.85
2996 3654 1.750399 CAAAGGGAGGTGGATGGCG 60.750 63.158 0.00 0.00 0.00 5.69
3000 3658 1.566231 GTCCATCAAAGGGAGGTGGAT 59.434 52.381 0.00 0.00 40.72 3.41
3004 3662 1.214992 GGGGTCCATCAAAGGGAGGT 61.215 60.000 0.00 0.00 34.44 3.85
3024 3682 1.153823 ATGTGTCCGTCGCTAGTGC 60.154 57.895 0.00 0.00 0.00 4.40
3046 3704 6.042093 ACGTAGATGTGGGTTCAGATTGATAT 59.958 38.462 0.00 0.00 0.00 1.63
3050 3708 3.618594 CACGTAGATGTGGGTTCAGATTG 59.381 47.826 0.00 0.00 36.20 2.67
3051 3709 3.861840 CACGTAGATGTGGGTTCAGATT 58.138 45.455 0.00 0.00 36.20 2.40
3052 3710 2.418746 GCACGTAGATGTGGGTTCAGAT 60.419 50.000 4.13 0.00 40.26 2.90
3053 3711 1.067142 GCACGTAGATGTGGGTTCAGA 60.067 52.381 4.13 0.00 40.26 3.27
3054 3712 1.337728 TGCACGTAGATGTGGGTTCAG 60.338 52.381 4.13 0.00 40.26 3.02
3055 3713 0.682292 TGCACGTAGATGTGGGTTCA 59.318 50.000 4.13 0.00 40.26 3.18
3056 3714 2.024176 ATGCACGTAGATGTGGGTTC 57.976 50.000 4.13 0.00 40.26 3.62
3057 3715 3.838244 ATATGCACGTAGATGTGGGTT 57.162 42.857 4.13 0.00 40.26 4.11
3058 3716 4.948341 TTATATGCACGTAGATGTGGGT 57.052 40.909 4.13 0.00 40.26 4.51
3059 3717 5.237815 ACATTATATGCACGTAGATGTGGG 58.762 41.667 4.13 0.00 40.26 4.61
3060 3718 7.598869 AGTTACATTATATGCACGTAGATGTGG 59.401 37.037 12.23 0.00 40.26 4.17
3061 3719 8.520835 AGTTACATTATATGCACGTAGATGTG 57.479 34.615 12.23 0.00 42.81 3.21
3065 3723 9.135843 GCAATAGTTACATTATATGCACGTAGA 57.864 33.333 0.00 0.00 0.00 2.59
3066 3724 9.140286 AGCAATAGTTACATTATATGCACGTAG 57.860 33.333 0.00 0.00 0.00 3.51
3067 3725 9.483916 AAGCAATAGTTACATTATATGCACGTA 57.516 29.630 0.00 0.00 0.00 3.57
3068 3726 7.962964 AGCAATAGTTACATTATATGCACGT 57.037 32.000 0.00 0.00 0.00 4.49
3069 3727 9.663904 AAAAGCAATAGTTACATTATATGCACG 57.336 29.630 0.00 0.00 0.00 5.34
3078 3736 8.670135 TGCGTACATAAAAGCAATAGTTACATT 58.330 29.630 0.00 0.00 36.60 2.71
3079 3737 8.120465 GTGCGTACATAAAAGCAATAGTTACAT 58.880 33.333 0.00 0.00 41.56 2.29
3080 3738 7.117956 TGTGCGTACATAAAAGCAATAGTTACA 59.882 33.333 0.82 0.00 41.56 2.41
3081 3739 7.457868 TGTGCGTACATAAAAGCAATAGTTAC 58.542 34.615 0.82 0.00 41.56 2.50
3082 3740 7.598189 TGTGCGTACATAAAAGCAATAGTTA 57.402 32.000 0.82 0.00 41.56 2.24
3083 3741 6.489127 TGTGCGTACATAAAAGCAATAGTT 57.511 33.333 0.82 0.00 41.56 2.24
3084 3742 6.315144 TCATGTGCGTACATAAAAGCAATAGT 59.685 34.615 19.02 0.00 45.53 2.12
3085 3743 6.714492 TCATGTGCGTACATAAAAGCAATAG 58.286 36.000 19.02 3.11 45.53 1.73
3086 3744 6.670077 TCATGTGCGTACATAAAAGCAATA 57.330 33.333 19.02 0.00 45.53 1.90
3087 3745 5.559427 TCATGTGCGTACATAAAAGCAAT 57.441 34.783 19.02 0.00 45.53 3.56
3088 3746 5.363979 TTCATGTGCGTACATAAAAGCAA 57.636 34.783 19.02 3.11 45.53 3.91
3089 3747 5.353956 AGATTCATGTGCGTACATAAAAGCA 59.646 36.000 19.02 0.00 45.53 3.91
3090 3748 5.810525 AGATTCATGTGCGTACATAAAAGC 58.189 37.500 19.02 17.29 45.53 3.51
3091 3749 6.019881 TCGAGATTCATGTGCGTACATAAAAG 60.020 38.462 19.02 7.06 45.53 2.27
3092 3750 5.808030 TCGAGATTCATGTGCGTACATAAAA 59.192 36.000 19.02 15.70 45.53 1.52
3093 3751 5.344884 TCGAGATTCATGTGCGTACATAAA 58.655 37.500 19.02 11.90 45.53 1.40
3094 3752 4.927422 TCGAGATTCATGTGCGTACATAA 58.073 39.130 19.02 13.32 45.53 1.90
3095 3753 4.561735 TCGAGATTCATGTGCGTACATA 57.438 40.909 19.02 5.15 45.53 2.29
3097 3755 2.921121 GTTCGAGATTCATGTGCGTACA 59.079 45.455 9.28 9.28 41.89 2.90
3098 3756 3.179830 AGTTCGAGATTCATGTGCGTAC 58.820 45.455 0.00 0.00 0.00 3.67
3099 3757 3.128764 AGAGTTCGAGATTCATGTGCGTA 59.871 43.478 0.00 0.00 0.00 4.42
3100 3758 2.094494 AGAGTTCGAGATTCATGTGCGT 60.094 45.455 0.00 0.00 0.00 5.24
3101 3759 2.534298 AGAGTTCGAGATTCATGTGCG 58.466 47.619 0.00 0.00 0.00 5.34
3102 3760 4.513000 GAAGAGTTCGAGATTCATGTGC 57.487 45.455 0.00 0.00 0.00 4.57
3127 3785 6.214177 ACCCTTAAGATTGGAGAGGAAAAA 57.786 37.500 3.36 0.00 0.00 1.94
3128 3786 5.860648 ACCCTTAAGATTGGAGAGGAAAA 57.139 39.130 3.36 0.00 0.00 2.29
3129 3787 6.269194 TCTACCCTTAAGATTGGAGAGGAAA 58.731 40.000 3.36 0.00 0.00 3.13
3130 3788 5.850278 TCTACCCTTAAGATTGGAGAGGAA 58.150 41.667 3.36 0.00 0.00 3.36
3131 3789 5.195960 TCTCTACCCTTAAGATTGGAGAGGA 59.804 44.000 20.00 10.34 31.97 3.71
3132 3790 5.459505 TCTCTACCCTTAAGATTGGAGAGG 58.540 45.833 20.00 8.21 31.97 3.69
3133 3791 5.010617 GCTCTCTACCCTTAAGATTGGAGAG 59.989 48.000 25.97 25.97 44.58 3.20
3134 3792 4.896482 GCTCTCTACCCTTAAGATTGGAGA 59.104 45.833 3.36 10.82 0.00 3.71
3135 3793 4.039852 GGCTCTCTACCCTTAAGATTGGAG 59.960 50.000 3.36 7.13 0.00 3.86
3136 3794 3.967987 GGCTCTCTACCCTTAAGATTGGA 59.032 47.826 3.36 0.00 0.00 3.53
3137 3795 3.711704 TGGCTCTCTACCCTTAAGATTGG 59.288 47.826 3.36 0.00 0.00 3.16
3138 3796 5.559148 ATGGCTCTCTACCCTTAAGATTG 57.441 43.478 3.36 0.00 0.00 2.67
3139 3797 7.880265 ATTATGGCTCTCTACCCTTAAGATT 57.120 36.000 3.36 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.