Multiple sequence alignment - TraesCS3B01G594000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G594000 chr3B 100.000 1475 0 0 1 1475 817467602 817466128 0.000000e+00 2724.0
1 TraesCS3B01G594000 chr3B 100.000 559 0 0 1795 2353 817465808 817465250 0.000000e+00 1033.0
2 TraesCS3B01G594000 chr3B 76.838 272 39 15 903 1168 823756500 823756247 5.280000e-27 132.0
3 TraesCS3B01G594000 chr3B 77.778 189 28 9 986 1168 824230468 824230288 1.150000e-18 104.0
4 TraesCS3B01G594000 chr3B 80.282 142 21 7 605 744 741580617 741580753 1.490000e-17 100.0
5 TraesCS3B01G594000 chr3D 91.556 1350 99 6 125 1460 607898182 607899530 0.000000e+00 1847.0
6 TraesCS3B01G594000 chr3D 83.051 590 78 12 889 1459 607885614 607886200 1.250000e-142 516.0
7 TraesCS3B01G594000 chr3D 90.909 143 8 3 1928 2065 607901318 607901460 1.110000e-43 187.0
8 TraesCS3B01G594000 chr3D 95.238 42 1 1 70 110 607898152 607898193 5.430000e-07 65.8
9 TraesCS3B01G594000 chr3A 90.547 1407 114 8 70 1460 740104065 740105468 0.000000e+00 1844.0
10 TraesCS3B01G594000 chr3A 75.735 272 42 16 903 1168 750607367 750607114 5.310000e-22 115.0
11 TraesCS3B01G594000 chr3A 96.552 58 1 1 1796 1853 740105456 740105512 6.920000e-16 95.3
12 TraesCS3B01G594000 chr7B 83.197 244 31 7 589 830 393858604 393858839 5.090000e-52 215.0
13 TraesCS3B01G594000 chr1B 84.946 186 25 3 593 776 357240997 357240813 3.990000e-43 185.0
14 TraesCS3B01G594000 chr6D 76.426 263 39 14 900 1157 455662573 455662817 1.140000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G594000 chr3B 817465250 817467602 2352 True 1878.500000 2724 100.000000 1 2353 2 chr3B.!!$R3 2352
1 TraesCS3B01G594000 chr3D 607898152 607901460 3308 False 699.933333 1847 92.567667 70 2065 3 chr3D.!!$F2 1995
2 TraesCS3B01G594000 chr3D 607885614 607886200 586 False 516.000000 516 83.051000 889 1459 1 chr3D.!!$F1 570
3 TraesCS3B01G594000 chr3A 740104065 740105512 1447 False 969.650000 1844 93.549500 70 1853 2 chr3A.!!$F1 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.032952 AAATGGCCGCATGCATCATC 59.967 50.0 19.57 2.63 43.89 2.92 F
176 203 0.105039 GACAGCTCCATAGTTCCCCG 59.895 60.0 0.00 0.00 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1023 1068 0.171903 GCACAAGCACCATAAGGCAG 59.828 55.0 0.0 0.0 41.58 4.85 R
2078 3826 0.031449 GTCGCTCTGCTACCATCTCC 59.969 60.0 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.333913 AATAATAAAATGGCCGCATGCA 57.666 36.364 19.57 0.00 43.89 3.96
23 24 2.914695 AATAAAATGGCCGCATGCAT 57.085 40.000 19.57 0.00 43.89 3.96
24 25 2.443887 ATAAAATGGCCGCATGCATC 57.556 45.000 19.57 8.10 43.89 3.91
25 26 1.109609 TAAAATGGCCGCATGCATCA 58.890 45.000 19.57 12.47 43.89 3.07
26 27 0.466543 AAAATGGCCGCATGCATCAT 59.533 45.000 19.57 14.21 43.89 2.45
27 28 0.032952 AAATGGCCGCATGCATCATC 59.967 50.000 19.57 2.63 43.89 2.92
28 29 2.137425 AATGGCCGCATGCATCATCG 62.137 55.000 19.57 0.46 43.89 3.84
29 30 2.974148 GGCCGCATGCATCATCGA 60.974 61.111 19.57 0.00 43.89 3.59
30 31 2.330372 GGCCGCATGCATCATCGAT 61.330 57.895 19.57 0.00 43.89 3.59
31 32 1.020861 GGCCGCATGCATCATCGATA 61.021 55.000 19.57 0.00 43.89 2.92
32 33 1.012086 GCCGCATGCATCATCGATAT 58.988 50.000 19.57 0.00 40.77 1.63
33 34 1.267882 GCCGCATGCATCATCGATATG 60.268 52.381 19.57 4.19 40.77 1.78
41 42 2.277969 CATCATCGATATGCAGAGGCC 58.722 52.381 0.00 0.00 40.13 5.19
42 43 0.244721 TCATCGATATGCAGAGGCCG 59.755 55.000 0.00 0.00 40.13 6.13
43 44 0.738762 CATCGATATGCAGAGGCCGG 60.739 60.000 0.00 0.00 40.13 6.13
44 45 1.892819 ATCGATATGCAGAGGCCGGG 61.893 60.000 2.18 0.00 40.13 5.73
45 46 2.348998 GATATGCAGAGGCCGGGG 59.651 66.667 2.18 0.00 40.13 5.73
46 47 3.252284 ATATGCAGAGGCCGGGGG 61.252 66.667 2.18 0.00 40.13 5.40
47 48 4.815973 TATGCAGAGGCCGGGGGT 62.816 66.667 2.18 0.00 40.13 4.95
64 65 2.579410 GGTGCACCCTCCTTTTCTAA 57.421 50.000 26.31 0.00 0.00 2.10
65 66 2.871453 GGTGCACCCTCCTTTTCTAAA 58.129 47.619 26.31 0.00 0.00 1.85
66 67 3.227614 GGTGCACCCTCCTTTTCTAAAA 58.772 45.455 26.31 0.00 0.00 1.52
67 68 3.639561 GGTGCACCCTCCTTTTCTAAAAA 59.360 43.478 26.31 0.00 0.00 1.94
110 137 0.537188 AGAACATCACCTGGCTACCG 59.463 55.000 0.00 0.00 0.00 4.02
111 138 1.078426 AACATCACCTGGCTACCGC 60.078 57.895 0.00 0.00 0.00 5.68
112 139 1.836999 AACATCACCTGGCTACCGCA 61.837 55.000 0.00 0.00 38.10 5.69
113 140 1.815421 CATCACCTGGCTACCGCAC 60.815 63.158 0.00 0.00 38.10 5.34
114 141 2.290287 ATCACCTGGCTACCGCACA 61.290 57.895 0.00 0.00 38.10 4.57
115 142 1.836999 ATCACCTGGCTACCGCACAA 61.837 55.000 0.00 0.00 38.10 3.33
116 143 2.034879 CACCTGGCTACCGCACAAG 61.035 63.158 0.00 0.00 38.10 3.16
117 144 2.214216 ACCTGGCTACCGCACAAGA 61.214 57.895 0.00 0.00 38.10 3.02
118 145 1.741770 CCTGGCTACCGCACAAGAC 60.742 63.158 0.00 0.00 38.10 3.01
119 146 1.741770 CTGGCTACCGCACAAGACC 60.742 63.158 0.00 0.00 38.10 3.85
120 147 2.436115 GGCTACCGCACAAGACCC 60.436 66.667 0.00 0.00 38.10 4.46
121 148 2.813908 GCTACCGCACAAGACCCG 60.814 66.667 0.00 0.00 35.78 5.28
122 149 2.813908 CTACCGCACAAGACCCGC 60.814 66.667 0.00 0.00 0.00 6.13
128 155 4.988598 CACAAGACCCGCGCACCT 62.989 66.667 8.75 0.00 0.00 4.00
129 156 4.988598 ACAAGACCCGCGCACCTG 62.989 66.667 8.75 0.00 0.00 4.00
146 173 2.162681 CCTGGCTACCCAAGTTTTCAG 58.837 52.381 0.00 0.00 41.58 3.02
176 203 0.105039 GACAGCTCCATAGTTCCCCG 59.895 60.000 0.00 0.00 0.00 5.73
178 205 0.105039 CAGCTCCATAGTTCCCCGAC 59.895 60.000 0.00 0.00 0.00 4.79
179 206 0.325296 AGCTCCATAGTTCCCCGACA 60.325 55.000 0.00 0.00 0.00 4.35
219 247 5.653255 AATACCTATGGCTCCATCAAAGT 57.347 39.130 4.41 2.19 37.82 2.66
334 362 2.432510 CGAAAGAAGCTCTACCTCCCAT 59.567 50.000 0.00 0.00 0.00 4.00
387 415 1.146930 TTCCCCATGATCAGAGCGC 59.853 57.895 0.00 0.00 0.00 5.92
388 416 1.340399 TTCCCCATGATCAGAGCGCT 61.340 55.000 11.27 11.27 0.00 5.92
416 444 0.179073 CTTGCACCATCCTACTCGGG 60.179 60.000 0.00 0.00 0.00 5.14
420 448 0.750546 CACCATCCTACTCGGGTCGA 60.751 60.000 0.00 0.00 0.00 4.20
424 452 2.102588 CCATCCTACTCGGGTCGAATTT 59.897 50.000 0.00 0.00 34.74 1.82
425 453 3.319972 CCATCCTACTCGGGTCGAATTTA 59.680 47.826 0.00 0.00 34.74 1.40
438 466 4.573201 GGTCGAATTTAATGGACGATGGAA 59.427 41.667 0.00 0.00 35.57 3.53
445 473 6.885952 TTTAATGGACGATGGAAAAACTGA 57.114 33.333 0.00 0.00 0.00 3.41
468 496 1.596477 GTCGAGCAGGATGATGGGC 60.596 63.158 0.00 0.00 39.69 5.36
497 525 1.948104 GCACATTGCGGGTGATAGTA 58.052 50.000 6.41 0.00 38.54 1.82
527 555 7.037438 GCTATTTCTGCCAAAGATTTGAATGA 58.963 34.615 6.87 0.00 40.55 2.57
617 645 8.888579 ACTAGTAAATACATACATGCAAGGAC 57.111 34.615 0.00 0.00 0.00 3.85
710 741 8.978539 TGTGATTAGCGTTGATATTGATAGTTC 58.021 33.333 0.00 0.00 0.00 3.01
735 766 8.432359 TCGTATGATATTAATTGCACGCTAAAG 58.568 33.333 0.00 0.00 0.00 1.85
756 787 2.636647 TGTTGAGTGCTCACCATTGA 57.363 45.000 0.79 0.00 39.66 2.57
783 815 5.698741 ATCAAGGTGTTGGATAGACATGA 57.301 39.130 0.00 0.00 34.09 3.07
831 863 2.501316 CTCCCTTTGGGCCTTTTTATGG 59.499 50.000 4.53 0.00 43.94 2.74
837 869 5.717654 CCTTTGGGCCTTTTTATGGTAGTAA 59.282 40.000 4.53 0.00 0.00 2.24
842 876 8.296211 TGGGCCTTTTTATGGTAGTAAATAAC 57.704 34.615 4.53 0.00 0.00 1.89
925 969 2.748461 GCTCTCTAGCTACGAGTGTG 57.252 55.000 15.45 10.46 45.85 3.82
976 1020 2.914908 CGCCCAAACAGAAACGGGG 61.915 63.158 0.00 0.00 39.26 5.73
994 1038 3.181474 CGGGGATAAGAGGTTTGAGTCTC 60.181 52.174 0.00 0.00 0.00 3.36
1023 1068 5.104259 TGGAGGGAAAAGCTATTCTTCTC 57.896 43.478 0.00 0.00 32.88 2.87
1056 1101 2.751806 GCTTGTGCAGCTAGGAAATTCT 59.248 45.455 0.00 0.00 46.27 2.40
1065 1110 5.448360 GCAGCTAGGAAATTCTGTTCATGTC 60.448 44.000 0.00 0.00 0.00 3.06
1080 1125 2.102420 TCATGTCGGTATGGAATCGCTT 59.898 45.455 0.00 0.00 0.00 4.68
1120 1165 4.040461 TGTTTCCTTTCTCCTCTCGAACAT 59.960 41.667 0.00 0.00 0.00 2.71
1121 1166 4.457834 TTCCTTTCTCCTCTCGAACATC 57.542 45.455 0.00 0.00 0.00 3.06
1161 1206 7.272948 GTCAGTTGAGATGCATGAATTTCTTTC 59.727 37.037 2.46 0.00 34.72 2.62
1283 1346 2.697751 CCAGAAGTCCTTCGGAGATCAT 59.302 50.000 8.48 0.00 43.97 2.45
1307 1370 1.933853 GTAAACTCGGCATGTAGGCTG 59.066 52.381 0.00 0.00 41.46 4.85
1308 1371 0.613260 AAACTCGGCATGTAGGCTGA 59.387 50.000 0.00 0.00 46.48 4.26
1408 1472 5.944135 TGGATAATGATGAGATCCAGCAAA 58.056 37.500 6.29 0.17 45.12 3.68
1438 1502 4.329392 TCTTTGTGACATGCATGTGAGAT 58.671 39.130 35.92 12.06 41.95 2.75
1855 1923 6.645306 TGTCGTGTGGAATATTAGATTTGGA 58.355 36.000 0.00 0.00 0.00 3.53
1893 1965 2.627945 GCCTCATGGTTCGTATGTTCA 58.372 47.619 0.00 0.00 35.27 3.18
1924 1996 8.299570 CAAGTTTTAGCATTATCTGTGGAAACT 58.700 33.333 0.00 0.00 35.54 2.66
1926 1998 6.662414 TTTAGCATTATCTGTGGAAACTCG 57.338 37.500 0.00 0.00 0.00 4.18
1945 3688 2.888414 TCGTGTCCATAGAAGTGTGTCA 59.112 45.455 0.00 0.00 0.00 3.58
1952 3695 4.532126 TCCATAGAAGTGTGTCAAGGACAT 59.468 41.667 2.02 0.00 44.63 3.06
1958 3701 2.172505 AGTGTGTCAAGGACATGAACCA 59.827 45.455 0.00 0.00 44.63 3.67
1961 3704 3.118075 TGTGTCAAGGACATGAACCAGAA 60.118 43.478 0.00 0.00 44.63 3.02
1962 3705 3.499918 GTGTCAAGGACATGAACCAGAAG 59.500 47.826 0.00 0.00 44.63 2.85
1963 3706 2.485814 GTCAAGGACATGAACCAGAAGC 59.514 50.000 0.00 0.00 32.09 3.86
1968 3716 0.250467 ACATGAACCAGAAGCGCAGT 60.250 50.000 11.47 0.00 0.00 4.40
1990 3738 4.420143 GGCGCGATATGCCGATAT 57.580 55.556 12.10 0.00 43.70 1.63
2045 3793 1.214367 ACAACGCGATCGAACTGTTT 58.786 45.000 21.57 5.77 39.41 2.83
2065 3813 5.995282 TGTTTGAACATCGGGCCTTATATAG 59.005 40.000 0.84 0.00 33.17 1.31
2066 3814 4.202245 TGAACATCGGGCCTTATATAGC 57.798 45.455 0.84 0.00 0.00 2.97
2067 3815 3.580895 TGAACATCGGGCCTTATATAGCA 59.419 43.478 0.84 0.00 0.00 3.49
2068 3816 3.611766 ACATCGGGCCTTATATAGCAC 57.388 47.619 0.84 0.00 0.00 4.40
2069 3817 2.236395 ACATCGGGCCTTATATAGCACC 59.764 50.000 0.84 0.00 0.00 5.01
2070 3818 0.892755 TCGGGCCTTATATAGCACCG 59.107 55.000 0.84 13.20 41.34 4.94
2071 3819 0.606604 CGGGCCTTATATAGCACCGT 59.393 55.000 0.84 0.00 37.76 4.83
2072 3820 1.001633 CGGGCCTTATATAGCACCGTT 59.998 52.381 0.84 0.00 37.76 4.44
2073 3821 2.549349 CGGGCCTTATATAGCACCGTTT 60.549 50.000 0.84 0.00 37.76 3.60
2074 3822 3.483421 GGGCCTTATATAGCACCGTTTT 58.517 45.455 0.84 0.00 0.00 2.43
2075 3823 3.252458 GGGCCTTATATAGCACCGTTTTG 59.748 47.826 0.84 0.00 0.00 2.44
2076 3824 4.131596 GGCCTTATATAGCACCGTTTTGA 58.868 43.478 0.00 0.00 0.00 2.69
2077 3825 4.577283 GGCCTTATATAGCACCGTTTTGAA 59.423 41.667 0.00 0.00 0.00 2.69
2078 3826 5.277828 GGCCTTATATAGCACCGTTTTGAAG 60.278 44.000 0.00 0.00 0.00 3.02
2079 3827 5.277828 GCCTTATATAGCACCGTTTTGAAGG 60.278 44.000 0.00 0.00 34.20 3.46
2080 3828 6.053005 CCTTATATAGCACCGTTTTGAAGGA 58.947 40.000 0.00 0.00 33.10 3.36
2081 3829 6.202954 CCTTATATAGCACCGTTTTGAAGGAG 59.797 42.308 0.00 0.00 33.10 3.69
2082 3830 3.695830 ATAGCACCGTTTTGAAGGAGA 57.304 42.857 0.00 0.00 0.00 3.71
2083 3831 2.568623 AGCACCGTTTTGAAGGAGAT 57.431 45.000 0.00 0.00 0.00 2.75
2084 3832 2.154462 AGCACCGTTTTGAAGGAGATG 58.846 47.619 0.00 0.00 0.00 2.90
2085 3833 1.200020 GCACCGTTTTGAAGGAGATGG 59.800 52.381 0.00 0.00 0.00 3.51
2086 3834 2.504367 CACCGTTTTGAAGGAGATGGT 58.496 47.619 0.00 0.00 31.74 3.55
2087 3835 3.670625 CACCGTTTTGAAGGAGATGGTA 58.329 45.455 0.00 0.00 30.51 3.25
2088 3836 3.684788 CACCGTTTTGAAGGAGATGGTAG 59.315 47.826 0.00 0.00 30.51 3.18
2089 3837 2.678336 CCGTTTTGAAGGAGATGGTAGC 59.322 50.000 0.00 0.00 0.00 3.58
2090 3838 3.334691 CGTTTTGAAGGAGATGGTAGCA 58.665 45.455 0.00 0.00 0.00 3.49
2091 3839 3.372206 CGTTTTGAAGGAGATGGTAGCAG 59.628 47.826 0.00 0.00 0.00 4.24
2092 3840 4.579869 GTTTTGAAGGAGATGGTAGCAGA 58.420 43.478 0.00 0.00 0.00 4.26
2093 3841 4.478206 TTTGAAGGAGATGGTAGCAGAG 57.522 45.455 0.00 0.00 0.00 3.35
2094 3842 1.759445 TGAAGGAGATGGTAGCAGAGC 59.241 52.381 0.00 0.00 0.00 4.09
2095 3843 0.749649 AAGGAGATGGTAGCAGAGCG 59.250 55.000 0.00 0.00 0.00 5.03
2096 3844 0.106469 AGGAGATGGTAGCAGAGCGA 60.106 55.000 0.00 0.00 0.00 4.93
2097 3845 0.031449 GGAGATGGTAGCAGAGCGAC 59.969 60.000 0.00 0.00 33.57 5.19
2098 3846 0.741326 GAGATGGTAGCAGAGCGACA 59.259 55.000 0.00 0.00 35.94 4.35
2099 3847 1.339610 GAGATGGTAGCAGAGCGACAT 59.660 52.381 0.00 1.05 35.94 3.06
2100 3848 1.068281 AGATGGTAGCAGAGCGACATG 59.932 52.381 0.00 0.00 35.94 3.21
2101 3849 1.067669 GATGGTAGCAGAGCGACATGA 59.932 52.381 0.00 0.00 35.94 3.07
2102 3850 0.457443 TGGTAGCAGAGCGACATGAG 59.543 55.000 0.00 0.00 35.94 2.90
2103 3851 0.457851 GGTAGCAGAGCGACATGAGT 59.542 55.000 0.00 0.00 35.94 3.41
2104 3852 1.134965 GGTAGCAGAGCGACATGAGTT 60.135 52.381 0.00 0.00 35.94 3.01
2105 3853 2.611518 GTAGCAGAGCGACATGAGTTT 58.388 47.619 0.00 0.00 34.45 2.66
2106 3854 1.436600 AGCAGAGCGACATGAGTTTG 58.563 50.000 0.00 0.00 0.00 2.93
2107 3855 1.001293 AGCAGAGCGACATGAGTTTGA 59.999 47.619 0.00 0.00 0.00 2.69
2108 3856 1.392853 GCAGAGCGACATGAGTTTGAG 59.607 52.381 0.00 0.00 0.00 3.02
2109 3857 1.998315 CAGAGCGACATGAGTTTGAGG 59.002 52.381 0.00 0.00 0.00 3.86
2110 3858 1.895798 AGAGCGACATGAGTTTGAGGA 59.104 47.619 0.00 0.00 0.00 3.71
2111 3859 2.300152 AGAGCGACATGAGTTTGAGGAA 59.700 45.455 0.00 0.00 0.00 3.36
2112 3860 2.670414 GAGCGACATGAGTTTGAGGAAG 59.330 50.000 0.00 0.00 0.00 3.46
2113 3861 2.037772 AGCGACATGAGTTTGAGGAAGT 59.962 45.455 0.00 0.00 0.00 3.01
2114 3862 2.413453 GCGACATGAGTTTGAGGAAGTC 59.587 50.000 0.00 0.00 38.05 3.01
2115 3863 2.663602 CGACATGAGTTTGAGGAAGTCG 59.336 50.000 0.00 0.00 40.02 4.18
2116 3864 2.996621 GACATGAGTTTGAGGAAGTCGG 59.003 50.000 0.00 0.00 40.02 4.79
2117 3865 2.368875 ACATGAGTTTGAGGAAGTCGGT 59.631 45.455 0.00 0.00 40.02 4.69
2118 3866 3.181454 ACATGAGTTTGAGGAAGTCGGTT 60.181 43.478 0.00 0.00 40.02 4.44
2119 3867 3.107642 TGAGTTTGAGGAAGTCGGTTC 57.892 47.619 0.00 0.00 40.02 3.62
2132 3880 4.920828 GGTTCCAACCTCCAAGCA 57.079 55.556 0.83 0.00 45.75 3.91
2133 3881 3.363787 GGTTCCAACCTCCAAGCAT 57.636 52.632 0.83 0.00 45.75 3.79
2134 3882 0.890683 GGTTCCAACCTCCAAGCATG 59.109 55.000 0.83 0.00 45.75 4.06
2135 3883 1.547675 GGTTCCAACCTCCAAGCATGA 60.548 52.381 0.00 0.00 45.75 3.07
2136 3884 2.238521 GTTCCAACCTCCAAGCATGAA 58.761 47.619 0.00 0.00 0.00 2.57
2137 3885 2.827921 GTTCCAACCTCCAAGCATGAAT 59.172 45.455 0.00 0.00 0.00 2.57
2138 3886 2.449464 TCCAACCTCCAAGCATGAATG 58.551 47.619 0.00 0.00 0.00 2.67
2139 3887 2.041485 TCCAACCTCCAAGCATGAATGA 59.959 45.455 0.00 0.00 0.00 2.57
2140 3888 2.165030 CCAACCTCCAAGCATGAATGAC 59.835 50.000 0.00 0.00 0.00 3.06
2141 3889 1.742761 ACCTCCAAGCATGAATGACG 58.257 50.000 0.00 0.00 0.00 4.35
2142 3890 1.019673 CCTCCAAGCATGAATGACGG 58.980 55.000 0.00 0.00 0.00 4.79
2143 3891 0.379669 CTCCAAGCATGAATGACGGC 59.620 55.000 0.00 0.00 0.00 5.68
2144 3892 1.031571 TCCAAGCATGAATGACGGCC 61.032 55.000 0.00 0.00 0.00 6.13
2145 3893 1.314534 CCAAGCATGAATGACGGCCA 61.315 55.000 2.24 0.00 0.00 5.36
2146 3894 0.527113 CAAGCATGAATGACGGCCAA 59.473 50.000 2.24 0.00 0.00 4.52
2147 3895 1.067706 CAAGCATGAATGACGGCCAAA 60.068 47.619 2.24 0.00 0.00 3.28
2148 3896 0.527565 AGCATGAATGACGGCCAAAC 59.472 50.000 2.24 0.00 0.00 2.93
2149 3897 0.527565 GCATGAATGACGGCCAAACT 59.472 50.000 2.24 0.00 0.00 2.66
2150 3898 1.067635 GCATGAATGACGGCCAAACTT 60.068 47.619 2.24 0.00 0.00 2.66
2151 3899 2.598589 CATGAATGACGGCCAAACTTG 58.401 47.619 2.24 0.00 0.00 3.16
2152 3900 1.974265 TGAATGACGGCCAAACTTGA 58.026 45.000 2.24 0.00 0.00 3.02
2153 3901 2.513753 TGAATGACGGCCAAACTTGAT 58.486 42.857 2.24 0.00 0.00 2.57
2154 3902 2.890311 TGAATGACGGCCAAACTTGATT 59.110 40.909 2.24 0.00 0.00 2.57
2155 3903 4.075682 TGAATGACGGCCAAACTTGATTA 58.924 39.130 2.24 0.00 0.00 1.75
2156 3904 4.083003 TGAATGACGGCCAAACTTGATTAC 60.083 41.667 2.24 0.00 0.00 1.89
2157 3905 2.852449 TGACGGCCAAACTTGATTACA 58.148 42.857 2.24 0.00 0.00 2.41
2158 3906 3.215151 TGACGGCCAAACTTGATTACAA 58.785 40.909 2.24 0.00 34.65 2.41
2159 3907 3.632604 TGACGGCCAAACTTGATTACAAA 59.367 39.130 2.24 0.00 35.49 2.83
2160 3908 4.279671 TGACGGCCAAACTTGATTACAAAT 59.720 37.500 2.24 0.00 35.49 2.32
2161 3909 5.208463 ACGGCCAAACTTGATTACAAATT 57.792 34.783 2.24 0.00 35.49 1.82
2162 3910 5.606505 ACGGCCAAACTTGATTACAAATTT 58.393 33.333 2.24 0.00 36.16 1.82
2163 3911 6.052360 ACGGCCAAACTTGATTACAAATTTT 58.948 32.000 2.24 0.00 34.04 1.82
2164 3912 6.201997 ACGGCCAAACTTGATTACAAATTTTC 59.798 34.615 2.24 0.00 34.04 2.29
2165 3913 6.201806 CGGCCAAACTTGATTACAAATTTTCA 59.798 34.615 2.24 0.00 34.04 2.69
2166 3914 7.569226 CGGCCAAACTTGATTACAAATTTTCAG 60.569 37.037 2.24 0.00 34.04 3.02
2167 3915 7.226523 GGCCAAACTTGATTACAAATTTTCAGT 59.773 33.333 0.00 0.00 34.04 3.41
2168 3916 8.611757 GCCAAACTTGATTACAAATTTTCAGTT 58.388 29.630 0.00 0.00 34.04 3.16
2202 3950 8.365060 TGATTGATCAATCCAATTAACAAGGT 57.635 30.769 34.65 6.39 44.93 3.50
2203 3951 8.252417 TGATTGATCAATCCAATTAACAAGGTG 58.748 33.333 34.65 0.00 44.93 4.00
2204 3952 7.773489 TTGATCAATCCAATTAACAAGGTGA 57.227 32.000 3.38 0.00 0.00 4.02
2205 3953 7.959658 TGATCAATCCAATTAACAAGGTGAT 57.040 32.000 0.00 0.00 0.00 3.06
2206 3954 7.774134 TGATCAATCCAATTAACAAGGTGATG 58.226 34.615 0.00 0.00 0.00 3.07
2207 3955 7.396907 TGATCAATCCAATTAACAAGGTGATGT 59.603 33.333 0.00 0.00 34.24 3.06
2208 3956 6.923012 TCAATCCAATTAACAAGGTGATGTG 58.077 36.000 0.00 0.00 32.81 3.21
2209 3957 6.493115 TCAATCCAATTAACAAGGTGATGTGT 59.507 34.615 0.00 0.00 32.81 3.72
2210 3958 6.916360 ATCCAATTAACAAGGTGATGTGTT 57.084 33.333 0.00 0.00 40.88 3.32
2211 3959 8.303156 CAATCCAATTAACAAGGTGATGTGTTA 58.697 33.333 0.00 0.00 38.80 2.41
2212 3960 8.593945 ATCCAATTAACAAGGTGATGTGTTAT 57.406 30.769 0.00 0.00 39.34 1.89
2213 3961 9.693739 ATCCAATTAACAAGGTGATGTGTTATA 57.306 29.630 0.00 0.00 39.34 0.98
2214 3962 8.952278 TCCAATTAACAAGGTGATGTGTTATAC 58.048 33.333 0.00 0.00 39.34 1.47
2215 3963 8.735315 CCAATTAACAAGGTGATGTGTTATACA 58.265 33.333 0.00 0.00 44.87 2.29
2227 3975 5.112220 TGTGTTATACATACCGTCGATCC 57.888 43.478 0.00 0.00 33.42 3.36
2228 3976 4.579753 TGTGTTATACATACCGTCGATCCA 59.420 41.667 0.00 0.00 33.42 3.41
2229 3977 5.067544 TGTGTTATACATACCGTCGATCCAA 59.932 40.000 0.00 0.00 33.42 3.53
2230 3978 5.978919 GTGTTATACATACCGTCGATCCAAA 59.021 40.000 0.00 0.00 0.00 3.28
2231 3979 6.643770 GTGTTATACATACCGTCGATCCAAAT 59.356 38.462 0.00 0.00 0.00 2.32
2232 3980 7.170320 GTGTTATACATACCGTCGATCCAAATT 59.830 37.037 0.00 0.00 0.00 1.82
2233 3981 7.170151 TGTTATACATACCGTCGATCCAAATTG 59.830 37.037 0.00 0.00 0.00 2.32
2234 3982 4.131649 ACATACCGTCGATCCAAATTGA 57.868 40.909 0.00 0.00 0.00 2.57
2235 3983 4.509616 ACATACCGTCGATCCAAATTGAA 58.490 39.130 0.00 0.00 0.00 2.69
2236 3984 4.331717 ACATACCGTCGATCCAAATTGAAC 59.668 41.667 0.00 0.00 0.00 3.18
2237 3985 3.053831 ACCGTCGATCCAAATTGAACT 57.946 42.857 0.00 0.00 0.00 3.01
2238 3986 4.196626 ACCGTCGATCCAAATTGAACTA 57.803 40.909 0.00 0.00 0.00 2.24
2239 3987 3.930848 ACCGTCGATCCAAATTGAACTAC 59.069 43.478 0.00 0.00 0.00 2.73
2240 3988 3.930229 CCGTCGATCCAAATTGAACTACA 59.070 43.478 0.00 0.00 0.00 2.74
2241 3989 4.390603 CCGTCGATCCAAATTGAACTACAA 59.609 41.667 0.00 0.00 42.95 2.41
2242 3990 5.445939 CCGTCGATCCAAATTGAACTACAAG 60.446 44.000 0.00 0.00 42.02 3.16
2243 3991 5.120208 CGTCGATCCAAATTGAACTACAAGT 59.880 40.000 0.00 0.00 42.02 3.16
2244 3992 6.309494 CGTCGATCCAAATTGAACTACAAGTA 59.691 38.462 0.00 0.00 42.02 2.24
2245 3993 7.462856 CGTCGATCCAAATTGAACTACAAGTAG 60.463 40.741 5.72 5.72 42.02 2.57
2246 3994 7.544566 GTCGATCCAAATTGAACTACAAGTAGA 59.455 37.037 13.79 0.00 42.02 2.59
2247 3995 8.092068 TCGATCCAAATTGAACTACAAGTAGAA 58.908 33.333 13.79 0.00 42.02 2.10
2248 3996 8.169268 CGATCCAAATTGAACTACAAGTAGAAC 58.831 37.037 13.79 7.59 42.02 3.01
2249 3997 7.416154 TCCAAATTGAACTACAAGTAGAACG 57.584 36.000 13.79 0.00 42.02 3.95
2250 3998 6.425721 TCCAAATTGAACTACAAGTAGAACGG 59.574 38.462 13.79 3.53 42.02 4.44
2251 3999 6.204108 CCAAATTGAACTACAAGTAGAACGGT 59.796 38.462 13.79 0.00 42.02 4.83
2252 4000 6.780706 AATTGAACTACAAGTAGAACGGTG 57.219 37.500 13.79 0.00 42.02 4.94
2253 4001 5.518848 TTGAACTACAAGTAGAACGGTGA 57.481 39.130 13.79 0.00 36.97 4.02
2254 4002 5.518848 TGAACTACAAGTAGAACGGTGAA 57.481 39.130 13.79 0.00 36.97 3.18
2255 4003 5.284079 TGAACTACAAGTAGAACGGTGAAC 58.716 41.667 13.79 0.00 36.97 3.18
2256 4004 5.068198 TGAACTACAAGTAGAACGGTGAACT 59.932 40.000 13.79 0.00 36.97 3.01
2257 4005 6.262944 TGAACTACAAGTAGAACGGTGAACTA 59.737 38.462 13.79 0.00 36.97 2.24
2258 4006 6.251655 ACTACAAGTAGAACGGTGAACTAG 57.748 41.667 13.79 0.00 36.97 2.57
2259 4007 5.767168 ACTACAAGTAGAACGGTGAACTAGT 59.233 40.000 13.79 0.00 36.97 2.57
2260 4008 6.936900 ACTACAAGTAGAACGGTGAACTAGTA 59.063 38.462 13.79 0.00 36.97 1.82
2261 4009 6.251655 ACAAGTAGAACGGTGAACTAGTAG 57.748 41.667 0.00 0.00 0.00 2.57
2262 4010 5.182760 ACAAGTAGAACGGTGAACTAGTAGG 59.817 44.000 0.00 0.00 0.00 3.18
2263 4011 5.171339 AGTAGAACGGTGAACTAGTAGGA 57.829 43.478 0.00 0.00 0.00 2.94
2264 4012 5.564550 AGTAGAACGGTGAACTAGTAGGAA 58.435 41.667 0.00 0.00 0.00 3.36
2265 4013 6.186234 AGTAGAACGGTGAACTAGTAGGAAT 58.814 40.000 0.00 0.00 0.00 3.01
2266 4014 5.997384 AGAACGGTGAACTAGTAGGAATT 57.003 39.130 0.00 0.00 0.00 2.17
2267 4015 7.831193 AGTAGAACGGTGAACTAGTAGGAATTA 59.169 37.037 0.00 0.00 0.00 1.40
2268 4016 7.472334 AGAACGGTGAACTAGTAGGAATTAA 57.528 36.000 0.00 0.00 0.00 1.40
2269 4017 8.075761 AGAACGGTGAACTAGTAGGAATTAAT 57.924 34.615 0.00 0.00 0.00 1.40
2270 4018 8.537858 AGAACGGTGAACTAGTAGGAATTAATT 58.462 33.333 0.00 0.00 0.00 1.40
2271 4019 8.488651 AACGGTGAACTAGTAGGAATTAATTG 57.511 34.615 5.17 0.00 0.00 2.32
2272 4020 6.537660 ACGGTGAACTAGTAGGAATTAATTGC 59.462 38.462 11.44 11.44 0.00 3.56
2273 4021 6.537301 CGGTGAACTAGTAGGAATTAATTGCA 59.463 38.462 20.17 5.34 0.00 4.08
2274 4022 7.254455 CGGTGAACTAGTAGGAATTAATTGCAG 60.254 40.741 20.17 11.64 0.00 4.41
2275 4023 7.553044 GGTGAACTAGTAGGAATTAATTGCAGT 59.447 37.037 20.17 12.21 0.00 4.40
2276 4024 9.595823 GTGAACTAGTAGGAATTAATTGCAGTA 57.404 33.333 20.17 12.19 0.00 2.74
2292 4040 6.539649 TTGCAGTATATTAACTCGAATGGC 57.460 37.500 0.00 0.00 0.00 4.40
2293 4041 4.994852 TGCAGTATATTAACTCGAATGGCC 59.005 41.667 0.00 0.00 0.00 5.36
2294 4042 4.091509 GCAGTATATTAACTCGAATGGCCG 59.908 45.833 0.00 0.00 0.00 6.13
2295 4043 5.227908 CAGTATATTAACTCGAATGGCCGT 58.772 41.667 0.00 0.00 0.00 5.68
2296 4044 5.118664 CAGTATATTAACTCGAATGGCCGTG 59.881 44.000 0.00 0.00 0.00 4.94
2297 4045 2.684001 ATTAACTCGAATGGCCGTGA 57.316 45.000 0.00 0.00 0.00 4.35
2298 4046 2.459060 TTAACTCGAATGGCCGTGAA 57.541 45.000 0.00 0.00 0.00 3.18
2299 4047 2.004583 TAACTCGAATGGCCGTGAAG 57.995 50.000 0.00 0.00 0.00 3.02
2300 4048 1.298859 AACTCGAATGGCCGTGAAGC 61.299 55.000 0.00 0.00 0.00 3.86
2301 4049 1.741401 CTCGAATGGCCGTGAAGCA 60.741 57.895 0.00 0.00 0.00 3.91
2302 4050 1.699656 CTCGAATGGCCGTGAAGCAG 61.700 60.000 0.00 0.00 0.00 4.24
2303 4051 2.486966 GAATGGCCGTGAAGCAGC 59.513 61.111 0.00 0.00 0.00 5.25
2304 4052 2.282391 AATGGCCGTGAAGCAGCA 60.282 55.556 0.00 0.00 0.00 4.41
2305 4053 2.533391 GAATGGCCGTGAAGCAGCAC 62.533 60.000 0.00 0.00 35.46 4.40
2311 4059 3.932289 GTGAAGCAGCACGTACGT 58.068 55.556 16.72 16.72 0.00 3.57
2312 4060 3.096541 GTGAAGCAGCACGTACGTA 57.903 52.632 22.34 0.00 0.00 3.57
2313 4061 1.625616 GTGAAGCAGCACGTACGTAT 58.374 50.000 22.34 10.16 0.00 3.06
2314 4062 1.582502 GTGAAGCAGCACGTACGTATC 59.417 52.381 22.34 15.55 0.00 2.24
2315 4063 0.838229 GAAGCAGCACGTACGTATCG 59.162 55.000 22.34 12.77 0.00 2.92
2316 4064 0.169672 AAGCAGCACGTACGTATCGT 59.830 50.000 22.34 14.56 44.35 3.73
2317 4065 0.169672 AGCAGCACGTACGTATCGTT 59.830 50.000 22.34 7.11 41.54 3.85
2318 4066 0.564767 GCAGCACGTACGTATCGTTC 59.435 55.000 22.34 13.53 41.54 3.95
2324 4072 1.666904 CGTACGTATCGTTCGGATGG 58.333 55.000 7.22 0.00 44.26 3.51
2325 4073 1.261354 CGTACGTATCGTTCGGATGGA 59.739 52.381 7.22 0.00 44.26 3.41
2326 4074 2.661169 CGTACGTATCGTTCGGATGGAG 60.661 54.545 7.22 0.00 44.26 3.86
2327 4075 1.671979 ACGTATCGTTCGGATGGAGA 58.328 50.000 0.00 0.00 36.35 3.71
2328 4076 2.019249 ACGTATCGTTCGGATGGAGAA 58.981 47.619 0.00 0.00 36.35 2.87
2329 4077 2.621998 ACGTATCGTTCGGATGGAGAAT 59.378 45.455 0.00 0.00 36.35 2.40
2330 4078 2.980476 CGTATCGTTCGGATGGAGAATG 59.020 50.000 0.00 0.00 36.55 2.67
2331 4079 3.304458 CGTATCGTTCGGATGGAGAATGA 60.304 47.826 3.74 3.74 44.59 2.57
2332 4080 3.819564 ATCGTTCGGATGGAGAATGAA 57.180 42.857 5.17 0.00 43.96 2.57
2333 4081 3.603158 TCGTTCGGATGGAGAATGAAA 57.397 42.857 0.00 0.00 39.73 2.69
2334 4082 4.137116 TCGTTCGGATGGAGAATGAAAT 57.863 40.909 0.00 0.00 39.73 2.17
2335 4083 5.270893 TCGTTCGGATGGAGAATGAAATA 57.729 39.130 0.00 0.00 39.73 1.40
2336 4084 5.666462 TCGTTCGGATGGAGAATGAAATAA 58.334 37.500 0.00 0.00 39.73 1.40
2337 4085 6.110033 TCGTTCGGATGGAGAATGAAATAAA 58.890 36.000 0.00 0.00 39.73 1.40
2338 4086 6.596106 TCGTTCGGATGGAGAATGAAATAAAA 59.404 34.615 0.00 0.00 39.73 1.52
2339 4087 7.119992 TCGTTCGGATGGAGAATGAAATAAAAA 59.880 33.333 0.00 0.00 39.73 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.701765 TGCATGCGGCCATTTTATTATTT 58.298 34.783 14.09 0.00 43.89 1.40
1 2 4.333913 TGCATGCGGCCATTTTATTATT 57.666 36.364 14.09 0.00 43.89 1.40
2 3 4.021280 TGATGCATGCGGCCATTTTATTAT 60.021 37.500 14.09 0.00 43.89 1.28
3 4 3.320256 TGATGCATGCGGCCATTTTATTA 59.680 39.130 14.09 0.00 43.89 0.98
4 5 2.102757 TGATGCATGCGGCCATTTTATT 59.897 40.909 14.09 0.00 43.89 1.40
5 6 1.687660 TGATGCATGCGGCCATTTTAT 59.312 42.857 14.09 0.00 43.89 1.40
6 7 1.109609 TGATGCATGCGGCCATTTTA 58.890 45.000 14.09 0.00 43.89 1.52
7 8 0.466543 ATGATGCATGCGGCCATTTT 59.533 45.000 14.09 0.00 43.89 1.82
8 9 0.032952 GATGATGCATGCGGCCATTT 59.967 50.000 14.09 0.00 43.89 2.32
9 10 1.663739 GATGATGCATGCGGCCATT 59.336 52.632 14.09 0.00 43.89 3.16
10 11 2.622962 CGATGATGCATGCGGCCAT 61.623 57.895 14.09 15.20 43.89 4.40
11 12 3.281395 CGATGATGCATGCGGCCA 61.281 61.111 14.09 10.90 43.89 5.36
12 13 1.020861 TATCGATGATGCATGCGGCC 61.021 55.000 14.09 5.01 43.89 6.13
13 14 1.012086 ATATCGATGATGCATGCGGC 58.988 50.000 14.09 7.96 45.13 6.53
14 15 2.732001 CATATCGATGATGCATGCGG 57.268 50.000 14.09 0.00 34.73 5.69
21 22 2.277969 GGCCTCTGCATATCGATGATG 58.722 52.381 8.54 9.01 40.13 3.07
22 23 1.134877 CGGCCTCTGCATATCGATGAT 60.135 52.381 8.54 0.00 40.13 2.45
23 24 0.244721 CGGCCTCTGCATATCGATGA 59.755 55.000 8.54 0.00 40.13 2.92
24 25 0.738762 CCGGCCTCTGCATATCGATG 60.739 60.000 8.54 0.00 40.13 3.84
25 26 1.593787 CCGGCCTCTGCATATCGAT 59.406 57.895 2.16 2.16 40.13 3.59
26 27 2.574018 CCCGGCCTCTGCATATCGA 61.574 63.158 0.00 0.00 40.13 3.59
27 28 2.047844 CCCGGCCTCTGCATATCG 60.048 66.667 0.00 0.00 40.13 2.92
28 29 2.348998 CCCCGGCCTCTGCATATC 59.651 66.667 0.00 0.00 40.13 1.63
29 30 3.252284 CCCCCGGCCTCTGCATAT 61.252 66.667 0.00 0.00 40.13 1.78
30 31 4.815973 ACCCCCGGCCTCTGCATA 62.816 66.667 0.00 0.00 40.13 3.14
45 46 2.579410 TTAGAAAAGGAGGGTGCACC 57.421 50.000 28.57 28.57 40.67 5.01
46 47 4.929819 TTTTTAGAAAAGGAGGGTGCAC 57.070 40.909 8.80 8.80 0.00 4.57
65 66 3.070748 GTGCACAAGGTTGGTTGTTTTT 58.929 40.909 13.17 0.00 38.65 1.94
66 67 2.301583 AGTGCACAAGGTTGGTTGTTTT 59.698 40.909 21.04 0.00 38.65 2.43
67 68 1.899142 AGTGCACAAGGTTGGTTGTTT 59.101 42.857 21.04 0.00 38.65 2.83
68 69 1.555967 AGTGCACAAGGTTGGTTGTT 58.444 45.000 21.04 0.00 38.65 2.83
77 78 3.814842 TGATGTTCTACAAGTGCACAAGG 59.185 43.478 21.04 10.21 0.00 3.61
111 138 4.988598 AGGTGCGCGGGTCTTGTG 62.989 66.667 8.83 0.00 0.00 3.33
112 139 4.988598 CAGGTGCGCGGGTCTTGT 62.989 66.667 8.83 0.00 0.00 3.16
123 150 0.539669 AAACTTGGGTAGCCAGGTGC 60.540 55.000 27.13 0.00 41.71 5.01
124 151 1.886542 GAAAACTTGGGTAGCCAGGTG 59.113 52.381 27.13 16.94 30.53 4.00
125 152 1.497286 TGAAAACTTGGGTAGCCAGGT 59.503 47.619 21.90 21.90 0.00 4.00
126 153 2.162681 CTGAAAACTTGGGTAGCCAGG 58.837 52.381 20.51 20.51 0.00 4.45
127 154 2.162681 CCTGAAAACTTGGGTAGCCAG 58.837 52.381 14.38 10.84 0.00 4.85
128 155 1.821666 GCCTGAAAACTTGGGTAGCCA 60.822 52.381 10.27 10.27 0.00 4.75
129 156 0.888619 GCCTGAAAACTTGGGTAGCC 59.111 55.000 3.29 3.29 0.00 3.93
130 157 1.541588 CTGCCTGAAAACTTGGGTAGC 59.458 52.381 0.00 0.00 0.00 3.58
131 158 2.554032 CACTGCCTGAAAACTTGGGTAG 59.446 50.000 0.00 0.00 37.53 3.18
132 159 2.582052 CACTGCCTGAAAACTTGGGTA 58.418 47.619 0.00 0.00 0.00 3.69
133 160 1.402787 CACTGCCTGAAAACTTGGGT 58.597 50.000 0.00 0.00 0.00 4.51
134 161 0.032540 GCACTGCCTGAAAACTTGGG 59.967 55.000 0.00 0.00 0.00 4.12
135 162 1.035139 AGCACTGCCTGAAAACTTGG 58.965 50.000 0.00 0.00 0.00 3.61
136 163 3.503363 TCATAGCACTGCCTGAAAACTTG 59.497 43.478 0.00 0.00 0.00 3.16
168 195 7.798071 TGTTCTAAATAATATGTCGGGGAACT 58.202 34.615 0.00 0.00 33.08 3.01
170 197 8.047911 TGTTGTTCTAAATAATATGTCGGGGAA 58.952 33.333 0.00 0.00 0.00 3.97
172 199 7.795482 TGTTGTTCTAAATAATATGTCGGGG 57.205 36.000 0.00 0.00 0.00 5.73
252 280 8.087750 GTGATCCAACAAAATTAGGATTGACAA 58.912 33.333 0.00 0.00 40.80 3.18
255 283 7.232330 TGTGTGATCCAACAAAATTAGGATTGA 59.768 33.333 0.00 0.00 40.80 2.57
256 284 7.329226 GTGTGTGATCCAACAAAATTAGGATTG 59.671 37.037 0.00 0.00 40.80 2.67
258 286 6.493115 TGTGTGTGATCCAACAAAATTAGGAT 59.507 34.615 0.00 0.00 43.29 3.24
334 362 0.250424 CATCAGTCATATGGCGGCCA 60.250 55.000 26.11 26.11 38.19 5.36
342 370 4.671831 ACGAGGATCCTCATCAGTCATAT 58.328 43.478 35.32 9.25 42.86 1.78
387 415 0.252479 ATGGTGCAAGAGGCTCTCAG 59.748 55.000 19.03 14.55 45.15 3.35
388 416 0.251354 GATGGTGCAAGAGGCTCTCA 59.749 55.000 19.03 11.42 45.15 3.27
416 444 5.728351 TTCCATCGTCCATTAAATTCGAC 57.272 39.130 0.00 0.00 33.55 4.20
420 448 7.812669 GTCAGTTTTTCCATCGTCCATTAAATT 59.187 33.333 0.00 0.00 0.00 1.82
424 452 4.698304 GGTCAGTTTTTCCATCGTCCATTA 59.302 41.667 0.00 0.00 0.00 1.90
425 453 3.506067 GGTCAGTTTTTCCATCGTCCATT 59.494 43.478 0.00 0.00 0.00 3.16
438 466 0.387929 TGCTCGACGAGGTCAGTTTT 59.612 50.000 25.31 0.00 32.09 2.43
445 473 0.753479 ATCATCCTGCTCGACGAGGT 60.753 55.000 25.31 0.00 0.00 3.85
468 496 1.465689 CCGCAATGTGCTAAAGAACGG 60.466 52.381 0.00 0.00 42.25 4.44
494 522 3.838244 TGGCAGAAATAGCGGATTACT 57.162 42.857 0.00 0.00 0.00 2.24
497 525 3.620488 TCTTTGGCAGAAATAGCGGATT 58.380 40.909 0.00 0.00 0.00 3.01
527 555 1.065491 TGTGCACCTTTGAGTGTGACT 60.065 47.619 15.69 0.00 40.04 3.41
707 738 6.590357 AGCGTGCAATTAATATCATACGAAC 58.410 36.000 12.01 0.65 32.58 3.95
710 741 8.432359 TCTTTAGCGTGCAATTAATATCATACG 58.568 33.333 0.00 0.00 0.00 3.06
756 787 4.702131 GTCTATCCAACACCTTGATTGCTT 59.298 41.667 0.00 0.00 0.00 3.91
783 815 4.850680 TCAACTAATCCCAGCCGTAAAAT 58.149 39.130 0.00 0.00 0.00 1.82
942 986 2.080693 GGGCGTCAACAATCATACACA 58.919 47.619 0.00 0.00 0.00 3.72
949 993 1.606668 TCTGTTTGGGCGTCAACAATC 59.393 47.619 0.00 0.00 34.67 2.67
953 997 1.835121 GTTTCTGTTTGGGCGTCAAC 58.165 50.000 0.00 0.00 34.67 3.18
955 999 1.440938 CCGTTTCTGTTTGGGCGTCA 61.441 55.000 0.00 0.00 0.00 4.35
976 1020 9.474920 CATAAGATGAGACTCAAACCTCTTATC 57.525 37.037 23.92 10.75 34.93 1.75
994 1038 7.230027 AGAATAGCTTTTCCCTCCATAAGATG 58.770 38.462 12.62 0.00 0.00 2.90
1023 1068 0.171903 GCACAAGCACCATAAGGCAG 59.828 55.000 0.00 0.00 41.58 4.85
1056 1101 3.453424 CGATTCCATACCGACATGAACA 58.547 45.455 0.00 0.00 0.00 3.18
1065 1110 1.567504 ACGAAAGCGATTCCATACCG 58.432 50.000 0.00 0.00 41.64 4.02
1080 1125 3.478857 AACATGTACAGGGACAACGAA 57.521 42.857 12.79 0.00 31.83 3.85
1247 1310 2.992689 TGGCAGGCCAACATGCAG 60.993 61.111 11.25 0.00 44.12 4.41
1287 1350 1.933853 CAGCCTACATGCCGAGTTTAC 59.066 52.381 0.00 0.00 0.00 2.01
1322 1385 5.536161 ACAGACCTTGCAGTAACAATTCAAT 59.464 36.000 0.00 0.00 0.00 2.57
1408 1472 5.534207 TGCATGTCACAAAGAGGATTTTT 57.466 34.783 0.00 0.00 0.00 1.94
1824 1892 8.251750 TCTAATATTCCACACGACAAAGAAAG 57.748 34.615 0.00 0.00 0.00 2.62
1855 1923 6.849085 TGAGGCCATGTAAACACAAAATAT 57.151 33.333 5.01 0.00 0.00 1.28
1868 1936 0.908910 TACGAACCATGAGGCCATGT 59.091 50.000 5.01 0.00 46.68 3.21
1880 1948 5.668558 ACTTGTTTCTGAACATACGAACC 57.331 39.130 0.00 0.00 44.71 3.62
1881 1949 7.964545 AAAACTTGTTTCTGAACATACGAAC 57.035 32.000 0.00 0.00 44.71 3.95
1882 1950 7.853929 GCTAAAACTTGTTTCTGAACATACGAA 59.146 33.333 0.00 0.00 44.71 3.85
1884 1952 7.129622 TGCTAAAACTTGTTTCTGAACATACG 58.870 34.615 0.00 0.00 44.71 3.06
1893 1965 8.299570 CCACAGATAATGCTAAAACTTGTTTCT 58.700 33.333 0.00 0.00 0.00 2.52
1899 1971 8.409358 AGTTTCCACAGATAATGCTAAAACTT 57.591 30.769 0.00 0.00 35.27 2.66
1924 1996 2.888414 TGACACACTTCTATGGACACGA 59.112 45.455 0.00 0.00 0.00 4.35
1926 1998 3.997021 CCTTGACACACTTCTATGGACAC 59.003 47.826 0.00 0.00 0.00 3.67
1945 3688 1.813513 CGCTTCTGGTTCATGTCCTT 58.186 50.000 10.06 0.00 0.00 3.36
1952 3695 0.679505 ACTACTGCGCTTCTGGTTCA 59.320 50.000 9.73 0.00 0.00 3.18
1958 3701 2.266055 GCCCACTACTGCGCTTCT 59.734 61.111 9.73 0.00 0.00 2.85
1968 3716 2.342279 GGCATATCGCGCCCACTA 59.658 61.111 0.00 0.00 44.22 2.74
1989 3737 7.867909 CACATAATCACACGTTACCTCTATCAT 59.132 37.037 0.00 0.00 0.00 2.45
1990 3738 7.200455 CACATAATCACACGTTACCTCTATCA 58.800 38.462 0.00 0.00 0.00 2.15
2045 3793 3.580895 TGCTATATAAGGCCCGATGTTCA 59.419 43.478 0.00 0.00 0.00 3.18
2065 3813 1.200020 CCATCTCCTTCAAAACGGTGC 59.800 52.381 0.00 0.00 0.00 5.01
2066 3814 2.504367 ACCATCTCCTTCAAAACGGTG 58.496 47.619 0.00 0.00 0.00 4.94
2067 3815 2.951229 ACCATCTCCTTCAAAACGGT 57.049 45.000 0.00 0.00 0.00 4.83
2068 3816 2.678336 GCTACCATCTCCTTCAAAACGG 59.322 50.000 0.00 0.00 0.00 4.44
2069 3817 3.334691 TGCTACCATCTCCTTCAAAACG 58.665 45.455 0.00 0.00 0.00 3.60
2070 3818 4.579869 TCTGCTACCATCTCCTTCAAAAC 58.420 43.478 0.00 0.00 0.00 2.43
2071 3819 4.836825 CTCTGCTACCATCTCCTTCAAAA 58.163 43.478 0.00 0.00 0.00 2.44
2072 3820 3.369892 GCTCTGCTACCATCTCCTTCAAA 60.370 47.826 0.00 0.00 0.00 2.69
2073 3821 2.169352 GCTCTGCTACCATCTCCTTCAA 59.831 50.000 0.00 0.00 0.00 2.69
2074 3822 1.759445 GCTCTGCTACCATCTCCTTCA 59.241 52.381 0.00 0.00 0.00 3.02
2075 3823 1.269517 CGCTCTGCTACCATCTCCTTC 60.270 57.143 0.00 0.00 0.00 3.46
2076 3824 0.749649 CGCTCTGCTACCATCTCCTT 59.250 55.000 0.00 0.00 0.00 3.36
2077 3825 0.106469 TCGCTCTGCTACCATCTCCT 60.106 55.000 0.00 0.00 0.00 3.69
2078 3826 0.031449 GTCGCTCTGCTACCATCTCC 59.969 60.000 0.00 0.00 0.00 3.71
2079 3827 0.741326 TGTCGCTCTGCTACCATCTC 59.259 55.000 0.00 0.00 0.00 2.75
2080 3828 1.068281 CATGTCGCTCTGCTACCATCT 59.932 52.381 0.00 0.00 0.00 2.90
2081 3829 1.067669 TCATGTCGCTCTGCTACCATC 59.932 52.381 0.00 0.00 0.00 3.51
2082 3830 1.068281 CTCATGTCGCTCTGCTACCAT 59.932 52.381 0.00 0.00 0.00 3.55
2083 3831 0.457443 CTCATGTCGCTCTGCTACCA 59.543 55.000 0.00 0.00 0.00 3.25
2084 3832 0.457851 ACTCATGTCGCTCTGCTACC 59.542 55.000 0.00 0.00 0.00 3.18
2085 3833 2.285827 AACTCATGTCGCTCTGCTAC 57.714 50.000 0.00 0.00 0.00 3.58
2086 3834 2.231235 TCAAACTCATGTCGCTCTGCTA 59.769 45.455 0.00 0.00 0.00 3.49
2087 3835 1.001293 TCAAACTCATGTCGCTCTGCT 59.999 47.619 0.00 0.00 0.00 4.24
2088 3836 1.392853 CTCAAACTCATGTCGCTCTGC 59.607 52.381 0.00 0.00 0.00 4.26
2089 3837 1.998315 CCTCAAACTCATGTCGCTCTG 59.002 52.381 0.00 0.00 0.00 3.35
2090 3838 1.895798 TCCTCAAACTCATGTCGCTCT 59.104 47.619 0.00 0.00 0.00 4.09
2091 3839 2.370281 TCCTCAAACTCATGTCGCTC 57.630 50.000 0.00 0.00 0.00 5.03
2092 3840 2.037772 ACTTCCTCAAACTCATGTCGCT 59.962 45.455 0.00 0.00 0.00 4.93
2093 3841 2.413453 GACTTCCTCAAACTCATGTCGC 59.587 50.000 0.00 0.00 0.00 5.19
2094 3842 2.663602 CGACTTCCTCAAACTCATGTCG 59.336 50.000 0.00 0.00 39.61 4.35
2095 3843 2.996621 CCGACTTCCTCAAACTCATGTC 59.003 50.000 0.00 0.00 0.00 3.06
2096 3844 2.368875 ACCGACTTCCTCAAACTCATGT 59.631 45.455 0.00 0.00 0.00 3.21
2097 3845 3.045601 ACCGACTTCCTCAAACTCATG 57.954 47.619 0.00 0.00 0.00 3.07
2098 3846 3.557264 GGAACCGACTTCCTCAAACTCAT 60.557 47.826 4.93 0.00 44.90 2.90
2099 3847 2.224209 GGAACCGACTTCCTCAAACTCA 60.224 50.000 4.93 0.00 44.90 3.41
2100 3848 2.414806 GGAACCGACTTCCTCAAACTC 58.585 52.381 4.93 0.00 44.90 3.01
2101 3849 2.545537 GGAACCGACTTCCTCAAACT 57.454 50.000 4.93 0.00 44.90 2.66
2116 3864 1.909700 TCATGCTTGGAGGTTGGAAC 58.090 50.000 0.00 0.00 0.00 3.62
2117 3865 2.673775 TTCATGCTTGGAGGTTGGAA 57.326 45.000 0.00 0.00 0.00 3.53
2118 3866 2.041485 TCATTCATGCTTGGAGGTTGGA 59.959 45.455 0.00 0.00 0.00 3.53
2119 3867 2.165030 GTCATTCATGCTTGGAGGTTGG 59.835 50.000 0.00 0.00 0.00 3.77
2120 3868 2.159476 CGTCATTCATGCTTGGAGGTTG 60.159 50.000 0.00 0.00 0.00 3.77
2121 3869 2.086869 CGTCATTCATGCTTGGAGGTT 58.913 47.619 0.00 0.00 0.00 3.50
2122 3870 1.679944 CCGTCATTCATGCTTGGAGGT 60.680 52.381 0.00 0.00 0.00 3.85
2123 3871 1.019673 CCGTCATTCATGCTTGGAGG 58.980 55.000 0.00 0.00 0.00 4.30
2124 3872 0.379669 GCCGTCATTCATGCTTGGAG 59.620 55.000 0.00 0.00 0.00 3.86
2125 3873 1.031571 GGCCGTCATTCATGCTTGGA 61.032 55.000 0.00 0.00 0.00 3.53
2126 3874 1.314534 TGGCCGTCATTCATGCTTGG 61.315 55.000 0.00 0.00 0.00 3.61
2127 3875 0.527113 TTGGCCGTCATTCATGCTTG 59.473 50.000 0.00 0.00 0.00 4.01
2128 3876 1.067635 GTTTGGCCGTCATTCATGCTT 60.068 47.619 0.00 0.00 0.00 3.91
2129 3877 0.527565 GTTTGGCCGTCATTCATGCT 59.472 50.000 0.00 0.00 0.00 3.79
2130 3878 0.527565 AGTTTGGCCGTCATTCATGC 59.472 50.000 0.00 0.00 0.00 4.06
2131 3879 2.228582 TCAAGTTTGGCCGTCATTCATG 59.771 45.455 0.00 0.00 0.00 3.07
2132 3880 2.513753 TCAAGTTTGGCCGTCATTCAT 58.486 42.857 0.00 0.00 0.00 2.57
2133 3881 1.974265 TCAAGTTTGGCCGTCATTCA 58.026 45.000 0.00 0.00 0.00 2.57
2134 3882 3.575965 AATCAAGTTTGGCCGTCATTC 57.424 42.857 0.00 0.00 0.00 2.67
2135 3883 3.823873 TGTAATCAAGTTTGGCCGTCATT 59.176 39.130 0.00 0.00 0.00 2.57
2136 3884 3.417101 TGTAATCAAGTTTGGCCGTCAT 58.583 40.909 0.00 0.00 0.00 3.06
2137 3885 2.852449 TGTAATCAAGTTTGGCCGTCA 58.148 42.857 0.00 0.00 0.00 4.35
2138 3886 3.907894 TTGTAATCAAGTTTGGCCGTC 57.092 42.857 0.00 0.00 0.00 4.79
2139 3887 4.864704 ATTTGTAATCAAGTTTGGCCGT 57.135 36.364 0.00 0.00 34.88 5.68
2140 3888 6.201806 TGAAAATTTGTAATCAAGTTTGGCCG 59.798 34.615 0.00 0.00 40.70 6.13
2141 3889 7.226523 ACTGAAAATTTGTAATCAAGTTTGGCC 59.773 33.333 0.00 0.00 40.70 5.36
2142 3890 8.141835 ACTGAAAATTTGTAATCAAGTTTGGC 57.858 30.769 0.00 0.00 40.70 4.52
2177 3925 8.252417 CACCTTGTTAATTGGATTGATCAATCA 58.748 33.333 36.93 24.48 46.77 2.57
2178 3926 8.469200 TCACCTTGTTAATTGGATTGATCAATC 58.531 33.333 31.88 31.88 44.82 2.67
2179 3927 8.365060 TCACCTTGTTAATTGGATTGATCAAT 57.635 30.769 20.85 20.85 36.50 2.57
2180 3928 7.773489 TCACCTTGTTAATTGGATTGATCAA 57.227 32.000 11.26 11.26 0.00 2.57
2181 3929 7.396907 ACATCACCTTGTTAATTGGATTGATCA 59.603 33.333 0.00 0.00 0.00 2.92
2182 3930 7.703621 CACATCACCTTGTTAATTGGATTGATC 59.296 37.037 0.00 0.00 0.00 2.92
2183 3931 7.178983 ACACATCACCTTGTTAATTGGATTGAT 59.821 33.333 0.00 0.00 0.00 2.57
2184 3932 6.493115 ACACATCACCTTGTTAATTGGATTGA 59.507 34.615 0.00 0.00 0.00 2.57
2185 3933 6.690530 ACACATCACCTTGTTAATTGGATTG 58.309 36.000 0.00 0.00 0.00 2.67
2186 3934 6.916360 ACACATCACCTTGTTAATTGGATT 57.084 33.333 0.00 0.00 0.00 3.01
2187 3935 6.916360 AACACATCACCTTGTTAATTGGAT 57.084 33.333 0.00 0.00 34.12 3.41
2188 3936 8.952278 GTATAACACATCACCTTGTTAATTGGA 58.048 33.333 0.00 0.00 40.62 3.53
2189 3937 8.735315 TGTATAACACATCACCTTGTTAATTGG 58.265 33.333 0.00 0.00 40.62 3.16
2193 3941 9.386010 GGTATGTATAACACATCACCTTGTTAA 57.614 33.333 0.00 0.00 44.99 2.01
2194 3942 7.707464 CGGTATGTATAACACATCACCTTGTTA 59.293 37.037 0.00 0.00 44.99 2.41
2195 3943 6.537301 CGGTATGTATAACACATCACCTTGTT 59.463 38.462 0.00 0.00 44.99 2.83
2196 3944 6.046593 CGGTATGTATAACACATCACCTTGT 58.953 40.000 0.00 0.00 44.99 3.16
2197 3945 6.046593 ACGGTATGTATAACACATCACCTTG 58.953 40.000 0.00 0.00 44.99 3.61
2198 3946 6.229936 ACGGTATGTATAACACATCACCTT 57.770 37.500 0.00 0.00 44.99 3.50
2199 3947 5.506815 CGACGGTATGTATAACACATCACCT 60.507 44.000 0.00 0.00 44.99 4.00
2200 3948 4.678287 CGACGGTATGTATAACACATCACC 59.322 45.833 0.00 0.94 44.99 4.02
2201 3949 5.513376 TCGACGGTATGTATAACACATCAC 58.487 41.667 0.00 0.00 44.99 3.06
2202 3950 5.754543 TCGACGGTATGTATAACACATCA 57.245 39.130 0.00 0.00 44.99 3.07
2203 3951 5.798934 GGATCGACGGTATGTATAACACATC 59.201 44.000 0.00 0.00 44.99 3.06
2205 3953 4.579753 TGGATCGACGGTATGTATAACACA 59.420 41.667 0.00 0.00 42.69 3.72
2206 3954 5.112220 TGGATCGACGGTATGTATAACAC 57.888 43.478 0.00 0.00 0.00 3.32
2207 3955 5.771153 TTGGATCGACGGTATGTATAACA 57.229 39.130 0.00 0.00 0.00 2.41
2208 3956 7.383029 TCAATTTGGATCGACGGTATGTATAAC 59.617 37.037 0.00 0.00 0.00 1.89
2209 3957 7.435305 TCAATTTGGATCGACGGTATGTATAA 58.565 34.615 0.00 0.00 0.00 0.98
2210 3958 6.983984 TCAATTTGGATCGACGGTATGTATA 58.016 36.000 0.00 0.00 0.00 1.47
2211 3959 5.849510 TCAATTTGGATCGACGGTATGTAT 58.150 37.500 0.00 0.00 0.00 2.29
2212 3960 5.265350 TCAATTTGGATCGACGGTATGTA 57.735 39.130 0.00 0.00 0.00 2.29
2213 3961 4.131649 TCAATTTGGATCGACGGTATGT 57.868 40.909 0.00 0.00 0.00 2.29
2214 3962 4.570772 AGTTCAATTTGGATCGACGGTATG 59.429 41.667 0.00 0.00 0.00 2.39
2215 3963 4.766375 AGTTCAATTTGGATCGACGGTAT 58.234 39.130 0.00 0.00 0.00 2.73
2216 3964 4.196626 AGTTCAATTTGGATCGACGGTA 57.803 40.909 0.00 0.00 0.00 4.02
2217 3965 3.053831 AGTTCAATTTGGATCGACGGT 57.946 42.857 0.00 0.00 0.00 4.83
2218 3966 3.930229 TGTAGTTCAATTTGGATCGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2219 3967 5.120208 ACTTGTAGTTCAATTTGGATCGACG 59.880 40.000 0.00 0.00 35.35 5.12
2220 3968 6.481954 ACTTGTAGTTCAATTTGGATCGAC 57.518 37.500 0.00 0.00 35.35 4.20
2221 3969 7.608153 TCTACTTGTAGTTCAATTTGGATCGA 58.392 34.615 7.56 0.00 35.35 3.59
2222 3970 7.827819 TCTACTTGTAGTTCAATTTGGATCG 57.172 36.000 7.56 0.00 35.35 3.69
2223 3971 8.169268 CGTTCTACTTGTAGTTCAATTTGGATC 58.831 37.037 7.56 0.00 35.35 3.36
2224 3972 7.119262 CCGTTCTACTTGTAGTTCAATTTGGAT 59.881 37.037 7.56 0.00 35.35 3.41
2225 3973 6.425721 CCGTTCTACTTGTAGTTCAATTTGGA 59.574 38.462 7.56 0.00 35.35 3.53
2226 3974 6.204108 ACCGTTCTACTTGTAGTTCAATTTGG 59.796 38.462 7.56 3.61 35.35 3.28
2227 3975 7.042321 TCACCGTTCTACTTGTAGTTCAATTTG 60.042 37.037 7.56 0.00 35.35 2.32
2228 3976 6.987992 TCACCGTTCTACTTGTAGTTCAATTT 59.012 34.615 7.56 0.00 35.35 1.82
2229 3977 6.518493 TCACCGTTCTACTTGTAGTTCAATT 58.482 36.000 7.56 0.00 35.35 2.32
2230 3978 6.092955 TCACCGTTCTACTTGTAGTTCAAT 57.907 37.500 7.56 0.00 35.35 2.57
2231 3979 5.518848 TCACCGTTCTACTTGTAGTTCAA 57.481 39.130 7.56 0.00 34.61 2.69
2232 3980 5.068198 AGTTCACCGTTCTACTTGTAGTTCA 59.932 40.000 7.56 0.00 0.00 3.18
2233 3981 5.527033 AGTTCACCGTTCTACTTGTAGTTC 58.473 41.667 7.56 2.59 0.00 3.01
2234 3982 5.526506 AGTTCACCGTTCTACTTGTAGTT 57.473 39.130 7.56 0.00 0.00 2.24
2235 3983 5.767168 ACTAGTTCACCGTTCTACTTGTAGT 59.233 40.000 7.56 0.00 0.00 2.73
2236 3984 6.251655 ACTAGTTCACCGTTCTACTTGTAG 57.748 41.667 1.61 1.61 0.00 2.74
2237 3985 6.372659 CCTACTAGTTCACCGTTCTACTTGTA 59.627 42.308 0.00 0.00 31.11 2.41
2238 3986 5.182760 CCTACTAGTTCACCGTTCTACTTGT 59.817 44.000 0.00 0.00 32.77 3.16
2239 3987 5.413833 TCCTACTAGTTCACCGTTCTACTTG 59.586 44.000 0.00 0.00 0.00 3.16
2240 3988 5.564550 TCCTACTAGTTCACCGTTCTACTT 58.435 41.667 0.00 0.00 0.00 2.24
2241 3989 5.171339 TCCTACTAGTTCACCGTTCTACT 57.829 43.478 0.00 0.00 0.00 2.57
2242 3990 5.886960 TTCCTACTAGTTCACCGTTCTAC 57.113 43.478 0.00 0.00 0.00 2.59
2243 3991 8.579850 TTAATTCCTACTAGTTCACCGTTCTA 57.420 34.615 0.00 0.00 0.00 2.10
2244 3992 5.997384 AATTCCTACTAGTTCACCGTTCT 57.003 39.130 0.00 0.00 0.00 3.01
2245 3993 8.601476 CAATTAATTCCTACTAGTTCACCGTTC 58.399 37.037 0.00 0.00 0.00 3.95
2246 3994 7.065443 GCAATTAATTCCTACTAGTTCACCGTT 59.935 37.037 0.00 0.00 0.00 4.44
2247 3995 6.537660 GCAATTAATTCCTACTAGTTCACCGT 59.462 38.462 0.00 0.00 0.00 4.83
2248 3996 6.537301 TGCAATTAATTCCTACTAGTTCACCG 59.463 38.462 0.00 0.00 0.00 4.94
2249 3997 7.553044 ACTGCAATTAATTCCTACTAGTTCACC 59.447 37.037 0.00 0.00 0.00 4.02
2250 3998 8.494016 ACTGCAATTAATTCCTACTAGTTCAC 57.506 34.615 0.00 0.00 0.00 3.18
2266 4014 8.717821 GCCATTCGAGTTAATATACTGCAATTA 58.282 33.333 0.00 0.00 0.00 1.40
2267 4015 7.308589 GGCCATTCGAGTTAATATACTGCAATT 60.309 37.037 0.00 0.00 0.00 2.32
2268 4016 6.149474 GGCCATTCGAGTTAATATACTGCAAT 59.851 38.462 0.00 0.00 0.00 3.56
2269 4017 5.468746 GGCCATTCGAGTTAATATACTGCAA 59.531 40.000 0.00 0.00 0.00 4.08
2270 4018 4.994852 GGCCATTCGAGTTAATATACTGCA 59.005 41.667 0.00 0.00 0.00 4.41
2271 4019 4.091509 CGGCCATTCGAGTTAATATACTGC 59.908 45.833 2.24 0.00 0.00 4.40
2272 4020 5.118664 CACGGCCATTCGAGTTAATATACTG 59.881 44.000 2.24 0.00 0.00 2.74
2273 4021 5.010314 TCACGGCCATTCGAGTTAATATACT 59.990 40.000 2.24 0.00 0.00 2.12
2274 4022 5.224888 TCACGGCCATTCGAGTTAATATAC 58.775 41.667 2.24 0.00 0.00 1.47
2275 4023 5.456548 TCACGGCCATTCGAGTTAATATA 57.543 39.130 2.24 0.00 0.00 0.86
2276 4024 4.330944 TCACGGCCATTCGAGTTAATAT 57.669 40.909 2.24 0.00 0.00 1.28
2277 4025 3.804786 TCACGGCCATTCGAGTTAATA 57.195 42.857 2.24 0.00 0.00 0.98
2278 4026 2.684001 TCACGGCCATTCGAGTTAAT 57.316 45.000 2.24 0.00 0.00 1.40
2279 4027 2.343101 CTTCACGGCCATTCGAGTTAA 58.657 47.619 2.24 0.00 0.00 2.01
2280 4028 2.004583 CTTCACGGCCATTCGAGTTA 57.995 50.000 2.24 0.00 0.00 2.24
2281 4029 1.298859 GCTTCACGGCCATTCGAGTT 61.299 55.000 2.24 0.00 0.00 3.01
2282 4030 1.741770 GCTTCACGGCCATTCGAGT 60.742 57.895 2.24 0.00 0.00 4.18
2283 4031 1.699656 CTGCTTCACGGCCATTCGAG 61.700 60.000 2.24 0.00 0.00 4.04
2284 4032 1.741401 CTGCTTCACGGCCATTCGA 60.741 57.895 2.24 0.00 0.00 3.71
2285 4033 2.787249 CTGCTTCACGGCCATTCG 59.213 61.111 2.24 0.00 0.00 3.34
2286 4034 2.486966 GCTGCTTCACGGCCATTC 59.513 61.111 2.24 0.00 45.68 2.67
2294 4042 1.582502 GATACGTACGTGCTGCTTCAC 59.417 52.381 30.25 7.34 0.00 3.18
2295 4043 1.792632 CGATACGTACGTGCTGCTTCA 60.793 52.381 30.25 8.49 0.00 3.02
2296 4044 0.838229 CGATACGTACGTGCTGCTTC 59.162 55.000 30.25 14.92 0.00 3.86
2297 4045 0.169672 ACGATACGTACGTGCTGCTT 59.830 50.000 30.25 8.17 42.37 3.91
2298 4046 0.169672 AACGATACGTACGTGCTGCT 59.830 50.000 30.25 9.54 43.16 4.24
2299 4047 0.564767 GAACGATACGTACGTGCTGC 59.435 55.000 30.25 14.87 43.16 5.25
2300 4048 0.829571 CGAACGATACGTACGTGCTG 59.170 55.000 30.25 20.10 43.16 4.41
2301 4049 0.247814 CCGAACGATACGTACGTGCT 60.248 55.000 30.25 17.37 43.16 4.40
2302 4050 0.247655 TCCGAACGATACGTACGTGC 60.248 55.000 30.25 19.95 43.16 5.34
2303 4051 2.031941 CATCCGAACGATACGTACGTG 58.968 52.381 30.25 16.37 43.16 4.49
2304 4052 1.003545 CCATCCGAACGATACGTACGT 60.004 52.381 25.98 25.98 45.89 3.57
2305 4053 1.261354 TCCATCCGAACGATACGTACG 59.739 52.381 15.01 15.01 39.99 3.67
2306 4054 2.545526 TCTCCATCCGAACGATACGTAC 59.454 50.000 0.00 0.00 39.99 3.67
2307 4055 2.837498 TCTCCATCCGAACGATACGTA 58.163 47.619 0.00 0.00 39.99 3.57
2308 4056 1.671979 TCTCCATCCGAACGATACGT 58.328 50.000 0.00 0.00 43.97 3.57
2309 4057 2.768833 TTCTCCATCCGAACGATACG 57.231 50.000 0.00 0.00 0.00 3.06
2310 4058 4.238761 TCATTCTCCATCCGAACGATAC 57.761 45.455 0.00 0.00 0.00 2.24
2311 4059 4.929819 TTCATTCTCCATCCGAACGATA 57.070 40.909 0.00 0.00 0.00 2.92
2312 4060 3.819564 TTCATTCTCCATCCGAACGAT 57.180 42.857 0.00 0.00 0.00 3.73
2313 4061 3.603158 TTTCATTCTCCATCCGAACGA 57.397 42.857 0.00 0.00 0.00 3.85
2314 4062 5.984233 TTATTTCATTCTCCATCCGAACG 57.016 39.130 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.