Multiple sequence alignment - TraesCS3B01G594900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G594900 chr3B 100.000 3860 0 0 1 3860 818141554 818137695 0.000000e+00 7129.0
1 TraesCS3B01G594900 chr3B 83.516 1092 147 17 1585 2669 818153628 818154693 0.000000e+00 989.0
2 TraesCS3B01G594900 chr3B 97.649 553 13 0 59 611 818153758 818153206 0.000000e+00 950.0
3 TraesCS3B01G594900 chr3B 86.207 667 82 8 1012 1670 817901767 817902431 0.000000e+00 713.0
4 TraesCS3B01G594900 chr3B 82.424 495 78 5 233 723 296142637 296143126 1.280000e-114 424.0
5 TraesCS3B01G594900 chr3B 83.660 153 23 2 3710 3860 818331989 818332141 4.020000e-30 143.0
6 TraesCS3B01G594900 chr3B 84.722 144 20 2 3713 3855 819039072 819038930 4.020000e-30 143.0
7 TraesCS3B01G594900 chr3B 92.500 80 3 1 103 182 817902430 817902354 1.130000e-20 111.0
8 TraesCS3B01G594900 chr3B 78.000 150 25 8 995 1140 818319442 818319587 1.910000e-13 87.9
9 TraesCS3B01G594900 chr3A 93.643 1872 114 1 970 2841 740811990 740810124 0.000000e+00 2793.0
10 TraesCS3B01G594900 chr3A 94.606 964 45 5 2901 3858 740810124 740809162 0.000000e+00 1485.0
11 TraesCS3B01G594900 chr3A 84.705 1373 175 16 961 2308 741093224 741094586 0.000000e+00 1339.0
12 TraesCS3B01G594900 chr3A 83.454 1106 145 27 2304 3377 741116782 741117881 0.000000e+00 994.0
13 TraesCS3B01G594900 chr3A 83.254 1051 119 32 2315 3337 740396536 740397557 0.000000e+00 913.0
14 TraesCS3B01G594900 chr3A 85.850 735 91 5 1478 2207 740394296 740395022 0.000000e+00 769.0
15 TraesCS3B01G594900 chr3A 93.103 145 10 0 59 203 740394528 740394384 3.020000e-51 213.0
16 TraesCS3B01G594900 chr3A 91.111 135 12 0 961 1095 741109861 741109995 2.370000e-42 183.0
17 TraesCS3B01G594900 chr3A 88.235 119 11 1 66 184 740811254 740811369 5.200000e-29 139.0
18 TraesCS3B01G594900 chr3D 84.283 2386 288 35 989 3337 608206862 608209197 0.000000e+00 2248.0
19 TraesCS3B01G594900 chr3D 82.838 1515 196 28 796 2296 608178499 608177035 0.000000e+00 1299.0
20 TraesCS3B01G594900 chr3D 83.980 799 92 21 2295 3068 608176935 608176148 0.000000e+00 734.0
21 TraesCS3B01G594900 chr3D 82.604 868 92 31 978 1826 608434402 608433575 0.000000e+00 712.0
22 TraesCS3B01G594900 chr3D 84.527 698 75 14 977 1650 608329224 608328536 0.000000e+00 660.0
23 TraesCS3B01G594900 chr3D 80.402 796 124 27 2303 3080 608427192 608426411 9.300000e-161 577.0
24 TraesCS3B01G594900 chr3D 83.663 404 66 0 319 722 337985293 337985696 7.830000e-102 381.0
25 TraesCS3B01G594900 chr3D 81.031 485 87 2 238 722 337990682 337991161 7.830000e-102 381.0
26 TraesCS3B01G594900 chr3D 81.250 448 59 10 1659 2106 608309555 608309133 4.780000e-89 339.0
27 TraesCS3B01G594900 chr3D 92.806 139 10 0 65 203 608207577 608207439 6.540000e-48 202.0
28 TraesCS3B01G594900 chr3D 89.431 123 9 2 66 187 608433701 608433820 6.680000e-33 152.0
29 TraesCS3B01G594900 chrUn 82.744 1443 191 24 867 2296 327255730 327257127 0.000000e+00 1232.0
30 TraesCS3B01G594900 chrUn 84.105 799 90 22 2295 3068 327257227 327258013 0.000000e+00 737.0
31 TraesCS3B01G594900 chrUn 85.289 605 76 8 867 1470 422364032 422363440 2.550000e-171 612.0
32 TraesCS3B01G594900 chrUn 82.021 673 79 19 2518 3150 43117917 43117247 5.680000e-148 534.0
33 TraesCS3B01G594900 chrUn 82.515 652 72 19 2518 3129 43143537 43144186 5.680000e-148 534.0
34 TraesCS3B01G594900 chrUn 82.700 526 82 3 1773 2296 43118726 43118208 3.510000e-125 459.0
35 TraesCS3B01G594900 chrUn 82.632 380 66 0 1773 2152 468278017 468277638 1.720000e-88 337.0
36 TraesCS3B01G594900 chrUn 83.489 321 45 6 234 549 345949978 345950295 3.770000e-75 292.0
37 TraesCS3B01G594900 chrUn 84.459 148 14 3 2151 2296 433383017 433382877 1.870000e-28 137.0
38 TraesCS3B01G594900 chr7D 87.243 486 43 4 237 722 161433135 161432669 1.580000e-148 536.0
39 TraesCS3B01G594900 chr7D 86.420 486 48 5 237 722 161451778 161451311 2.060000e-142 516.0
40 TraesCS3B01G594900 chr5D 84.948 485 72 1 238 722 299075106 299075589 1.250000e-134 490.0
41 TraesCS3B01G594900 chr5A 82.209 489 80 6 238 722 333735799 333735314 7.720000e-112 414.0
42 TraesCS3B01G594900 chr7A 81.762 488 82 7 238 722 231079532 231079049 6.010000e-108 401.0
43 TraesCS3B01G594900 chr7A 90.000 60 5 1 4 62 70142170 70142229 4.140000e-10 76.8
44 TraesCS3B01G594900 chr4A 81.109 487 74 8 238 722 621013446 621013916 1.310000e-99 374.0
45 TraesCS3B01G594900 chr6B 96.610 59 2 0 1 59 710267019 710266961 8.830000e-17 99.0
46 TraesCS3B01G594900 chr4B 93.103 58 4 0 1 58 517080140 517080197 6.870000e-13 86.1
47 TraesCS3B01G594900 chr1B 88.136 59 7 0 4 62 554246518 554246460 1.920000e-08 71.3
48 TraesCS3B01G594900 chr1B 100.000 29 0 0 30 58 645964649 645964621 2.000000e-03 54.7
49 TraesCS3B01G594900 chr2D 93.478 46 3 0 14 59 91392196 91392151 6.920000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G594900 chr3B 818137695 818141554 3859 True 7129.0 7129 100.0000 1 3860 1 chr3B.!!$R2 3859
1 TraesCS3B01G594900 chr3B 818153628 818154693 1065 False 989.0 989 83.5160 1585 2669 1 chr3B.!!$F3 1084
2 TraesCS3B01G594900 chr3B 818153206 818153758 552 True 950.0 950 97.6490 59 611 1 chr3B.!!$R3 552
3 TraesCS3B01G594900 chr3B 817901767 817902431 664 False 713.0 713 86.2070 1012 1670 1 chr3B.!!$F2 658
4 TraesCS3B01G594900 chr3A 740809162 740811990 2828 True 2139.0 2793 94.1245 970 3858 2 chr3A.!!$R2 2888
5 TraesCS3B01G594900 chr3A 741093224 741094586 1362 False 1339.0 1339 84.7050 961 2308 1 chr3A.!!$F2 1347
6 TraesCS3B01G594900 chr3A 741116782 741117881 1099 False 994.0 994 83.4540 2304 3377 1 chr3A.!!$F4 1073
7 TraesCS3B01G594900 chr3A 740394296 740397557 3261 False 841.0 913 84.5520 1478 3337 2 chr3A.!!$F5 1859
8 TraesCS3B01G594900 chr3D 608206862 608209197 2335 False 2248.0 2248 84.2830 989 3337 1 chr3D.!!$F3 2348
9 TraesCS3B01G594900 chr3D 608176148 608178499 2351 True 1016.5 1299 83.4090 796 3068 2 chr3D.!!$R6 2272
10 TraesCS3B01G594900 chr3D 608433575 608434402 827 True 712.0 712 82.6040 978 1826 1 chr3D.!!$R5 848
11 TraesCS3B01G594900 chr3D 608328536 608329224 688 True 660.0 660 84.5270 977 1650 1 chr3D.!!$R3 673
12 TraesCS3B01G594900 chr3D 608426411 608427192 781 True 577.0 577 80.4020 2303 3080 1 chr3D.!!$R4 777
13 TraesCS3B01G594900 chrUn 327255730 327258013 2283 False 984.5 1232 83.4245 867 3068 2 chrUn.!!$F3 2201
14 TraesCS3B01G594900 chrUn 422363440 422364032 592 True 612.0 612 85.2890 867 1470 1 chrUn.!!$R1 603
15 TraesCS3B01G594900 chrUn 43143537 43144186 649 False 534.0 534 82.5150 2518 3129 1 chrUn.!!$F1 611
16 TraesCS3B01G594900 chrUn 43117247 43118726 1479 True 496.5 534 82.3605 1773 3150 2 chrUn.!!$R4 1377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.034896 AACCCGGTTCTGCACTAGTG 59.965 55.0 18.93 18.93 0.00 2.74 F
1605 1664 0.038159 GGACCTGGTCACTTCGTCAG 60.038 60.0 26.94 0.00 33.68 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1767 0.035317 TTGACAAGCTCATCGCAGGT 59.965 50.0 0.0 0.0 42.61 4.00 R
3411 5137 0.245539 TGGTGGACGCAGCTACTAAC 59.754 55.0 0.0 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.551644 CCAACCGGCACTAAAGACC 58.448 57.895 0.00 0.00 0.00 3.85
20 21 1.296056 CCAACCGGCACTAAAGACCG 61.296 60.000 0.00 8.57 46.50 4.79
21 22 1.670083 AACCGGCACTAAAGACCGC 60.670 57.895 0.00 0.00 45.58 5.68
22 23 2.818274 CCGGCACTAAAGACCGCC 60.818 66.667 9.66 0.00 45.58 6.13
23 24 2.047655 CGGCACTAAAGACCGCCA 60.048 61.111 0.00 0.00 45.14 5.69
24 25 2.388232 CGGCACTAAAGACCGCCAC 61.388 63.158 0.00 0.00 45.14 5.01
25 26 2.388232 GGCACTAAAGACCGCCACG 61.388 63.158 0.00 0.00 44.25 4.94
26 27 1.373748 GCACTAAAGACCGCCACGA 60.374 57.895 0.00 0.00 0.00 4.35
27 28 0.947180 GCACTAAAGACCGCCACGAA 60.947 55.000 0.00 0.00 0.00 3.85
28 29 0.788391 CACTAAAGACCGCCACGAAC 59.212 55.000 0.00 0.00 0.00 3.95
29 30 0.320160 ACTAAAGACCGCCACGAACC 60.320 55.000 0.00 0.00 0.00 3.62
30 31 1.349259 CTAAAGACCGCCACGAACCG 61.349 60.000 0.00 0.00 0.00 4.44
38 39 4.364817 CCACGAACCGGCACTAAA 57.635 55.556 0.00 0.00 0.00 1.85
39 40 2.619362 CCACGAACCGGCACTAAAA 58.381 52.632 0.00 0.00 0.00 1.52
40 41 0.236449 CCACGAACCGGCACTAAAAC 59.764 55.000 0.00 0.00 0.00 2.43
41 42 0.236449 CACGAACCGGCACTAAAACC 59.764 55.000 0.00 0.00 0.00 3.27
42 43 0.886043 ACGAACCGGCACTAAAACCC 60.886 55.000 0.00 0.00 0.00 4.11
43 44 1.871077 GAACCGGCACTAAAACCCG 59.129 57.895 0.00 0.00 41.60 5.28
46 47 4.068280 CGGCACTAAAACCCGGTT 57.932 55.556 0.00 0.00 38.42 4.44
47 48 1.871077 CGGCACTAAAACCCGGTTC 59.129 57.895 2.46 0.00 38.42 3.62
48 49 0.604511 CGGCACTAAAACCCGGTTCT 60.605 55.000 2.46 0.00 38.42 3.01
49 50 0.879090 GGCACTAAAACCCGGTTCTG 59.121 55.000 2.46 0.00 0.00 3.02
50 51 0.240145 GCACTAAAACCCGGTTCTGC 59.760 55.000 2.46 5.04 0.00 4.26
51 52 1.600023 CACTAAAACCCGGTTCTGCA 58.400 50.000 2.46 0.00 0.00 4.41
52 53 1.265905 CACTAAAACCCGGTTCTGCAC 59.734 52.381 2.46 0.00 0.00 4.57
53 54 1.142262 ACTAAAACCCGGTTCTGCACT 59.858 47.619 2.46 0.00 0.00 4.40
54 55 2.369532 ACTAAAACCCGGTTCTGCACTA 59.630 45.455 2.46 0.00 0.00 2.74
55 56 1.892209 AAAACCCGGTTCTGCACTAG 58.108 50.000 2.46 0.00 0.00 2.57
56 57 0.763035 AAACCCGGTTCTGCACTAGT 59.237 50.000 2.46 0.00 0.00 2.57
57 58 0.034896 AACCCGGTTCTGCACTAGTG 59.965 55.000 18.93 18.93 0.00 2.74
211 212 4.280425 GGTAGCGAAACTAATAGTAGGCCT 59.720 45.833 11.78 11.78 30.90 5.19
295 296 1.262640 GGCCTCCGAAACTCCACCTA 61.263 60.000 0.00 0.00 0.00 3.08
304 305 3.933332 CGAAACTCCACCTATTTGAGTCC 59.067 47.826 0.00 0.00 38.36 3.85
309 310 4.466726 ACTCCACCTATTTGAGTCCTGTAC 59.533 45.833 0.00 0.00 34.33 2.90
312 313 3.446161 CACCTATTTGAGTCCTGTACGGA 59.554 47.826 2.31 2.61 40.30 4.69
357 358 2.573869 GCTCAGCGTGGCTACTGA 59.426 61.111 0.00 0.00 40.54 3.41
369 370 3.064545 GTGGCTACTGATTGCTTCATCAC 59.935 47.826 0.00 0.00 32.72 3.06
370 371 2.286294 GGCTACTGATTGCTTCATCACG 59.714 50.000 0.00 0.00 32.72 4.35
371 372 2.286294 GCTACTGATTGCTTCATCACGG 59.714 50.000 0.00 0.00 32.72 4.94
372 373 2.768253 ACTGATTGCTTCATCACGGA 57.232 45.000 0.00 0.00 32.72 4.69
373 374 2.350522 ACTGATTGCTTCATCACGGAC 58.649 47.619 0.00 0.00 32.72 4.79
374 375 1.325640 CTGATTGCTTCATCACGGACG 59.674 52.381 0.00 0.00 32.72 4.79
375 376 1.067213 TGATTGCTTCATCACGGACGA 60.067 47.619 0.00 0.00 0.00 4.20
376 377 1.324736 GATTGCTTCATCACGGACGAC 59.675 52.381 0.00 0.00 0.00 4.34
377 378 0.669318 TTGCTTCATCACGGACGACC 60.669 55.000 0.00 0.00 0.00 4.79
378 379 1.810030 GCTTCATCACGGACGACCC 60.810 63.158 0.00 0.00 0.00 4.46
397 398 3.691110 GGACACCGACGACTACTTC 57.309 57.895 0.00 0.00 0.00 3.01
398 399 0.169894 GGACACCGACGACTACTTCC 59.830 60.000 0.00 0.00 0.00 3.46
399 400 0.169894 GACACCGACGACTACTTCCC 59.830 60.000 0.00 0.00 0.00 3.97
400 401 1.246737 ACACCGACGACTACTTCCCC 61.247 60.000 0.00 0.00 0.00 4.81
401 402 1.075482 ACCGACGACTACTTCCCCA 59.925 57.895 0.00 0.00 0.00 4.96
402 403 0.540365 ACCGACGACTACTTCCCCAA 60.540 55.000 0.00 0.00 0.00 4.12
403 404 0.108945 CCGACGACTACTTCCCCAAC 60.109 60.000 0.00 0.00 0.00 3.77
404 405 0.455633 CGACGACTACTTCCCCAACG 60.456 60.000 0.00 0.00 0.00 4.10
405 406 0.883833 GACGACTACTTCCCCAACGA 59.116 55.000 0.00 0.00 0.00 3.85
406 407 1.475682 GACGACTACTTCCCCAACGAT 59.524 52.381 0.00 0.00 0.00 3.73
407 408 1.203994 ACGACTACTTCCCCAACGATG 59.796 52.381 0.00 0.00 0.00 3.84
408 409 1.475280 CGACTACTTCCCCAACGATGA 59.525 52.381 0.00 0.00 0.00 2.92
409 410 2.734492 CGACTACTTCCCCAACGATGAC 60.734 54.545 0.00 0.00 0.00 3.06
410 411 2.496470 GACTACTTCCCCAACGATGACT 59.504 50.000 0.00 0.00 0.00 3.41
411 412 2.904434 ACTACTTCCCCAACGATGACTT 59.096 45.455 0.00 0.00 0.00 3.01
412 413 2.474410 ACTTCCCCAACGATGACTTC 57.526 50.000 0.00 0.00 0.00 3.01
413 414 1.978580 ACTTCCCCAACGATGACTTCT 59.021 47.619 0.00 0.00 0.00 2.85
414 415 2.372172 ACTTCCCCAACGATGACTTCTT 59.628 45.455 0.00 0.00 0.00 2.52
415 416 2.762535 TCCCCAACGATGACTTCTTC 57.237 50.000 0.00 0.00 0.00 2.87
416 417 1.278127 TCCCCAACGATGACTTCTTCC 59.722 52.381 0.00 0.00 0.00 3.46
417 418 1.679032 CCCCAACGATGACTTCTTCCC 60.679 57.143 0.00 0.00 0.00 3.97
418 419 1.679032 CCCAACGATGACTTCTTCCCC 60.679 57.143 0.00 0.00 0.00 4.81
419 420 1.359848 CAACGATGACTTCTTCCCCG 58.640 55.000 0.00 0.00 0.00 5.73
420 421 0.249398 AACGATGACTTCTTCCCCGG 59.751 55.000 0.00 0.00 0.00 5.73
421 422 1.521681 CGATGACTTCTTCCCCGGC 60.522 63.158 0.00 0.00 0.00 6.13
422 423 1.521681 GATGACTTCTTCCCCGGCG 60.522 63.158 0.00 0.00 0.00 6.46
423 424 2.240162 GATGACTTCTTCCCCGGCGT 62.240 60.000 6.01 0.00 0.00 5.68
424 425 2.125633 GACTTCTTCCCCGGCGTC 60.126 66.667 6.01 0.00 0.00 5.19
425 426 3.984200 GACTTCTTCCCCGGCGTCG 62.984 68.421 0.29 0.29 0.00 5.12
426 427 3.755628 CTTCTTCCCCGGCGTCGA 61.756 66.667 12.93 0.00 39.00 4.20
427 428 3.984200 CTTCTTCCCCGGCGTCGAC 62.984 68.421 12.93 5.18 39.00 4.20
429 430 4.367023 CTTCCCCGGCGTCGACAA 62.367 66.667 12.93 0.00 39.00 3.18
430 431 4.668118 TTCCCCGGCGTCGACAAC 62.668 66.667 12.93 6.70 39.00 3.32
434 435 4.052229 CCGGCGTCGACAACCTCT 62.052 66.667 12.93 0.00 39.00 3.69
435 436 2.049433 CGGCGTCGACAACCTCTT 60.049 61.111 17.16 0.00 39.00 2.85
436 437 2.087009 CGGCGTCGACAACCTCTTC 61.087 63.158 17.16 0.00 39.00 2.87
437 438 2.087009 GGCGTCGACAACCTCTTCG 61.087 63.158 17.16 0.00 36.55 3.79
438 439 1.081641 GCGTCGACAACCTCTTCGA 60.082 57.895 17.16 0.00 41.83 3.71
442 443 2.129823 TCGACAACCTCTTCGACAAC 57.870 50.000 0.00 0.00 39.29 3.32
443 444 1.406180 TCGACAACCTCTTCGACAACA 59.594 47.619 0.00 0.00 39.29 3.33
444 445 2.035449 TCGACAACCTCTTCGACAACAT 59.965 45.455 0.00 0.00 39.29 2.71
445 446 2.155732 CGACAACCTCTTCGACAACATG 59.844 50.000 0.00 0.00 37.43 3.21
446 447 3.390135 GACAACCTCTTCGACAACATGA 58.610 45.455 0.00 0.00 0.00 3.07
447 448 3.131396 ACAACCTCTTCGACAACATGAC 58.869 45.455 0.00 0.00 0.00 3.06
448 449 3.181465 ACAACCTCTTCGACAACATGACT 60.181 43.478 0.00 0.00 0.00 3.41
449 450 4.038763 ACAACCTCTTCGACAACATGACTA 59.961 41.667 0.00 0.00 0.00 2.59
450 451 4.866508 ACCTCTTCGACAACATGACTAA 57.133 40.909 0.00 0.00 0.00 2.24
451 452 5.209818 ACCTCTTCGACAACATGACTAAA 57.790 39.130 0.00 0.00 0.00 1.85
452 453 5.230942 ACCTCTTCGACAACATGACTAAAG 58.769 41.667 0.00 0.00 0.00 1.85
453 454 5.010719 ACCTCTTCGACAACATGACTAAAGA 59.989 40.000 0.00 0.21 0.00 2.52
454 455 5.574830 CCTCTTCGACAACATGACTAAAGAG 59.425 44.000 0.00 9.49 38.65 2.85
455 456 5.470368 TCTTCGACAACATGACTAAAGAGG 58.530 41.667 0.00 0.00 0.00 3.69
456 457 5.243060 TCTTCGACAACATGACTAAAGAGGA 59.757 40.000 0.00 0.00 0.00 3.71
457 458 4.806330 TCGACAACATGACTAAAGAGGAC 58.194 43.478 0.00 0.00 0.00 3.85
458 459 4.279922 TCGACAACATGACTAAAGAGGACA 59.720 41.667 0.00 0.00 0.00 4.02
459 460 4.386049 CGACAACATGACTAAAGAGGACAC 59.614 45.833 0.00 0.00 0.00 3.67
460 461 4.642429 ACAACATGACTAAAGAGGACACC 58.358 43.478 0.00 0.00 0.00 4.16
461 462 4.102524 ACAACATGACTAAAGAGGACACCA 59.897 41.667 0.00 0.00 0.00 4.17
462 463 4.974645 ACATGACTAAAGAGGACACCAA 57.025 40.909 0.00 0.00 0.00 3.67
463 464 4.642429 ACATGACTAAAGAGGACACCAAC 58.358 43.478 0.00 0.00 0.00 3.77
464 465 4.348168 ACATGACTAAAGAGGACACCAACT 59.652 41.667 0.00 0.00 0.00 3.16
465 466 4.602340 TGACTAAAGAGGACACCAACTC 57.398 45.455 0.00 0.00 0.00 3.01
466 467 3.323979 TGACTAAAGAGGACACCAACTCC 59.676 47.826 0.00 0.00 34.27 3.85
467 468 3.314693 ACTAAAGAGGACACCAACTCCA 58.685 45.455 0.00 0.00 34.27 3.86
468 469 3.714798 ACTAAAGAGGACACCAACTCCAA 59.285 43.478 0.00 0.00 34.27 3.53
469 470 2.938956 AAGAGGACACCAACTCCAAG 57.061 50.000 0.00 0.00 34.27 3.61
470 471 2.103153 AGAGGACACCAACTCCAAGA 57.897 50.000 0.00 0.00 34.27 3.02
471 472 1.694696 AGAGGACACCAACTCCAAGAC 59.305 52.381 0.00 0.00 34.27 3.01
472 473 0.765510 AGGACACCAACTCCAAGACC 59.234 55.000 0.00 0.00 0.00 3.85
473 474 0.602905 GGACACCAACTCCAAGACCG 60.603 60.000 0.00 0.00 0.00 4.79
474 475 0.602905 GACACCAACTCCAAGACCGG 60.603 60.000 0.00 0.00 0.00 5.28
475 476 1.342672 ACACCAACTCCAAGACCGGT 61.343 55.000 6.92 6.92 0.00 5.28
476 477 0.682852 CACCAACTCCAAGACCGGTA 59.317 55.000 7.34 0.00 0.00 4.02
477 478 0.683412 ACCAACTCCAAGACCGGTAC 59.317 55.000 7.34 0.60 0.00 3.34
478 479 0.974383 CCAACTCCAAGACCGGTACT 59.026 55.000 7.34 3.50 0.00 2.73
479 480 1.346722 CCAACTCCAAGACCGGTACTT 59.653 52.381 7.34 10.40 0.00 2.24
480 481 2.612221 CCAACTCCAAGACCGGTACTTC 60.612 54.545 7.34 0.00 0.00 3.01
481 482 2.299297 CAACTCCAAGACCGGTACTTCT 59.701 50.000 7.34 0.00 0.00 2.85
482 483 1.893801 ACTCCAAGACCGGTACTTCTG 59.106 52.381 7.34 6.77 0.00 3.02
483 484 0.606604 TCCAAGACCGGTACTTCTGC 59.393 55.000 7.34 0.00 0.00 4.26
484 485 0.391263 CCAAGACCGGTACTTCTGCC 60.391 60.000 7.34 0.00 0.00 4.85
485 486 0.736325 CAAGACCGGTACTTCTGCCG 60.736 60.000 7.34 0.00 46.80 5.69
486 487 1.183676 AAGACCGGTACTTCTGCCGT 61.184 55.000 7.34 0.00 45.91 5.68
487 488 1.183676 AGACCGGTACTTCTGCCGTT 61.184 55.000 7.34 0.00 45.91 4.44
488 489 1.005394 ACCGGTACTTCTGCCGTTG 60.005 57.895 4.49 0.00 45.91 4.10
489 490 2.388232 CCGGTACTTCTGCCGTTGC 61.388 63.158 0.00 0.00 45.91 4.17
490 491 1.374252 CGGTACTTCTGCCGTTGCT 60.374 57.895 0.00 0.00 42.73 3.91
491 492 1.352156 CGGTACTTCTGCCGTTGCTC 61.352 60.000 0.00 0.00 42.73 4.26
492 493 1.019805 GGTACTTCTGCCGTTGCTCC 61.020 60.000 0.00 0.00 38.71 4.70
493 494 1.080093 TACTTCTGCCGTTGCTCCG 60.080 57.895 0.00 0.00 38.71 4.63
494 495 1.812686 TACTTCTGCCGTTGCTCCGT 61.813 55.000 0.00 0.00 38.71 4.69
495 496 1.080093 CTTCTGCCGTTGCTCCGTA 60.080 57.895 0.00 0.00 38.71 4.02
496 497 1.352156 CTTCTGCCGTTGCTCCGTAC 61.352 60.000 0.00 0.00 38.71 3.67
497 498 3.179265 CTGCCGTTGCTCCGTACG 61.179 66.667 8.69 8.69 38.71 3.67
498 499 3.909258 CTGCCGTTGCTCCGTACGT 62.909 63.158 15.21 0.00 38.71 3.57
499 500 3.177249 GCCGTTGCTCCGTACGTC 61.177 66.667 15.21 3.55 36.09 4.34
500 501 2.564975 CCGTTGCTCCGTACGTCT 59.435 61.111 15.21 0.00 36.09 4.18
501 502 1.080974 CCGTTGCTCCGTACGTCTT 60.081 57.895 15.21 0.00 36.09 3.01
502 503 1.069378 CCGTTGCTCCGTACGTCTTC 61.069 60.000 15.21 0.98 36.09 2.87
503 504 1.393597 CGTTGCTCCGTACGTCTTCG 61.394 60.000 15.21 7.37 43.34 3.79
515 516 2.708386 CGTCTTCGTGACCTCTCTTT 57.292 50.000 5.93 0.00 42.49 2.52
516 517 3.014604 CGTCTTCGTGACCTCTCTTTT 57.985 47.619 5.93 0.00 42.49 2.27
517 518 3.381949 CGTCTTCGTGACCTCTCTTTTT 58.618 45.455 5.93 0.00 42.49 1.94
518 519 4.543692 CGTCTTCGTGACCTCTCTTTTTA 58.456 43.478 5.93 0.00 42.49 1.52
519 520 4.980434 CGTCTTCGTGACCTCTCTTTTTAA 59.020 41.667 5.93 0.00 42.49 1.52
520 521 5.117287 CGTCTTCGTGACCTCTCTTTTTAAG 59.883 44.000 5.93 0.00 42.49 1.85
521 522 6.214399 GTCTTCGTGACCTCTCTTTTTAAGA 58.786 40.000 1.01 0.00 39.69 2.10
522 523 6.869388 GTCTTCGTGACCTCTCTTTTTAAGAT 59.131 38.462 0.00 0.00 39.69 2.40
523 524 7.062488 GTCTTCGTGACCTCTCTTTTTAAGATC 59.938 40.741 0.00 0.00 39.69 2.75
524 525 6.340962 TCGTGACCTCTCTTTTTAAGATCA 57.659 37.500 0.00 0.00 36.82 2.92
525 526 6.936279 TCGTGACCTCTCTTTTTAAGATCAT 58.064 36.000 0.00 0.00 36.82 2.45
526 527 6.813649 TCGTGACCTCTCTTTTTAAGATCATG 59.186 38.462 0.00 0.00 36.82 3.07
527 528 6.456181 CGTGACCTCTCTTTTTAAGATCATGC 60.456 42.308 0.00 0.00 36.82 4.06
528 529 6.597280 GTGACCTCTCTTTTTAAGATCATGCT 59.403 38.462 0.00 0.00 36.82 3.79
529 530 7.766278 GTGACCTCTCTTTTTAAGATCATGCTA 59.234 37.037 0.00 0.00 36.82 3.49
530 531 7.766278 TGACCTCTCTTTTTAAGATCATGCTAC 59.234 37.037 0.00 0.00 36.82 3.58
531 532 7.624549 ACCTCTCTTTTTAAGATCATGCTACA 58.375 34.615 0.00 0.00 36.82 2.74
532 533 7.768120 ACCTCTCTTTTTAAGATCATGCTACAG 59.232 37.037 0.00 0.00 36.82 2.74
533 534 7.768120 CCTCTCTTTTTAAGATCATGCTACAGT 59.232 37.037 0.00 0.00 36.82 3.55
534 535 9.160496 CTCTCTTTTTAAGATCATGCTACAGTT 57.840 33.333 0.00 0.00 36.82 3.16
535 536 9.507329 TCTCTTTTTAAGATCATGCTACAGTTT 57.493 29.630 0.00 0.00 36.82 2.66
540 541 9.787532 TTTTAAGATCATGCTACAGTTTATTGC 57.212 29.630 0.00 0.00 0.00 3.56
541 542 8.737168 TTAAGATCATGCTACAGTTTATTGCT 57.263 30.769 0.00 0.00 0.00 3.91
542 543 6.857777 AGATCATGCTACAGTTTATTGCTC 57.142 37.500 0.00 0.00 0.00 4.26
543 544 6.590068 AGATCATGCTACAGTTTATTGCTCT 58.410 36.000 0.00 0.00 0.00 4.09
544 545 7.730084 AGATCATGCTACAGTTTATTGCTCTA 58.270 34.615 0.00 0.00 0.00 2.43
545 546 7.871973 AGATCATGCTACAGTTTATTGCTCTAG 59.128 37.037 0.00 0.00 0.00 2.43
546 547 6.878317 TCATGCTACAGTTTATTGCTCTAGT 58.122 36.000 0.00 0.00 0.00 2.57
547 548 7.331026 TCATGCTACAGTTTATTGCTCTAGTT 58.669 34.615 0.00 0.00 0.00 2.24
548 549 7.824289 TCATGCTACAGTTTATTGCTCTAGTTT 59.176 33.333 0.00 0.00 0.00 2.66
549 550 7.979444 TGCTACAGTTTATTGCTCTAGTTTT 57.021 32.000 0.00 0.00 0.00 2.43
550 551 8.391075 TGCTACAGTTTATTGCTCTAGTTTTT 57.609 30.769 0.00 0.00 0.00 1.94
551 552 8.504005 TGCTACAGTTTATTGCTCTAGTTTTTC 58.496 33.333 0.00 0.00 0.00 2.29
552 553 8.722394 GCTACAGTTTATTGCTCTAGTTTTTCT 58.278 33.333 0.00 0.00 0.00 2.52
555 556 8.903820 ACAGTTTATTGCTCTAGTTTTTCTTGT 58.096 29.630 0.00 0.00 0.00 3.16
556 557 9.736023 CAGTTTATTGCTCTAGTTTTTCTTGTT 57.264 29.630 0.00 0.00 0.00 2.83
557 558 9.952188 AGTTTATTGCTCTAGTTTTTCTTGTTC 57.048 29.630 0.00 0.00 0.00 3.18
558 559 9.952188 GTTTATTGCTCTAGTTTTTCTTGTTCT 57.048 29.630 0.00 0.00 0.00 3.01
561 562 7.492352 TTGCTCTAGTTTTTCTTGTTCTACC 57.508 36.000 0.00 0.00 0.00 3.18
562 563 5.995897 TGCTCTAGTTTTTCTTGTTCTACCC 59.004 40.000 0.00 0.00 0.00 3.69
563 564 6.183361 TGCTCTAGTTTTTCTTGTTCTACCCT 60.183 38.462 0.00 0.00 0.00 4.34
564 565 6.369340 GCTCTAGTTTTTCTTGTTCTACCCTC 59.631 42.308 0.00 0.00 0.00 4.30
565 566 7.613551 TCTAGTTTTTCTTGTTCTACCCTCT 57.386 36.000 0.00 0.00 0.00 3.69
566 567 7.442656 TCTAGTTTTTCTTGTTCTACCCTCTG 58.557 38.462 0.00 0.00 0.00 3.35
567 568 6.002653 AGTTTTTCTTGTTCTACCCTCTGT 57.997 37.500 0.00 0.00 0.00 3.41
568 569 6.424032 AGTTTTTCTTGTTCTACCCTCTGTT 58.576 36.000 0.00 0.00 0.00 3.16
569 570 6.542735 AGTTTTTCTTGTTCTACCCTCTGTTC 59.457 38.462 0.00 0.00 0.00 3.18
570 571 5.888982 TTTCTTGTTCTACCCTCTGTTCT 57.111 39.130 0.00 0.00 0.00 3.01
571 572 6.989155 TTTCTTGTTCTACCCTCTGTTCTA 57.011 37.500 0.00 0.00 0.00 2.10
572 573 5.979288 TCTTGTTCTACCCTCTGTTCTAC 57.021 43.478 0.00 0.00 0.00 2.59
573 574 5.391256 TCTTGTTCTACCCTCTGTTCTACA 58.609 41.667 0.00 0.00 0.00 2.74
574 575 6.017192 TCTTGTTCTACCCTCTGTTCTACAT 58.983 40.000 0.00 0.00 0.00 2.29
575 576 5.661056 TGTTCTACCCTCTGTTCTACATG 57.339 43.478 0.00 0.00 0.00 3.21
576 577 5.084519 TGTTCTACCCTCTGTTCTACATGT 58.915 41.667 2.69 2.69 0.00 3.21
577 578 5.047306 TGTTCTACCCTCTGTTCTACATGTG 60.047 44.000 9.11 0.00 0.00 3.21
578 579 4.673968 TCTACCCTCTGTTCTACATGTGT 58.326 43.478 9.11 0.00 0.00 3.72
579 580 5.084519 TCTACCCTCTGTTCTACATGTGTT 58.915 41.667 9.11 0.00 0.00 3.32
580 581 6.250711 TCTACCCTCTGTTCTACATGTGTTA 58.749 40.000 9.11 0.00 0.00 2.41
581 582 6.895756 TCTACCCTCTGTTCTACATGTGTTAT 59.104 38.462 9.11 0.00 0.00 1.89
582 583 5.734720 ACCCTCTGTTCTACATGTGTTATG 58.265 41.667 9.11 0.00 0.00 1.90
583 584 5.248477 ACCCTCTGTTCTACATGTGTTATGT 59.752 40.000 9.11 0.00 36.13 2.29
584 585 6.173339 CCCTCTGTTCTACATGTGTTATGTT 58.827 40.000 9.11 0.00 33.76 2.71
585 586 6.655003 CCCTCTGTTCTACATGTGTTATGTTT 59.345 38.462 9.11 0.00 33.76 2.83
586 587 7.174946 CCCTCTGTTCTACATGTGTTATGTTTT 59.825 37.037 9.11 0.00 33.76 2.43
587 588 9.214957 CCTCTGTTCTACATGTGTTATGTTTTA 57.785 33.333 9.11 0.00 33.76 1.52
589 590 9.772973 TCTGTTCTACATGTGTTATGTTTTAGT 57.227 29.630 9.11 0.00 33.76 2.24
594 595 9.549078 TCTACATGTGTTATGTTTTAGTTCACA 57.451 29.630 9.11 0.00 38.39 3.58
600 601 9.110502 TGTGTTATGTTTTAGTTCACATGTACA 57.889 29.630 0.00 0.00 35.24 2.90
601 602 9.938670 GTGTTATGTTTTAGTTCACATGTACAA 57.061 29.630 0.00 0.00 34.14 2.41
605 606 7.922505 TGTTTTAGTTCACATGTACAAATGC 57.077 32.000 0.00 0.00 0.00 3.56
606 607 7.711846 TGTTTTAGTTCACATGTACAAATGCT 58.288 30.769 0.00 0.00 0.00 3.79
607 608 8.841300 TGTTTTAGTTCACATGTACAAATGCTA 58.159 29.630 0.00 0.00 0.00 3.49
608 609 9.840427 GTTTTAGTTCACATGTACAAATGCTAT 57.160 29.630 0.00 0.00 0.00 2.97
612 613 7.538575 AGTTCACATGTACAAATGCTATTTCC 58.461 34.615 0.00 0.00 0.00 3.13
613 614 6.449635 TCACATGTACAAATGCTATTTCCC 57.550 37.500 0.00 0.00 0.00 3.97
614 615 6.186957 TCACATGTACAAATGCTATTTCCCT 58.813 36.000 0.00 0.00 0.00 4.20
615 616 6.663093 TCACATGTACAAATGCTATTTCCCTT 59.337 34.615 0.00 0.00 0.00 3.95
616 617 6.974622 CACATGTACAAATGCTATTTCCCTTC 59.025 38.462 0.00 0.00 0.00 3.46
617 618 6.663093 ACATGTACAAATGCTATTTCCCTTCA 59.337 34.615 0.00 0.00 0.00 3.02
618 619 6.509418 TGTACAAATGCTATTTCCCTTCAC 57.491 37.500 0.00 0.00 0.00 3.18
619 620 6.245408 TGTACAAATGCTATTTCCCTTCACT 58.755 36.000 0.00 0.00 0.00 3.41
620 621 5.904362 ACAAATGCTATTTCCCTTCACTC 57.096 39.130 0.00 0.00 0.00 3.51
621 622 5.574188 ACAAATGCTATTTCCCTTCACTCT 58.426 37.500 0.00 0.00 0.00 3.24
622 623 5.416952 ACAAATGCTATTTCCCTTCACTCTG 59.583 40.000 0.00 0.00 0.00 3.35
623 624 2.991250 TGCTATTTCCCTTCACTCTGC 58.009 47.619 0.00 0.00 0.00 4.26
624 625 2.573462 TGCTATTTCCCTTCACTCTGCT 59.427 45.455 0.00 0.00 0.00 4.24
625 626 3.774766 TGCTATTTCCCTTCACTCTGCTA 59.225 43.478 0.00 0.00 0.00 3.49
626 627 4.141846 TGCTATTTCCCTTCACTCTGCTAG 60.142 45.833 0.00 0.00 0.00 3.42
627 628 4.100189 GCTATTTCCCTTCACTCTGCTAGA 59.900 45.833 0.00 0.00 0.00 2.43
628 629 3.963428 TTTCCCTTCACTCTGCTAGAC 57.037 47.619 0.00 0.00 0.00 2.59
629 630 2.909504 TCCCTTCACTCTGCTAGACT 57.090 50.000 0.00 0.00 0.00 3.24
630 631 4.317530 TTCCCTTCACTCTGCTAGACTA 57.682 45.455 0.00 0.00 0.00 2.59
631 632 3.622630 TCCCTTCACTCTGCTAGACTAC 58.377 50.000 0.00 0.00 0.00 2.73
632 633 3.010250 TCCCTTCACTCTGCTAGACTACA 59.990 47.826 0.00 0.00 0.00 2.74
633 634 3.957497 CCCTTCACTCTGCTAGACTACAT 59.043 47.826 0.00 0.00 0.00 2.29
634 635 4.202101 CCCTTCACTCTGCTAGACTACATG 60.202 50.000 0.00 0.00 0.00 3.21
635 636 4.642437 CCTTCACTCTGCTAGACTACATGA 59.358 45.833 0.00 0.00 0.00 3.07
636 637 5.449862 CCTTCACTCTGCTAGACTACATGAC 60.450 48.000 0.00 0.00 0.00 3.06
637 638 4.849518 TCACTCTGCTAGACTACATGACT 58.150 43.478 0.00 0.00 0.00 3.41
638 639 5.257262 TCACTCTGCTAGACTACATGACTT 58.743 41.667 0.00 0.00 0.00 3.01
639 640 5.124617 TCACTCTGCTAGACTACATGACTTG 59.875 44.000 0.00 0.00 0.00 3.16
640 641 5.013547 ACTCTGCTAGACTACATGACTTGT 58.986 41.667 0.00 0.00 42.62 3.16
641 642 5.478679 ACTCTGCTAGACTACATGACTTGTT 59.521 40.000 0.00 0.00 39.87 2.83
642 643 6.015010 ACTCTGCTAGACTACATGACTTGTTT 60.015 38.462 0.00 0.00 39.87 2.83
643 644 6.390721 TCTGCTAGACTACATGACTTGTTTC 58.609 40.000 0.00 0.00 39.87 2.78
644 645 6.015434 TCTGCTAGACTACATGACTTGTTTCA 60.015 38.462 0.00 0.00 39.87 2.69
645 646 6.701340 TGCTAGACTACATGACTTGTTTCAT 58.299 36.000 0.00 0.00 39.87 2.57
646 647 6.813649 TGCTAGACTACATGACTTGTTTCATC 59.186 38.462 0.00 0.00 39.87 2.92
647 648 7.038659 GCTAGACTACATGACTTGTTTCATCT 58.961 38.462 0.00 1.79 39.87 2.90
648 649 7.221838 GCTAGACTACATGACTTGTTTCATCTC 59.778 40.741 0.00 0.00 39.87 2.75
649 650 7.238486 AGACTACATGACTTGTTTCATCTCT 57.762 36.000 0.00 0.00 39.87 3.10
650 651 8.354711 AGACTACATGACTTGTTTCATCTCTA 57.645 34.615 0.00 0.00 39.87 2.43
651 652 8.976353 AGACTACATGACTTGTTTCATCTCTAT 58.024 33.333 0.00 0.00 39.87 1.98
652 653 9.593134 GACTACATGACTTGTTTCATCTCTATT 57.407 33.333 0.00 0.00 39.87 1.73
731 732 9.325198 TGCTCATATTTCTAACATTGTATTCGT 57.675 29.630 0.00 0.00 0.00 3.85
735 736 9.580916 CATATTTCTAACATTGTATTCGTTCCG 57.419 33.333 0.00 0.00 0.00 4.30
736 737 7.837202 ATTTCTAACATTGTATTCGTTCCGA 57.163 32.000 0.00 0.00 0.00 4.55
737 738 7.837202 TTTCTAACATTGTATTCGTTCCGAT 57.163 32.000 0.00 0.00 35.23 4.18
738 739 8.929827 TTTCTAACATTGTATTCGTTCCGATA 57.070 30.769 0.00 0.00 35.23 2.92
739 740 9.537192 TTTCTAACATTGTATTCGTTCCGATAT 57.463 29.630 0.00 0.00 35.23 1.63
744 745 8.882415 ACATTGTATTCGTTCCGATATAAACT 57.118 30.769 0.00 0.00 35.23 2.66
745 746 8.975439 ACATTGTATTCGTTCCGATATAAACTC 58.025 33.333 0.00 0.00 35.23 3.01
746 747 8.974408 CATTGTATTCGTTCCGATATAAACTCA 58.026 33.333 0.00 0.00 35.23 3.41
747 748 8.570096 TTGTATTCGTTCCGATATAAACTCAG 57.430 34.615 0.00 0.00 35.23 3.35
748 749 7.933396 TGTATTCGTTCCGATATAAACTCAGA 58.067 34.615 0.00 0.00 35.23 3.27
749 750 8.407832 TGTATTCGTTCCGATATAAACTCAGAA 58.592 33.333 0.00 0.00 35.23 3.02
750 751 9.241317 GTATTCGTTCCGATATAAACTCAGAAA 57.759 33.333 0.00 0.00 35.23 2.52
751 752 8.888579 ATTCGTTCCGATATAAACTCAGAAAT 57.111 30.769 0.00 0.00 35.23 2.17
752 753 8.712285 TTCGTTCCGATATAAACTCAGAAATT 57.288 30.769 0.00 0.00 35.23 1.82
753 754 8.126871 TCGTTCCGATATAAACTCAGAAATTG 57.873 34.615 0.00 0.00 0.00 2.32
754 755 7.977293 TCGTTCCGATATAAACTCAGAAATTGA 59.023 33.333 0.00 0.00 0.00 2.57
755 756 8.600625 CGTTCCGATATAAACTCAGAAATTGAA 58.399 33.333 0.00 0.00 34.81 2.69
756 757 9.704098 GTTCCGATATAAACTCAGAAATTGAAC 57.296 33.333 0.00 0.00 34.81 3.18
757 758 8.126871 TCCGATATAAACTCAGAAATTGAACG 57.873 34.615 0.00 0.00 34.81 3.95
758 759 6.846283 CCGATATAAACTCAGAAATTGAACGC 59.154 38.462 0.00 0.00 34.81 4.84
759 760 7.398746 CGATATAAACTCAGAAATTGAACGCA 58.601 34.615 0.00 0.00 34.81 5.24
760 761 7.902917 CGATATAAACTCAGAAATTGAACGCAA 59.097 33.333 0.00 0.00 38.60 4.85
761 762 8.895932 ATATAAACTCAGAAATTGAACGCAAC 57.104 30.769 0.00 0.00 36.72 4.17
762 763 4.630894 AACTCAGAAATTGAACGCAACA 57.369 36.364 0.00 0.00 36.72 3.33
763 764 4.214980 ACTCAGAAATTGAACGCAACAG 57.785 40.909 0.00 0.00 36.72 3.16
764 765 3.876914 ACTCAGAAATTGAACGCAACAGA 59.123 39.130 0.00 0.00 36.72 3.41
765 766 4.516698 ACTCAGAAATTGAACGCAACAGAT 59.483 37.500 0.00 0.00 36.72 2.90
766 767 5.009010 ACTCAGAAATTGAACGCAACAGATT 59.991 36.000 0.00 0.00 36.72 2.40
767 768 5.451908 TCAGAAATTGAACGCAACAGATTC 58.548 37.500 0.00 0.00 36.72 2.52
768 769 5.008514 TCAGAAATTGAACGCAACAGATTCA 59.991 36.000 0.00 0.00 36.72 2.57
769 770 5.686841 CAGAAATTGAACGCAACAGATTCAA 59.313 36.000 1.49 1.49 44.18 2.69
770 771 5.916883 AGAAATTGAACGCAACAGATTCAAG 59.083 36.000 5.07 0.00 43.52 3.02
771 772 2.686558 TGAACGCAACAGATTCAAGC 57.313 45.000 0.00 0.00 29.56 4.01
772 773 2.221169 TGAACGCAACAGATTCAAGCT 58.779 42.857 0.00 0.00 29.56 3.74
773 774 2.224079 TGAACGCAACAGATTCAAGCTC 59.776 45.455 0.00 0.00 29.56 4.09
774 775 1.882912 ACGCAACAGATTCAAGCTCA 58.117 45.000 0.00 0.00 0.00 4.26
775 776 2.221169 ACGCAACAGATTCAAGCTCAA 58.779 42.857 0.00 0.00 0.00 3.02
776 777 2.618241 ACGCAACAGATTCAAGCTCAAA 59.382 40.909 0.00 0.00 0.00 2.69
777 778 3.066621 ACGCAACAGATTCAAGCTCAAAA 59.933 39.130 0.00 0.00 0.00 2.44
778 779 4.232221 CGCAACAGATTCAAGCTCAAAAT 58.768 39.130 0.00 0.00 0.00 1.82
779 780 5.048782 ACGCAACAGATTCAAGCTCAAAATA 60.049 36.000 0.00 0.00 0.00 1.40
780 781 5.510674 CGCAACAGATTCAAGCTCAAAATAG 59.489 40.000 0.00 0.00 0.00 1.73
781 782 6.615088 GCAACAGATTCAAGCTCAAAATAGA 58.385 36.000 0.00 0.00 0.00 1.98
782 783 7.086376 GCAACAGATTCAAGCTCAAAATAGAA 58.914 34.615 0.00 0.00 0.00 2.10
783 784 7.596248 GCAACAGATTCAAGCTCAAAATAGAAA 59.404 33.333 0.00 0.00 0.00 2.52
784 785 9.467258 CAACAGATTCAAGCTCAAAATAGAAAA 57.533 29.630 0.00 0.00 0.00 2.29
831 832 2.886523 TCCAACAACCAAAGCATGAGAG 59.113 45.455 0.00 0.00 0.00 3.20
833 834 1.251251 ACAACCAAAGCATGAGAGCC 58.749 50.000 0.00 0.00 34.23 4.70
835 836 0.962356 AACCAAAGCATGAGAGCCCG 60.962 55.000 0.00 0.00 34.23 6.13
836 837 2.768492 CCAAAGCATGAGAGCCCGC 61.768 63.158 0.00 0.00 34.23 6.13
842 843 1.517361 CATGAGAGCCCGCAGTACA 59.483 57.895 0.00 0.00 0.00 2.90
849 850 1.078708 GCCCGCAGTACAAGCCTTA 60.079 57.895 0.00 0.00 0.00 2.69
853 854 2.161609 CCCGCAGTACAAGCCTTAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
865 866 2.525368 CCTTAAAAGGTGGGTTCCTGG 58.475 52.381 0.24 0.00 41.41 4.45
879 880 0.474854 TCCTGGCCTGGGTCAAACTA 60.475 55.000 26.94 3.57 0.00 2.24
890 891 3.054287 TGGGTCAAACTAATGGGCGATTA 60.054 43.478 1.91 1.91 0.00 1.75
892 893 4.023193 GGGTCAAACTAATGGGCGATTATG 60.023 45.833 2.29 0.00 0.00 1.90
912 913 1.746322 TAACGTGGCGAACTGACCCA 61.746 55.000 0.00 0.00 0.00 4.51
913 914 2.047274 CGTGGCGAACTGACCCAT 60.047 61.111 0.00 0.00 0.00 4.00
914 915 2.100631 CGTGGCGAACTGACCCATC 61.101 63.158 0.00 0.00 0.00 3.51
915 916 1.003839 GTGGCGAACTGACCCATCA 60.004 57.895 0.00 0.00 0.00 3.07
916 917 1.003839 TGGCGAACTGACCCATCAC 60.004 57.895 0.00 0.00 0.00 3.06
917 918 2.100631 GGCGAACTGACCCATCACG 61.101 63.158 0.00 0.00 0.00 4.35
918 919 1.374252 GCGAACTGACCCATCACGT 60.374 57.895 0.00 0.00 0.00 4.49
919 920 1.352156 GCGAACTGACCCATCACGTC 61.352 60.000 0.00 0.00 0.00 4.34
920 921 0.243907 CGAACTGACCCATCACGTCT 59.756 55.000 0.00 0.00 0.00 4.18
921 922 1.732732 CGAACTGACCCATCACGTCTC 60.733 57.143 0.00 0.00 0.00 3.36
922 923 0.608640 AACTGACCCATCACGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
923 924 1.139734 CTGACCCATCACGTCTCCG 59.860 63.158 0.00 0.00 40.83 4.63
924 925 2.284798 CTGACCCATCACGTCTCCGG 62.285 65.000 0.00 0.00 38.78 5.14
925 926 3.718210 GACCCATCACGTCTCCGGC 62.718 68.421 0.00 0.00 38.78 6.13
926 927 3.461773 CCCATCACGTCTCCGGCT 61.462 66.667 0.00 0.00 38.78 5.52
927 928 2.105128 CCATCACGTCTCCGGCTC 59.895 66.667 0.00 0.00 38.78 4.70
928 929 2.105128 CATCACGTCTCCGGCTCC 59.895 66.667 0.00 0.00 38.78 4.70
929 930 2.362503 ATCACGTCTCCGGCTCCA 60.363 61.111 0.00 0.00 38.78 3.86
930 931 1.982395 ATCACGTCTCCGGCTCCAA 60.982 57.895 0.00 0.00 38.78 3.53
931 932 2.227089 ATCACGTCTCCGGCTCCAAC 62.227 60.000 0.00 0.00 38.78 3.77
932 933 2.600769 ACGTCTCCGGCTCCAACT 60.601 61.111 0.00 0.00 38.78 3.16
933 934 1.303888 ACGTCTCCGGCTCCAACTA 60.304 57.895 0.00 0.00 38.78 2.24
934 935 1.139095 CGTCTCCGGCTCCAACTAC 59.861 63.158 0.00 0.00 0.00 2.73
935 936 1.516423 GTCTCCGGCTCCAACTACC 59.484 63.158 0.00 0.00 0.00 3.18
936 937 2.050350 TCTCCGGCTCCAACTACCG 61.050 63.158 0.00 0.00 46.50 4.02
937 938 3.718210 CTCCGGCTCCAACTACCGC 62.718 68.421 0.00 0.00 45.58 5.68
938 939 3.771160 CCGGCTCCAACTACCGCT 61.771 66.667 0.00 0.00 45.58 5.52
939 940 2.202756 CGGCTCCAACTACCGCTC 60.203 66.667 0.00 0.00 40.55 5.03
940 941 2.202756 GGCTCCAACTACCGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
941 942 2.707849 GGCTCCAACTACCGCTCGA 61.708 63.158 0.00 0.00 0.00 4.04
942 943 1.214589 GCTCCAACTACCGCTCGAA 59.785 57.895 0.00 0.00 0.00 3.71
943 944 0.802607 GCTCCAACTACCGCTCGAAG 60.803 60.000 0.00 0.00 0.00 3.79
944 945 0.526662 CTCCAACTACCGCTCGAAGT 59.473 55.000 0.00 0.00 0.00 3.01
945 946 0.963962 TCCAACTACCGCTCGAAGTT 59.036 50.000 0.00 0.00 33.82 2.66
946 947 1.068474 CCAACTACCGCTCGAAGTTG 58.932 55.000 16.53 16.53 46.18 3.16
956 957 1.634702 CTCGAAGTTGTAGGCTGCTC 58.365 55.000 3.77 0.00 0.00 4.26
960 961 2.744202 CGAAGTTGTAGGCTGCTCAAAT 59.256 45.455 3.77 0.49 0.00 2.32
965 988 6.259550 AGTTGTAGGCTGCTCAAATAAAAG 57.740 37.500 3.77 0.00 0.00 2.27
968 991 3.582714 AGGCTGCTCAAATAAAAGTGC 57.417 42.857 0.00 0.00 0.00 4.40
1167 1190 4.767255 CTGCCCTGGCTCGTCACC 62.767 72.222 9.97 0.00 42.51 4.02
1219 1245 2.833582 GATGCGTCCTCTCGGGGA 60.834 66.667 0.00 0.00 35.33 4.81
1346 1378 2.864885 AGTCTCCATGACCCTCTCAT 57.135 50.000 0.00 0.00 46.46 2.90
1351 1383 1.133041 TCCATGACCCTCTCATCGGAT 60.133 52.381 0.00 0.00 37.53 4.18
1384 1416 1.364171 CCTCTACTCCCGCAATCCG 59.636 63.158 0.00 0.00 0.00 4.18
1506 1565 2.515398 CCCACAGCCAGGTTCACA 59.485 61.111 0.00 0.00 0.00 3.58
1585 1644 3.121944 GCATAAGTATGAGCATCGGTTCG 59.878 47.826 2.42 0.00 38.61 3.95
1598 1657 2.214920 GGTTCGGGACCTGGTCACT 61.215 63.158 25.56 0.00 45.55 3.41
1605 1664 0.038159 GGACCTGGTCACTTCGTCAG 60.038 60.000 26.94 0.00 33.68 3.51
1702 1767 2.230992 GCCACACCAAACTGCAATATCA 59.769 45.455 0.00 0.00 0.00 2.15
1705 1770 3.507233 CACACCAAACTGCAATATCACCT 59.493 43.478 0.00 0.00 0.00 4.00
1837 1914 6.320434 TGTCAATCAACACCTGGGAATATA 57.680 37.500 0.00 0.00 0.00 0.86
1850 1927 7.316393 CCTGGGAATATAACAGGTATCTCAA 57.684 40.000 10.56 0.00 45.21 3.02
1888 1965 3.561725 CCTTCTCAAAGTCAAGGTGTCAC 59.438 47.826 0.00 0.00 33.24 3.67
1908 1985 4.020617 CAGGCACTCGAGGGGCAA 62.021 66.667 38.61 0.00 34.60 4.52
1926 2003 3.932710 GGCAACTATTGTCAGAATCGTCA 59.067 43.478 0.00 0.00 34.79 4.35
1997 2074 1.082117 CGCGTGCTTTTCCTCGGTAT 61.082 55.000 0.00 0.00 0.00 2.73
2064 2141 1.005394 CGGGTGTGCCTACTTCGTT 60.005 57.895 0.00 0.00 34.45 3.85
2218 3717 1.006758 AGTCCGTCAATACTCCTCCCA 59.993 52.381 0.00 0.00 0.00 4.37
2282 3906 8.833231 TCTAAAGCCGGATTTCTCTTATAATG 57.167 34.615 23.00 0.92 0.00 1.90
2331 3955 5.073554 TGATCTAATGGTGGCATCAACCTAT 59.926 40.000 3.70 0.00 0.00 2.57
2384 4008 6.749118 CACTGCATAAGCCTTCTCAAAATTAC 59.251 38.462 0.00 0.00 41.13 1.89
2501 4129 0.038166 GAAATCAGTGAGGGGCCACA 59.962 55.000 8.31 1.50 39.42 4.17
2504 4132 0.622738 ATCAGTGAGGGGCCACAGAT 60.623 55.000 8.31 0.00 38.10 2.90
2506 4134 2.439156 GTGAGGGGCCACAGATGC 60.439 66.667 8.31 0.00 37.04 3.91
2507 4135 2.934932 TGAGGGGCCACAGATGCA 60.935 61.111 8.31 0.00 0.00 3.96
2508 4136 2.124403 GAGGGGCCACAGATGCAG 60.124 66.667 8.31 0.00 0.00 4.41
2509 4137 4.437587 AGGGGCCACAGATGCAGC 62.438 66.667 8.31 0.00 0.00 5.25
2510 4138 4.746309 GGGGCCACAGATGCAGCA 62.746 66.667 4.39 0.00 0.00 4.41
2511 4139 2.677524 GGGCCACAGATGCAGCAA 60.678 61.111 4.39 0.00 0.00 3.91
2512 4140 2.570181 GGCCACAGATGCAGCAAC 59.430 61.111 4.07 0.00 0.00 4.17
2513 4141 2.270257 GGCCACAGATGCAGCAACA 61.270 57.895 4.07 0.00 0.00 3.33
2514 4142 1.211969 GCCACAGATGCAGCAACAG 59.788 57.895 4.07 0.00 0.00 3.16
2515 4143 1.211969 CCACAGATGCAGCAACAGC 59.788 57.895 4.07 0.00 0.00 4.40
2638 4302 2.800544 GTGAACAGCACACAACTACGAT 59.199 45.455 0.00 0.00 46.91 3.73
2796 4460 3.843422 TGAACTGGTTTTGGATGGATGT 58.157 40.909 0.00 0.00 0.00 3.06
2797 4461 4.222336 TGAACTGGTTTTGGATGGATGTT 58.778 39.130 0.00 0.00 0.00 2.71
2810 4474 4.636206 GGATGGATGTTGTCTCAAGGTTAC 59.364 45.833 0.00 0.00 0.00 2.50
2843 4507 0.602638 GATCAGCCACCACAACGTCA 60.603 55.000 0.00 0.00 0.00 4.35
2846 4510 2.899838 GCCACCACAACGTCAGCA 60.900 61.111 0.00 0.00 0.00 4.41
2848 4512 0.953471 GCCACCACAACGTCAGCATA 60.953 55.000 0.00 0.00 0.00 3.14
2869 4533 7.746929 GCATAAGCGCAGATAGATCTAAAAAT 58.253 34.615 11.47 0.00 34.85 1.82
2870 4534 8.873830 GCATAAGCGCAGATAGATCTAAAAATA 58.126 33.333 11.47 0.00 34.85 1.40
2942 4609 0.107263 TTGTCTGTGTTGCTGCTCCA 60.107 50.000 0.00 0.00 0.00 3.86
3131 4843 5.846645 GCAAGAACGGATTTGCTAATTTTG 58.153 37.500 11.27 0.00 44.70 2.44
3142 4854 8.938906 GGATTTGCTAATTTTGATGTGAATGTT 58.061 29.630 0.00 0.00 0.00 2.71
3178 4898 5.510861 GCATATCTAACCCTGAACCGTATGT 60.511 44.000 0.00 0.00 0.00 2.29
3247 4970 2.281484 AATGTGCTGTCGCCCGTT 60.281 55.556 0.00 0.00 34.43 4.44
3377 5102 0.999712 TTCCCCAATCCTTCTCCACC 59.000 55.000 0.00 0.00 0.00 4.61
3498 5226 2.888834 AAAAATGGAACGCTGTTGCT 57.111 40.000 12.36 0.00 36.97 3.91
3516 5244 1.004927 GCTTATCTTGTACTTGCGGCG 60.005 52.381 0.51 0.51 0.00 6.46
3613 5341 1.075542 GCACACACGCTGCTAATGTA 58.924 50.000 0.00 0.00 0.00 2.29
3621 5349 2.165030 ACGCTGCTAATGTAAGTACCGT 59.835 45.455 0.00 0.00 0.00 4.83
3646 5374 2.101185 CGTGCGGTGTTTTGTGCA 59.899 55.556 0.00 0.00 34.44 4.57
3743 5471 9.434559 GATAAATTACAAGGAGCGTATGAAAAC 57.565 33.333 0.00 0.00 0.00 2.43
3751 5479 5.063880 AGGAGCGTATGAAAACTTGACTTT 58.936 37.500 0.00 0.00 0.00 2.66
3858 5586 3.137533 GAGGCTGCATCCATCTAAGAAC 58.862 50.000 9.69 0.00 0.00 3.01
3859 5587 2.507058 AGGCTGCATCCATCTAAGAACA 59.493 45.455 9.69 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.296056 CGGTCTTTAGTGCCGGTTGG 61.296 60.000 1.90 0.00 41.60 3.77
2 3 1.908066 GCGGTCTTTAGTGCCGGTTG 61.908 60.000 1.90 0.00 45.02 3.77
3 4 1.670083 GCGGTCTTTAGTGCCGGTT 60.670 57.895 1.90 0.00 45.02 4.44
5 6 2.818274 GGCGGTCTTTAGTGCCGG 60.818 66.667 0.00 0.00 45.02 6.13
8 9 0.947180 TTCGTGGCGGTCTTTAGTGC 60.947 55.000 0.00 0.00 0.00 4.40
9 10 0.788391 GTTCGTGGCGGTCTTTAGTG 59.212 55.000 0.00 0.00 0.00 2.74
10 11 0.320160 GGTTCGTGGCGGTCTTTAGT 60.320 55.000 0.00 0.00 0.00 2.24
11 12 1.349259 CGGTTCGTGGCGGTCTTTAG 61.349 60.000 0.00 0.00 0.00 1.85
12 13 1.373246 CGGTTCGTGGCGGTCTTTA 60.373 57.895 0.00 0.00 0.00 1.85
13 14 2.663852 CGGTTCGTGGCGGTCTTT 60.664 61.111 0.00 0.00 0.00 2.52
14 15 4.675029 CCGGTTCGTGGCGGTCTT 62.675 66.667 0.00 0.00 0.00 3.01
21 22 0.236449 GTTTTAGTGCCGGTTCGTGG 59.764 55.000 1.90 0.00 0.00 4.94
22 23 0.236449 GGTTTTAGTGCCGGTTCGTG 59.764 55.000 1.90 0.00 0.00 4.35
23 24 0.886043 GGGTTTTAGTGCCGGTTCGT 60.886 55.000 1.90 0.00 0.00 3.85
24 25 1.871077 GGGTTTTAGTGCCGGTTCG 59.129 57.895 1.90 0.00 0.00 3.95
25 26 1.579964 CCGGGTTTTAGTGCCGGTTC 61.580 60.000 1.90 0.00 38.96 3.62
26 27 1.601477 CCGGGTTTTAGTGCCGGTT 60.601 57.895 1.90 0.00 38.96 4.44
27 28 2.032987 CCGGGTTTTAGTGCCGGT 59.967 61.111 1.90 0.00 38.96 5.28
29 30 0.604511 AGAACCGGGTTTTAGTGCCG 60.605 55.000 14.69 0.00 0.00 5.69
30 31 0.879090 CAGAACCGGGTTTTAGTGCC 59.121 55.000 14.69 0.00 0.00 5.01
31 32 0.240145 GCAGAACCGGGTTTTAGTGC 59.760 55.000 14.69 15.85 0.00 4.40
32 33 1.265905 GTGCAGAACCGGGTTTTAGTG 59.734 52.381 14.69 10.39 0.00 2.74
33 34 1.142262 AGTGCAGAACCGGGTTTTAGT 59.858 47.619 14.69 1.51 0.00 2.24
34 35 1.892209 AGTGCAGAACCGGGTTTTAG 58.108 50.000 14.69 8.20 0.00 1.85
35 36 2.369532 ACTAGTGCAGAACCGGGTTTTA 59.630 45.455 14.69 0.00 0.00 1.52
36 37 1.142262 ACTAGTGCAGAACCGGGTTTT 59.858 47.619 14.69 5.34 0.00 2.43
37 38 0.763035 ACTAGTGCAGAACCGGGTTT 59.237 50.000 14.69 0.00 0.00 3.27
38 39 0.034896 CACTAGTGCAGAACCGGGTT 59.965 55.000 13.26 13.26 0.00 4.11
39 40 1.119574 ACACTAGTGCAGAACCGGGT 61.120 55.000 22.90 0.00 0.00 5.28
40 41 0.389948 GACACTAGTGCAGAACCGGG 60.390 60.000 22.90 0.00 0.00 5.73
41 42 0.317160 TGACACTAGTGCAGAACCGG 59.683 55.000 22.90 0.00 0.00 5.28
42 43 1.419374 GTGACACTAGTGCAGAACCG 58.581 55.000 22.90 0.00 0.00 4.44
43 44 1.070134 TGGTGACACTAGTGCAGAACC 59.930 52.381 22.90 21.92 33.40 3.62
44 45 2.408050 CTGGTGACACTAGTGCAGAAC 58.592 52.381 22.90 14.53 35.60 3.01
45 46 1.344438 CCTGGTGACACTAGTGCAGAA 59.656 52.381 22.90 10.96 35.60 3.02
46 47 0.969149 CCTGGTGACACTAGTGCAGA 59.031 55.000 22.90 9.88 35.60 4.26
47 48 0.036952 CCCTGGTGACACTAGTGCAG 60.037 60.000 22.90 19.33 35.60 4.41
48 49 1.480212 CCCCTGGTGACACTAGTGCA 61.480 60.000 22.90 17.67 35.60 4.57
49 50 1.296715 CCCCTGGTGACACTAGTGC 59.703 63.158 22.90 15.35 35.60 4.40
50 51 1.296715 GCCCCTGGTGACACTAGTG 59.703 63.158 21.44 21.44 35.60 2.74
51 52 2.283529 CGCCCCTGGTGACACTAGT 61.284 63.158 16.73 0.00 34.74 2.57
52 53 1.330655 ATCGCCCCTGGTGACACTAG 61.331 60.000 11.80 11.80 45.43 2.57
53 54 0.032912 TATCGCCCCTGGTGACACTA 60.033 55.000 5.39 0.00 45.43 2.74
54 55 0.691078 ATATCGCCCCTGGTGACACT 60.691 55.000 5.39 0.00 45.43 3.55
55 56 0.180406 AATATCGCCCCTGGTGACAC 59.820 55.000 0.00 0.00 45.43 3.67
56 57 0.180171 CAATATCGCCCCTGGTGACA 59.820 55.000 0.00 0.00 45.43 3.58
57 58 1.166531 GCAATATCGCCCCTGGTGAC 61.167 60.000 0.00 0.00 45.43 3.67
223 224 1.222115 GGGATGAAGATACCGCACGC 61.222 60.000 0.00 0.00 0.00 5.34
256 257 0.038599 TACTGTCCTGACCTGCGGTA 59.961 55.000 0.09 0.00 35.25 4.02
304 305 4.441634 CCTTATCACCCTTCTTCCGTACAG 60.442 50.000 0.00 0.00 0.00 2.74
309 310 3.629142 AACCTTATCACCCTTCTTCCG 57.371 47.619 0.00 0.00 0.00 4.30
312 313 5.711698 TCCAAAAACCTTATCACCCTTCTT 58.288 37.500 0.00 0.00 0.00 2.52
354 355 1.325640 CGTCCGTGATGAAGCAATCAG 59.674 52.381 0.00 0.00 42.53 2.90
357 358 1.359848 GTCGTCCGTGATGAAGCAAT 58.640 50.000 0.00 0.00 28.80 3.56
379 380 0.169894 GGAAGTAGTCGTCGGTGTCC 59.830 60.000 0.00 0.00 0.00 4.02
380 381 0.169894 GGGAAGTAGTCGTCGGTGTC 59.830 60.000 0.00 0.00 0.00 3.67
381 382 1.246737 GGGGAAGTAGTCGTCGGTGT 61.247 60.000 0.00 0.00 0.00 4.16
382 383 1.246056 TGGGGAAGTAGTCGTCGGTG 61.246 60.000 0.00 0.00 0.00 4.94
383 384 0.540365 TTGGGGAAGTAGTCGTCGGT 60.540 55.000 0.00 0.00 0.00 4.69
384 385 0.108945 GTTGGGGAAGTAGTCGTCGG 60.109 60.000 0.00 0.00 0.00 4.79
385 386 0.455633 CGTTGGGGAAGTAGTCGTCG 60.456 60.000 0.00 0.00 0.00 5.12
386 387 0.883833 TCGTTGGGGAAGTAGTCGTC 59.116 55.000 0.00 0.00 0.00 4.20
387 388 1.203994 CATCGTTGGGGAAGTAGTCGT 59.796 52.381 0.00 0.00 0.00 4.34
388 389 1.475280 TCATCGTTGGGGAAGTAGTCG 59.525 52.381 0.00 0.00 0.00 4.18
389 390 2.496470 AGTCATCGTTGGGGAAGTAGTC 59.504 50.000 0.00 0.00 0.00 2.59
390 391 2.537143 AGTCATCGTTGGGGAAGTAGT 58.463 47.619 0.00 0.00 0.00 2.73
391 392 3.195825 AGAAGTCATCGTTGGGGAAGTAG 59.804 47.826 0.00 0.00 0.00 2.57
392 393 3.170717 AGAAGTCATCGTTGGGGAAGTA 58.829 45.455 0.00 0.00 0.00 2.24
393 394 1.978580 AGAAGTCATCGTTGGGGAAGT 59.021 47.619 0.00 0.00 0.00 3.01
394 395 2.770164 AGAAGTCATCGTTGGGGAAG 57.230 50.000 0.00 0.00 0.00 3.46
395 396 2.290071 GGAAGAAGTCATCGTTGGGGAA 60.290 50.000 0.00 0.00 0.00 3.97
396 397 1.278127 GGAAGAAGTCATCGTTGGGGA 59.722 52.381 0.00 0.00 0.00 4.81
397 398 1.679032 GGGAAGAAGTCATCGTTGGGG 60.679 57.143 0.00 0.00 0.00 4.96
398 399 1.679032 GGGGAAGAAGTCATCGTTGGG 60.679 57.143 0.00 0.00 0.00 4.12
399 400 1.739067 GGGGAAGAAGTCATCGTTGG 58.261 55.000 0.00 0.00 0.00 3.77
400 401 1.359848 CGGGGAAGAAGTCATCGTTG 58.640 55.000 0.00 0.00 0.00 4.10
401 402 0.249398 CCGGGGAAGAAGTCATCGTT 59.751 55.000 0.00 0.00 0.00 3.85
402 403 1.898154 CCGGGGAAGAAGTCATCGT 59.102 57.895 0.00 0.00 0.00 3.73
403 404 1.521681 GCCGGGGAAGAAGTCATCG 60.522 63.158 2.18 0.00 0.00 3.84
404 405 1.521681 CGCCGGGGAAGAAGTCATC 60.522 63.158 14.46 0.00 0.00 2.92
405 406 2.240162 GACGCCGGGGAAGAAGTCAT 62.240 60.000 27.23 0.00 0.00 3.06
406 407 2.920912 ACGCCGGGGAAGAAGTCA 60.921 61.111 27.23 0.00 0.00 3.41
407 408 2.125633 GACGCCGGGGAAGAAGTC 60.126 66.667 27.23 7.19 0.00 3.01
408 409 4.065281 CGACGCCGGGGAAGAAGT 62.065 66.667 27.23 0.00 0.00 3.01
409 410 3.755628 TCGACGCCGGGGAAGAAG 61.756 66.667 27.23 10.84 36.24 2.85
410 411 4.060038 GTCGACGCCGGGGAAGAA 62.060 66.667 27.23 4.52 36.24 2.52
412 413 4.367023 TTGTCGACGCCGGGGAAG 62.367 66.667 27.23 17.62 36.24 3.46
413 414 4.668118 GTTGTCGACGCCGGGGAA 62.668 66.667 27.23 5.40 36.24 3.97
417 418 3.569049 AAGAGGTTGTCGACGCCGG 62.569 63.158 19.03 0.00 36.24 6.13
418 419 2.049433 AAGAGGTTGTCGACGCCG 60.049 61.111 19.03 0.00 37.07 6.46
419 420 2.087009 CGAAGAGGTTGTCGACGCC 61.087 63.158 17.95 17.95 39.64 5.68
420 421 1.081641 TCGAAGAGGTTGTCGACGC 60.082 57.895 11.62 6.23 41.13 5.19
423 424 1.406180 TGTTGTCGAAGAGGTTGTCGA 59.594 47.619 0.00 0.00 43.61 4.20
424 425 1.847818 TGTTGTCGAAGAGGTTGTCG 58.152 50.000 0.00 0.00 36.95 4.35
425 426 3.184581 GTCATGTTGTCGAAGAGGTTGTC 59.815 47.826 0.00 0.00 36.95 3.18
426 427 3.131396 GTCATGTTGTCGAAGAGGTTGT 58.869 45.455 0.00 0.00 36.95 3.32
427 428 3.393800 AGTCATGTTGTCGAAGAGGTTG 58.606 45.455 0.00 0.00 36.95 3.77
428 429 3.753294 AGTCATGTTGTCGAAGAGGTT 57.247 42.857 0.00 0.00 36.95 3.50
429 430 4.866508 TTAGTCATGTTGTCGAAGAGGT 57.133 40.909 0.00 0.00 36.95 3.85
430 431 5.470368 TCTTTAGTCATGTTGTCGAAGAGG 58.530 41.667 0.00 0.00 36.95 3.69
431 432 5.574830 CCTCTTTAGTCATGTTGTCGAAGAG 59.425 44.000 13.91 13.91 36.95 2.85
432 433 5.243060 TCCTCTTTAGTCATGTTGTCGAAGA 59.757 40.000 0.00 0.00 0.00 2.87
433 434 5.346281 GTCCTCTTTAGTCATGTTGTCGAAG 59.654 44.000 0.00 0.00 0.00 3.79
434 435 5.221362 TGTCCTCTTTAGTCATGTTGTCGAA 60.221 40.000 0.00 0.00 0.00 3.71
435 436 4.279922 TGTCCTCTTTAGTCATGTTGTCGA 59.720 41.667 0.00 0.00 0.00 4.20
436 437 4.386049 GTGTCCTCTTTAGTCATGTTGTCG 59.614 45.833 0.00 0.00 0.00 4.35
437 438 4.691216 GGTGTCCTCTTTAGTCATGTTGTC 59.309 45.833 0.00 0.00 0.00 3.18
438 439 4.102524 TGGTGTCCTCTTTAGTCATGTTGT 59.897 41.667 0.00 0.00 0.00 3.32
439 440 4.641396 TGGTGTCCTCTTTAGTCATGTTG 58.359 43.478 0.00 0.00 0.00 3.33
440 441 4.974645 TGGTGTCCTCTTTAGTCATGTT 57.025 40.909 0.00 0.00 0.00 2.71
441 442 4.348168 AGTTGGTGTCCTCTTTAGTCATGT 59.652 41.667 0.00 0.00 0.00 3.21
442 443 4.899502 AGTTGGTGTCCTCTTTAGTCATG 58.100 43.478 0.00 0.00 0.00 3.07
443 444 4.020128 GGAGTTGGTGTCCTCTTTAGTCAT 60.020 45.833 0.00 0.00 0.00 3.06
444 445 3.323979 GGAGTTGGTGTCCTCTTTAGTCA 59.676 47.826 0.00 0.00 0.00 3.41
445 446 3.323979 TGGAGTTGGTGTCCTCTTTAGTC 59.676 47.826 0.00 0.00 34.86 2.59
446 447 3.314693 TGGAGTTGGTGTCCTCTTTAGT 58.685 45.455 0.00 0.00 34.86 2.24
447 448 4.040461 TCTTGGAGTTGGTGTCCTCTTTAG 59.960 45.833 0.00 0.00 34.86 1.85
448 449 3.971305 TCTTGGAGTTGGTGTCCTCTTTA 59.029 43.478 0.00 0.00 34.86 1.85
449 450 2.777692 TCTTGGAGTTGGTGTCCTCTTT 59.222 45.455 0.00 0.00 34.86 2.52
450 451 2.104963 GTCTTGGAGTTGGTGTCCTCTT 59.895 50.000 0.00 0.00 34.86 2.85
451 452 1.694696 GTCTTGGAGTTGGTGTCCTCT 59.305 52.381 0.00 0.00 34.86 3.69
452 453 1.270893 GGTCTTGGAGTTGGTGTCCTC 60.271 57.143 0.00 0.00 34.86 3.71
453 454 0.765510 GGTCTTGGAGTTGGTGTCCT 59.234 55.000 0.00 0.00 34.86 3.85
454 455 0.602905 CGGTCTTGGAGTTGGTGTCC 60.603 60.000 0.00 0.00 34.31 4.02
455 456 0.602905 CCGGTCTTGGAGTTGGTGTC 60.603 60.000 0.00 0.00 0.00 3.67
456 457 1.342672 ACCGGTCTTGGAGTTGGTGT 61.343 55.000 0.00 0.00 0.00 4.16
457 458 0.682852 TACCGGTCTTGGAGTTGGTG 59.317 55.000 12.40 0.00 0.00 4.17
458 459 0.683412 GTACCGGTCTTGGAGTTGGT 59.317 55.000 12.40 0.00 0.00 3.67
459 460 0.974383 AGTACCGGTCTTGGAGTTGG 59.026 55.000 12.40 0.00 0.00 3.77
460 461 2.299297 AGAAGTACCGGTCTTGGAGTTG 59.701 50.000 12.40 0.00 0.00 3.16
461 462 2.299297 CAGAAGTACCGGTCTTGGAGTT 59.701 50.000 12.40 1.17 0.00 3.01
462 463 1.893801 CAGAAGTACCGGTCTTGGAGT 59.106 52.381 12.40 0.00 0.00 3.85
463 464 1.404315 GCAGAAGTACCGGTCTTGGAG 60.404 57.143 12.40 7.67 0.00 3.86
464 465 0.606604 GCAGAAGTACCGGTCTTGGA 59.393 55.000 12.40 0.00 0.00 3.53
465 466 0.391263 GGCAGAAGTACCGGTCTTGG 60.391 60.000 12.40 9.99 0.00 3.61
466 467 0.736325 CGGCAGAAGTACCGGTCTTG 60.736 60.000 12.40 5.90 45.74 3.02
467 468 1.590147 CGGCAGAAGTACCGGTCTT 59.410 57.895 12.40 14.89 45.74 3.01
468 469 3.285371 CGGCAGAAGTACCGGTCT 58.715 61.111 12.40 5.40 45.74 3.85
473 474 1.019805 GGAGCAACGGCAGAAGTACC 61.020 60.000 0.00 0.00 44.61 3.34
474 475 1.352156 CGGAGCAACGGCAGAAGTAC 61.352 60.000 0.00 0.00 44.61 2.73
475 476 1.080093 CGGAGCAACGGCAGAAGTA 60.080 57.895 0.00 0.00 44.61 2.24
476 477 1.812686 TACGGAGCAACGGCAGAAGT 61.813 55.000 5.09 0.00 44.61 3.01
477 478 1.080093 TACGGAGCAACGGCAGAAG 60.080 57.895 5.09 0.00 44.61 2.85
478 479 1.373748 GTACGGAGCAACGGCAGAA 60.374 57.895 5.09 0.00 44.61 3.02
479 480 2.260434 GTACGGAGCAACGGCAGA 59.740 61.111 5.09 0.00 44.61 4.26
480 481 3.179265 CGTACGGAGCAACGGCAG 61.179 66.667 7.57 0.00 44.61 4.85
481 482 3.902162 GACGTACGGAGCAACGGCA 62.902 63.158 21.06 0.00 45.81 5.69
482 483 3.177249 GACGTACGGAGCAACGGC 61.177 66.667 21.06 0.00 43.16 5.68
483 484 1.069378 GAAGACGTACGGAGCAACGG 61.069 60.000 21.06 0.00 43.16 4.44
484 485 1.393597 CGAAGACGTACGGAGCAACG 61.394 60.000 21.06 12.83 44.19 4.10
485 486 2.346884 CGAAGACGTACGGAGCAAC 58.653 57.895 21.06 4.95 34.56 4.17
486 487 4.853507 CGAAGACGTACGGAGCAA 57.146 55.556 21.06 0.00 34.56 3.91
495 496 9.283134 TCTTAAAAAGAGAGGTCACGAAGACGT 62.283 40.741 7.47 7.47 42.15 4.34
496 497 7.005188 TCTTAAAAAGAGAGGTCACGAAGACG 61.005 42.308 0.00 0.00 39.37 4.18
497 498 6.214399 TCTTAAAAAGAGAGGTCACGAAGAC 58.786 40.000 0.00 0.00 38.53 3.01
498 499 6.401047 TCTTAAAAAGAGAGGTCACGAAGA 57.599 37.500 0.00 0.00 32.71 2.87
499 500 6.868864 TGATCTTAAAAAGAGAGGTCACGAAG 59.131 38.462 0.00 0.00 41.61 3.79
500 501 6.755206 TGATCTTAAAAAGAGAGGTCACGAA 58.245 36.000 0.00 0.00 41.61 3.85
501 502 6.340962 TGATCTTAAAAAGAGAGGTCACGA 57.659 37.500 0.00 0.00 41.61 4.35
502 503 6.456181 GCATGATCTTAAAAAGAGAGGTCACG 60.456 42.308 0.00 0.00 41.61 4.35
503 504 6.597280 AGCATGATCTTAAAAAGAGAGGTCAC 59.403 38.462 0.00 0.00 41.61 3.67
504 505 6.715280 AGCATGATCTTAAAAAGAGAGGTCA 58.285 36.000 0.00 0.00 41.61 4.02
505 506 7.766278 TGTAGCATGATCTTAAAAAGAGAGGTC 59.234 37.037 0.00 0.00 41.61 3.85
506 507 7.624549 TGTAGCATGATCTTAAAAAGAGAGGT 58.375 34.615 0.00 0.00 41.61 3.85
507 508 7.768120 ACTGTAGCATGATCTTAAAAAGAGAGG 59.232 37.037 0.00 0.00 41.61 3.69
508 509 8.715191 ACTGTAGCATGATCTTAAAAAGAGAG 57.285 34.615 0.00 0.00 41.61 3.20
509 510 9.507329 AAACTGTAGCATGATCTTAAAAAGAGA 57.493 29.630 0.00 0.00 41.61 3.10
514 515 9.787532 GCAATAAACTGTAGCATGATCTTAAAA 57.212 29.630 0.00 0.00 0.00 1.52
515 516 9.177608 AGCAATAAACTGTAGCATGATCTTAAA 57.822 29.630 0.00 0.00 0.00 1.52
516 517 8.737168 AGCAATAAACTGTAGCATGATCTTAA 57.263 30.769 0.00 0.00 0.00 1.85
517 518 8.206867 AGAGCAATAAACTGTAGCATGATCTTA 58.793 33.333 0.00 0.00 28.64 2.10
518 519 7.052873 AGAGCAATAAACTGTAGCATGATCTT 58.947 34.615 0.00 0.00 28.64 2.40
519 520 6.590068 AGAGCAATAAACTGTAGCATGATCT 58.410 36.000 0.00 0.00 0.00 2.75
520 521 6.857777 AGAGCAATAAACTGTAGCATGATC 57.142 37.500 0.00 0.00 0.00 2.92
521 522 7.504403 ACTAGAGCAATAAACTGTAGCATGAT 58.496 34.615 0.00 0.00 35.07 2.45
522 523 6.878317 ACTAGAGCAATAAACTGTAGCATGA 58.122 36.000 0.00 0.00 35.07 3.07
523 524 7.545362 AACTAGAGCAATAAACTGTAGCATG 57.455 36.000 0.00 0.00 35.07 4.06
524 525 8.567285 AAAACTAGAGCAATAAACTGTAGCAT 57.433 30.769 0.00 0.00 35.07 3.79
525 526 7.979444 AAAACTAGAGCAATAAACTGTAGCA 57.021 32.000 0.00 0.00 35.07 3.49
526 527 8.722394 AGAAAAACTAGAGCAATAAACTGTAGC 58.278 33.333 0.00 0.00 35.07 3.58
529 530 8.903820 ACAAGAAAAACTAGAGCAATAAACTGT 58.096 29.630 0.00 0.00 0.00 3.55
530 531 9.736023 AACAAGAAAAACTAGAGCAATAAACTG 57.264 29.630 0.00 0.00 0.00 3.16
531 532 9.952188 GAACAAGAAAAACTAGAGCAATAAACT 57.048 29.630 0.00 0.00 0.00 2.66
532 533 9.952188 AGAACAAGAAAAACTAGAGCAATAAAC 57.048 29.630 0.00 0.00 0.00 2.01
535 536 9.216117 GGTAGAACAAGAAAAACTAGAGCAATA 57.784 33.333 0.00 0.00 0.00 1.90
536 537 7.175119 GGGTAGAACAAGAAAAACTAGAGCAAT 59.825 37.037 0.00 0.00 0.00 3.56
537 538 6.485648 GGGTAGAACAAGAAAAACTAGAGCAA 59.514 38.462 0.00 0.00 0.00 3.91
538 539 5.995897 GGGTAGAACAAGAAAAACTAGAGCA 59.004 40.000 0.00 0.00 0.00 4.26
539 540 6.231951 AGGGTAGAACAAGAAAAACTAGAGC 58.768 40.000 0.00 0.00 0.00 4.09
540 541 7.600752 CAGAGGGTAGAACAAGAAAAACTAGAG 59.399 40.741 0.00 0.00 0.00 2.43
541 542 7.070821 ACAGAGGGTAGAACAAGAAAAACTAGA 59.929 37.037 0.00 0.00 0.00 2.43
542 543 7.217906 ACAGAGGGTAGAACAAGAAAAACTAG 58.782 38.462 0.00 0.00 0.00 2.57
543 544 7.133133 ACAGAGGGTAGAACAAGAAAAACTA 57.867 36.000 0.00 0.00 0.00 2.24
544 545 6.002653 ACAGAGGGTAGAACAAGAAAAACT 57.997 37.500 0.00 0.00 0.00 2.66
545 546 6.542735 AGAACAGAGGGTAGAACAAGAAAAAC 59.457 38.462 0.00 0.00 0.00 2.43
546 547 6.659824 AGAACAGAGGGTAGAACAAGAAAAA 58.340 36.000 0.00 0.00 0.00 1.94
547 548 6.248569 AGAACAGAGGGTAGAACAAGAAAA 57.751 37.500 0.00 0.00 0.00 2.29
548 549 5.888982 AGAACAGAGGGTAGAACAAGAAA 57.111 39.130 0.00 0.00 0.00 2.52
549 550 5.836898 TGTAGAACAGAGGGTAGAACAAGAA 59.163 40.000 0.00 0.00 0.00 2.52
550 551 5.391256 TGTAGAACAGAGGGTAGAACAAGA 58.609 41.667 0.00 0.00 0.00 3.02
551 552 5.723672 TGTAGAACAGAGGGTAGAACAAG 57.276 43.478 0.00 0.00 0.00 3.16
552 553 5.542635 ACATGTAGAACAGAGGGTAGAACAA 59.457 40.000 0.00 0.00 0.00 2.83
553 554 5.047306 CACATGTAGAACAGAGGGTAGAACA 60.047 44.000 0.00 0.00 0.00 3.18
554 555 5.047235 ACACATGTAGAACAGAGGGTAGAAC 60.047 44.000 0.00 0.00 0.00 3.01
555 556 5.084519 ACACATGTAGAACAGAGGGTAGAA 58.915 41.667 0.00 0.00 0.00 2.10
556 557 4.673968 ACACATGTAGAACAGAGGGTAGA 58.326 43.478 0.00 0.00 0.00 2.59
557 558 5.407407 AACACATGTAGAACAGAGGGTAG 57.593 43.478 0.00 0.00 0.00 3.18
558 559 6.439375 ACATAACACATGTAGAACAGAGGGTA 59.561 38.462 0.00 0.00 0.00 3.69
559 560 5.248477 ACATAACACATGTAGAACAGAGGGT 59.752 40.000 0.00 0.00 0.00 4.34
560 561 5.734720 ACATAACACATGTAGAACAGAGGG 58.265 41.667 0.00 0.00 0.00 4.30
561 562 7.672983 AAACATAACACATGTAGAACAGAGG 57.327 36.000 0.00 0.00 0.00 3.69
563 564 9.772973 ACTAAAACATAACACATGTAGAACAGA 57.227 29.630 0.00 0.00 0.00 3.41
568 569 9.549078 TGTGAACTAAAACATAACACATGTAGA 57.451 29.630 0.00 0.00 33.04 2.59
574 575 9.110502 TGTACATGTGAACTAAAACATAACACA 57.889 29.630 9.11 0.00 40.18 3.72
575 576 9.938670 TTGTACATGTGAACTAAAACATAACAC 57.061 29.630 9.11 0.00 35.28 3.32
579 580 9.619316 GCATTTGTACATGTGAACTAAAACATA 57.381 29.630 9.11 0.00 35.28 2.29
580 581 8.359642 AGCATTTGTACATGTGAACTAAAACAT 58.640 29.630 9.11 0.00 37.50 2.71
581 582 7.711846 AGCATTTGTACATGTGAACTAAAACA 58.288 30.769 9.11 0.00 0.00 2.83
582 583 9.840427 ATAGCATTTGTACATGTGAACTAAAAC 57.160 29.630 9.11 0.00 0.00 2.43
586 587 8.673711 GGAAATAGCATTTGTACATGTGAACTA 58.326 33.333 9.11 1.24 0.00 2.24
587 588 7.362920 GGGAAATAGCATTTGTACATGTGAACT 60.363 37.037 9.11 0.00 0.00 3.01
588 589 6.751888 GGGAAATAGCATTTGTACATGTGAAC 59.248 38.462 9.11 0.00 0.00 3.18
589 590 6.663093 AGGGAAATAGCATTTGTACATGTGAA 59.337 34.615 9.11 0.97 0.00 3.18
590 591 6.186957 AGGGAAATAGCATTTGTACATGTGA 58.813 36.000 9.11 0.00 0.00 3.58
591 592 6.455360 AGGGAAATAGCATTTGTACATGTG 57.545 37.500 9.11 0.00 0.00 3.21
592 593 6.663093 TGAAGGGAAATAGCATTTGTACATGT 59.337 34.615 2.69 2.69 0.00 3.21
593 594 6.974622 GTGAAGGGAAATAGCATTTGTACATG 59.025 38.462 0.00 0.00 0.00 3.21
594 595 6.891908 AGTGAAGGGAAATAGCATTTGTACAT 59.108 34.615 0.00 0.00 0.00 2.29
595 596 6.245408 AGTGAAGGGAAATAGCATTTGTACA 58.755 36.000 0.00 0.00 0.00 2.90
596 597 6.599638 AGAGTGAAGGGAAATAGCATTTGTAC 59.400 38.462 0.00 0.00 0.00 2.90
597 598 6.599244 CAGAGTGAAGGGAAATAGCATTTGTA 59.401 38.462 0.00 0.00 0.00 2.41
598 599 5.416952 CAGAGTGAAGGGAAATAGCATTTGT 59.583 40.000 0.00 0.00 0.00 2.83
599 600 5.678107 GCAGAGTGAAGGGAAATAGCATTTG 60.678 44.000 0.00 0.00 0.00 2.32
600 601 4.400567 GCAGAGTGAAGGGAAATAGCATTT 59.599 41.667 0.00 0.00 0.00 2.32
601 602 3.950395 GCAGAGTGAAGGGAAATAGCATT 59.050 43.478 0.00 0.00 0.00 3.56
602 603 3.201708 AGCAGAGTGAAGGGAAATAGCAT 59.798 43.478 0.00 0.00 0.00 3.79
603 604 2.573462 AGCAGAGTGAAGGGAAATAGCA 59.427 45.455 0.00 0.00 0.00 3.49
604 605 3.274095 AGCAGAGTGAAGGGAAATAGC 57.726 47.619 0.00 0.00 0.00 2.97
605 606 5.362430 AGTCTAGCAGAGTGAAGGGAAATAG 59.638 44.000 0.00 0.00 0.00 1.73
606 607 5.273208 AGTCTAGCAGAGTGAAGGGAAATA 58.727 41.667 0.00 0.00 0.00 1.40
607 608 4.100373 AGTCTAGCAGAGTGAAGGGAAAT 58.900 43.478 0.00 0.00 0.00 2.17
608 609 3.511477 AGTCTAGCAGAGTGAAGGGAAA 58.489 45.455 0.00 0.00 0.00 3.13
609 610 3.176924 AGTCTAGCAGAGTGAAGGGAA 57.823 47.619 0.00 0.00 0.00 3.97
610 611 2.909504 AGTCTAGCAGAGTGAAGGGA 57.090 50.000 0.00 0.00 0.00 4.20
611 612 3.357203 TGTAGTCTAGCAGAGTGAAGGG 58.643 50.000 4.38 0.00 0.00 3.95
612 613 4.642437 TCATGTAGTCTAGCAGAGTGAAGG 59.358 45.833 0.00 0.00 0.00 3.46
613 614 5.356751 AGTCATGTAGTCTAGCAGAGTGAAG 59.643 44.000 0.00 0.00 0.00 3.02
614 615 5.257262 AGTCATGTAGTCTAGCAGAGTGAA 58.743 41.667 0.00 0.00 0.00 3.18
615 616 4.849518 AGTCATGTAGTCTAGCAGAGTGA 58.150 43.478 0.00 0.00 0.00 3.41
616 617 5.105957 ACAAGTCATGTAGTCTAGCAGAGTG 60.106 44.000 0.00 0.00 41.63 3.51
617 618 5.013547 ACAAGTCATGTAGTCTAGCAGAGT 58.986 41.667 0.00 0.00 41.63 3.24
618 619 5.574891 ACAAGTCATGTAGTCTAGCAGAG 57.425 43.478 0.00 0.00 41.63 3.35
619 620 5.984695 AACAAGTCATGTAGTCTAGCAGA 57.015 39.130 0.00 0.00 42.99 4.26
620 621 6.159293 TGAAACAAGTCATGTAGTCTAGCAG 58.841 40.000 0.00 0.00 42.99 4.24
621 622 6.096673 TGAAACAAGTCATGTAGTCTAGCA 57.903 37.500 0.00 0.00 42.99 3.49
622 623 7.038659 AGATGAAACAAGTCATGTAGTCTAGC 58.961 38.462 0.00 0.00 42.99 3.42
623 624 8.465999 AGAGATGAAACAAGTCATGTAGTCTAG 58.534 37.037 0.00 0.00 42.99 2.43
624 625 8.354711 AGAGATGAAACAAGTCATGTAGTCTA 57.645 34.615 0.00 0.00 42.99 2.59
625 626 7.238486 AGAGATGAAACAAGTCATGTAGTCT 57.762 36.000 0.00 0.00 42.99 3.24
626 627 9.593134 AATAGAGATGAAACAAGTCATGTAGTC 57.407 33.333 0.00 0.00 42.99 2.59
705 706 9.325198 ACGAATACAATGTTAGAAATATGAGCA 57.675 29.630 0.00 0.00 0.00 4.26
729 730 8.600625 TTCAATTTCTGAGTTTATATCGGAACG 58.399 33.333 0.00 0.00 45.35 3.95
730 731 9.704098 GTTCAATTTCTGAGTTTATATCGGAAC 57.296 33.333 0.00 0.00 40.80 3.62
731 732 8.600625 CGTTCAATTTCTGAGTTTATATCGGAA 58.399 33.333 0.00 0.00 39.67 4.30
732 733 7.254319 GCGTTCAATTTCTGAGTTTATATCGGA 60.254 37.037 0.00 0.00 34.81 4.55
733 734 6.846283 GCGTTCAATTTCTGAGTTTATATCGG 59.154 38.462 0.00 0.00 34.81 4.18
734 735 7.398746 TGCGTTCAATTTCTGAGTTTATATCG 58.601 34.615 0.00 0.00 34.81 2.92
735 736 9.000018 GTTGCGTTCAATTTCTGAGTTTATATC 58.000 33.333 0.00 0.00 34.81 1.63
736 737 8.511321 TGTTGCGTTCAATTTCTGAGTTTATAT 58.489 29.630 0.00 0.00 34.81 0.86
737 738 7.866729 TGTTGCGTTCAATTTCTGAGTTTATA 58.133 30.769 0.00 0.00 34.81 0.98
738 739 6.734137 TGTTGCGTTCAATTTCTGAGTTTAT 58.266 32.000 0.00 0.00 34.81 1.40
739 740 6.037720 TCTGTTGCGTTCAATTTCTGAGTTTA 59.962 34.615 0.00 0.00 34.81 2.01
740 741 4.992688 TGTTGCGTTCAATTTCTGAGTTT 58.007 34.783 0.00 0.00 34.81 2.66
741 742 4.335315 TCTGTTGCGTTCAATTTCTGAGTT 59.665 37.500 0.00 0.00 34.81 3.01
742 743 3.876914 TCTGTTGCGTTCAATTTCTGAGT 59.123 39.130 0.00 0.00 34.81 3.41
743 744 4.472691 TCTGTTGCGTTCAATTTCTGAG 57.527 40.909 0.00 0.00 34.81 3.35
744 745 5.008514 TGAATCTGTTGCGTTCAATTTCTGA 59.991 36.000 0.00 0.00 34.29 3.27
745 746 5.214417 TGAATCTGTTGCGTTCAATTTCTG 58.786 37.500 0.00 0.00 34.29 3.02
746 747 5.437289 TGAATCTGTTGCGTTCAATTTCT 57.563 34.783 0.00 0.00 34.29 2.52
747 748 5.387752 GCTTGAATCTGTTGCGTTCAATTTC 60.388 40.000 0.00 0.00 40.05 2.17
748 749 4.445385 GCTTGAATCTGTTGCGTTCAATTT 59.555 37.500 0.00 0.00 40.05 1.82
749 750 3.983344 GCTTGAATCTGTTGCGTTCAATT 59.017 39.130 0.00 0.00 40.05 2.32
750 751 3.254166 AGCTTGAATCTGTTGCGTTCAAT 59.746 39.130 0.00 0.00 40.05 2.57
751 752 2.618241 AGCTTGAATCTGTTGCGTTCAA 59.382 40.909 0.00 0.00 38.95 2.69
752 753 2.221169 AGCTTGAATCTGTTGCGTTCA 58.779 42.857 0.00 0.00 0.00 3.18
753 754 2.224079 TGAGCTTGAATCTGTTGCGTTC 59.776 45.455 0.00 0.00 0.00 3.95
754 755 2.221169 TGAGCTTGAATCTGTTGCGTT 58.779 42.857 0.00 0.00 0.00 4.84
755 756 1.882912 TGAGCTTGAATCTGTTGCGT 58.117 45.000 0.00 0.00 0.00 5.24
756 757 2.975410 TTGAGCTTGAATCTGTTGCG 57.025 45.000 0.00 0.00 0.00 4.85
757 758 6.615088 TCTATTTTGAGCTTGAATCTGTTGC 58.385 36.000 0.00 0.00 0.00 4.17
758 759 9.467258 TTTTCTATTTTGAGCTTGAATCTGTTG 57.533 29.630 0.00 0.00 0.00 3.33
806 807 3.450457 TCATGCTTTGGTTGTTGGAGTTT 59.550 39.130 0.00 0.00 0.00 2.66
812 813 2.608752 GGCTCTCATGCTTTGGTTGTTG 60.609 50.000 0.00 0.00 0.00 3.33
831 832 0.675522 TTAAGGCTTGTACTGCGGGC 60.676 55.000 10.69 0.00 0.00 6.13
833 834 2.161609 CCTTTTAAGGCTTGTACTGCGG 59.838 50.000 10.69 0.00 39.76 5.69
849 850 1.152333 GGCCAGGAACCCACCTTTT 60.152 57.895 0.00 0.00 38.32 2.27
853 854 4.366684 CCAGGCCAGGAACCCACC 62.367 72.222 8.94 0.00 0.00 4.61
854 855 4.366684 CCCAGGCCAGGAACCCAC 62.367 72.222 17.38 0.00 0.00 4.61
855 856 4.938756 ACCCAGGCCAGGAACCCA 62.939 66.667 17.38 0.00 0.00 4.51
856 857 4.048470 GACCCAGGCCAGGAACCC 62.048 72.222 17.38 0.00 0.00 4.11
857 858 2.366153 TTTGACCCAGGCCAGGAACC 62.366 60.000 17.38 4.65 0.00 3.62
859 860 1.152830 GTTTGACCCAGGCCAGGAA 59.847 57.895 17.38 0.00 0.00 3.36
861 862 0.404040 TTAGTTTGACCCAGGCCAGG 59.596 55.000 7.34 7.34 0.00 4.45
862 863 2.094675 CATTAGTTTGACCCAGGCCAG 58.905 52.381 5.01 0.00 0.00 4.85
863 864 1.272425 CCATTAGTTTGACCCAGGCCA 60.272 52.381 5.01 0.00 0.00 5.36
864 865 1.474330 CCATTAGTTTGACCCAGGCC 58.526 55.000 0.00 0.00 0.00 5.19
865 866 1.474330 CCCATTAGTTTGACCCAGGC 58.526 55.000 0.00 0.00 0.00 4.85
879 880 2.875933 CCACGTTACATAATCGCCCATT 59.124 45.455 0.00 0.00 0.00 3.16
890 891 1.425412 GTCAGTTCGCCACGTTACAT 58.575 50.000 0.00 0.00 0.00 2.29
892 893 1.287041 GGGTCAGTTCGCCACGTTAC 61.287 60.000 0.00 0.00 0.00 2.50
917 918 1.516423 GGTAGTTGGAGCCGGAGAC 59.484 63.158 5.05 0.00 0.00 3.36
918 919 2.050350 CGGTAGTTGGAGCCGGAGA 61.050 63.158 5.05 0.00 41.60 3.71
919 920 2.494918 CGGTAGTTGGAGCCGGAG 59.505 66.667 5.05 0.00 41.60 4.63
920 921 3.766691 GCGGTAGTTGGAGCCGGA 61.767 66.667 5.05 0.00 45.02 5.14
921 922 3.718210 GAGCGGTAGTTGGAGCCGG 62.718 68.421 0.00 0.00 45.02 6.13
923 924 2.202756 CGAGCGGTAGTTGGAGCC 60.203 66.667 0.00 0.00 0.00 4.70
924 925 0.802607 CTTCGAGCGGTAGTTGGAGC 60.803 60.000 0.00 0.00 0.00 4.70
925 926 0.526662 ACTTCGAGCGGTAGTTGGAG 59.473 55.000 0.00 0.00 0.00 3.86
926 927 0.963962 AACTTCGAGCGGTAGTTGGA 59.036 50.000 0.66 0.00 31.31 3.53
927 928 1.068474 CAACTTCGAGCGGTAGTTGG 58.932 55.000 17.13 3.46 43.03 3.77
929 930 2.094854 CCTACAACTTCGAGCGGTAGTT 60.095 50.000 11.89 4.76 31.72 2.24
930 931 1.471684 CCTACAACTTCGAGCGGTAGT 59.528 52.381 11.89 0.00 31.72 2.73
931 932 1.798079 GCCTACAACTTCGAGCGGTAG 60.798 57.143 0.00 8.01 33.07 3.18
932 933 0.171903 GCCTACAACTTCGAGCGGTA 59.828 55.000 0.00 0.00 0.00 4.02
933 934 1.080025 GCCTACAACTTCGAGCGGT 60.080 57.895 0.00 0.00 0.00 5.68
934 935 1.078759 CAGCCTACAACTTCGAGCGG 61.079 60.000 0.00 0.00 0.00 5.52
935 936 1.687494 GCAGCCTACAACTTCGAGCG 61.687 60.000 0.00 0.00 0.00 5.03
936 937 0.390472 AGCAGCCTACAACTTCGAGC 60.390 55.000 0.00 0.00 0.00 5.03
937 938 1.067565 TGAGCAGCCTACAACTTCGAG 60.068 52.381 0.00 0.00 0.00 4.04
938 939 0.966179 TGAGCAGCCTACAACTTCGA 59.034 50.000 0.00 0.00 0.00 3.71
939 940 1.795768 TTGAGCAGCCTACAACTTCG 58.204 50.000 0.00 0.00 0.00 3.79
940 941 5.880054 TTATTTGAGCAGCCTACAACTTC 57.120 39.130 0.00 0.00 0.00 3.01
941 942 6.265422 ACTTTTATTTGAGCAGCCTACAACTT 59.735 34.615 0.00 0.00 0.00 2.66
942 943 5.770162 ACTTTTATTTGAGCAGCCTACAACT 59.230 36.000 0.00 0.00 0.00 3.16
943 944 5.858581 CACTTTTATTTGAGCAGCCTACAAC 59.141 40.000 0.00 0.00 0.00 3.32
944 945 5.564651 GCACTTTTATTTGAGCAGCCTACAA 60.565 40.000 0.00 0.00 0.00 2.41
945 946 4.082787 GCACTTTTATTTGAGCAGCCTACA 60.083 41.667 0.00 0.00 0.00 2.74
946 947 4.415735 GCACTTTTATTTGAGCAGCCTAC 58.584 43.478 0.00 0.00 0.00 3.18
956 957 5.046910 ACGTGATGAGGCACTTTTATTTG 57.953 39.130 0.00 0.00 41.55 2.32
960 961 3.325870 CAGACGTGATGAGGCACTTTTA 58.674 45.455 0.00 0.00 41.55 1.52
965 988 1.079543 AGCAGACGTGATGAGGCAC 60.080 57.895 0.00 0.00 35.46 5.01
968 991 1.142748 GGGAGCAGACGTGATGAGG 59.857 63.158 0.00 0.00 0.00 3.86
1167 1190 3.685214 CTCGTCCTCCTTCACCGCG 62.685 68.421 0.00 0.00 0.00 6.46
1219 1245 2.261671 CTGCGAGCGGTAGTTGGT 59.738 61.111 0.00 0.00 0.00 3.67
1301 1327 1.945354 GAGGCGTTCGATGGTCAGGA 61.945 60.000 0.00 0.00 0.00 3.86
1351 1383 3.240134 GAGGCAGGTGTTCGGCTGA 62.240 63.158 0.00 0.00 38.29 4.26
1556 1615 3.222603 TGCTCATACTTATGCTCGAGGA 58.777 45.455 15.58 12.84 33.76 3.71
1585 1644 3.468063 ACGAAGTGACCAGGTCCC 58.532 61.111 17.59 5.40 42.51 4.46
1682 1747 3.367292 GGTGATATTGCAGTTTGGTGTGG 60.367 47.826 0.00 0.00 0.00 4.17
1702 1767 0.035317 TTGACAAGCTCATCGCAGGT 59.965 50.000 0.00 0.00 42.61 4.00
1705 1770 1.718396 CTCTTGACAAGCTCATCGCA 58.282 50.000 10.50 0.00 42.61 5.10
1813 1890 2.566833 TCCCAGGTGTTGATTGACAG 57.433 50.000 0.00 0.00 0.00 3.51
1837 1914 2.915869 TGTCCCCTTGAGATACCTGTT 58.084 47.619 0.00 0.00 0.00 3.16
1888 1965 4.463879 CCCCTCGAGTGCCTGCAG 62.464 72.222 12.31 6.78 0.00 4.41
1907 1984 4.929808 GTGGTGACGATTCTGACAATAGTT 59.070 41.667 0.00 0.00 0.00 2.24
1908 1985 4.220821 AGTGGTGACGATTCTGACAATAGT 59.779 41.667 0.00 0.00 0.00 2.12
1926 2003 2.770802 CCATCTCATCTTCTCCAGTGGT 59.229 50.000 9.54 0.00 0.00 4.16
1977 2054 2.144833 TACCGAGGAAAAGCACGCGA 62.145 55.000 15.93 0.00 0.00 5.87
2064 2141 7.946381 TGTAAAGGCATTATCATTGTGGTAA 57.054 32.000 0.00 0.00 0.00 2.85
2301 3925 7.315066 TGATGCCACCATTAGATCAATAGTA 57.685 36.000 0.00 0.00 0.00 1.82
2331 3955 3.564511 GTTAAGCTCGTGTACGGTGTAA 58.435 45.455 4.44 0.00 40.29 2.41
2413 4039 4.992951 TCGGCTTGATGTGATGATAAGATG 59.007 41.667 0.00 0.00 0.00 2.90
2415 4041 4.670896 TCGGCTTGATGTGATGATAAGA 57.329 40.909 0.00 0.00 0.00 2.10
2501 4129 2.562635 CTATCTGCTGTTGCTGCATCT 58.437 47.619 1.84 0.00 37.65 2.90
2504 4132 0.321830 TGCTATCTGCTGTTGCTGCA 60.322 50.000 0.00 0.00 43.37 4.41
2506 4134 0.731417 GGTGCTATCTGCTGTTGCTG 59.269 55.000 0.00 0.00 43.37 4.41
2507 4135 0.325933 TGGTGCTATCTGCTGTTGCT 59.674 50.000 0.00 0.00 43.37 3.91
2508 4136 1.135575 GTTGGTGCTATCTGCTGTTGC 60.136 52.381 0.00 0.00 43.37 4.17
2509 4137 2.153645 TGTTGGTGCTATCTGCTGTTG 58.846 47.619 0.00 0.00 43.37 3.33
2510 4138 2.566833 TGTTGGTGCTATCTGCTGTT 57.433 45.000 0.00 0.00 43.37 3.16
2511 4139 2.566833 TTGTTGGTGCTATCTGCTGT 57.433 45.000 0.00 0.00 43.37 4.40
2512 4140 4.157289 AGAAATTGTTGGTGCTATCTGCTG 59.843 41.667 0.00 0.00 43.37 4.41
2513 4141 4.338879 AGAAATTGTTGGTGCTATCTGCT 58.661 39.130 0.00 0.00 43.37 4.24
2514 4142 4.708726 AGAAATTGTTGGTGCTATCTGC 57.291 40.909 0.00 0.00 43.25 4.26
2515 4143 6.037610 GGACTAGAAATTGTTGGTGCTATCTG 59.962 42.308 0.00 0.00 0.00 2.90
2516 4144 6.069963 AGGACTAGAAATTGTTGGTGCTATCT 60.070 38.462 0.00 0.00 0.00 1.98
2638 4302 1.733041 CGTGCTCGCCGAAGAAGAA 60.733 57.895 0.00 0.00 0.00 2.52
2817 4481 0.393537 GTGGTGGCTGATCCTCCTTG 60.394 60.000 4.03 0.00 46.37 3.61
2826 4490 1.227527 CTGACGTTGTGGTGGCTGA 60.228 57.895 0.00 0.00 0.00 4.26
2843 4507 5.651387 TTAGATCTATCTGCGCTTATGCT 57.349 39.130 9.73 0.00 37.76 3.79
2848 4512 8.097038 TCCATATTTTTAGATCTATCTGCGCTT 58.903 33.333 9.73 0.00 37.76 4.68
2942 4609 6.655003 TGAAAAATACGAAGGCAAGAGATCTT 59.345 34.615 0.00 0.00 36.45 2.40
3178 4898 6.855763 ACATGAATATTGGAGCAAAAGGAA 57.144 33.333 0.00 0.00 0.00 3.36
3247 4970 1.169661 AGGCCGACGAAACAATGCAA 61.170 50.000 0.00 0.00 0.00 4.08
3278 5003 4.072088 GCCCACGCGACTCAAACG 62.072 66.667 15.93 0.00 0.00 3.60
3377 5102 4.181309 GGGATTCTCTACTAATGCCTCG 57.819 50.000 0.00 0.00 40.57 4.63
3411 5137 0.245539 TGGTGGACGCAGCTACTAAC 59.754 55.000 0.00 0.00 0.00 2.34
3483 5211 2.991250 AGATAAGCAACAGCGTTCCAT 58.009 42.857 0.00 0.00 0.00 3.41
3490 5218 4.406943 GCAAGTACAAGATAAGCAACAGC 58.593 43.478 0.00 0.00 0.00 4.40
3498 5226 1.996898 CACGCCGCAAGTACAAGATAA 59.003 47.619 0.00 0.00 0.00 1.75
3567 5295 2.406616 CGCCCCGAATTTGGTCTGG 61.407 63.158 10.97 6.10 0.00 3.86
3613 5341 0.170561 CACGCTGCTAGACGGTACTT 59.829 55.000 0.00 0.00 0.00 2.24
3621 5349 2.709125 AAACACCGCACGCTGCTAGA 62.709 55.000 0.00 0.00 42.25 2.43
3692 5420 5.977129 CCAAAAATGTGGCGTTTATATCTCC 59.023 40.000 0.00 0.00 0.00 3.71
3697 5425 5.923733 ATCCCAAAAATGTGGCGTTTATA 57.076 34.783 0.00 0.00 37.34 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.