Multiple sequence alignment - TraesCS3B01G595500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G595500 chr3B 100.000 4515 0 0 1 4515 818440522 818445036 0.000000e+00 8338
1 TraesCS3B01G595500 chr3A 92.387 3586 171 39 1 3524 745896940 745900485 0.000000e+00 5016
2 TraesCS3B01G595500 chr3A 87.432 366 37 5 4154 4515 745901040 745901400 3.250000e-111 412
3 TraesCS3B01G595500 chr3A 91.538 130 10 1 3823 3952 745900726 745900854 1.290000e-40 178
4 TraesCS3B01G595500 chr3D 91.059 1756 116 17 1221 2959 611112322 611114053 0.000000e+00 2335
5 TraesCS3B01G595500 chr3D 93.714 875 46 6 2938 3810 611114101 611114968 0.000000e+00 1303
6 TraesCS3B01G595500 chr3D 86.197 1036 80 38 204 1202 611110742 611111751 0.000000e+00 1062
7 TraesCS3B01G595500 chr3D 86.575 365 41 4 4154 4515 611115345 611115704 3.270000e-106 396
8 TraesCS3B01G595500 chr3D 93.284 134 8 1 3819 3952 611115026 611115158 3.560000e-46 196
9 TraesCS3B01G595500 chr7A 83.462 1034 145 17 2514 3540 734687107 734686093 0.000000e+00 939
10 TraesCS3B01G595500 chr2D 83.592 1030 139 22 2514 3534 2047990 2048998 0.000000e+00 939
11 TraesCS3B01G595500 chr7D 82.376 1027 157 15 2514 3534 632859041 632860049 0.000000e+00 872
12 TraesCS3B01G595500 chrUn 79.726 804 141 11 2694 3492 79679515 79678729 3.050000e-156 562
13 TraesCS3B01G595500 chr6D 76.907 944 186 21 2566 3499 468096563 468095642 1.450000e-139 507
14 TraesCS3B01G595500 chr6D 76.142 788 176 9 2694 3478 1448798 1449576 1.960000e-108 403
15 TraesCS3B01G595500 chr5B 75.823 972 203 23 2529 3490 629897885 629898834 8.850000e-127 464
16 TraesCS3B01G595500 chr1A 75.316 1029 220 21 2482 3499 38714037 38715042 3.180000e-126 462
17 TraesCS3B01G595500 chr1A 75.661 945 201 23 2579 3513 38702795 38703720 1.150000e-120 444
18 TraesCS3B01G595500 chr6B 76.196 899 190 23 2600 3487 1604788 1603903 1.910000e-123 453
19 TraesCS3B01G595500 chr1B 75.352 994 216 17 2515 3498 58557295 58558269 6.890000e-123 451


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G595500 chr3B 818440522 818445036 4514 False 8338.000000 8338 100.000000 1 4515 1 chr3B.!!$F1 4514
1 TraesCS3B01G595500 chr3A 745896940 745901400 4460 False 1868.666667 5016 90.452333 1 4515 3 chr3A.!!$F1 4514
2 TraesCS3B01G595500 chr3D 611110742 611115704 4962 False 1058.400000 2335 90.165800 204 4515 5 chr3D.!!$F1 4311
3 TraesCS3B01G595500 chr7A 734686093 734687107 1014 True 939.000000 939 83.462000 2514 3540 1 chr7A.!!$R1 1026
4 TraesCS3B01G595500 chr2D 2047990 2048998 1008 False 939.000000 939 83.592000 2514 3534 1 chr2D.!!$F1 1020
5 TraesCS3B01G595500 chr7D 632859041 632860049 1008 False 872.000000 872 82.376000 2514 3534 1 chr7D.!!$F1 1020
6 TraesCS3B01G595500 chrUn 79678729 79679515 786 True 562.000000 562 79.726000 2694 3492 1 chrUn.!!$R1 798
7 TraesCS3B01G595500 chr6D 468095642 468096563 921 True 507.000000 507 76.907000 2566 3499 1 chr6D.!!$R1 933
8 TraesCS3B01G595500 chr6D 1448798 1449576 778 False 403.000000 403 76.142000 2694 3478 1 chr6D.!!$F1 784
9 TraesCS3B01G595500 chr5B 629897885 629898834 949 False 464.000000 464 75.823000 2529 3490 1 chr5B.!!$F1 961
10 TraesCS3B01G595500 chr1A 38714037 38715042 1005 False 462.000000 462 75.316000 2482 3499 1 chr1A.!!$F2 1017
11 TraesCS3B01G595500 chr1A 38702795 38703720 925 False 444.000000 444 75.661000 2579 3513 1 chr1A.!!$F1 934
12 TraesCS3B01G595500 chr6B 1603903 1604788 885 True 453.000000 453 76.196000 2600 3487 1 chr6B.!!$R1 887
13 TraesCS3B01G595500 chr1B 58557295 58558269 974 False 451.000000 451 75.352000 2515 3498 1 chr1B.!!$F1 983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.465460 TCTGTTCCAGCCCAACACAC 60.465 55.0 0.00 0.00 30.49 3.82 F
1549 2164 0.182537 CCTTGGTCCCAGTTGTGACA 59.817 55.0 0.00 0.00 33.09 3.58 F
1561 2176 0.311790 TTGTGACACGTACGAGGGAC 59.688 55.0 24.41 14.85 0.00 4.46 F
1845 2460 0.393820 TAGACTTCGTGGCCGGTTTT 59.606 50.0 1.90 0.00 33.95 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 2317 0.606604 GAGCAACCTCTGGTTCCGTA 59.393 55.000 0.0 0.0 43.05 4.02 R
2493 3143 0.821711 CGGGGAGCAAAGAAACCACA 60.822 55.000 0.0 0.0 0.00 4.17 R
3139 3881 3.084786 GGTGTGCTCTTTATCTTTGGCT 58.915 45.455 0.0 0.0 0.00 4.75 R
3616 4448 0.541863 CACACCTCCCCGCTTCTATT 59.458 55.000 0.0 0.0 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.514441 CCCATTTCTTCATGCTAGCTAGTG 59.486 45.833 21.62 13.11 0.00 2.74
53 54 3.251972 TCATGCTAGCTAGTGACGATCTG 59.748 47.826 21.62 8.19 0.00 2.90
69 70 0.465460 TCTGTTCCAGCCCAACACAC 60.465 55.000 0.00 0.00 30.49 3.82
105 106 3.055385 AGGCATTAGTTTGCTCTAACGGA 60.055 43.478 0.00 0.00 42.38 4.69
107 108 3.063588 GCATTAGTTTGCTCTAACGGACC 59.936 47.826 0.00 0.00 39.57 4.46
142 143 3.508744 ATTTGCCGATCATGGACAAAC 57.491 42.857 9.59 0.00 37.62 2.93
145 146 0.734889 GCCGATCATGGACAAACTGG 59.265 55.000 0.00 0.00 0.00 4.00
155 156 3.791320 TGGACAAACTGGAGGAGTATCT 58.209 45.455 0.00 0.00 33.09 1.98
234 243 5.306394 TCGAGTAGAGTTCTCTGTTTCTCA 58.694 41.667 12.00 4.55 0.00 3.27
235 244 5.179742 TCGAGTAGAGTTCTCTGTTTCTCAC 59.820 44.000 12.00 1.47 0.00 3.51
240 252 5.363939 AGAGTTCTCTGTTTCTCACAAAGG 58.636 41.667 1.23 0.00 33.87 3.11
255 267 6.599244 TCTCACAAAGGTCATATTGATGGTTC 59.401 38.462 0.00 0.00 33.49 3.62
472 497 3.255642 GTGCCCAATCAGCTACAGAAAAA 59.744 43.478 0.00 0.00 0.00 1.94
642 667 6.787043 CACGTTTAGCAAAAGCATGATTTTTC 59.213 34.615 18.57 14.25 30.01 2.29
643 668 6.701400 ACGTTTAGCAAAAGCATGATTTTTCT 59.299 30.769 21.64 21.64 31.88 2.52
774 801 8.359642 GCATAAAGTTTGATATGGGCATCTTAA 58.640 33.333 0.00 0.00 31.58 1.85
779 806 8.995027 AGTTTGATATGGGCATCTTAATGTAA 57.005 30.769 0.00 0.00 35.18 2.41
852 879 2.582052 TCATCCGTGTGAAAGCCTTTT 58.418 42.857 0.00 0.00 0.00 2.27
865 892 1.982073 GCCTTTTCAGGACCGCATCG 61.982 60.000 0.00 0.00 44.19 3.84
909 962 5.488919 ACTCCATGGAAGAATTCTCCAACTA 59.511 40.000 22.39 13.44 46.56 2.24
967 1024 2.105006 ACCCATAGCATCATCATCGC 57.895 50.000 0.00 0.00 0.00 4.58
993 1050 4.780815 ACACCATATATCACCACCACAAG 58.219 43.478 0.00 0.00 0.00 3.16
1030 1093 3.388703 CTGCTGCTGCTCCTCCTCC 62.389 68.421 17.00 0.00 40.48 4.30
1092 1155 2.011741 CTAGCACACCGGCACCGATA 62.012 60.000 11.42 0.00 42.83 2.92
1098 1161 3.261951 CCGGCACCGATAACGCTG 61.262 66.667 11.42 0.00 42.83 5.18
1272 1887 3.058501 CGCAAACCAGAACCGAAGTAATT 60.059 43.478 0.00 0.00 0.00 1.40
1324 1939 6.767902 GCCAGATAAGTTTATCAACTCATCCA 59.232 38.462 12.89 0.00 42.89 3.41
1344 1959 1.446966 GTCGCCTGTTGAGCTCTCC 60.447 63.158 16.19 5.76 0.00 3.71
1380 1995 1.133809 AGGGGAAGCTACTGGTGCAA 61.134 55.000 0.00 0.00 0.00 4.08
1509 2124 2.281345 CTGATGGGCATCGGGAGC 60.281 66.667 0.00 0.00 39.85 4.70
1516 2131 4.925861 GCATCGGGAGCTCTGCCC 62.926 72.222 14.64 6.26 42.41 5.36
1548 2163 0.537371 CCCTTGGTCCCAGTTGTGAC 60.537 60.000 0.00 0.00 0.00 3.67
1549 2164 0.182537 CCTTGGTCCCAGTTGTGACA 59.817 55.000 0.00 0.00 33.09 3.58
1561 2176 0.311790 TTGTGACACGTACGAGGGAC 59.688 55.000 24.41 14.85 0.00 4.46
1632 2247 2.735772 CCAGGTCGCCATACAGCCT 61.736 63.158 0.00 0.00 0.00 4.58
1641 2256 3.866582 ATACAGCCTGAGCCGCCC 61.867 66.667 0.00 0.00 41.25 6.13
1697 2312 4.202641 TGAGAGGGAGTACTACAGAACCAA 60.203 45.833 7.57 0.00 0.00 3.67
1698 2313 4.748701 AGAGGGAGTACTACAGAACCAAA 58.251 43.478 7.57 0.00 0.00 3.28
1699 2314 4.773149 AGAGGGAGTACTACAGAACCAAAG 59.227 45.833 7.57 0.00 0.00 2.77
1700 2315 4.748701 AGGGAGTACTACAGAACCAAAGA 58.251 43.478 7.57 0.00 0.00 2.52
1701 2316 5.342866 AGGGAGTACTACAGAACCAAAGAT 58.657 41.667 7.57 0.00 0.00 2.40
1702 2317 5.785940 AGGGAGTACTACAGAACCAAAGATT 59.214 40.000 7.57 0.00 0.00 2.40
1703 2318 6.958192 AGGGAGTACTACAGAACCAAAGATTA 59.042 38.462 7.57 0.00 0.00 1.75
1704 2319 7.040494 GGGAGTACTACAGAACCAAAGATTAC 58.960 42.308 7.57 0.00 0.00 1.89
1705 2320 6.750963 GGAGTACTACAGAACCAAAGATTACG 59.249 42.308 0.00 0.00 0.00 3.18
1706 2321 6.628185 AGTACTACAGAACCAAAGATTACGG 58.372 40.000 0.00 0.00 0.00 4.02
1707 2322 5.733620 ACTACAGAACCAAAGATTACGGA 57.266 39.130 0.00 0.00 0.00 4.69
1708 2323 6.105397 ACTACAGAACCAAAGATTACGGAA 57.895 37.500 0.00 0.00 0.00 4.30
1709 2324 5.930569 ACTACAGAACCAAAGATTACGGAAC 59.069 40.000 0.00 0.00 0.00 3.62
1710 2325 4.070009 ACAGAACCAAAGATTACGGAACC 58.930 43.478 0.00 0.00 0.00 3.62
1711 2326 4.069304 CAGAACCAAAGATTACGGAACCA 58.931 43.478 0.00 0.00 0.00 3.67
1845 2460 0.393820 TAGACTTCGTGGCCGGTTTT 59.606 50.000 1.90 0.00 33.95 2.43
1866 2481 2.298158 ATCCATGTCCGCGACCTCAC 62.298 60.000 8.23 0.00 0.00 3.51
1900 2515 3.564027 GATACGCGTGCACCAGCC 61.564 66.667 24.59 0.00 41.13 4.85
1943 2558 1.448985 CCCTTGTTGTACACCGATGG 58.551 55.000 0.00 0.00 0.00 3.51
1997 2612 5.880901 AGGCAATCCTTATATACCAACTGG 58.119 41.667 0.00 0.00 40.66 4.00
2013 2628 1.063567 ACTGGTGGTTGCCAAGGTAAA 60.064 47.619 0.00 0.00 38.18 2.01
2120 2756 5.105756 GCTTGCCTGGTTTGTAGACATTAAT 60.106 40.000 0.00 0.00 0.00 1.40
2199 2835 2.422803 GGATACAAATGCACCTGCCCTA 60.423 50.000 0.00 0.00 41.18 3.53
2201 2837 0.405585 ACAAATGCACCTGCCCTACT 59.594 50.000 0.00 0.00 41.18 2.57
2254 2890 6.220930 GTTGCACCGATATATTTCCTCTACA 58.779 40.000 0.00 0.00 0.00 2.74
2312 2948 6.674419 ACCCTCAACCTATCATCTAAAGAACT 59.326 38.462 0.00 0.00 0.00 3.01
2315 2951 9.535878 CCTCAACCTATCATCTAAAGAACTAAC 57.464 37.037 0.00 0.00 0.00 2.34
2316 2952 9.535878 CTCAACCTATCATCTAAAGAACTAACC 57.464 37.037 0.00 0.00 0.00 2.85
2317 2953 8.483758 TCAACCTATCATCTAAAGAACTAACCC 58.516 37.037 0.00 0.00 0.00 4.11
2318 2954 7.989947 ACCTATCATCTAAAGAACTAACCCA 57.010 36.000 0.00 0.00 0.00 4.51
2319 2955 8.388656 ACCTATCATCTAAAGAACTAACCCAA 57.611 34.615 0.00 0.00 0.00 4.12
2320 2956 9.004231 ACCTATCATCTAAAGAACTAACCCAAT 57.996 33.333 0.00 0.00 0.00 3.16
2321 2957 9.495572 CCTATCATCTAAAGAACTAACCCAATC 57.504 37.037 0.00 0.00 0.00 2.67
2324 2960 8.792830 TCATCTAAAGAACTAACCCAATCAAG 57.207 34.615 0.00 0.00 0.00 3.02
2325 2961 8.602424 TCATCTAAAGAACTAACCCAATCAAGA 58.398 33.333 0.00 0.00 0.00 3.02
2326 2962 9.401058 CATCTAAAGAACTAACCCAATCAAGAT 57.599 33.333 0.00 0.00 0.00 2.40
2327 2963 8.792830 TCTAAAGAACTAACCCAATCAAGATG 57.207 34.615 0.00 0.00 0.00 2.90
2328 2964 8.602424 TCTAAAGAACTAACCCAATCAAGATGA 58.398 33.333 0.00 0.00 0.00 2.92
2329 2965 7.693969 AAAGAACTAACCCAATCAAGATGAG 57.306 36.000 0.00 0.00 0.00 2.90
2381 3017 6.147656 TGACTGTCTTTATATATTGCGGCATG 59.852 38.462 2.28 0.00 0.00 4.06
2392 3028 1.451927 GCGGCATGGTCTGATCCAA 60.452 57.895 0.00 0.00 41.09 3.53
2393 3029 1.718757 GCGGCATGGTCTGATCCAAC 61.719 60.000 0.00 0.00 41.09 3.77
2402 3038 6.623767 GCATGGTCTGATCCAACTTTTTACTC 60.624 42.308 0.00 0.00 41.09 2.59
2418 3056 9.877178 ACTTTTTACTCACTGACCTTATATCTG 57.123 33.333 0.00 0.00 0.00 2.90
2419 3057 8.718102 TTTTTACTCACTGACCTTATATCTGC 57.282 34.615 0.00 0.00 0.00 4.26
2420 3058 7.661536 TTTACTCACTGACCTTATATCTGCT 57.338 36.000 0.00 0.00 0.00 4.24
2421 3059 5.782893 ACTCACTGACCTTATATCTGCTC 57.217 43.478 0.00 0.00 0.00 4.26
2477 3124 6.072175 TGCACAAGACCTATAAATGGTTTGAC 60.072 38.462 0.00 0.00 38.03 3.18
2644 3299 5.047377 CCCTGCACTAGAAAAGGCAAAAATA 60.047 40.000 0.00 0.00 32.99 1.40
2689 3344 5.906285 CGAGCTCAAGCAGATTATAAAAAGC 59.094 40.000 15.40 0.00 45.16 3.51
2741 3396 5.533528 GGTGAAGTTTACAAGGGCTTTCTTA 59.466 40.000 0.00 0.00 0.00 2.10
2758 3413 7.915923 GGCTTTCTTAATAATCAACTAGTTGCC 59.084 37.037 27.49 17.02 40.24 4.52
3504 4246 3.309138 CGCCTTCTCACATTGAAGAGATG 59.691 47.826 12.10 13.21 42.37 2.90
3545 4377 9.511272 AGATATAAATGTATGCATGCTTTCAGA 57.489 29.630 20.33 6.92 35.15 3.27
3548 4380 8.812147 ATAAATGTATGCATGCTTTCAGATTG 57.188 30.769 20.33 0.00 35.15 2.67
3549 4381 5.847111 ATGTATGCATGCTTTCAGATTGT 57.153 34.783 20.33 0.00 33.37 2.71
3550 4382 6.947644 ATGTATGCATGCTTTCAGATTGTA 57.052 33.333 20.33 0.00 33.37 2.41
3551 4383 6.367686 TGTATGCATGCTTTCAGATTGTAG 57.632 37.500 20.33 0.00 0.00 2.74
3552 4384 5.882000 TGTATGCATGCTTTCAGATTGTAGT 59.118 36.000 20.33 0.00 0.00 2.73
3553 4385 7.047271 TGTATGCATGCTTTCAGATTGTAGTA 58.953 34.615 20.33 0.00 0.00 1.82
3554 4386 5.801350 TGCATGCTTTCAGATTGTAGTAC 57.199 39.130 20.33 0.00 0.00 2.73
3555 4387 4.329801 TGCATGCTTTCAGATTGTAGTACG 59.670 41.667 20.33 0.00 0.00 3.67
3556 4388 4.566759 GCATGCTTTCAGATTGTAGTACGA 59.433 41.667 11.37 0.00 0.00 3.43
3557 4389 5.063438 GCATGCTTTCAGATTGTAGTACGAA 59.937 40.000 11.37 0.00 0.00 3.85
3558 4390 6.700020 CATGCTTTCAGATTGTAGTACGAAG 58.300 40.000 0.00 0.00 0.00 3.79
3559 4391 6.020971 TGCTTTCAGATTGTAGTACGAAGA 57.979 37.500 0.00 0.00 0.00 2.87
3560 4392 6.452242 TGCTTTCAGATTGTAGTACGAAGAA 58.548 36.000 0.00 0.00 0.00 2.52
3561 4393 6.365247 TGCTTTCAGATTGTAGTACGAAGAAC 59.635 38.462 0.00 0.00 0.00 3.01
3562 4394 6.365247 GCTTTCAGATTGTAGTACGAAGAACA 59.635 38.462 0.00 0.00 0.00 3.18
3563 4395 7.063544 GCTTTCAGATTGTAGTACGAAGAACAT 59.936 37.037 0.00 0.00 0.00 2.71
3564 4396 7.812309 TTCAGATTGTAGTACGAAGAACATG 57.188 36.000 0.00 0.00 0.00 3.21
3565 4397 6.920817 TCAGATTGTAGTACGAAGAACATGT 58.079 36.000 0.00 0.00 0.00 3.21
3566 4398 8.047413 TCAGATTGTAGTACGAAGAACATGTA 57.953 34.615 0.00 0.00 0.00 2.29
3567 4399 8.683615 TCAGATTGTAGTACGAAGAACATGTAT 58.316 33.333 0.00 0.00 0.00 2.29
3568 4400 8.746751 CAGATTGTAGTACGAAGAACATGTATG 58.253 37.037 0.00 0.00 0.00 2.39
3569 4401 6.880822 TTGTAGTACGAAGAACATGTATGC 57.119 37.500 0.00 0.00 0.00 3.14
3570 4402 6.203808 TGTAGTACGAAGAACATGTATGCT 57.796 37.500 0.00 0.00 0.00 3.79
3571 4403 6.627243 TGTAGTACGAAGAACATGTATGCTT 58.373 36.000 0.00 3.37 0.00 3.91
3572 4404 7.094631 TGTAGTACGAAGAACATGTATGCTTT 58.905 34.615 0.00 0.00 0.00 3.51
3573 4405 6.408858 AGTACGAAGAACATGTATGCTTTG 57.591 37.500 16.06 16.06 0.00 2.77
3574 4406 4.083581 ACGAAGAACATGTATGCTTTGC 57.916 40.909 16.96 4.83 0.00 3.68
3575 4407 3.753272 ACGAAGAACATGTATGCTTTGCT 59.247 39.130 16.96 7.37 0.00 3.91
3576 4408 4.142816 ACGAAGAACATGTATGCTTTGCTC 60.143 41.667 16.96 2.77 0.00 4.26
3577 4409 4.142838 CGAAGAACATGTATGCTTTGCTCA 60.143 41.667 0.00 0.00 0.00 4.26
3578 4410 5.617529 CGAAGAACATGTATGCTTTGCTCAA 60.618 40.000 0.00 0.00 0.00 3.02
3579 4411 5.051891 AGAACATGTATGCTTTGCTCAAC 57.948 39.130 0.00 0.00 0.00 3.18
3580 4412 4.520111 AGAACATGTATGCTTTGCTCAACA 59.480 37.500 0.00 0.00 0.00 3.33
3581 4413 4.852134 ACATGTATGCTTTGCTCAACAA 57.148 36.364 0.00 0.00 36.13 2.83
3582 4414 4.801891 ACATGTATGCTTTGCTCAACAAG 58.198 39.130 0.00 0.00 40.06 3.16
3583 4415 4.520111 ACATGTATGCTTTGCTCAACAAGA 59.480 37.500 0.00 0.00 40.06 3.02
3584 4416 5.184479 ACATGTATGCTTTGCTCAACAAGAT 59.816 36.000 0.00 0.00 40.06 2.40
3585 4417 6.375174 ACATGTATGCTTTGCTCAACAAGATA 59.625 34.615 0.00 0.00 40.06 1.98
3586 4418 6.426980 TGTATGCTTTGCTCAACAAGATAG 57.573 37.500 0.00 0.00 40.06 2.08
3587 4419 4.978083 ATGCTTTGCTCAACAAGATAGG 57.022 40.909 0.00 0.00 40.06 2.57
3588 4420 3.754965 TGCTTTGCTCAACAAGATAGGT 58.245 40.909 0.00 0.00 40.06 3.08
3589 4421 4.905429 TGCTTTGCTCAACAAGATAGGTA 58.095 39.130 0.00 0.00 40.06 3.08
3590 4422 5.500234 TGCTTTGCTCAACAAGATAGGTAT 58.500 37.500 0.00 0.00 40.06 2.73
3591 4423 5.355071 TGCTTTGCTCAACAAGATAGGTATG 59.645 40.000 0.00 0.00 40.06 2.39
3592 4424 5.586243 GCTTTGCTCAACAAGATAGGTATGA 59.414 40.000 0.00 0.00 40.06 2.15
3593 4425 6.238320 GCTTTGCTCAACAAGATAGGTATGAG 60.238 42.308 0.00 0.00 40.06 2.90
3594 4426 5.939764 TGCTCAACAAGATAGGTATGAGT 57.060 39.130 0.00 0.00 37.27 3.41
3595 4427 6.299805 TGCTCAACAAGATAGGTATGAGTT 57.700 37.500 0.00 0.00 37.27 3.01
3596 4428 6.711277 TGCTCAACAAGATAGGTATGAGTTT 58.289 36.000 0.00 0.00 37.27 2.66
3597 4429 6.818644 TGCTCAACAAGATAGGTATGAGTTTC 59.181 38.462 0.00 0.00 37.27 2.78
3598 4430 6.019479 GCTCAACAAGATAGGTATGAGTTTCG 60.019 42.308 0.00 0.00 37.27 3.46
3599 4431 6.931838 TCAACAAGATAGGTATGAGTTTCGT 58.068 36.000 0.00 0.00 0.00 3.85
3600 4432 7.033791 TCAACAAGATAGGTATGAGTTTCGTC 58.966 38.462 0.00 0.00 0.00 4.20
3601 4433 5.903810 ACAAGATAGGTATGAGTTTCGTCC 58.096 41.667 0.00 0.00 0.00 4.79
3602 4434 5.421056 ACAAGATAGGTATGAGTTTCGTCCA 59.579 40.000 0.00 0.00 0.00 4.02
3603 4435 6.070995 ACAAGATAGGTATGAGTTTCGTCCAA 60.071 38.462 0.00 0.00 0.00 3.53
3604 4436 5.903810 AGATAGGTATGAGTTTCGTCCAAC 58.096 41.667 0.00 0.00 0.00 3.77
3605 4437 5.657302 AGATAGGTATGAGTTTCGTCCAACT 59.343 40.000 0.00 0.00 39.84 3.16
3606 4438 3.926616 AGGTATGAGTTTCGTCCAACTG 58.073 45.455 2.77 0.00 37.11 3.16
3607 4439 3.323979 AGGTATGAGTTTCGTCCAACTGT 59.676 43.478 2.77 0.00 37.11 3.55
3608 4440 4.062991 GGTATGAGTTTCGTCCAACTGTT 58.937 43.478 2.77 0.00 37.11 3.16
3609 4441 4.514066 GGTATGAGTTTCGTCCAACTGTTT 59.486 41.667 0.00 0.00 37.11 2.83
3610 4442 5.008316 GGTATGAGTTTCGTCCAACTGTTTT 59.992 40.000 0.00 0.00 37.11 2.43
3611 4443 4.609691 TGAGTTTCGTCCAACTGTTTTC 57.390 40.909 0.00 0.00 37.11 2.29
3612 4444 4.004314 TGAGTTTCGTCCAACTGTTTTCA 58.996 39.130 0.00 0.00 37.11 2.69
3613 4445 4.638421 TGAGTTTCGTCCAACTGTTTTCAT 59.362 37.500 0.00 0.00 37.11 2.57
3614 4446 4.920376 AGTTTCGTCCAACTGTTTTCATG 58.080 39.130 0.00 0.00 35.57 3.07
3615 4447 4.398044 AGTTTCGTCCAACTGTTTTCATGT 59.602 37.500 0.00 0.00 35.57 3.21
3616 4448 5.587043 AGTTTCGTCCAACTGTTTTCATGTA 59.413 36.000 0.00 0.00 35.57 2.29
3617 4449 6.094325 AGTTTCGTCCAACTGTTTTCATGTAA 59.906 34.615 0.00 0.00 35.57 2.41
3618 4450 6.627395 TTCGTCCAACTGTTTTCATGTAAT 57.373 33.333 0.00 0.00 0.00 1.89
3619 4451 7.731882 TTCGTCCAACTGTTTTCATGTAATA 57.268 32.000 0.00 0.00 0.00 0.98
3620 4452 7.359262 TCGTCCAACTGTTTTCATGTAATAG 57.641 36.000 0.00 0.00 0.00 1.73
3621 4453 7.156000 TCGTCCAACTGTTTTCATGTAATAGA 58.844 34.615 11.71 0.00 0.00 1.98
3622 4454 7.658167 TCGTCCAACTGTTTTCATGTAATAGAA 59.342 33.333 11.71 0.00 0.00 2.10
3623 4455 7.957484 CGTCCAACTGTTTTCATGTAATAGAAG 59.043 37.037 11.71 5.81 0.00 2.85
3624 4456 7.750903 GTCCAACTGTTTTCATGTAATAGAAGC 59.249 37.037 11.71 0.00 0.00 3.86
3662 4496 8.950210 CCTTTGCTCTAAGAAAACTATGAATGA 58.050 33.333 0.00 0.00 0.00 2.57
3690 4524 5.220228 CGTAAGATCTGGAAGTAAAAGCGTG 60.220 44.000 0.00 0.00 43.02 5.34
3766 4602 6.391227 AGCCTTTTGAAATATAATGGTCGG 57.609 37.500 0.00 0.00 0.00 4.79
3769 4605 6.405397 GCCTTTTGAAATATAATGGTCGGTGT 60.405 38.462 0.00 0.00 0.00 4.16
3772 4608 6.443934 TTGAAATATAATGGTCGGTGTTGG 57.556 37.500 0.00 0.00 0.00 3.77
3794 4630 8.462016 GTTGGTTGTTGATTAGCTTGAATATCT 58.538 33.333 0.00 0.00 0.00 1.98
3797 4633 8.844244 GGTTGTTGATTAGCTTGAATATCTGAT 58.156 33.333 0.00 0.00 0.00 2.90
3810 4646 8.607441 TTGAATATCTGATAGCCACAACATAC 57.393 34.615 3.48 0.00 0.00 2.39
3813 4649 5.876651 ATCTGATAGCCACAACATACTGA 57.123 39.130 0.00 0.00 0.00 3.41
3815 4651 6.976934 TCTGATAGCCACAACATACTGATA 57.023 37.500 0.00 0.00 0.00 2.15
3816 4652 7.544804 TCTGATAGCCACAACATACTGATAT 57.455 36.000 0.00 0.00 0.00 1.63
3817 4653 8.650143 TCTGATAGCCACAACATACTGATATA 57.350 34.615 0.00 0.00 0.00 0.86
3855 4740 7.347222 TGGAGTACCAAATATTACTCAGTGGAT 59.653 37.037 14.91 2.08 44.14 3.41
3860 4745 8.055279 ACCAAATATTACTCAGTGGATTTGTG 57.945 34.615 14.79 10.80 34.13 3.33
3868 4753 4.780021 ACTCAGTGGATTTGTGGACTATCT 59.220 41.667 0.00 0.00 0.00 1.98
3897 4782 8.484799 GTTGCTTCATAATATGCATGTTCAATG 58.515 33.333 12.36 11.52 35.27 2.82
3952 4837 5.165676 TGAAATGCTTCATGTGCAAAGATC 58.834 37.500 16.98 13.24 44.01 2.75
3953 4838 5.047590 TGAAATGCTTCATGTGCAAAGATCT 60.048 36.000 16.98 0.00 44.01 2.75
3954 4839 5.401531 AATGCTTCATGTGCAAAGATCTT 57.598 34.783 16.98 0.88 44.01 2.40
3955 4840 4.430137 TGCTTCATGTGCAAAGATCTTC 57.570 40.909 8.78 0.00 37.51 2.87
3956 4841 3.822167 TGCTTCATGTGCAAAGATCTTCA 59.178 39.130 8.78 2.56 37.51 3.02
3957 4842 4.164294 GCTTCATGTGCAAAGATCTTCAC 58.836 43.478 16.60 16.60 0.00 3.18
3958 4843 4.730657 CTTCATGTGCAAAGATCTTCACC 58.269 43.478 19.29 8.35 0.00 4.02
3959 4844 4.025040 TCATGTGCAAAGATCTTCACCT 57.975 40.909 19.29 10.59 0.00 4.00
3960 4845 4.401022 TCATGTGCAAAGATCTTCACCTT 58.599 39.130 19.29 8.58 0.00 3.50
3961 4846 4.456911 TCATGTGCAAAGATCTTCACCTTC 59.543 41.667 19.29 6.61 0.00 3.46
3962 4847 3.819368 TGTGCAAAGATCTTCACCTTCA 58.181 40.909 19.29 8.58 0.00 3.02
3963 4848 4.206375 TGTGCAAAGATCTTCACCTTCAA 58.794 39.130 19.29 3.53 0.00 2.69
3964 4849 4.828939 TGTGCAAAGATCTTCACCTTCAAT 59.171 37.500 19.29 0.00 0.00 2.57
3965 4850 5.159209 GTGCAAAGATCTTCACCTTCAATG 58.841 41.667 8.78 1.01 0.00 2.82
3966 4851 4.171754 GCAAAGATCTTCACCTTCAATGC 58.828 43.478 8.78 7.78 0.00 3.56
3967 4852 4.321452 GCAAAGATCTTCACCTTCAATGCA 60.321 41.667 8.78 0.00 0.00 3.96
3968 4853 5.399858 CAAAGATCTTCACCTTCAATGCAG 58.600 41.667 8.78 0.00 0.00 4.41
3969 4854 3.015327 AGATCTTCACCTTCAATGCAGC 58.985 45.455 0.00 0.00 0.00 5.25
3970 4855 1.538047 TCTTCACCTTCAATGCAGCC 58.462 50.000 0.00 0.00 0.00 4.85
3971 4856 1.074405 TCTTCACCTTCAATGCAGCCT 59.926 47.619 0.00 0.00 0.00 4.58
3972 4857 1.891150 CTTCACCTTCAATGCAGCCTT 59.109 47.619 0.00 0.00 0.00 4.35
3973 4858 1.538047 TCACCTTCAATGCAGCCTTC 58.462 50.000 0.00 0.00 0.00 3.46
3974 4859 0.169672 CACCTTCAATGCAGCCTTCG 59.830 55.000 0.00 0.00 0.00 3.79
3975 4860 0.962356 ACCTTCAATGCAGCCTTCGG 60.962 55.000 0.00 0.00 0.00 4.30
3976 4861 0.962356 CCTTCAATGCAGCCTTCGGT 60.962 55.000 0.00 0.00 0.00 4.69
3977 4862 0.883833 CTTCAATGCAGCCTTCGGTT 59.116 50.000 0.00 0.00 0.00 4.44
3978 4863 1.270550 CTTCAATGCAGCCTTCGGTTT 59.729 47.619 0.00 0.00 0.00 3.27
3979 4864 0.881118 TCAATGCAGCCTTCGGTTTC 59.119 50.000 0.00 0.00 0.00 2.78
3980 4865 0.883833 CAATGCAGCCTTCGGTTTCT 59.116 50.000 0.00 0.00 0.00 2.52
3981 4866 1.270550 CAATGCAGCCTTCGGTTTCTT 59.729 47.619 0.00 0.00 0.00 2.52
3982 4867 2.487762 CAATGCAGCCTTCGGTTTCTTA 59.512 45.455 0.00 0.00 0.00 2.10
3983 4868 2.264005 TGCAGCCTTCGGTTTCTTAA 57.736 45.000 0.00 0.00 0.00 1.85
3984 4869 2.790433 TGCAGCCTTCGGTTTCTTAAT 58.210 42.857 0.00 0.00 0.00 1.40
3985 4870 2.487762 TGCAGCCTTCGGTTTCTTAATG 59.512 45.455 0.00 0.00 0.00 1.90
3986 4871 2.732282 GCAGCCTTCGGTTTCTTAATGC 60.732 50.000 0.00 0.00 0.00 3.56
3987 4872 2.749621 CAGCCTTCGGTTTCTTAATGCT 59.250 45.455 0.00 0.00 0.00 3.79
3988 4873 2.749621 AGCCTTCGGTTTCTTAATGCTG 59.250 45.455 0.00 0.00 0.00 4.41
3989 4874 2.747446 GCCTTCGGTTTCTTAATGCTGA 59.253 45.455 0.00 0.00 0.00 4.26
3990 4875 3.378427 GCCTTCGGTTTCTTAATGCTGAT 59.622 43.478 0.00 0.00 0.00 2.90
3994 4879 3.616821 TCGGTTTCTTAATGCTGATGACG 59.383 43.478 0.00 0.00 0.00 4.35
4005 4890 1.199789 GCTGATGACGCCACATTTTCA 59.800 47.619 0.00 0.00 0.00 2.69
4021 4906 2.674380 CAGGAAGCAGCACCACCC 60.674 66.667 10.59 0.00 0.00 4.61
4022 4907 3.971702 AGGAAGCAGCACCACCCC 61.972 66.667 10.59 0.00 0.00 4.95
4023 4908 4.284550 GGAAGCAGCACCACCCCA 62.285 66.667 0.00 0.00 0.00 4.96
4024 4909 2.985847 GAAGCAGCACCACCCCAC 60.986 66.667 0.00 0.00 0.00 4.61
4025 4910 4.603535 AAGCAGCACCACCCCACC 62.604 66.667 0.00 0.00 0.00 4.61
4029 4914 1.533753 CAGCACCACCCCACCATTT 60.534 57.895 0.00 0.00 0.00 2.32
4031 4916 0.831711 AGCACCACCCCACCATTTTC 60.832 55.000 0.00 0.00 0.00 2.29
4032 4917 0.831711 GCACCACCCCACCATTTTCT 60.832 55.000 0.00 0.00 0.00 2.52
4033 4918 1.715785 CACCACCCCACCATTTTCTT 58.284 50.000 0.00 0.00 0.00 2.52
4034 4919 1.618343 CACCACCCCACCATTTTCTTC 59.382 52.381 0.00 0.00 0.00 2.87
4068 4953 5.473162 TCATACAAAAACCACTCCACTCATG 59.527 40.000 0.00 0.00 0.00 3.07
4072 4957 4.706842 AAAACCACTCCACTCATGTACT 57.293 40.909 0.00 0.00 0.00 2.73
4087 4972 8.700644 CACTCATGTACTTACAACAAACTAGTC 58.299 37.037 0.00 0.00 39.99 2.59
4101 4986 9.238368 CAACAAACTAGTCCCCAGAAAAATATA 57.762 33.333 0.00 0.00 0.00 0.86
4172 5085 0.465460 TTTTGAGCACTCGCAACCCT 60.465 50.000 0.00 0.00 42.27 4.34
4187 5100 2.674380 CCTGCTTGTGGACCCAGC 60.674 66.667 1.27 1.27 0.00 4.85
4213 5126 3.858247 AGCGTGTGAATAGTAGGGAAAC 58.142 45.455 0.00 0.00 0.00 2.78
4240 5153 0.185901 ACCAACCACCACTCATTGCT 59.814 50.000 0.00 0.00 0.00 3.91
4241 5154 0.599558 CCAACCACCACTCATTGCTG 59.400 55.000 0.00 0.00 0.00 4.41
4253 5166 1.524961 ATTGCTGCCCAATGCCATG 59.475 52.632 0.00 0.00 42.44 3.66
4280 5193 0.768221 TCTTGGGCCTCAGTGGAGTT 60.768 55.000 4.53 0.00 39.64 3.01
4310 5223 4.747810 CTGAAGCTTTTGTTTTGGTGTCT 58.252 39.130 0.00 0.00 0.00 3.41
4311 5224 4.743493 TGAAGCTTTTGTTTTGGTGTCTC 58.257 39.130 0.00 0.00 0.00 3.36
4315 5228 2.842208 TTTGTTTTGGTGTCTCGCTG 57.158 45.000 0.00 0.00 0.00 5.18
4316 5229 0.380378 TTGTTTTGGTGTCTCGCTGC 59.620 50.000 0.00 0.00 0.00 5.25
4326 5239 2.270205 CTCGCTGCTGGGTGGAAT 59.730 61.111 7.52 0.00 0.00 3.01
4335 5248 1.547675 GCTGGGTGGAATCTGGTGAAA 60.548 52.381 0.00 0.00 0.00 2.69
4336 5249 2.885554 GCTGGGTGGAATCTGGTGAAAT 60.886 50.000 0.00 0.00 0.00 2.17
4342 5255 5.454613 GGGTGGAATCTGGTGAAATTTTTGT 60.455 40.000 0.00 0.00 0.00 2.83
4344 5257 6.542005 GGTGGAATCTGGTGAAATTTTTGTTT 59.458 34.615 0.00 0.00 0.00 2.83
4345 5258 7.066887 GGTGGAATCTGGTGAAATTTTTGTTTT 59.933 33.333 0.00 0.00 0.00 2.43
4346 5259 7.909641 GTGGAATCTGGTGAAATTTTTGTTTTG 59.090 33.333 0.00 0.00 0.00 2.44
4350 5263 6.234177 TCTGGTGAAATTTTTGTTTTGGTGT 58.766 32.000 0.00 0.00 0.00 4.16
4351 5264 6.370166 TCTGGTGAAATTTTTGTTTTGGTGTC 59.630 34.615 0.00 0.00 0.00 3.67
4352 5265 5.120830 TGGTGAAATTTTTGTTTTGGTGTCG 59.879 36.000 0.00 0.00 0.00 4.35
4353 5266 5.120986 GGTGAAATTTTTGTTTTGGTGTCGT 59.879 36.000 0.00 0.00 0.00 4.34
4354 5267 6.012482 GTGAAATTTTTGTTTTGGTGTCGTG 58.988 36.000 0.00 0.00 0.00 4.35
4355 5268 5.120830 TGAAATTTTTGTTTTGGTGTCGTGG 59.879 36.000 0.00 0.00 0.00 4.94
4368 5281 5.184711 TGGTGTCGTGGTTTAACTAAAACT 58.815 37.500 0.00 0.00 45.70 2.66
4376 5289 6.940831 TGGTTTAACTAAAACTACCACCAC 57.059 37.500 0.00 0.00 45.70 4.16
4388 5301 7.865706 AAACTACCACCACAATTCTATGATC 57.134 36.000 0.00 0.00 0.00 2.92
4396 5309 4.825634 CCACAATTCTATGATCCATGCAGT 59.174 41.667 0.00 0.00 0.00 4.40
4419 5332 3.244215 ACGGCATCAGTTTCTTCTTCAGA 60.244 43.478 0.00 0.00 0.00 3.27
4420 5333 3.370366 CGGCATCAGTTTCTTCTTCAGAG 59.630 47.826 0.00 0.00 31.12 3.35
4433 5346 0.107703 TTCAGAGGCCAGCGGTTATG 60.108 55.000 5.01 0.00 0.00 1.90
4447 5362 5.580691 CAGCGGTTATGAGTGAACTTTATCA 59.419 40.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.046529 CGTCACTAGCTAGCATGAAGAAAT 58.953 41.667 20.91 0.00 0.00 2.17
26 27 4.157840 TCGTCACTAGCTAGCATGAAGAAA 59.842 41.667 20.91 3.21 28.61 2.52
37 38 3.617284 TGGAACAGATCGTCACTAGCTA 58.383 45.455 0.00 0.00 0.00 3.32
53 54 1.111277 AAAGTGTGTTGGGCTGGAAC 58.889 50.000 0.00 0.00 0.00 3.62
69 70 3.855689 AATGCCTCGGAATCACAAAAG 57.144 42.857 0.00 0.00 0.00 2.27
105 106 2.627699 CAAATACACAGCCAAACCTGGT 59.372 45.455 0.00 0.00 45.53 4.00
107 108 2.676076 GCAAATACACAGCCAAACCTG 58.324 47.619 0.00 0.00 38.78 4.00
116 117 3.002656 GTCCATGATCGGCAAATACACAG 59.997 47.826 0.00 0.00 0.00 3.66
122 123 3.091545 AGTTTGTCCATGATCGGCAAAT 58.908 40.909 3.98 0.00 35.76 2.32
142 143 8.739039 CATGAAACTAGATAGATACTCCTCCAG 58.261 40.741 0.00 0.00 0.00 3.86
173 174 7.012894 CCGTCCATATGCCTAACTTCAAAAATA 59.987 37.037 0.00 0.00 0.00 1.40
174 175 6.183360 CCGTCCATATGCCTAACTTCAAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
175 176 5.124776 CCGTCCATATGCCTAACTTCAAAAA 59.875 40.000 0.00 0.00 0.00 1.94
176 177 4.638421 CCGTCCATATGCCTAACTTCAAAA 59.362 41.667 0.00 0.00 0.00 2.44
177 178 4.080807 TCCGTCCATATGCCTAACTTCAAA 60.081 41.667 0.00 0.00 0.00 2.69
178 179 3.452990 TCCGTCCATATGCCTAACTTCAA 59.547 43.478 0.00 0.00 0.00 2.69
218 223 5.119694 ACCTTTGTGAGAAACAGAGAACTC 58.880 41.667 0.00 0.00 42.35 3.01
281 293 7.954056 ACCTCTACTGGCCACTGTATTATATTA 59.046 37.037 0.00 0.00 31.75 0.98
282 294 6.787957 ACCTCTACTGGCCACTGTATTATATT 59.212 38.462 0.00 0.00 31.75 1.28
283 295 6.323737 ACCTCTACTGGCCACTGTATTATAT 58.676 40.000 0.00 0.00 31.75 0.86
284 296 5.712752 ACCTCTACTGGCCACTGTATTATA 58.287 41.667 0.00 0.00 31.75 0.98
285 297 4.557705 ACCTCTACTGGCCACTGTATTAT 58.442 43.478 0.00 0.00 31.75 1.28
304 316 2.976882 TGAGCACTGGTTAAAGGTACCT 59.023 45.455 9.21 9.21 36.60 3.08
454 479 6.376581 AGAATCCTTTTTCTGTAGCTGATTGG 59.623 38.462 0.00 0.00 34.68 3.16
574 599 2.172293 GCCATCTCATTTCAGGAGACCT 59.828 50.000 0.00 0.00 43.65 3.85
774 801 9.342308 CCCACTTACACAGATTCATTATTACAT 57.658 33.333 0.00 0.00 0.00 2.29
776 803 8.958119 TCCCACTTACACAGATTCATTATTAC 57.042 34.615 0.00 0.00 0.00 1.89
779 806 6.058183 GCTCCCACTTACACAGATTCATTAT 58.942 40.000 0.00 0.00 0.00 1.28
808 835 3.366883 GGTCAGTCAGTCTCAGTCATCAC 60.367 52.174 0.00 0.00 0.00 3.06
819 846 1.478510 ACGGATGATGGTCAGTCAGTC 59.521 52.381 0.00 0.00 0.00 3.51
820 847 1.205655 CACGGATGATGGTCAGTCAGT 59.794 52.381 0.00 0.00 0.00 3.41
821 848 1.205655 ACACGGATGATGGTCAGTCAG 59.794 52.381 0.00 0.00 0.00 3.51
822 849 1.066929 CACACGGATGATGGTCAGTCA 60.067 52.381 0.00 0.00 0.00 3.41
823 850 1.204704 TCACACGGATGATGGTCAGTC 59.795 52.381 0.00 0.00 0.00 3.51
824 851 1.266178 TCACACGGATGATGGTCAGT 58.734 50.000 0.00 0.00 0.00 3.41
852 879 0.952280 GTCTATCGATGCGGTCCTGA 59.048 55.000 8.54 0.00 0.00 3.86
945 998 3.365666 GCGATGATGATGCTATGGGTTTG 60.366 47.826 0.00 0.00 0.00 2.93
950 1007 2.007608 CTGGCGATGATGATGCTATGG 58.992 52.381 0.00 0.00 0.00 2.74
967 1024 3.390967 TGGTGGTGATATATGGTGTCTGG 59.609 47.826 0.00 0.00 0.00 3.86
993 1050 1.549170 AGGTAGGTCGTCATGGTGAAC 59.451 52.381 0.00 0.00 0.00 3.18
1030 1093 0.892755 ACCATGATTGTTGCAGCCAG 59.107 50.000 0.00 0.00 0.00 4.85
1123 1186 1.285078 GGGGTAAGGGATGCTCACTTT 59.715 52.381 6.07 0.00 36.57 2.66
1272 1887 2.018355 TGTGGCTGGTGGAGTAGTAA 57.982 50.000 0.00 0.00 0.00 2.24
1324 1939 2.049063 GAGCTCAACAGGCGACGT 60.049 61.111 9.40 0.00 34.52 4.34
1380 1995 2.678934 TCGTAGCTGAACGGGGCT 60.679 61.111 9.06 0.00 43.05 5.19
1524 2139 2.935481 CTGGGACCAAGGGCCTGA 60.935 66.667 6.92 0.00 0.00 3.86
1528 2143 1.903404 CACAACTGGGACCAAGGGC 60.903 63.158 0.00 0.00 0.00 5.19
1548 2163 1.012841 GGTAGAGTCCCTCGTACGTG 58.987 60.000 16.05 13.00 35.36 4.49
1549 2164 0.908198 AGGTAGAGTCCCTCGTACGT 59.092 55.000 16.05 0.00 35.36 3.57
1641 2256 1.204792 CGTTGAAAAAGCCCGGTTTG 58.795 50.000 0.00 0.00 0.00 2.93
1697 2312 3.868754 GCAACCTCTGGTTCCGTAATCTT 60.869 47.826 0.00 0.00 43.05 2.40
1698 2313 2.354805 GCAACCTCTGGTTCCGTAATCT 60.355 50.000 0.00 0.00 43.05 2.40
1699 2314 2.007608 GCAACCTCTGGTTCCGTAATC 58.992 52.381 0.00 0.00 43.05 1.75
1700 2315 1.628846 AGCAACCTCTGGTTCCGTAAT 59.371 47.619 0.00 0.00 43.05 1.89
1701 2316 1.001633 GAGCAACCTCTGGTTCCGTAA 59.998 52.381 0.00 0.00 43.05 3.18
1702 2317 0.606604 GAGCAACCTCTGGTTCCGTA 59.393 55.000 0.00 0.00 43.05 4.02
1703 2318 1.371558 GAGCAACCTCTGGTTCCGT 59.628 57.895 0.00 0.00 43.05 4.69
1704 2319 1.376037 GGAGCAACCTCTGGTTCCG 60.376 63.158 0.00 0.00 43.05 4.30
1705 2320 4.724262 GGAGCAACCTCTGGTTCC 57.276 61.111 0.00 0.00 43.05 3.62
1845 2460 2.016393 GAGGTCGCGGACATGGATGA 62.016 60.000 6.13 0.00 33.68 2.92
1866 2481 1.867595 ATCCCTTGGGCTCTGGTTGG 61.868 60.000 0.00 0.00 0.00 3.77
1960 2575 1.546589 TTGCCTTCGTACCCGTCCAT 61.547 55.000 0.00 0.00 35.01 3.41
1997 2612 5.941647 TCTAGTATTTTACCTTGGCAACCAC 59.058 40.000 0.00 0.00 30.78 4.16
2013 2628 8.216423 AGATGAATTGATGCAAGGTCTAGTATT 58.784 33.333 0.00 0.00 0.00 1.89
2120 2756 2.230994 GATCTGGCCGCTCACACTCA 62.231 60.000 0.00 0.00 0.00 3.41
2173 2809 3.433598 GCAGGTGCATTTGTATCCTCCTA 60.434 47.826 0.00 0.00 41.59 2.94
2199 2835 1.077265 CATTGCCCCTGGTTCCAGT 59.923 57.895 16.33 0.00 32.56 4.00
2201 2837 2.283821 GCATTGCCCCTGGTTCCA 60.284 61.111 0.00 0.00 0.00 3.53
2254 2890 2.938956 ACCTAGTGACAGCTTTGCTT 57.061 45.000 0.00 0.00 36.40 3.91
2312 2948 4.081365 TGCGTACTCATCTTGATTGGGTTA 60.081 41.667 0.00 0.00 0.00 2.85
2315 2951 2.905075 TGCGTACTCATCTTGATTGGG 58.095 47.619 0.00 0.00 0.00 4.12
2316 2952 5.928264 TCATATGCGTACTCATCTTGATTGG 59.072 40.000 0.65 0.00 0.00 3.16
2317 2953 7.592439 ATCATATGCGTACTCATCTTGATTG 57.408 36.000 14.08 2.49 31.19 2.67
2318 2954 8.501580 CAAATCATATGCGTACTCATCTTGATT 58.498 33.333 20.46 20.46 39.03 2.57
2319 2955 7.118825 CCAAATCATATGCGTACTCATCTTGAT 59.881 37.037 14.08 14.08 34.05 2.57
2320 2956 6.424812 CCAAATCATATGCGTACTCATCTTGA 59.575 38.462 0.65 7.59 0.00 3.02
2321 2957 6.596703 CCAAATCATATGCGTACTCATCTTG 58.403 40.000 0.65 2.39 0.00 3.02
2322 2958 5.180117 GCCAAATCATATGCGTACTCATCTT 59.820 40.000 0.65 0.00 0.00 2.40
2323 2959 4.692625 GCCAAATCATATGCGTACTCATCT 59.307 41.667 0.65 0.00 0.00 2.90
2324 2960 4.452114 TGCCAAATCATATGCGTACTCATC 59.548 41.667 0.65 0.00 0.00 2.92
2325 2961 4.388485 TGCCAAATCATATGCGTACTCAT 58.612 39.130 3.47 3.47 0.00 2.90
2326 2962 3.802866 TGCCAAATCATATGCGTACTCA 58.197 40.909 0.00 0.00 0.00 3.41
2327 2963 4.811555 TTGCCAAATCATATGCGTACTC 57.188 40.909 0.00 0.00 0.00 2.59
2328 2964 5.772825 ATTTGCCAAATCATATGCGTACT 57.227 34.783 0.00 0.00 0.00 2.73
2329 2965 6.255453 ACAAATTTGCCAAATCATATGCGTAC 59.745 34.615 18.12 0.00 0.00 3.67
2381 3017 5.998363 AGTGAGTAAAAAGTTGGATCAGACC 59.002 40.000 0.00 0.00 0.00 3.85
2392 3028 9.877178 CAGATATAAGGTCAGTGAGTAAAAAGT 57.123 33.333 0.00 0.00 0.00 2.66
2393 3029 8.821894 GCAGATATAAGGTCAGTGAGTAAAAAG 58.178 37.037 0.00 0.00 0.00 2.27
2402 3038 4.576216 ACGAGCAGATATAAGGTCAGTG 57.424 45.455 0.00 0.00 32.77 3.66
2417 3055 4.502962 TGTGATTATGTGATCAACGAGCA 58.497 39.130 0.00 0.00 37.75 4.26
2418 3056 5.469373 TTGTGATTATGTGATCAACGAGC 57.531 39.130 0.00 0.00 37.75 5.03
2419 3057 6.092670 ACCTTTGTGATTATGTGATCAACGAG 59.907 38.462 0.00 0.00 37.75 4.18
2420 3058 5.937540 ACCTTTGTGATTATGTGATCAACGA 59.062 36.000 0.00 0.00 37.75 3.85
2421 3059 6.182039 ACCTTTGTGATTATGTGATCAACG 57.818 37.500 0.00 0.00 37.75 4.10
2493 3143 0.821711 CGGGGAGCAAAGAAACCACA 60.822 55.000 0.00 0.00 0.00 4.17
2644 3299 6.975772 GCTCGTCTCTTGTGTAGATCTTTATT 59.024 38.462 0.00 0.00 30.92 1.40
2689 3344 4.186856 ACCCTTGCCGATAAAATTTGTG 57.813 40.909 0.00 0.00 0.00 3.33
2741 3396 8.556213 TTCTTTACGGCAACTAGTTGATTATT 57.444 30.769 34.43 17.14 42.93 1.40
2758 3413 4.258543 TGTCCTTAATGGGCTTCTTTACG 58.741 43.478 0.00 0.00 42.07 3.18
3139 3881 3.084786 GGTGTGCTCTTTATCTTTGGCT 58.915 45.455 0.00 0.00 0.00 4.75
3142 3884 7.041098 ACTGTTAAGGTGTGCTCTTTATCTTTG 60.041 37.037 0.00 0.00 0.00 2.77
3527 4359 5.847111 ACAATCTGAAAGCATGCATACAT 57.153 34.783 21.98 0.00 36.79 2.29
3528 4360 5.882000 ACTACAATCTGAAAGCATGCATACA 59.118 36.000 21.98 14.57 0.00 2.29
3529 4361 6.369059 ACTACAATCTGAAAGCATGCATAC 57.631 37.500 21.98 10.57 0.00 2.39
3530 4362 6.200854 CGTACTACAATCTGAAAGCATGCATA 59.799 38.462 21.98 1.62 0.00 3.14
3531 4363 5.007039 CGTACTACAATCTGAAAGCATGCAT 59.993 40.000 21.98 4.57 0.00 3.96
3532 4364 4.329801 CGTACTACAATCTGAAAGCATGCA 59.670 41.667 21.98 0.00 0.00 3.96
3533 4365 4.566759 TCGTACTACAATCTGAAAGCATGC 59.433 41.667 10.51 10.51 0.00 4.06
3534 4366 6.531594 TCTTCGTACTACAATCTGAAAGCATG 59.468 38.462 0.00 0.00 0.00 4.06
3535 4367 6.631016 TCTTCGTACTACAATCTGAAAGCAT 58.369 36.000 0.00 0.00 0.00 3.79
3536 4368 6.020971 TCTTCGTACTACAATCTGAAAGCA 57.979 37.500 0.00 0.00 0.00 3.91
3537 4369 6.365247 TGTTCTTCGTACTACAATCTGAAAGC 59.635 38.462 0.00 0.00 0.00 3.51
3538 4370 7.869016 TGTTCTTCGTACTACAATCTGAAAG 57.131 36.000 0.00 0.00 0.00 2.62
3539 4371 7.870954 ACATGTTCTTCGTACTACAATCTGAAA 59.129 33.333 0.00 0.00 0.00 2.69
3540 4372 7.375834 ACATGTTCTTCGTACTACAATCTGAA 58.624 34.615 0.00 0.00 0.00 3.02
3541 4373 6.920817 ACATGTTCTTCGTACTACAATCTGA 58.079 36.000 0.00 0.00 0.00 3.27
3542 4374 8.746751 CATACATGTTCTTCGTACTACAATCTG 58.253 37.037 2.30 0.00 0.00 2.90
3543 4375 7.435488 GCATACATGTTCTTCGTACTACAATCT 59.565 37.037 2.30 0.00 0.00 2.40
3544 4376 7.435488 AGCATACATGTTCTTCGTACTACAATC 59.565 37.037 2.30 0.00 0.00 2.67
3545 4377 7.265673 AGCATACATGTTCTTCGTACTACAAT 58.734 34.615 2.30 0.00 0.00 2.71
3546 4378 6.627243 AGCATACATGTTCTTCGTACTACAA 58.373 36.000 2.30 0.00 0.00 2.41
3547 4379 6.203808 AGCATACATGTTCTTCGTACTACA 57.796 37.500 2.30 0.00 0.00 2.74
3548 4380 7.391786 CAAAGCATACATGTTCTTCGTACTAC 58.608 38.462 2.30 0.00 0.00 2.73
3549 4381 6.035650 GCAAAGCATACATGTTCTTCGTACTA 59.964 38.462 2.30 0.00 0.00 1.82
3550 4382 5.163854 GCAAAGCATACATGTTCTTCGTACT 60.164 40.000 2.30 0.00 0.00 2.73
3551 4383 5.022021 GCAAAGCATACATGTTCTTCGTAC 58.978 41.667 2.30 0.00 0.00 3.67
3552 4384 4.935205 AGCAAAGCATACATGTTCTTCGTA 59.065 37.500 2.30 0.00 0.00 3.43
3553 4385 3.753272 AGCAAAGCATACATGTTCTTCGT 59.247 39.130 2.30 0.00 0.00 3.85
3554 4386 4.142838 TGAGCAAAGCATACATGTTCTTCG 60.143 41.667 2.30 0.00 0.00 3.79
3555 4387 5.300969 TGAGCAAAGCATACATGTTCTTC 57.699 39.130 2.30 0.00 0.00 2.87
3556 4388 5.009911 TGTTGAGCAAAGCATACATGTTCTT 59.990 36.000 2.30 2.72 0.00 2.52
3557 4389 4.520111 TGTTGAGCAAAGCATACATGTTCT 59.480 37.500 2.30 0.00 0.00 3.01
3558 4390 4.797471 TGTTGAGCAAAGCATACATGTTC 58.203 39.130 2.30 0.00 0.00 3.18
3559 4391 4.852134 TGTTGAGCAAAGCATACATGTT 57.148 36.364 2.30 0.00 0.00 2.71
3560 4392 4.520111 TCTTGTTGAGCAAAGCATACATGT 59.480 37.500 2.69 2.69 36.53 3.21
3561 4393 5.050644 TCTTGTTGAGCAAAGCATACATG 57.949 39.130 0.00 0.00 36.53 3.21
3562 4394 5.909621 ATCTTGTTGAGCAAAGCATACAT 57.090 34.783 0.00 0.00 36.53 2.29
3563 4395 5.355071 CCTATCTTGTTGAGCAAAGCATACA 59.645 40.000 0.00 0.00 36.53 2.29
3564 4396 5.355350 ACCTATCTTGTTGAGCAAAGCATAC 59.645 40.000 0.00 0.00 36.53 2.39
3565 4397 5.500234 ACCTATCTTGTTGAGCAAAGCATA 58.500 37.500 0.00 0.00 36.53 3.14
3566 4398 4.338879 ACCTATCTTGTTGAGCAAAGCAT 58.661 39.130 0.00 0.00 36.53 3.79
3567 4399 3.754965 ACCTATCTTGTTGAGCAAAGCA 58.245 40.909 0.00 0.00 36.53 3.91
3568 4400 5.586243 TCATACCTATCTTGTTGAGCAAAGC 59.414 40.000 0.00 0.00 36.53 3.51
3569 4401 6.820656 ACTCATACCTATCTTGTTGAGCAAAG 59.179 38.462 0.00 0.00 36.53 2.77
3570 4402 6.711277 ACTCATACCTATCTTGTTGAGCAAA 58.289 36.000 0.00 0.00 36.53 3.68
3571 4403 6.299805 ACTCATACCTATCTTGTTGAGCAA 57.700 37.500 0.00 0.00 35.20 3.91
3572 4404 5.939764 ACTCATACCTATCTTGTTGAGCA 57.060 39.130 0.00 0.00 35.20 4.26
3573 4405 6.019479 CGAAACTCATACCTATCTTGTTGAGC 60.019 42.308 0.00 0.00 35.20 4.26
3574 4406 7.036220 ACGAAACTCATACCTATCTTGTTGAG 58.964 38.462 0.00 0.00 37.27 3.02
3575 4407 6.931838 ACGAAACTCATACCTATCTTGTTGA 58.068 36.000 0.00 0.00 0.00 3.18
3576 4408 6.255887 GGACGAAACTCATACCTATCTTGTTG 59.744 42.308 0.00 0.00 0.00 3.33
3577 4409 6.070995 TGGACGAAACTCATACCTATCTTGTT 60.071 38.462 0.00 0.00 0.00 2.83
3578 4410 5.421056 TGGACGAAACTCATACCTATCTTGT 59.579 40.000 0.00 0.00 0.00 3.16
3579 4411 5.902681 TGGACGAAACTCATACCTATCTTG 58.097 41.667 0.00 0.00 0.00 3.02
3580 4412 6.154706 AGTTGGACGAAACTCATACCTATCTT 59.845 38.462 0.00 0.00 35.44 2.40
3581 4413 5.657302 AGTTGGACGAAACTCATACCTATCT 59.343 40.000 0.00 0.00 35.44 1.98
3582 4414 5.749109 CAGTTGGACGAAACTCATACCTATC 59.251 44.000 0.00 0.00 38.34 2.08
3583 4415 5.187186 ACAGTTGGACGAAACTCATACCTAT 59.813 40.000 0.00 0.00 38.34 2.57
3584 4416 4.525487 ACAGTTGGACGAAACTCATACCTA 59.475 41.667 0.00 0.00 38.34 3.08
3585 4417 3.323979 ACAGTTGGACGAAACTCATACCT 59.676 43.478 0.00 0.00 38.34 3.08
3586 4418 3.660865 ACAGTTGGACGAAACTCATACC 58.339 45.455 0.00 0.00 38.34 2.73
3587 4419 5.668558 AAACAGTTGGACGAAACTCATAC 57.331 39.130 0.00 0.00 38.34 2.39
3588 4420 5.818336 TGAAAACAGTTGGACGAAACTCATA 59.182 36.000 0.00 0.00 38.34 2.15
3589 4421 4.638421 TGAAAACAGTTGGACGAAACTCAT 59.362 37.500 0.00 0.00 38.34 2.90
3590 4422 4.004314 TGAAAACAGTTGGACGAAACTCA 58.996 39.130 0.00 0.00 38.34 3.41
3591 4423 4.609691 TGAAAACAGTTGGACGAAACTC 57.390 40.909 0.00 0.00 38.34 3.01
3592 4424 4.398044 ACATGAAAACAGTTGGACGAAACT 59.602 37.500 0.00 0.00 41.08 2.66
3593 4425 4.668289 ACATGAAAACAGTTGGACGAAAC 58.332 39.130 0.00 0.00 0.00 2.78
3594 4426 4.974368 ACATGAAAACAGTTGGACGAAA 57.026 36.364 0.00 0.00 0.00 3.46
3595 4427 6.627395 ATTACATGAAAACAGTTGGACGAA 57.373 33.333 0.00 0.00 0.00 3.85
3596 4428 7.156000 TCTATTACATGAAAACAGTTGGACGA 58.844 34.615 0.00 0.00 0.00 4.20
3597 4429 7.359262 TCTATTACATGAAAACAGTTGGACG 57.641 36.000 0.00 0.00 0.00 4.79
3598 4430 7.750903 GCTTCTATTACATGAAAACAGTTGGAC 59.249 37.037 0.00 0.00 0.00 4.02
3599 4431 7.360861 CGCTTCTATTACATGAAAACAGTTGGA 60.361 37.037 0.00 0.00 0.00 3.53
3600 4432 6.742718 CGCTTCTATTACATGAAAACAGTTGG 59.257 38.462 0.00 0.00 0.00 3.77
3601 4433 6.742718 CCGCTTCTATTACATGAAAACAGTTG 59.257 38.462 0.00 0.00 0.00 3.16
3602 4434 6.128007 CCCGCTTCTATTACATGAAAACAGTT 60.128 38.462 0.00 0.00 0.00 3.16
3603 4435 5.354234 CCCGCTTCTATTACATGAAAACAGT 59.646 40.000 0.00 0.00 0.00 3.55
3604 4436 5.220854 CCCCGCTTCTATTACATGAAAACAG 60.221 44.000 0.00 0.00 0.00 3.16
3605 4437 4.638421 CCCCGCTTCTATTACATGAAAACA 59.362 41.667 0.00 0.00 0.00 2.83
3606 4438 4.879545 TCCCCGCTTCTATTACATGAAAAC 59.120 41.667 0.00 0.00 0.00 2.43
3607 4439 5.105567 TCCCCGCTTCTATTACATGAAAA 57.894 39.130 0.00 0.00 0.00 2.29
3608 4440 4.444306 CCTCCCCGCTTCTATTACATGAAA 60.444 45.833 0.00 0.00 0.00 2.69
3609 4441 3.071023 CCTCCCCGCTTCTATTACATGAA 59.929 47.826 0.00 0.00 0.00 2.57
3610 4442 2.632996 CCTCCCCGCTTCTATTACATGA 59.367 50.000 0.00 0.00 0.00 3.07
3611 4443 2.368875 ACCTCCCCGCTTCTATTACATG 59.631 50.000 0.00 0.00 0.00 3.21
3612 4444 2.368875 CACCTCCCCGCTTCTATTACAT 59.631 50.000 0.00 0.00 0.00 2.29
3613 4445 1.760613 CACCTCCCCGCTTCTATTACA 59.239 52.381 0.00 0.00 0.00 2.41
3614 4446 1.761198 ACACCTCCCCGCTTCTATTAC 59.239 52.381 0.00 0.00 0.00 1.89
3615 4447 1.760613 CACACCTCCCCGCTTCTATTA 59.239 52.381 0.00 0.00 0.00 0.98
3616 4448 0.541863 CACACCTCCCCGCTTCTATT 59.458 55.000 0.00 0.00 0.00 1.73
3617 4449 1.972660 GCACACCTCCCCGCTTCTAT 61.973 60.000 0.00 0.00 0.00 1.98
3618 4450 2.656069 GCACACCTCCCCGCTTCTA 61.656 63.158 0.00 0.00 0.00 2.10
3619 4451 4.021925 GCACACCTCCCCGCTTCT 62.022 66.667 0.00 0.00 0.00 2.85
3662 4496 7.201530 CGCTTTTACTTCCAGATCTTACGAATT 60.202 37.037 0.00 0.00 0.00 2.17
3666 4500 4.863131 ACGCTTTTACTTCCAGATCTTACG 59.137 41.667 0.00 0.00 0.00 3.18
3678 4512 4.839668 TGCCATAAACACGCTTTTACTT 57.160 36.364 0.00 0.00 0.00 2.24
3690 4524 5.360714 TCCATTGAGATTCCTTGCCATAAAC 59.639 40.000 0.00 0.00 0.00 2.01
3751 4585 6.127842 ACAACCAACACCGACCATTATATTTC 60.128 38.462 0.00 0.00 0.00 2.17
3756 4590 3.149005 ACAACCAACACCGACCATTAT 57.851 42.857 0.00 0.00 0.00 1.28
3765 4601 4.037446 TCAAGCTAATCAACAACCAACACC 59.963 41.667 0.00 0.00 0.00 4.16
3766 4602 5.181690 TCAAGCTAATCAACAACCAACAC 57.818 39.130 0.00 0.00 0.00 3.32
3769 4605 8.461222 CAGATATTCAAGCTAATCAACAACCAA 58.539 33.333 0.00 0.00 0.00 3.67
3794 4630 7.093333 CCCTATATCAGTATGTTGTGGCTATCA 60.093 40.741 0.00 0.00 37.40 2.15
3797 4633 5.046591 GCCCTATATCAGTATGTTGTGGCTA 60.047 44.000 0.00 0.00 37.40 3.93
3810 4646 6.243900 ACTCCAATTTCATGCCCTATATCAG 58.756 40.000 0.00 0.00 0.00 2.90
3813 4649 6.045459 TGGTACTCCAATTTCATGCCCTATAT 59.955 38.462 0.00 0.00 41.25 0.86
3815 4651 4.167892 TGGTACTCCAATTTCATGCCCTAT 59.832 41.667 0.00 0.00 41.25 2.57
3816 4652 3.525609 TGGTACTCCAATTTCATGCCCTA 59.474 43.478 0.00 0.00 41.25 3.53
3817 4653 2.311542 TGGTACTCCAATTTCATGCCCT 59.688 45.455 0.00 0.00 41.25 5.19
3849 4734 6.814954 ACATAGATAGTCCACAAATCCACT 57.185 37.500 0.00 0.00 0.00 4.00
3851 4736 5.822519 GCAACATAGATAGTCCACAAATCCA 59.177 40.000 0.00 0.00 0.00 3.41
3855 4740 6.472016 TGAAGCAACATAGATAGTCCACAAA 58.528 36.000 0.00 0.00 0.00 2.83
3868 4753 8.848182 TGAACATGCATATTATGAAGCAACATA 58.152 29.630 7.87 0.00 40.76 2.29
3897 4782 1.273327 CCCCCAGAGTTGTTCAAATGC 59.727 52.381 0.00 0.00 0.00 3.56
3904 4789 3.333680 ACATCATTACCCCCAGAGTTGTT 59.666 43.478 0.00 0.00 0.00 2.83
3906 4791 3.200825 AGACATCATTACCCCCAGAGTTG 59.799 47.826 0.00 0.00 0.00 3.16
3913 4798 4.202151 GCATTTCAAGACATCATTACCCCC 60.202 45.833 0.00 0.00 0.00 5.40
3952 4837 1.542492 AGGCTGCATTGAAGGTGAAG 58.458 50.000 0.50 0.00 0.00 3.02
3953 4838 1.888512 GAAGGCTGCATTGAAGGTGAA 59.111 47.619 3.50 0.00 0.00 3.18
3954 4839 1.538047 GAAGGCTGCATTGAAGGTGA 58.462 50.000 3.50 0.00 0.00 4.02
3955 4840 0.169672 CGAAGGCTGCATTGAAGGTG 59.830 55.000 3.50 0.00 0.00 4.00
3956 4841 0.962356 CCGAAGGCTGCATTGAAGGT 60.962 55.000 3.50 0.00 46.14 3.50
3957 4842 1.805254 CCGAAGGCTGCATTGAAGG 59.195 57.895 3.50 1.24 46.14 3.46
3970 4855 5.563842 GTCATCAGCATTAAGAAACCGAAG 58.436 41.667 0.00 0.00 0.00 3.79
3971 4856 4.092821 CGTCATCAGCATTAAGAAACCGAA 59.907 41.667 0.00 0.00 0.00 4.30
3972 4857 3.616821 CGTCATCAGCATTAAGAAACCGA 59.383 43.478 0.00 0.00 0.00 4.69
3973 4858 3.785505 GCGTCATCAGCATTAAGAAACCG 60.786 47.826 0.00 0.00 34.19 4.44
3974 4859 3.487544 GGCGTCATCAGCATTAAGAAACC 60.488 47.826 0.00 0.00 36.08 3.27
3975 4860 3.126858 TGGCGTCATCAGCATTAAGAAAC 59.873 43.478 0.00 0.00 36.08 2.78
3976 4861 3.126858 GTGGCGTCATCAGCATTAAGAAA 59.873 43.478 0.00 0.00 36.08 2.52
3977 4862 2.677836 GTGGCGTCATCAGCATTAAGAA 59.322 45.455 0.00 0.00 36.08 2.52
3978 4863 2.279741 GTGGCGTCATCAGCATTAAGA 58.720 47.619 0.00 0.00 36.08 2.10
3979 4864 2.009051 TGTGGCGTCATCAGCATTAAG 58.991 47.619 0.00 0.00 36.08 1.85
3980 4865 2.106477 TGTGGCGTCATCAGCATTAA 57.894 45.000 0.00 0.00 36.08 1.40
3981 4866 2.330440 ATGTGGCGTCATCAGCATTA 57.670 45.000 0.00 0.00 36.08 1.90
3982 4867 1.466856 AATGTGGCGTCATCAGCATT 58.533 45.000 0.00 0.00 36.08 3.56
3983 4868 1.466856 AAATGTGGCGTCATCAGCAT 58.533 45.000 0.00 0.00 36.08 3.79
3984 4869 1.199789 GAAAATGTGGCGTCATCAGCA 59.800 47.619 0.00 0.00 36.08 4.41
3985 4870 1.199789 TGAAAATGTGGCGTCATCAGC 59.800 47.619 0.00 0.00 0.00 4.26
3986 4871 2.159476 CCTGAAAATGTGGCGTCATCAG 60.159 50.000 10.00 10.00 0.00 2.90
3987 4872 1.811965 CCTGAAAATGTGGCGTCATCA 59.188 47.619 0.00 0.00 0.00 3.07
3988 4873 2.083774 TCCTGAAAATGTGGCGTCATC 58.916 47.619 0.00 0.00 0.00 2.92
3989 4874 2.198827 TCCTGAAAATGTGGCGTCAT 57.801 45.000 0.00 0.00 0.00 3.06
3990 4875 1.879380 CTTCCTGAAAATGTGGCGTCA 59.121 47.619 0.00 0.00 0.00 4.35
3994 4879 1.670967 GCTGCTTCCTGAAAATGTGGC 60.671 52.381 0.00 0.00 0.00 5.01
4005 4890 3.971702 GGGGTGGTGCTGCTTCCT 61.972 66.667 13.47 0.00 0.00 3.36
4049 4934 4.821805 AGTACATGAGTGGAGTGGTTTTTG 59.178 41.667 0.00 0.00 0.00 2.44
4068 4953 5.857268 TGGGGACTAGTTTGTTGTAAGTAC 58.143 41.667 0.00 0.00 0.00 2.73
4072 4957 5.633655 TTCTGGGGACTAGTTTGTTGTAA 57.366 39.130 0.00 0.00 0.00 2.41
4172 5085 1.414866 TACAGCTGGGTCCACAAGCA 61.415 55.000 19.93 0.00 0.00 3.91
4187 5100 4.097437 TCCCTACTATTCACACGCTTACAG 59.903 45.833 0.00 0.00 0.00 2.74
4196 5109 6.617784 TGGATATGGTTTCCCTACTATTCACA 59.382 38.462 0.00 0.00 31.87 3.58
4200 5113 5.914716 TGGTGGATATGGTTTCCCTACTATT 59.085 40.000 0.00 0.00 31.87 1.73
4207 5120 2.291930 TGGTTGGTGGATATGGTTTCCC 60.292 50.000 0.00 0.00 31.87 3.97
4208 5121 2.758423 GTGGTTGGTGGATATGGTTTCC 59.242 50.000 0.00 0.00 0.00 3.13
4213 5126 1.284785 AGTGGTGGTTGGTGGATATGG 59.715 52.381 0.00 0.00 0.00 2.74
4241 5154 1.300266 GCAAACACATGGCATTGGGC 61.300 55.000 0.00 2.98 43.74 5.36
4253 5166 0.823356 TGAGGCCCAAGAGCAAACAC 60.823 55.000 0.00 0.00 0.00 3.32
4280 5193 2.867624 ACAAAAGCTTCAGCCATCTCA 58.132 42.857 0.00 0.00 43.38 3.27
4310 5223 2.268920 GATTCCACCCAGCAGCGA 59.731 61.111 0.00 0.00 0.00 4.93
4311 5224 2.110967 CAGATTCCACCCAGCAGCG 61.111 63.158 0.00 0.00 0.00 5.18
4315 5228 0.038166 TTCACCAGATTCCACCCAGC 59.962 55.000 0.00 0.00 0.00 4.85
4316 5229 2.584835 TTTCACCAGATTCCACCCAG 57.415 50.000 0.00 0.00 0.00 4.45
4326 5239 6.234177 ACACCAAAACAAAAATTTCACCAGA 58.766 32.000 0.00 0.00 0.00 3.86
4335 5248 4.195225 ACCACGACACCAAAACAAAAAT 57.805 36.364 0.00 0.00 0.00 1.82
4336 5249 3.662247 ACCACGACACCAAAACAAAAA 57.338 38.095 0.00 0.00 0.00 1.94
4342 5255 6.506500 TTTAGTTAAACCACGACACCAAAA 57.493 33.333 0.00 0.00 0.00 2.44
4344 5257 5.647225 AGTTTTAGTTAAACCACGACACCAA 59.353 36.000 1.25 0.00 45.92 3.67
4345 5258 5.184711 AGTTTTAGTTAAACCACGACACCA 58.815 37.500 1.25 0.00 45.92 4.17
4346 5259 5.739752 AGTTTTAGTTAAACCACGACACC 57.260 39.130 1.25 0.00 45.92 4.16
4350 5263 5.757808 GGTGGTAGTTTTAGTTAAACCACGA 59.242 40.000 14.34 0.00 45.92 4.35
4351 5264 5.526846 TGGTGGTAGTTTTAGTTAAACCACG 59.473 40.000 14.34 0.00 45.92 4.94
4352 5265 6.318396 TGTGGTGGTAGTTTTAGTTAAACCAC 59.682 38.462 12.82 12.82 45.92 4.16
4353 5266 6.421485 TGTGGTGGTAGTTTTAGTTAAACCA 58.579 36.000 1.25 0.00 45.92 3.67
4354 5267 6.940831 TGTGGTGGTAGTTTTAGTTAAACC 57.059 37.500 1.25 0.00 45.92 3.27
4355 5268 9.454585 GAATTGTGGTGGTAGTTTTAGTTAAAC 57.545 33.333 0.00 0.00 45.26 2.01
4368 5281 5.966853 TGGATCATAGAATTGTGGTGGTA 57.033 39.130 0.00 0.00 0.00 3.25
4371 5284 4.581409 TGCATGGATCATAGAATTGTGGTG 59.419 41.667 0.00 0.00 0.00 4.17
4374 5287 6.347160 CGTACTGCATGGATCATAGAATTGTG 60.347 42.308 0.00 0.00 0.00 3.33
4376 5289 5.121298 CCGTACTGCATGGATCATAGAATTG 59.879 44.000 0.00 0.00 34.93 2.32
4396 5309 4.021456 TCTGAAGAAGAAACTGATGCCGTA 60.021 41.667 0.00 0.00 29.54 4.02
4403 5316 2.705658 TGGCCTCTGAAGAAGAAACTGA 59.294 45.455 3.32 0.00 33.37 3.41
4419 5332 1.221840 CACTCATAACCGCTGGCCT 59.778 57.895 3.32 0.00 0.00 5.19
4420 5333 0.392461 TTCACTCATAACCGCTGGCC 60.392 55.000 0.00 0.00 0.00 5.36
4433 5346 7.442666 GGATAGACCCATTGATAAAGTTCACTC 59.557 40.741 0.00 0.00 0.00 3.51
4447 5362 6.043706 CCTCTTTATCACAGGATAGACCCATT 59.956 42.308 0.00 0.00 37.31 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.