Multiple sequence alignment - TraesCS3B01G593900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G593900 chr3B 100.000 7052 0 0 1 7052 817407885 817414936 0.000000e+00 13023.0
1 TraesCS3B01G593900 chr3B 95.686 510 22 0 1 510 775533496 775534005 0.000000e+00 821.0
2 TraesCS3B01G593900 chr3B 94.716 511 27 0 1 511 32771448 32771958 0.000000e+00 795.0
3 TraesCS3B01G593900 chr3B 94.499 509 28 0 2 510 761653020 761652512 0.000000e+00 785.0
4 TraesCS3B01G593900 chr3B 93.922 510 31 0 1 510 42354431 42354940 0.000000e+00 771.0
5 TraesCS3B01G593900 chr3D 97.802 5597 112 6 1457 7052 607869310 607874896 0.000000e+00 9644.0
6 TraesCS3B01G593900 chr3D 86.937 666 39 20 710 1339 607868657 607869310 0.000000e+00 704.0
7 TraesCS3B01G593900 chr3D 91.083 157 13 1 524 679 113184252 113184096 1.990000e-50 211.0
8 TraesCS3B01G593900 chr3D 87.234 141 12 6 1327 1463 536894969 536894831 9.470000e-34 156.0
9 TraesCS3B01G593900 chr6D 88.198 1415 134 17 2172 3558 22103706 22105115 0.000000e+00 1657.0
10 TraesCS3B01G593900 chr6D 88.586 771 74 7 4157 4924 22106447 22107206 0.000000e+00 924.0
11 TraesCS3B01G593900 chr6D 86.897 290 35 3 1020 1306 22103226 22103515 8.820000e-84 322.0
12 TraesCS3B01G593900 chr6D 89.051 137 8 6 1338 1470 383748469 383748336 5.660000e-36 163.0
13 TraesCS3B01G593900 chr6D 87.857 140 11 5 1336 1471 323694263 323694400 7.320000e-35 159.0
14 TraesCS3B01G593900 chr7B 94.912 511 24 2 1 510 586929149 586929658 0.000000e+00 798.0
15 TraesCS3B01G593900 chr7B 93.957 513 31 0 1 513 673417774 673417262 0.000000e+00 776.0
16 TraesCS3B01G593900 chr7B 91.228 171 13 2 511 679 624798104 624797934 1.530000e-56 231.0
17 TraesCS3B01G593900 chr6B 94.521 511 28 0 1 511 14248899 14249409 0.000000e+00 789.0
18 TraesCS3B01G593900 chr6B 94.314 510 29 0 1 510 712602957 712603466 0.000000e+00 782.0
19 TraesCS3B01G593900 chr6B 86.737 475 61 2 4599 5072 3832164 3831691 1.740000e-145 527.0
20 TraesCS3B01G593900 chr6B 86.737 475 60 3 4599 5072 4381929 4382401 6.270000e-145 525.0
21 TraesCS3B01G593900 chr6B 87.353 340 41 2 4640 4978 3793308 3792970 8.580000e-104 388.0
22 TraesCS3B01G593900 chr6B 90.683 161 13 2 520 679 491650119 491650278 5.540000e-51 213.0
23 TraesCS3B01G593900 chr6B 89.412 170 13 5 514 679 715972884 715972716 7.170000e-50 209.0
24 TraesCS3B01G593900 chr6B 85.567 97 14 0 4976 5072 3788779 3788683 1.250000e-17 102.0
25 TraesCS3B01G593900 chr1B 94.291 508 29 0 1 508 136159522 136160029 0.000000e+00 778.0
26 TraesCS3B01G593900 chr1B 74.905 1056 223 33 2232 3269 678760175 678759144 1.810000e-120 444.0
27 TraesCS3B01G593900 chr1B 74.815 270 57 9 6331 6595 678439381 678439118 2.080000e-20 111.0
28 TraesCS3B01G593900 chr1B 73.626 273 57 13 6331 6595 678755646 678755381 2.710000e-14 91.6
29 TraesCS3B01G593900 chrUn 86.402 478 62 3 4599 5075 255510992 255510517 2.920000e-143 520.0
30 TraesCS3B01G593900 chrUn 86.402 478 62 3 4599 5075 355436183 355435708 2.920000e-143 520.0
31 TraesCS3B01G593900 chrUn 86.192 478 63 3 4599 5075 217770788 217770313 1.360000e-141 514.0
32 TraesCS3B01G593900 chrUn 88.889 135 12 3 1336 1468 396963003 396963136 5.660000e-36 163.0
33 TraesCS3B01G593900 chr1A 74.837 1228 259 35 2195 3402 584754899 584756096 1.750000e-140 510.0
34 TraesCS3B01G593900 chr1D 74.690 1209 243 43 2196 3377 487314967 487316139 4.950000e-131 479.0
35 TraesCS3B01G593900 chr1D 90.698 172 14 2 511 680 12824720 12824549 1.980000e-55 228.0
36 TraesCS3B01G593900 chr1D 87.234 141 15 3 1328 1466 194139764 194139903 2.630000e-34 158.0
37 TraesCS3B01G593900 chr5D 72.183 1003 221 46 2408 3384 4052254 4051284 3.260000e-63 254.0
38 TraesCS3B01G593900 chr5D 71.233 949 230 38 2448 3377 528763056 528763980 4.310000e-47 200.0
39 TraesCS3B01G593900 chr4D 89.773 176 13 5 511 683 72383905 72384078 3.310000e-53 220.0
40 TraesCS3B01G593900 chr2D 89.535 172 14 4 511 679 310441171 310441341 1.540000e-51 215.0
41 TraesCS3B01G593900 chr7A 90.244 164 14 2 512 673 38912205 38912368 5.540000e-51 213.0
42 TraesCS3B01G593900 chr7A 74.043 470 104 17 2808 3269 35664304 35663845 7.270000e-40 176.0
43 TraesCS3B01G593900 chr7A 85.906 149 13 7 1336 1480 726611666 726611522 1.230000e-32 152.0
44 TraesCS3B01G593900 chr2B 88.827 179 13 6 511 685 500943525 500943700 5.540000e-51 213.0
45 TraesCS3B01G593900 chr5B 71.798 890 193 39 2495 3364 6882610 6881759 4.310000e-47 200.0
46 TraesCS3B01G593900 chr5B 89.844 128 10 3 1336 1461 340715833 340715707 2.040000e-35 161.0
47 TraesCS3B01G593900 chr5B 87.681 138 13 4 1336 1470 640272866 640272730 2.630000e-34 158.0
48 TraesCS3B01G593900 chr5B 75.269 372 67 16 2902 3269 64632382 64632032 3.410000e-33 154.0
49 TraesCS3B01G593900 chr3A 89.922 129 10 3 1336 1462 159530330 159530457 5.660000e-36 163.0
50 TraesCS3B01G593900 chr4A 72.746 488 105 16 2902 3384 17894317 17893853 9.540000e-29 139.0
51 TraesCS3B01G593900 chr4B 70.565 744 168 36 2549 3269 662003114 662003829 5.780000e-21 113.0
52 TraesCS3B01G593900 chr4B 78.986 138 25 4 1121 1256 662002008 662002143 2.710000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G593900 chr3B 817407885 817414936 7051 False 13023.000000 13023 100.000000 1 7052 1 chr3B.!!$F4 7051
1 TraesCS3B01G593900 chr3B 775533496 775534005 509 False 821.000000 821 95.686000 1 510 1 chr3B.!!$F3 509
2 TraesCS3B01G593900 chr3B 32771448 32771958 510 False 795.000000 795 94.716000 1 511 1 chr3B.!!$F1 510
3 TraesCS3B01G593900 chr3B 761652512 761653020 508 True 785.000000 785 94.499000 2 510 1 chr3B.!!$R1 508
4 TraesCS3B01G593900 chr3B 42354431 42354940 509 False 771.000000 771 93.922000 1 510 1 chr3B.!!$F2 509
5 TraesCS3B01G593900 chr3D 607868657 607874896 6239 False 5174.000000 9644 92.369500 710 7052 2 chr3D.!!$F1 6342
6 TraesCS3B01G593900 chr6D 22103226 22107206 3980 False 967.666667 1657 87.893667 1020 4924 3 chr6D.!!$F2 3904
7 TraesCS3B01G593900 chr7B 586929149 586929658 509 False 798.000000 798 94.912000 1 510 1 chr7B.!!$F1 509
8 TraesCS3B01G593900 chr7B 673417262 673417774 512 True 776.000000 776 93.957000 1 513 1 chr7B.!!$R2 512
9 TraesCS3B01G593900 chr6B 14248899 14249409 510 False 789.000000 789 94.521000 1 511 1 chr6B.!!$F2 510
10 TraesCS3B01G593900 chr6B 712602957 712603466 509 False 782.000000 782 94.314000 1 510 1 chr6B.!!$F4 509
11 TraesCS3B01G593900 chr1B 136159522 136160029 507 False 778.000000 778 94.291000 1 508 1 chr1B.!!$F1 507
12 TraesCS3B01G593900 chr1B 678755381 678760175 4794 True 267.800000 444 74.265500 2232 6595 2 chr1B.!!$R2 4363
13 TraesCS3B01G593900 chr1A 584754899 584756096 1197 False 510.000000 510 74.837000 2195 3402 1 chr1A.!!$F1 1207
14 TraesCS3B01G593900 chr1D 487314967 487316139 1172 False 479.000000 479 74.690000 2196 3377 1 chr1D.!!$F2 1181
15 TraesCS3B01G593900 chr5D 4051284 4052254 970 True 254.000000 254 72.183000 2408 3384 1 chr5D.!!$R1 976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 639 0.037590 ATACGTGCACCAACACCCAT 59.962 50.000 12.15 0.00 37.25 4.00 F
987 1014 0.039911 AGACTGACGCCCTCTTAGGT 59.960 55.000 0.00 0.00 31.93 3.08 F
1923 1958 0.402121 GGAGATGACCCCCTATTGGC 59.598 60.000 0.00 0.00 0.00 4.52 F
1928 1963 0.548926 TGACCCCCTATTGGCTGTCA 60.549 55.000 10.45 10.45 38.86 3.58 F
2013 2048 2.093711 ACCATTCGCTGCACACTGTATA 60.094 45.455 0.00 0.00 0.00 1.47 F
3592 3672 1.609208 ACCACACATCCAAGCTCAAC 58.391 50.000 0.00 0.00 0.00 3.18 F
4414 5987 1.545759 TGAAATTCTCGTCGCTAGCG 58.454 50.000 30.91 30.91 41.35 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2026 0.034756 ACAGTGTGCAGCGAATGGTA 59.965 50.000 0.00 0.00 0.00 3.25 R
1992 2027 0.034756 TACAGTGTGCAGCGAATGGT 59.965 50.000 5.88 0.00 0.00 3.55 R
3572 3652 2.105649 TGTTGAGCTTGGATGTGTGGTA 59.894 45.455 0.00 0.00 0.00 3.25 R
3592 3672 6.755141 CCAAGATAATCAGGAATGTGCTTTTG 59.245 38.462 0.00 0.00 0.00 2.44 R
3930 4591 1.185315 AACTTTGGCTTGTGCACAGT 58.815 45.000 20.59 9.74 41.91 3.55 R
4470 6043 0.036388 TGGGTGACTCCAATCGCTTC 60.036 55.000 0.00 0.00 38.11 3.86 R
6207 7871 0.464013 CAGAGAGATGGCCAAGCAGG 60.464 60.000 10.96 0.00 41.84 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.372004 CGTGACGGACCGCTAAACA 60.372 57.895 15.39 4.06 0.00 2.83
31 32 1.922545 GTGACGGACCGCTAAACATAC 59.077 52.381 15.39 0.00 0.00 2.39
56 57 6.976925 CACAAATATTGAGGAAAATGGAGCTC 59.023 38.462 4.71 4.71 0.00 4.09
103 104 1.490693 CTCGGGCATTCCATCGAACG 61.491 60.000 0.00 0.00 34.36 3.95
126 127 2.433604 CTCATGTGCATAGGAGGTGAGT 59.566 50.000 16.36 0.00 0.00 3.41
340 341 1.739608 ATTGGCCCTGGTTTGTCCCT 61.740 55.000 0.00 0.00 34.77 4.20
346 347 0.478507 CCTGGTTTGTCCCTCCAACT 59.521 55.000 0.00 0.00 34.77 3.16
369 370 2.779506 GACCAAAAGGTCCAGACGAAT 58.220 47.619 3.27 0.00 33.21 3.34
494 495 3.267233 TGGCCTGGACCATTGCCT 61.267 61.111 26.85 0.00 44.32 4.75
513 514 4.174762 GCCTCCTTTTCTACTAGTGTTCG 58.825 47.826 5.39 0.00 0.00 3.95
514 515 4.082354 GCCTCCTTTTCTACTAGTGTTCGA 60.082 45.833 5.39 0.00 0.00 3.71
515 516 5.400703 CCTCCTTTTCTACTAGTGTTCGAC 58.599 45.833 5.39 0.00 0.00 4.20
516 517 5.183522 CCTCCTTTTCTACTAGTGTTCGACT 59.816 44.000 5.39 0.00 38.88 4.18
517 518 6.010294 TCCTTTTCTACTAGTGTTCGACTG 57.990 41.667 5.39 0.00 35.96 3.51
518 519 4.621886 CCTTTTCTACTAGTGTTCGACTGC 59.378 45.833 5.39 0.00 35.96 4.40
519 520 3.466712 TTCTACTAGTGTTCGACTGCG 57.533 47.619 5.39 0.00 35.96 5.18
520 521 1.736126 TCTACTAGTGTTCGACTGCGG 59.264 52.381 5.39 0.00 35.96 5.69
521 522 0.806868 TACTAGTGTTCGACTGCGGG 59.193 55.000 5.39 0.00 35.96 6.13
522 523 1.153823 CTAGTGTTCGACTGCGGGG 60.154 63.158 0.00 0.00 35.96 5.73
523 524 2.558554 CTAGTGTTCGACTGCGGGGG 62.559 65.000 0.00 0.00 35.96 5.40
524 525 4.309950 GTGTTCGACTGCGGGGGT 62.310 66.667 0.00 0.00 38.28 4.95
525 526 4.308458 TGTTCGACTGCGGGGGTG 62.308 66.667 0.00 0.00 38.28 4.61
526 527 4.309950 GTTCGACTGCGGGGGTGT 62.310 66.667 0.00 0.00 38.28 4.16
527 528 3.552384 TTCGACTGCGGGGGTGTT 61.552 61.111 0.00 0.00 38.28 3.32
528 529 3.818121 TTCGACTGCGGGGGTGTTG 62.818 63.158 0.00 0.00 38.28 3.33
529 530 4.308458 CGACTGCGGGGGTGTTGA 62.308 66.667 0.00 0.00 0.00 3.18
530 531 2.358737 GACTGCGGGGGTGTTGAG 60.359 66.667 0.00 0.00 0.00 3.02
531 532 3.168528 ACTGCGGGGGTGTTGAGT 61.169 61.111 0.00 0.00 0.00 3.41
532 533 1.823169 GACTGCGGGGGTGTTGAGTA 61.823 60.000 0.00 0.00 0.00 2.59
533 534 1.198759 ACTGCGGGGGTGTTGAGTAT 61.199 55.000 0.00 0.00 0.00 2.12
534 535 0.744414 CTGCGGGGGTGTTGAGTATG 60.744 60.000 0.00 0.00 0.00 2.39
535 536 1.298667 GCGGGGGTGTTGAGTATGT 59.701 57.895 0.00 0.00 0.00 2.29
536 537 0.538118 GCGGGGGTGTTGAGTATGTA 59.462 55.000 0.00 0.00 0.00 2.29
537 538 1.140252 GCGGGGGTGTTGAGTATGTAT 59.860 52.381 0.00 0.00 0.00 2.29
538 539 2.420967 GCGGGGGTGTTGAGTATGTATT 60.421 50.000 0.00 0.00 0.00 1.89
539 540 3.881220 CGGGGGTGTTGAGTATGTATTT 58.119 45.455 0.00 0.00 0.00 1.40
540 541 4.266714 CGGGGGTGTTGAGTATGTATTTT 58.733 43.478 0.00 0.00 0.00 1.82
541 542 4.095782 CGGGGGTGTTGAGTATGTATTTTG 59.904 45.833 0.00 0.00 0.00 2.44
542 543 5.014202 GGGGGTGTTGAGTATGTATTTTGT 58.986 41.667 0.00 0.00 0.00 2.83
543 544 5.105917 GGGGGTGTTGAGTATGTATTTTGTG 60.106 44.000 0.00 0.00 0.00 3.33
544 545 5.475564 GGGGTGTTGAGTATGTATTTTGTGT 59.524 40.000 0.00 0.00 0.00 3.72
545 546 6.015772 GGGGTGTTGAGTATGTATTTTGTGTT 60.016 38.462 0.00 0.00 0.00 3.32
546 547 6.861055 GGGTGTTGAGTATGTATTTTGTGTTG 59.139 38.462 0.00 0.00 0.00 3.33
547 548 6.362283 GGTGTTGAGTATGTATTTTGTGTTGC 59.638 38.462 0.00 0.00 0.00 4.17
548 549 6.915300 GTGTTGAGTATGTATTTTGTGTTGCA 59.085 34.615 0.00 0.00 0.00 4.08
549 550 7.594758 GTGTTGAGTATGTATTTTGTGTTGCAT 59.405 33.333 0.00 0.00 0.00 3.96
550 551 7.594386 TGTTGAGTATGTATTTTGTGTTGCATG 59.406 33.333 0.00 0.00 0.00 4.06
551 552 7.213216 TGAGTATGTATTTTGTGTTGCATGT 57.787 32.000 0.00 0.00 0.00 3.21
552 553 8.329203 TGAGTATGTATTTTGTGTTGCATGTA 57.671 30.769 0.00 0.00 0.00 2.29
553 554 8.955388 TGAGTATGTATTTTGTGTTGCATGTAT 58.045 29.630 0.00 0.00 0.00 2.29
558 559 8.923609 TGTATTTTGTGTTGCATGTATATTGG 57.076 30.769 0.00 0.00 0.00 3.16
559 560 8.743714 TGTATTTTGTGTTGCATGTATATTGGA 58.256 29.630 0.00 0.00 0.00 3.53
560 561 9.236691 GTATTTTGTGTTGCATGTATATTGGAG 57.763 33.333 0.00 0.00 0.00 3.86
561 562 6.832520 TTTGTGTTGCATGTATATTGGAGT 57.167 33.333 0.00 0.00 0.00 3.85
562 563 6.832520 TTGTGTTGCATGTATATTGGAGTT 57.167 33.333 0.00 0.00 0.00 3.01
563 564 6.193514 TGTGTTGCATGTATATTGGAGTTG 57.806 37.500 0.00 0.00 0.00 3.16
564 565 5.709631 TGTGTTGCATGTATATTGGAGTTGT 59.290 36.000 0.00 0.00 0.00 3.32
565 566 6.029607 GTGTTGCATGTATATTGGAGTTGTG 58.970 40.000 0.00 0.00 0.00 3.33
566 567 5.125257 TGTTGCATGTATATTGGAGTTGTGG 59.875 40.000 0.00 0.00 0.00 4.17
567 568 3.631686 TGCATGTATATTGGAGTTGTGGC 59.368 43.478 0.00 0.00 0.00 5.01
568 569 3.004734 GCATGTATATTGGAGTTGTGGCC 59.995 47.826 0.00 0.00 0.00 5.36
569 570 3.290948 TGTATATTGGAGTTGTGGCCC 57.709 47.619 0.00 0.00 0.00 5.80
570 571 2.578480 TGTATATTGGAGTTGTGGCCCA 59.422 45.455 0.00 0.00 0.00 5.36
571 572 2.143876 ATATTGGAGTTGTGGCCCAC 57.856 50.000 7.01 7.01 34.56 4.61
572 573 0.039035 TATTGGAGTTGTGGCCCACC 59.961 55.000 12.25 0.00 32.73 4.61
573 574 1.729267 ATTGGAGTTGTGGCCCACCT 61.729 55.000 12.25 1.20 36.63 4.00
574 575 2.034221 GGAGTTGTGGCCCACCTC 59.966 66.667 12.25 11.32 36.63 3.85
575 576 2.829384 GGAGTTGTGGCCCACCTCA 61.829 63.158 18.22 0.00 37.67 3.86
576 577 1.380302 GAGTTGTGGCCCACCTCAT 59.620 57.895 12.25 0.00 39.14 2.90
577 578 0.618458 GAGTTGTGGCCCACCTCATA 59.382 55.000 12.25 0.00 39.14 2.15
578 579 0.620556 AGTTGTGGCCCACCTCATAG 59.379 55.000 12.25 0.00 39.14 2.23
579 580 0.328258 GTTGTGGCCCACCTCATAGT 59.672 55.000 12.25 0.00 39.14 2.12
580 581 1.072266 TTGTGGCCCACCTCATAGTT 58.928 50.000 12.25 0.00 39.14 2.24
581 582 1.072266 TGTGGCCCACCTCATAGTTT 58.928 50.000 12.25 0.00 34.53 2.66
582 583 1.427368 TGTGGCCCACCTCATAGTTTT 59.573 47.619 12.25 0.00 34.53 2.43
583 584 2.645297 TGTGGCCCACCTCATAGTTTTA 59.355 45.455 12.25 0.00 34.53 1.52
584 585 3.268334 TGTGGCCCACCTCATAGTTTTAT 59.732 43.478 12.25 0.00 34.53 1.40
585 586 3.632145 GTGGCCCACCTCATAGTTTTATG 59.368 47.826 1.17 0.00 38.41 1.90
586 587 3.268334 TGGCCCACCTCATAGTTTTATGT 59.732 43.478 0.00 0.00 38.25 2.29
587 588 4.475381 TGGCCCACCTCATAGTTTTATGTA 59.525 41.667 0.00 0.00 38.25 2.29
588 589 5.063880 GGCCCACCTCATAGTTTTATGTAG 58.936 45.833 0.00 0.00 38.25 2.74
589 590 5.397559 GGCCCACCTCATAGTTTTATGTAGT 60.398 44.000 0.00 0.00 38.25 2.73
590 591 6.120220 GCCCACCTCATAGTTTTATGTAGTT 58.880 40.000 0.00 0.00 38.25 2.24
591 592 6.038271 GCCCACCTCATAGTTTTATGTAGTTG 59.962 42.308 0.00 0.00 38.25 3.16
592 593 7.335627 CCCACCTCATAGTTTTATGTAGTTGA 58.664 38.462 0.00 0.00 38.25 3.18
593 594 7.495934 CCCACCTCATAGTTTTATGTAGTTGAG 59.504 40.741 0.00 0.00 38.25 3.02
597 598 9.751542 CCTCATAGTTTTATGTAGTTGAGGTAG 57.248 37.037 7.34 0.00 42.51 3.18
600 601 9.751542 CATAGTTTTATGTAGTTGAGGTAGAGG 57.248 37.037 0.00 0.00 33.45 3.69
601 602 7.793948 AGTTTTATGTAGTTGAGGTAGAGGT 57.206 36.000 0.00 0.00 0.00 3.85
602 603 7.838884 AGTTTTATGTAGTTGAGGTAGAGGTC 58.161 38.462 0.00 0.00 0.00 3.85
603 604 7.674772 AGTTTTATGTAGTTGAGGTAGAGGTCT 59.325 37.037 0.00 0.00 0.00 3.85
604 605 8.964772 GTTTTATGTAGTTGAGGTAGAGGTCTA 58.035 37.037 0.00 0.00 0.00 2.59
605 606 8.517062 TTTATGTAGTTGAGGTAGAGGTCTAC 57.483 38.462 8.43 8.43 46.09 2.59
626 627 9.727627 GTCTACCCTGTAATTATATATACGTGC 57.272 37.037 0.00 0.00 0.00 5.34
627 628 9.465199 TCTACCCTGTAATTATATATACGTGCA 57.535 33.333 0.00 0.00 0.00 4.57
628 629 9.512435 CTACCCTGTAATTATATATACGTGCAC 57.488 37.037 6.82 6.82 0.00 4.57
629 630 7.325694 ACCCTGTAATTATATATACGTGCACC 58.674 38.462 12.15 0.00 0.00 5.01
630 631 7.038870 ACCCTGTAATTATATATACGTGCACCA 60.039 37.037 12.15 0.00 0.00 4.17
631 632 7.820386 CCCTGTAATTATATATACGTGCACCAA 59.180 37.037 12.15 0.00 0.00 3.67
632 633 8.653338 CCTGTAATTATATATACGTGCACCAAC 58.347 37.037 12.15 0.00 0.00 3.77
633 634 9.198837 CTGTAATTATATATACGTGCACCAACA 57.801 33.333 12.15 0.00 0.00 3.33
634 635 8.980610 TGTAATTATATATACGTGCACCAACAC 58.019 33.333 12.15 0.00 37.19 3.32
635 636 7.429636 AATTATATATACGTGCACCAACACC 57.570 36.000 12.15 0.00 37.25 4.16
636 637 2.032680 ATATACGTGCACCAACACCC 57.967 50.000 12.15 0.00 37.25 4.61
637 638 0.685660 TATACGTGCACCAACACCCA 59.314 50.000 12.15 0.00 37.25 4.51
638 639 0.037590 ATACGTGCACCAACACCCAT 59.962 50.000 12.15 0.00 37.25 4.00
639 640 0.604243 TACGTGCACCAACACCCATC 60.604 55.000 12.15 0.00 37.25 3.51
640 641 1.896183 CGTGCACCAACACCCATCA 60.896 57.895 12.15 0.00 37.25 3.07
641 642 1.451337 CGTGCACCAACACCCATCAA 61.451 55.000 12.15 0.00 37.25 2.57
642 643 0.968405 GTGCACCAACACCCATCAAT 59.032 50.000 5.22 0.00 34.35 2.57
643 644 2.166829 GTGCACCAACACCCATCAATA 58.833 47.619 5.22 0.00 34.35 1.90
644 645 2.094752 GTGCACCAACACCCATCAATAC 60.095 50.000 5.22 0.00 34.35 1.89
645 646 2.166829 GCACCAACACCCATCAATACA 58.833 47.619 0.00 0.00 0.00 2.29
646 647 2.560542 GCACCAACACCCATCAATACAA 59.439 45.455 0.00 0.00 0.00 2.41
647 648 3.613910 GCACCAACACCCATCAATACAAC 60.614 47.826 0.00 0.00 0.00 3.32
648 649 2.817258 ACCAACACCCATCAATACAACG 59.183 45.455 0.00 0.00 0.00 4.10
649 650 2.817258 CCAACACCCATCAATACAACGT 59.183 45.455 0.00 0.00 0.00 3.99
650 651 3.119990 CCAACACCCATCAATACAACGTC 60.120 47.826 0.00 0.00 0.00 4.34
651 652 3.695830 ACACCCATCAATACAACGTCT 57.304 42.857 0.00 0.00 0.00 4.18
652 653 3.334691 ACACCCATCAATACAACGTCTG 58.665 45.455 0.00 0.00 0.00 3.51
653 654 3.244422 ACACCCATCAATACAACGTCTGT 60.244 43.478 8.15 8.15 42.47 3.41
654 655 3.751175 CACCCATCAATACAACGTCTGTT 59.249 43.478 8.33 0.00 39.64 3.16
666 667 4.893424 AACGTCTGTTGTATTGCAAACT 57.107 36.364 1.71 0.00 39.03 2.66
667 668 5.994887 AACGTCTGTTGTATTGCAAACTA 57.005 34.783 1.71 0.00 39.03 2.24
668 669 6.554334 AACGTCTGTTGTATTGCAAACTAT 57.446 33.333 1.71 0.00 39.03 2.12
669 670 6.165659 ACGTCTGTTGTATTGCAAACTATC 57.834 37.500 1.71 0.00 39.03 2.08
670 671 5.121768 ACGTCTGTTGTATTGCAAACTATCC 59.878 40.000 1.71 0.00 39.03 2.59
671 672 5.447279 CGTCTGTTGTATTGCAAACTATCCC 60.447 44.000 1.71 0.00 39.03 3.85
672 673 4.634004 TCTGTTGTATTGCAAACTATCCCG 59.366 41.667 1.71 0.00 39.03 5.14
673 674 3.127895 TGTTGTATTGCAAACTATCCCGC 59.872 43.478 1.71 0.00 39.03 6.13
674 675 2.294074 TGTATTGCAAACTATCCCGCC 58.706 47.619 1.71 0.00 0.00 6.13
675 676 2.092646 TGTATTGCAAACTATCCCGCCT 60.093 45.455 1.71 0.00 0.00 5.52
676 677 3.134985 TGTATTGCAAACTATCCCGCCTA 59.865 43.478 1.71 0.00 0.00 3.93
677 678 2.032680 TTGCAAACTATCCCGCCTAC 57.967 50.000 0.00 0.00 0.00 3.18
678 679 0.906066 TGCAAACTATCCCGCCTACA 59.094 50.000 0.00 0.00 0.00 2.74
679 680 1.134521 TGCAAACTATCCCGCCTACAG 60.135 52.381 0.00 0.00 0.00 2.74
680 681 1.583054 CAAACTATCCCGCCTACAGC 58.417 55.000 0.00 0.00 38.52 4.40
681 682 1.139058 CAAACTATCCCGCCTACAGCT 59.861 52.381 0.00 0.00 40.39 4.24
682 683 1.497161 AACTATCCCGCCTACAGCTT 58.503 50.000 0.00 0.00 40.39 3.74
683 684 0.753262 ACTATCCCGCCTACAGCTTG 59.247 55.000 0.00 0.00 40.39 4.01
684 685 0.601311 CTATCCCGCCTACAGCTTGC 60.601 60.000 0.00 0.00 40.39 4.01
688 689 4.451150 CGCCTACAGCTTGCGGGA 62.451 66.667 8.39 0.00 44.29 5.14
689 690 2.512515 GCCTACAGCTTGCGGGAG 60.513 66.667 0.00 0.00 38.99 4.30
707 708 2.887568 CTGCACGGGAGCGTCATC 60.888 66.667 0.00 0.00 37.31 2.92
708 709 3.647649 CTGCACGGGAGCGTCATCA 62.648 63.158 0.00 0.00 37.31 3.07
729 730 9.177608 TCATCACCTCGAATCTTGAATAAAAAT 57.822 29.630 0.00 0.00 0.00 1.82
789 790 5.779922 AGAACAAAGTTAGCGATGTACTCA 58.220 37.500 0.00 0.00 0.00 3.41
790 791 5.634020 AGAACAAAGTTAGCGATGTACTCAC 59.366 40.000 0.00 0.00 0.00 3.51
791 792 5.135508 ACAAAGTTAGCGATGTACTCACT 57.864 39.130 0.00 0.00 0.00 3.41
792 793 5.162075 ACAAAGTTAGCGATGTACTCACTC 58.838 41.667 0.00 0.00 0.00 3.51
793 794 5.161358 CAAAGTTAGCGATGTACTCACTCA 58.839 41.667 0.00 0.00 0.00 3.41
794 795 4.358494 AGTTAGCGATGTACTCACTCAC 57.642 45.455 0.00 0.00 0.00 3.51
795 796 4.011023 AGTTAGCGATGTACTCACTCACT 58.989 43.478 0.00 0.00 0.00 3.41
797 798 2.163509 AGCGATGTACTCACTCACTGT 58.836 47.619 0.00 0.00 0.00 3.55
798 799 2.162608 AGCGATGTACTCACTCACTGTC 59.837 50.000 0.00 0.00 0.00 3.51
799 800 2.095212 GCGATGTACTCACTCACTGTCA 60.095 50.000 0.00 0.00 0.00 3.58
800 801 3.752731 CGATGTACTCACTCACTGTCAG 58.247 50.000 0.00 0.00 0.00 3.51
801 802 3.189495 CGATGTACTCACTCACTGTCAGT 59.811 47.826 0.00 0.00 0.00 3.41
803 804 2.623416 TGTACTCACTCACTGTCAGTGG 59.377 50.000 28.47 21.54 45.94 4.00
804 805 1.781786 ACTCACTCACTGTCAGTGGT 58.218 50.000 28.47 22.10 45.94 4.16
805 806 1.410517 ACTCACTCACTGTCAGTGGTG 59.589 52.381 29.80 29.80 45.94 4.17
806 807 1.410517 CTCACTCACTGTCAGTGGTGT 59.589 52.381 31.72 26.32 45.94 4.16
807 808 2.623416 CTCACTCACTGTCAGTGGTGTA 59.377 50.000 31.72 23.72 45.94 2.90
808 809 2.361119 TCACTCACTGTCAGTGGTGTAC 59.639 50.000 31.72 1.61 45.94 2.90
809 810 2.362397 CACTCACTGTCAGTGGTGTACT 59.638 50.000 28.56 11.59 45.94 2.73
810 811 3.568430 CACTCACTGTCAGTGGTGTACTA 59.432 47.826 28.56 13.86 45.94 1.82
811 812 3.568853 ACTCACTGTCAGTGGTGTACTAC 59.431 47.826 28.47 0.00 45.94 2.73
824 827 5.235831 GTGGTGTACTACTGAAAGGTCAAAC 59.764 44.000 0.00 0.00 39.30 2.93
831 834 4.150897 ACTGAAAGGTCAAACTACTGCA 57.849 40.909 0.00 0.00 39.30 4.41
877 880 1.029681 GTTCTCCACCCACAACAACC 58.970 55.000 0.00 0.00 0.00 3.77
878 881 0.923358 TTCTCCACCCACAACAACCT 59.077 50.000 0.00 0.00 0.00 3.50
885 888 1.525995 CCACAACAACCTCCACGCT 60.526 57.895 0.00 0.00 0.00 5.07
888 891 0.532862 ACAACAACCTCCACGCTCTG 60.533 55.000 0.00 0.00 0.00 3.35
890 893 0.249911 AACAACCTCCACGCTCTGTC 60.250 55.000 0.00 0.00 0.00 3.51
892 895 0.389166 CAACCTCCACGCTCTGTCTC 60.389 60.000 0.00 0.00 0.00 3.36
893 896 0.540830 AACCTCCACGCTCTGTCTCT 60.541 55.000 0.00 0.00 0.00 3.10
895 898 1.662438 CCTCCACGCTCTGTCTCTCC 61.662 65.000 0.00 0.00 0.00 3.71
896 899 0.679640 CTCCACGCTCTGTCTCTCCT 60.680 60.000 0.00 0.00 0.00 3.69
897 900 0.251386 TCCACGCTCTGTCTCTCCTT 60.251 55.000 0.00 0.00 0.00 3.36
898 901 0.108898 CCACGCTCTGTCTCTCCTTG 60.109 60.000 0.00 0.00 0.00 3.61
899 902 0.884514 CACGCTCTGTCTCTCCTTGA 59.115 55.000 0.00 0.00 0.00 3.02
901 904 1.748493 ACGCTCTGTCTCTCCTTGATC 59.252 52.381 0.00 0.00 0.00 2.92
929 956 2.826674 TCTGGAATTTGATCCCACCC 57.173 50.000 0.00 0.00 38.82 4.61
947 974 4.920112 CCCACACGCGTCCCAACA 62.920 66.667 9.86 0.00 0.00 3.33
948 975 3.645975 CCACACGCGTCCCAACAC 61.646 66.667 9.86 0.00 0.00 3.32
949 976 2.587753 CACACGCGTCCCAACACT 60.588 61.111 9.86 0.00 0.00 3.55
950 977 2.177580 CACACGCGTCCCAACACTT 61.178 57.895 9.86 0.00 0.00 3.16
951 978 2.177580 ACACGCGTCCCAACACTTG 61.178 57.895 9.86 0.00 0.00 3.16
952 979 1.885388 CACGCGTCCCAACACTTGA 60.885 57.895 9.86 0.00 0.00 3.02
953 980 1.885850 ACGCGTCCCAACACTTGAC 60.886 57.895 5.58 0.00 0.00 3.18
955 982 3.637714 CGTCCCAACACTTGACGG 58.362 61.111 3.52 0.00 45.93 4.79
956 983 2.604174 CGTCCCAACACTTGACGGC 61.604 63.158 3.52 0.00 45.93 5.68
957 984 2.112297 TCCCAACACTTGACGGCC 59.888 61.111 0.00 0.00 0.00 6.13
958 985 3.353836 CCCAACACTTGACGGCCG 61.354 66.667 26.86 26.86 0.00 6.13
959 986 3.353836 CCAACACTTGACGGCCGG 61.354 66.667 31.76 14.36 0.00 6.13
987 1014 0.039911 AGACTGACGCCCTCTTAGGT 59.960 55.000 0.00 0.00 31.93 3.08
1091 1121 3.570638 CGGCCAGATCAAGCTGCG 61.571 66.667 2.24 0.29 34.56 5.18
1092 1122 3.207669 GGCCAGATCAAGCTGCGG 61.208 66.667 0.00 0.00 34.56 5.69
1095 1125 2.816958 CAGATCAAGCTGCGGCGT 60.817 61.111 12.87 5.85 44.37 5.68
1107 1137 0.668096 TGCGGCGTAACTTCGACAAT 60.668 50.000 9.37 0.00 38.97 2.71
1182 1212 3.474570 GAGAGGCGGGCCATCACT 61.475 66.667 12.97 5.54 38.92 3.41
1265 1298 2.283298 GCTTGATGATTCCGAAGCAGA 58.717 47.619 5.19 0.00 40.47 4.26
1312 1346 7.148000 GCCCTCTTCTTTGTTCTTGCTATAATT 60.148 37.037 0.00 0.00 0.00 1.40
1342 1376 6.453926 TGTCAAACTTGTTTTAACTACCCC 57.546 37.500 0.00 0.00 0.00 4.95
1343 1377 5.066246 TGTCAAACTTGTTTTAACTACCCCG 59.934 40.000 0.00 0.00 0.00 5.73
1344 1378 5.066375 GTCAAACTTGTTTTAACTACCCCGT 59.934 40.000 0.00 0.00 0.00 5.28
1345 1379 5.296531 TCAAACTTGTTTTAACTACCCCGTC 59.703 40.000 0.00 0.00 0.00 4.79
1346 1380 3.743521 ACTTGTTTTAACTACCCCGTCC 58.256 45.455 0.00 0.00 0.00 4.79
1347 1381 3.136260 ACTTGTTTTAACTACCCCGTCCA 59.864 43.478 0.00 0.00 0.00 4.02
1348 1382 3.853355 TGTTTTAACTACCCCGTCCAA 57.147 42.857 0.00 0.00 0.00 3.53
1349 1383 4.162040 TGTTTTAACTACCCCGTCCAAA 57.838 40.909 0.00 0.00 0.00 3.28
1350 1384 4.530875 TGTTTTAACTACCCCGTCCAAAA 58.469 39.130 0.00 0.00 0.00 2.44
1352 1386 5.597594 TGTTTTAACTACCCCGTCCAAAATT 59.402 36.000 0.00 0.00 0.00 1.82
1357 1391 2.375014 ACCCCGTCCAAAATTCTTGT 57.625 45.000 0.00 0.00 0.00 3.16
1358 1392 2.235891 ACCCCGTCCAAAATTCTTGTC 58.764 47.619 0.00 0.00 0.00 3.18
1360 1394 2.890945 CCCCGTCCAAAATTCTTGTCTT 59.109 45.455 0.00 0.00 0.00 3.01
1361 1395 4.076394 CCCCGTCCAAAATTCTTGTCTTA 58.924 43.478 0.00 0.00 0.00 2.10
1362 1396 4.521256 CCCCGTCCAAAATTCTTGTCTTAA 59.479 41.667 0.00 0.00 0.00 1.85
1363 1397 5.010213 CCCCGTCCAAAATTCTTGTCTTAAA 59.990 40.000 0.00 0.00 0.00 1.52
1365 1399 7.151976 CCCGTCCAAAATTCTTGTCTTAAATT 58.848 34.615 0.00 0.00 0.00 1.82
1366 1400 7.655732 CCCGTCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
1367 1401 8.487176 CCGTCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
1378 1412 9.582431 TCTTGTCTTAAATTTGTCTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
1379 1413 9.582431 CTTGTCTTAAATTTGTCTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
1381 1415 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
1385 1419 9.754382 TTAAATTTGTCTAGATACGGATGTACC 57.246 33.333 0.00 0.00 32.26 3.34
1386 1420 7.598759 AATTTGTCTAGATACGGATGTACCT 57.401 36.000 0.00 0.00 36.31 3.08
1387 1421 8.701908 AATTTGTCTAGATACGGATGTACCTA 57.298 34.615 0.00 0.00 36.31 3.08
1390 1424 9.797642 TTTGTCTAGATACGGATGTACCTAATA 57.202 33.333 0.00 0.00 36.31 0.98
1391 1425 8.783833 TGTCTAGATACGGATGTACCTAATAC 57.216 38.462 0.00 0.00 36.31 1.89
1392 1426 7.547019 TGTCTAGATACGGATGTACCTAATACG 59.453 40.741 0.00 0.00 36.47 3.06
1393 1427 7.547370 GTCTAGATACGGATGTACCTAATACGT 59.453 40.741 7.08 7.08 46.14 3.57
1394 1428 6.492007 AGATACGGATGTACCTAATACGTG 57.508 41.667 11.18 0.00 44.18 4.49
1396 1430 4.558538 ACGGATGTACCTAATACGTGAC 57.441 45.455 0.00 0.00 42.88 3.67
1397 1431 4.202441 ACGGATGTACCTAATACGTGACT 58.798 43.478 0.00 0.00 42.88 3.41
1398 1432 4.641989 ACGGATGTACCTAATACGTGACTT 59.358 41.667 0.00 0.00 42.88 3.01
1399 1433 4.974275 CGGATGTACCTAATACGTGACTTG 59.026 45.833 0.00 0.00 36.47 3.16
1401 1435 6.514541 CGGATGTACCTAATACGTGACTTGAT 60.515 42.308 0.00 0.00 36.47 2.57
1403 1437 8.021973 GGATGTACCTAATACGTGACTTGATAG 58.978 40.741 0.00 0.00 36.47 2.08
1404 1438 7.870509 TGTACCTAATACGTGACTTGATAGT 57.129 36.000 0.00 0.00 36.47 2.12
1406 1440 8.186163 TGTACCTAATACGTGACTTGATAGTTG 58.814 37.037 0.00 0.00 36.47 3.16
1407 1441 7.400599 ACCTAATACGTGACTTGATAGTTGA 57.599 36.000 0.00 0.00 33.84 3.18
1408 1442 8.008513 ACCTAATACGTGACTTGATAGTTGAT 57.991 34.615 0.00 0.00 33.84 2.57
1409 1443 9.128404 ACCTAATACGTGACTTGATAGTTGATA 57.872 33.333 0.00 0.00 33.84 2.15
1410 1444 9.395707 CCTAATACGTGACTTGATAGTTGATAC 57.604 37.037 0.00 0.00 33.84 2.24
1411 1445 9.946165 CTAATACGTGACTTGATAGTTGATACA 57.054 33.333 0.00 0.00 33.84 2.29
1413 1447 9.464714 AATACGTGACTTGATAGTTGATACATC 57.535 33.333 0.00 0.00 33.84 3.06
1415 1449 5.399596 CGTGACTTGATAGTTGATACATCCG 59.600 44.000 0.00 0.00 33.84 4.18
1416 1450 6.273825 GTGACTTGATAGTTGATACATCCGT 58.726 40.000 0.00 0.00 33.84 4.69
1417 1451 7.423199 GTGACTTGATAGTTGATACATCCGTA 58.577 38.462 0.00 0.00 33.84 4.02
1418 1452 8.082852 GTGACTTGATAGTTGATACATCCGTAT 58.917 37.037 0.00 0.00 36.47 3.06
1419 1453 8.297426 TGACTTGATAGTTGATACATCCGTATC 58.703 37.037 5.80 5.80 43.19 2.24
1420 1454 8.516234 GACTTGATAGTTGATACATCCGTATCT 58.484 37.037 12.45 0.00 43.24 1.98
1434 1468 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1435 1469 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1436 1470 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1437 1471 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1438 1472 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1439 1473 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1447 1481 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1448 1482 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1449 1483 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1450 1484 8.359642 CAAATCTAAGACAAGAATTTTGGGACA 58.640 33.333 5.68 0.00 28.49 4.02
1451 1485 7.693969 ATCTAAGACAAGAATTTTGGGACAG 57.306 36.000 5.68 0.00 42.39 3.51
1452 1486 6.837312 TCTAAGACAAGAATTTTGGGACAGA 58.163 36.000 5.68 0.00 42.39 3.41
1453 1487 6.936900 TCTAAGACAAGAATTTTGGGACAGAG 59.063 38.462 5.68 0.00 42.39 3.35
1454 1488 5.310409 AGACAAGAATTTTGGGACAGAGA 57.690 39.130 5.68 0.00 42.39 3.10
1455 1489 5.312079 AGACAAGAATTTTGGGACAGAGAG 58.688 41.667 5.68 0.00 42.39 3.20
1456 1490 5.072329 AGACAAGAATTTTGGGACAGAGAGA 59.928 40.000 5.68 0.00 42.39 3.10
1461 1495 7.979786 AGAATTTTGGGACAGAGAGAGTATA 57.020 36.000 0.00 0.00 42.39 1.47
1479 1513 5.643664 AGTATATGTTTGTGTACGCGAAGA 58.356 37.500 15.93 8.95 0.00 2.87
1503 1537 9.976776 AGATAACTAGCAGCCTATTATGTACTA 57.023 33.333 0.00 0.00 0.00 1.82
1508 1542 9.191479 ACTAGCAGCCTATTATGTACTATAAGG 57.809 37.037 0.00 0.00 0.00 2.69
1558 1592 9.899661 AATAACTAAAGCACCTATGTTGTGATA 57.100 29.630 0.00 0.00 35.74 2.15
1560 1594 8.630054 AACTAAAGCACCTATGTTGTGATAAA 57.370 30.769 0.00 0.00 35.74 1.40
1598 1632 2.159585 TGAATGCGTGATTTTGGTAGCG 60.160 45.455 0.00 0.00 0.00 4.26
1610 1644 0.800012 TGGTAGCGCAACGATTTTCC 59.200 50.000 11.47 0.00 0.00 3.13
1621 1655 5.095490 GCAACGATTTTCCTTATGACAAGG 58.905 41.667 0.00 0.00 38.78 3.61
1699 1733 4.399004 AGATCATCGAAGTTCCTCCTTG 57.601 45.455 0.00 0.00 0.00 3.61
1704 1738 2.317040 TCGAAGTTCCTCCTTGTCAGT 58.683 47.619 0.00 0.00 0.00 3.41
1705 1739 2.698797 TCGAAGTTCCTCCTTGTCAGTT 59.301 45.455 0.00 0.00 0.00 3.16
1706 1740 2.802816 CGAAGTTCCTCCTTGTCAGTTG 59.197 50.000 0.00 0.00 0.00 3.16
1725 1759 7.389053 GTCAGTTGTCTCATTTCAGGTAAGAAT 59.611 37.037 0.00 0.00 0.00 2.40
1726 1760 7.939039 TCAGTTGTCTCATTTCAGGTAAGAATT 59.061 33.333 0.00 0.00 0.00 2.17
1747 1781 8.787852 AGAATTCAAGAAGAGTCAAAATGTACC 58.212 33.333 8.44 0.00 0.00 3.34
1753 1787 9.014297 CAAGAAGAGTCAAAATGTACCCTTTAT 57.986 33.333 0.00 0.00 0.00 1.40
1759 1793 8.575649 AGTCAAAATGTACCCTTTATAGGTTG 57.424 34.615 0.00 0.00 40.19 3.77
1770 1804 6.152831 ACCCTTTATAGGTTGTTTGCAGATTC 59.847 38.462 0.00 0.00 40.19 2.52
1775 1809 2.893489 AGGTTGTTTGCAGATTCCTTCC 59.107 45.455 0.00 0.00 0.00 3.46
1798 1832 7.918076 TCCCATTCTAATTGTTCTTGTACTCT 58.082 34.615 0.00 0.00 0.00 3.24
1804 1838 5.825593 AATTGTTCTTGTACTCTCTCCCA 57.174 39.130 0.00 0.00 0.00 4.37
1810 1844 5.825593 TCTTGTACTCTCTCCCACAAAAT 57.174 39.130 0.00 0.00 31.00 1.82
1813 1847 6.269077 TCTTGTACTCTCTCCCACAAAATGTA 59.731 38.462 0.00 0.00 31.00 2.29
1820 1854 6.173339 TCTCTCCCACAAAATGTATGTTCTC 58.827 40.000 0.00 0.00 0.00 2.87
1821 1855 5.875224 TCTCCCACAAAATGTATGTTCTCA 58.125 37.500 0.00 0.00 0.00 3.27
1877 1911 2.683465 GCAGGAAGGCCCCATCTGA 61.683 63.158 14.64 0.00 34.66 3.27
1881 1915 1.691219 GAAGGCCCCATCTGAACCA 59.309 57.895 0.00 0.00 0.00 3.67
1923 1958 0.402121 GGAGATGACCCCCTATTGGC 59.598 60.000 0.00 0.00 0.00 4.52
1928 1963 0.548926 TGACCCCCTATTGGCTGTCA 60.549 55.000 10.45 10.45 38.86 3.58
1942 1977 3.638160 TGGCTGTCAGCATCTTTTTCTTT 59.362 39.130 25.68 0.00 44.75 2.52
2004 2039 8.691797 TCATATAGTTATATACCATTCGCTGCA 58.308 33.333 0.00 0.00 0.00 4.41
2007 2042 4.750098 AGTTATATACCATTCGCTGCACAC 59.250 41.667 0.00 0.00 0.00 3.82
2013 2048 2.093711 ACCATTCGCTGCACACTGTATA 60.094 45.455 0.00 0.00 0.00 1.47
2014 2049 2.935849 CCATTCGCTGCACACTGTATAA 59.064 45.455 0.00 0.00 0.00 0.98
2015 2050 3.242413 CCATTCGCTGCACACTGTATAAC 60.242 47.826 0.00 0.00 0.00 1.89
2051 2086 3.248024 TGATCTTGGTCCCTAACAGTGT 58.752 45.455 0.00 0.00 0.00 3.55
2081 2116 8.469309 TGGTACAGTCTTTACAGTACTACTTT 57.531 34.615 0.00 0.00 44.05 2.66
2111 2146 9.646522 AAAAGGGTTATGATAGACAATAATGCT 57.353 29.630 0.00 0.00 0.00 3.79
2167 2202 4.518970 TGAGACACTTCCAAACATTTAGCC 59.481 41.667 0.00 0.00 0.00 3.93
2190 2225 5.347907 CCAAGTACTAACAGATCAACGGAAC 59.652 44.000 0.00 0.00 0.00 3.62
2523 2558 3.984732 GGGGGCCTTGGCAAGACT 61.985 66.667 28.18 0.00 0.00 3.24
3572 3652 3.956199 CTCCAAAATGCACATCCCATACT 59.044 43.478 0.00 0.00 0.00 2.12
3592 3672 1.609208 ACCACACATCCAAGCTCAAC 58.391 50.000 0.00 0.00 0.00 3.18
3984 4645 8.441311 TCATGGATTAGGAAGCTGAGTATAAT 57.559 34.615 0.00 0.00 0.00 1.28
4101 5106 1.748732 TGACATTTGGAGGGTGGGTA 58.251 50.000 0.00 0.00 0.00 3.69
4392 5965 3.779444 TCTAGCCAGATCGGTAATGGAT 58.221 45.455 3.58 0.00 36.09 3.41
4414 5987 1.545759 TGAAATTCTCGTCGCTAGCG 58.454 50.000 30.91 30.91 41.35 4.26
4470 6043 4.541085 TGCATTGCTCGATGATTGTAAG 57.459 40.909 10.49 0.00 0.00 2.34
4661 6240 5.010820 GGTATCTTAACGCTCCCAGAATACT 59.989 44.000 0.00 0.00 0.00 2.12
5044 6627 9.993881 CTTATGTTAATTGCAGAAAAACGAAAG 57.006 29.630 0.00 0.00 0.00 2.62
5056 6639 1.791662 ACGAAAGTATTTGGCGCCG 59.208 52.632 23.90 7.95 46.88 6.46
5059 6642 0.247537 GAAAGTATTTGGCGCCGTCG 60.248 55.000 23.90 0.00 39.27 5.12
5072 6655 2.317609 CCGTCGCCAAAGTGGAGTG 61.318 63.158 0.00 0.00 40.96 3.51
5076 6659 0.179234 TCGCCAAAGTGGAGTGTTCA 59.821 50.000 0.00 0.00 40.96 3.18
5079 6662 2.541588 CGCCAAAGTGGAGTGTTCAAAG 60.542 50.000 0.00 0.00 40.96 2.77
5124 6707 3.137544 TGGAACAGCTCCCTGAAGTTTTA 59.862 43.478 0.00 0.00 44.69 1.52
5440 7092 6.830324 TGATGCTATTTGCTCTTTACCTGAAT 59.170 34.615 0.00 0.00 43.37 2.57
5473 7125 1.882912 TAGAAAGCTGCACACACTGG 58.117 50.000 1.02 0.00 0.00 4.00
5607 7262 5.934625 CAGTGCTAGTTCCATATCATTACCC 59.065 44.000 0.00 0.00 0.00 3.69
5980 7638 2.292103 GAGTGCATCAGACTCCAGTC 57.708 55.000 0.00 0.00 45.08 3.51
6049 7707 0.482446 TTGCCCCAAACTGAGGATGT 59.518 50.000 0.00 0.00 0.00 3.06
6050 7708 0.251297 TGCCCCAAACTGAGGATGTG 60.251 55.000 0.00 0.00 0.00 3.21
6207 7871 1.818785 GCCTCTGCATCAGTGGAGC 60.819 63.158 16.43 0.00 44.90 4.70
6613 8277 6.731292 AGAAACTGAAAATTAACTGCCCTT 57.269 33.333 0.00 0.00 0.00 3.95
6839 8503 3.467374 TGCCAATTCCTTGTTGTTTCC 57.533 42.857 0.00 0.00 0.00 3.13
6904 8568 3.630312 GGTTTTGTTCTGTTCTGCCTGTA 59.370 43.478 0.00 0.00 0.00 2.74
6950 8614 8.806634 TGTTTCGATTTCTTGAAATGTTCTTTG 58.193 29.630 12.62 0.00 37.17 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.416329 GCTCCATTTTCCTCAATATTTGTGTAT 58.584 33.333 0.00 0.00 0.00 2.29
31 32 6.870769 AGCTCCATTTTCCTCAATATTTGTG 58.129 36.000 0.00 0.00 0.00 3.33
56 57 3.878160 ACTTAAGCTTTCTCCTCTCCG 57.122 47.619 3.20 0.00 0.00 4.63
103 104 0.471617 ACCTCCTATGCACATGAGGC 59.528 55.000 15.44 3.11 46.76 4.70
326 327 0.539669 GTTGGAGGGACAAACCAGGG 60.540 60.000 0.00 0.00 41.20 4.45
340 341 3.839979 CCTTTTGGTCCCAGTTGGA 57.160 52.632 0.00 0.00 42.41 3.53
494 495 5.564259 GCAGTCGAACACTAGTAGAAAAGGA 60.564 44.000 3.59 0.00 32.21 3.36
513 514 1.823169 TACTCAACACCCCCGCAGTC 61.823 60.000 0.00 0.00 0.00 3.51
514 515 1.198759 ATACTCAACACCCCCGCAGT 61.199 55.000 0.00 0.00 0.00 4.40
515 516 0.744414 CATACTCAACACCCCCGCAG 60.744 60.000 0.00 0.00 0.00 5.18
516 517 1.298340 CATACTCAACACCCCCGCA 59.702 57.895 0.00 0.00 0.00 5.69
517 518 0.538118 TACATACTCAACACCCCCGC 59.462 55.000 0.00 0.00 0.00 6.13
518 519 3.553828 AATACATACTCAACACCCCCG 57.446 47.619 0.00 0.00 0.00 5.73
519 520 5.014202 ACAAAATACATACTCAACACCCCC 58.986 41.667 0.00 0.00 0.00 5.40
520 521 5.475564 ACACAAAATACATACTCAACACCCC 59.524 40.000 0.00 0.00 0.00 4.95
521 522 6.569179 ACACAAAATACATACTCAACACCC 57.431 37.500 0.00 0.00 0.00 4.61
522 523 6.362283 GCAACACAAAATACATACTCAACACC 59.638 38.462 0.00 0.00 0.00 4.16
523 524 6.915300 TGCAACACAAAATACATACTCAACAC 59.085 34.615 0.00 0.00 0.00 3.32
524 525 7.032377 TGCAACACAAAATACATACTCAACA 57.968 32.000 0.00 0.00 0.00 3.33
525 526 7.594758 ACATGCAACACAAAATACATACTCAAC 59.405 33.333 0.00 0.00 0.00 3.18
526 527 7.656412 ACATGCAACACAAAATACATACTCAA 58.344 30.769 0.00 0.00 0.00 3.02
527 528 7.213216 ACATGCAACACAAAATACATACTCA 57.787 32.000 0.00 0.00 0.00 3.41
532 533 9.531942 CCAATATACATGCAACACAAAATACAT 57.468 29.630 0.00 0.00 0.00 2.29
533 534 8.743714 TCCAATATACATGCAACACAAAATACA 58.256 29.630 0.00 0.00 0.00 2.29
534 535 9.236691 CTCCAATATACATGCAACACAAAATAC 57.763 33.333 0.00 0.00 0.00 1.89
535 536 8.965819 ACTCCAATATACATGCAACACAAAATA 58.034 29.630 0.00 0.00 0.00 1.40
536 537 7.839907 ACTCCAATATACATGCAACACAAAAT 58.160 30.769 0.00 0.00 0.00 1.82
537 538 7.225784 ACTCCAATATACATGCAACACAAAA 57.774 32.000 0.00 0.00 0.00 2.44
538 539 6.832520 ACTCCAATATACATGCAACACAAA 57.167 33.333 0.00 0.00 0.00 2.83
539 540 6.208402 ACAACTCCAATATACATGCAACACAA 59.792 34.615 0.00 0.00 0.00 3.33
540 541 5.709631 ACAACTCCAATATACATGCAACACA 59.290 36.000 0.00 0.00 0.00 3.72
541 542 6.029607 CACAACTCCAATATACATGCAACAC 58.970 40.000 0.00 0.00 0.00 3.32
542 543 5.125257 CCACAACTCCAATATACATGCAACA 59.875 40.000 0.00 0.00 0.00 3.33
543 544 5.581605 CCACAACTCCAATATACATGCAAC 58.418 41.667 0.00 0.00 0.00 4.17
544 545 4.097741 GCCACAACTCCAATATACATGCAA 59.902 41.667 0.00 0.00 0.00 4.08
545 546 3.631686 GCCACAACTCCAATATACATGCA 59.368 43.478 0.00 0.00 0.00 3.96
546 547 3.004734 GGCCACAACTCCAATATACATGC 59.995 47.826 0.00 0.00 0.00 4.06
547 548 3.569701 GGGCCACAACTCCAATATACATG 59.430 47.826 4.39 0.00 0.00 3.21
548 549 3.204158 TGGGCCACAACTCCAATATACAT 59.796 43.478 0.00 0.00 0.00 2.29
549 550 2.578480 TGGGCCACAACTCCAATATACA 59.422 45.455 0.00 0.00 0.00 2.29
550 551 2.949644 GTGGGCCACAACTCCAATATAC 59.050 50.000 31.26 0.00 34.08 1.47
551 552 2.092103 GGTGGGCCACAACTCCAATATA 60.092 50.000 35.69 0.00 35.86 0.86
552 553 1.341976 GGTGGGCCACAACTCCAATAT 60.342 52.381 35.69 0.00 35.86 1.28
553 554 0.039035 GGTGGGCCACAACTCCAATA 59.961 55.000 35.69 0.00 35.86 1.90
554 555 1.228862 GGTGGGCCACAACTCCAAT 60.229 57.895 35.69 0.00 35.86 3.16
555 556 2.197324 GGTGGGCCACAACTCCAA 59.803 61.111 35.69 0.00 35.86 3.53
556 557 2.776526 AGGTGGGCCACAACTCCA 60.777 61.111 35.69 0.00 46.59 3.86
560 561 0.328258 ACTATGAGGTGGGCCACAAC 59.672 55.000 35.69 27.17 38.79 3.32
561 562 1.072266 AACTATGAGGTGGGCCACAA 58.928 50.000 35.69 21.78 38.79 3.33
562 563 1.072266 AAACTATGAGGTGGGCCACA 58.928 50.000 35.69 18.18 39.60 4.17
563 564 2.215942 AAAACTATGAGGTGGGCCAC 57.784 50.000 28.69 28.69 37.19 5.01
564 565 3.268334 ACATAAAACTATGAGGTGGGCCA 59.732 43.478 0.00 0.00 37.19 5.36
565 566 3.898482 ACATAAAACTATGAGGTGGGCC 58.102 45.455 0.00 0.00 0.00 5.80
566 567 5.681639 ACTACATAAAACTATGAGGTGGGC 58.318 41.667 0.00 0.00 0.00 5.36
567 568 7.335627 TCAACTACATAAAACTATGAGGTGGG 58.664 38.462 0.00 0.00 30.47 4.61
568 569 7.495934 CCTCAACTACATAAAACTATGAGGTGG 59.504 40.741 9.72 0.00 44.81 4.61
569 570 8.425577 CCTCAACTACATAAAACTATGAGGTG 57.574 38.462 9.72 2.52 44.81 4.00
574 575 9.751542 CCTCTACCTCAACTACATAAAACTATG 57.248 37.037 0.00 0.00 0.00 2.23
575 576 9.490083 ACCTCTACCTCAACTACATAAAACTAT 57.510 33.333 0.00 0.00 0.00 2.12
576 577 8.890410 ACCTCTACCTCAACTACATAAAACTA 57.110 34.615 0.00 0.00 0.00 2.24
577 578 7.674772 AGACCTCTACCTCAACTACATAAAACT 59.325 37.037 0.00 0.00 0.00 2.66
578 579 7.838884 AGACCTCTACCTCAACTACATAAAAC 58.161 38.462 0.00 0.00 0.00 2.43
579 580 8.964772 GTAGACCTCTACCTCAACTACATAAAA 58.035 37.037 1.49 0.00 42.19 1.52
580 581 8.517062 GTAGACCTCTACCTCAACTACATAAA 57.483 38.462 1.49 0.00 42.19 1.40
600 601 9.727627 GCACGTATATATAATTACAGGGTAGAC 57.272 37.037 0.00 0.00 0.00 2.59
601 602 9.465199 TGCACGTATATATAATTACAGGGTAGA 57.535 33.333 0.00 0.00 0.00 2.59
602 603 9.512435 GTGCACGTATATATAATTACAGGGTAG 57.488 37.037 0.00 0.00 0.00 3.18
603 604 8.469200 GGTGCACGTATATATAATTACAGGGTA 58.531 37.037 11.45 0.00 0.00 3.69
604 605 7.038870 TGGTGCACGTATATATAATTACAGGGT 60.039 37.037 11.45 0.00 0.00 4.34
605 606 7.324935 TGGTGCACGTATATATAATTACAGGG 58.675 38.462 11.45 0.00 0.00 4.45
606 607 8.653338 GTTGGTGCACGTATATATAATTACAGG 58.347 37.037 11.45 0.00 0.00 4.00
607 608 9.198837 TGTTGGTGCACGTATATATAATTACAG 57.801 33.333 11.45 0.00 0.00 2.74
608 609 8.980610 GTGTTGGTGCACGTATATATAATTACA 58.019 33.333 11.45 0.00 0.00 2.41
609 610 8.437742 GGTGTTGGTGCACGTATATATAATTAC 58.562 37.037 11.45 0.00 40.08 1.89
610 611 7.603404 GGGTGTTGGTGCACGTATATATAATTA 59.397 37.037 11.45 0.00 40.08 1.40
611 612 6.428771 GGGTGTTGGTGCACGTATATATAATT 59.571 38.462 11.45 0.00 40.08 1.40
612 613 5.935789 GGGTGTTGGTGCACGTATATATAAT 59.064 40.000 11.45 0.00 40.08 1.28
613 614 5.163332 TGGGTGTTGGTGCACGTATATATAA 60.163 40.000 11.45 0.00 40.08 0.98
614 615 4.344390 TGGGTGTTGGTGCACGTATATATA 59.656 41.667 11.45 0.00 40.08 0.86
615 616 3.134985 TGGGTGTTGGTGCACGTATATAT 59.865 43.478 11.45 0.00 40.08 0.86
616 617 2.500504 TGGGTGTTGGTGCACGTATATA 59.499 45.455 11.45 0.00 40.08 0.86
617 618 1.279558 TGGGTGTTGGTGCACGTATAT 59.720 47.619 11.45 0.00 40.08 0.86
618 619 0.685660 TGGGTGTTGGTGCACGTATA 59.314 50.000 11.45 0.00 40.08 1.47
619 620 0.037590 ATGGGTGTTGGTGCACGTAT 59.962 50.000 11.45 0.00 40.08 3.06
620 621 0.604243 GATGGGTGTTGGTGCACGTA 60.604 55.000 11.45 0.00 40.08 3.57
621 622 1.896660 GATGGGTGTTGGTGCACGT 60.897 57.895 11.45 0.00 40.08 4.49
622 623 1.451337 TTGATGGGTGTTGGTGCACG 61.451 55.000 11.45 0.00 40.08 5.34
623 624 0.968405 ATTGATGGGTGTTGGTGCAC 59.032 50.000 8.80 8.80 38.56 4.57
624 625 2.166829 GTATTGATGGGTGTTGGTGCA 58.833 47.619 0.00 0.00 0.00 4.57
625 626 2.166829 TGTATTGATGGGTGTTGGTGC 58.833 47.619 0.00 0.00 0.00 5.01
626 627 3.365868 CGTTGTATTGATGGGTGTTGGTG 60.366 47.826 0.00 0.00 0.00 4.17
627 628 2.817258 CGTTGTATTGATGGGTGTTGGT 59.183 45.455 0.00 0.00 0.00 3.67
628 629 2.817258 ACGTTGTATTGATGGGTGTTGG 59.183 45.455 0.00 0.00 0.00 3.77
629 630 3.751175 AGACGTTGTATTGATGGGTGTTG 59.249 43.478 0.00 0.00 0.00 3.33
630 631 3.751175 CAGACGTTGTATTGATGGGTGTT 59.249 43.478 0.00 0.00 0.00 3.32
631 632 3.244422 ACAGACGTTGTATTGATGGGTGT 60.244 43.478 0.00 0.00 38.56 4.16
632 633 3.334691 ACAGACGTTGTATTGATGGGTG 58.665 45.455 0.00 0.00 38.56 4.61
633 634 3.695830 ACAGACGTTGTATTGATGGGT 57.304 42.857 0.00 0.00 38.56 4.51
634 635 4.340894 CAACAGACGTTGTATTGATGGG 57.659 45.455 0.00 0.00 46.20 4.00
645 646 4.893424 AGTTTGCAATACAACAGACGTT 57.107 36.364 0.00 0.00 38.23 3.99
646 647 5.121768 GGATAGTTTGCAATACAACAGACGT 59.878 40.000 0.00 0.00 38.23 4.34
647 648 5.447279 GGGATAGTTTGCAATACAACAGACG 60.447 44.000 0.00 0.00 38.23 4.18
648 649 5.447279 CGGGATAGTTTGCAATACAACAGAC 60.447 44.000 0.00 0.00 38.23 3.51
649 650 4.634004 CGGGATAGTTTGCAATACAACAGA 59.366 41.667 0.00 0.00 38.23 3.41
650 651 4.730613 GCGGGATAGTTTGCAATACAACAG 60.731 45.833 0.00 0.00 38.23 3.16
651 652 3.127895 GCGGGATAGTTTGCAATACAACA 59.872 43.478 0.00 0.00 38.23 3.33
652 653 3.488553 GGCGGGATAGTTTGCAATACAAC 60.489 47.826 0.00 0.00 38.23 3.32
653 654 2.685897 GGCGGGATAGTTTGCAATACAA 59.314 45.455 0.00 0.00 36.13 2.41
654 655 2.092646 AGGCGGGATAGTTTGCAATACA 60.093 45.455 0.00 0.00 0.00 2.29
655 656 2.572290 AGGCGGGATAGTTTGCAATAC 58.428 47.619 0.00 1.64 0.00 1.89
656 657 3.134985 TGTAGGCGGGATAGTTTGCAATA 59.865 43.478 0.00 0.00 0.00 1.90
657 658 2.092646 TGTAGGCGGGATAGTTTGCAAT 60.093 45.455 0.00 0.00 0.00 3.56
658 659 1.279558 TGTAGGCGGGATAGTTTGCAA 59.720 47.619 0.00 0.00 0.00 4.08
659 660 0.906066 TGTAGGCGGGATAGTTTGCA 59.094 50.000 0.00 0.00 0.00 4.08
660 661 1.583054 CTGTAGGCGGGATAGTTTGC 58.417 55.000 0.00 0.00 0.00 3.68
661 662 1.583054 GCTGTAGGCGGGATAGTTTG 58.417 55.000 0.00 0.00 0.00 2.93
666 667 2.363711 CGCAAGCTGTAGGCGGGATA 62.364 60.000 12.72 0.00 46.46 2.59
667 668 3.740128 CGCAAGCTGTAGGCGGGAT 62.740 63.158 12.72 0.00 46.46 3.85
668 669 4.451150 CGCAAGCTGTAGGCGGGA 62.451 66.667 12.72 0.00 46.46 5.14
672 673 2.512515 CTCCCGCAAGCTGTAGGC 60.513 66.667 0.00 0.00 42.19 3.93
673 674 2.512515 GCTCCCGCAAGCTGTAGG 60.513 66.667 0.00 0.00 39.27 3.18
695 696 2.105128 GAGGTGATGACGCTCCCG 59.895 66.667 0.00 0.00 41.14 5.14
696 697 1.945354 TTCGAGGTGATGACGCTCCC 61.945 60.000 0.00 0.00 0.00 4.30
697 698 0.103208 ATTCGAGGTGATGACGCTCC 59.897 55.000 0.00 0.00 0.00 4.70
698 699 1.066303 AGATTCGAGGTGATGACGCTC 59.934 52.381 0.00 0.00 0.00 5.03
699 700 1.107114 AGATTCGAGGTGATGACGCT 58.893 50.000 0.00 0.00 0.00 5.07
700 701 1.590238 CAAGATTCGAGGTGATGACGC 59.410 52.381 0.00 0.00 0.00 5.19
701 702 3.150848 TCAAGATTCGAGGTGATGACG 57.849 47.619 0.00 0.00 0.00 4.35
702 703 7.539712 TTTATTCAAGATTCGAGGTGATGAC 57.460 36.000 0.00 0.00 0.00 3.06
703 704 8.560355 TTTTTATTCAAGATTCGAGGTGATGA 57.440 30.769 0.00 0.00 0.00 2.92
792 793 3.568430 TCAGTAGTACACCACTGACAGTG 59.432 47.826 25.83 25.83 44.70 3.66
793 794 3.828921 TCAGTAGTACACCACTGACAGT 58.171 45.455 16.53 1.07 44.70 3.55
798 799 4.038763 TGACCTTTCAGTAGTACACCACTG 59.961 45.833 13.30 13.30 42.88 3.66
799 800 4.220724 TGACCTTTCAGTAGTACACCACT 58.779 43.478 2.52 0.00 41.62 4.00
800 801 4.595762 TGACCTTTCAGTAGTACACCAC 57.404 45.455 2.52 0.00 0.00 4.16
801 802 5.129815 AGTTTGACCTTTCAGTAGTACACCA 59.870 40.000 2.52 0.00 31.71 4.17
803 804 7.381678 CAGTAGTTTGACCTTTCAGTAGTACAC 59.618 40.741 2.52 0.00 32.06 2.90
804 805 7.431249 CAGTAGTTTGACCTTTCAGTAGTACA 58.569 38.462 2.52 0.00 32.06 2.90
805 806 6.365518 GCAGTAGTTTGACCTTTCAGTAGTAC 59.634 42.308 0.00 0.00 31.71 2.73
806 807 6.041182 TGCAGTAGTTTGACCTTTCAGTAGTA 59.959 38.462 0.00 0.00 31.71 1.82
807 808 5.163343 TGCAGTAGTTTGACCTTTCAGTAGT 60.163 40.000 0.00 0.00 31.71 2.73
808 809 5.297547 TGCAGTAGTTTGACCTTTCAGTAG 58.702 41.667 0.00 0.00 31.71 2.57
809 810 5.284861 TGCAGTAGTTTGACCTTTCAGTA 57.715 39.130 0.00 0.00 31.71 2.74
810 811 4.150897 TGCAGTAGTTTGACCTTTCAGT 57.849 40.909 0.00 0.00 31.71 3.41
811 812 5.499139 TTTGCAGTAGTTTGACCTTTCAG 57.501 39.130 0.00 0.00 31.71 3.02
824 827 4.874970 AGGAGCATTTGTTTTTGCAGTAG 58.125 39.130 0.00 0.00 41.35 2.57
831 834 9.558396 TCAATTATTGAAGGAGCATTTGTTTTT 57.442 25.926 5.03 0.00 36.59 1.94
877 880 0.679640 AGGAGAGACAGAGCGTGGAG 60.680 60.000 0.00 0.00 0.00 3.86
878 881 0.251386 AAGGAGAGACAGAGCGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
885 888 4.314522 AGACAGATCAAGGAGAGACAGA 57.685 45.455 0.00 0.00 0.00 3.41
899 902 7.256619 GGGATCAAATTCCAGATCTAGACAGAT 60.257 40.741 0.00 0.00 39.73 2.90
901 904 6.183361 TGGGATCAAATTCCAGATCTAGACAG 60.183 42.308 0.00 0.00 40.32 3.51
933 960 2.177580 CAAGTGTTGGGACGCGTGT 61.178 57.895 20.70 0.00 39.75 4.49
937 964 2.935955 CGTCAAGTGTTGGGACGC 59.064 61.111 0.00 0.00 46.25 5.19
939 966 2.258726 GGCCGTCAAGTGTTGGGAC 61.259 63.158 0.00 0.00 0.00 4.46
940 967 2.112297 GGCCGTCAAGTGTTGGGA 59.888 61.111 0.00 0.00 0.00 4.37
941 968 3.353836 CGGCCGTCAAGTGTTGGG 61.354 66.667 19.50 0.00 0.00 4.12
943 970 2.590575 ACCGGCCGTCAAGTGTTG 60.591 61.111 26.12 7.62 0.00 3.33
944 971 2.590575 CACCGGCCGTCAAGTGTT 60.591 61.111 26.12 0.00 0.00 3.32
945 972 3.542676 TCACCGGCCGTCAAGTGT 61.543 61.111 26.12 10.86 0.00 3.55
947 974 4.657824 CGTCACCGGCCGTCAAGT 62.658 66.667 26.12 12.13 0.00 3.16
957 984 1.081376 GTCAGTCTCACCGTCACCG 60.081 63.158 0.00 0.00 0.00 4.94
958 985 1.081376 CGTCAGTCTCACCGTCACC 60.081 63.158 0.00 0.00 0.00 4.02
959 986 1.729838 GCGTCAGTCTCACCGTCAC 60.730 63.158 0.00 0.00 0.00 3.67
987 1014 4.119363 GCCATGGCTCCTCCTGCA 62.119 66.667 29.98 0.00 38.26 4.41
1032 1062 2.352805 CCCACCACCTTGAGGAGC 59.647 66.667 3.59 0.00 38.94 4.70
1091 1121 1.392510 GGTCATTGTCGAAGTTACGCC 59.607 52.381 0.00 0.00 0.00 5.68
1092 1122 2.092211 CAGGTCATTGTCGAAGTTACGC 59.908 50.000 0.00 0.00 0.00 4.42
1095 1125 2.333926 CGCAGGTCATTGTCGAAGTTA 58.666 47.619 0.00 0.00 0.00 2.24
1182 1212 2.915659 AGGCGGACCTCGTTGTCA 60.916 61.111 8.82 0.00 46.34 3.58
1284 1317 2.586425 CAAGAACAAAGAAGAGGGCCA 58.414 47.619 6.18 0.00 0.00 5.36
1339 1373 2.514803 AGACAAGAATTTTGGACGGGG 58.485 47.619 0.00 0.00 0.00 5.73
1340 1374 5.699097 TTAAGACAAGAATTTTGGACGGG 57.301 39.130 0.00 0.00 0.00 5.28
1341 1375 8.487176 CAAATTTAAGACAAGAATTTTGGACGG 58.513 33.333 0.00 0.00 32.35 4.79
1342 1376 9.030301 ACAAATTTAAGACAAGAATTTTGGACG 57.970 29.630 0.00 0.00 33.39 4.79
1352 1386 9.582431 CCGTATCTAGACAAATTTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
1360 1394 9.139734 AGGTACATCCGTATCTAGACAAATTTA 57.860 33.333 0.00 0.00 37.29 1.40
1361 1395 8.019656 AGGTACATCCGTATCTAGACAAATTT 57.980 34.615 0.00 0.00 37.29 1.82
1362 1396 7.598759 AGGTACATCCGTATCTAGACAAATT 57.401 36.000 0.00 0.00 37.29 1.82
1363 1397 8.701908 TTAGGTACATCCGTATCTAGACAAAT 57.298 34.615 0.00 0.00 41.33 2.32
1365 1399 9.224267 GTATTAGGTACATCCGTATCTAGACAA 57.776 37.037 0.00 0.00 41.33 3.18
1366 1400 7.547019 CGTATTAGGTACATCCGTATCTAGACA 59.453 40.741 0.00 0.00 41.33 3.41
1367 1401 7.547370 ACGTATTAGGTACATCCGTATCTAGAC 59.453 40.741 0.00 0.00 41.33 2.59
1369 1403 7.547019 TCACGTATTAGGTACATCCGTATCTAG 59.453 40.741 0.00 0.00 41.33 2.43
1372 1406 6.148480 AGTCACGTATTAGGTACATCCGTATC 59.852 42.308 0.00 0.00 41.99 2.24
1373 1407 6.000219 AGTCACGTATTAGGTACATCCGTAT 59.000 40.000 0.00 0.00 41.99 3.06
1374 1408 5.368145 AGTCACGTATTAGGTACATCCGTA 58.632 41.667 0.00 0.00 41.99 4.02
1376 1410 4.825546 AGTCACGTATTAGGTACATCCG 57.174 45.455 0.00 0.00 41.99 4.18
1377 1411 6.140303 TCAAGTCACGTATTAGGTACATCC 57.860 41.667 0.00 0.00 32.61 3.51
1378 1412 8.566260 ACTATCAAGTCACGTATTAGGTACATC 58.434 37.037 0.00 0.00 32.61 3.06
1379 1413 8.461249 ACTATCAAGTCACGTATTAGGTACAT 57.539 34.615 0.00 0.00 32.61 2.29
1381 1415 8.400947 TCAACTATCAAGTCACGTATTAGGTAC 58.599 37.037 0.00 0.00 33.75 3.34
1383 1417 7.400599 TCAACTATCAAGTCACGTATTAGGT 57.599 36.000 0.00 0.00 33.75 3.08
1384 1418 9.395707 GTATCAACTATCAAGTCACGTATTAGG 57.604 37.037 0.00 0.00 33.75 2.69
1385 1419 9.946165 TGTATCAACTATCAAGTCACGTATTAG 57.054 33.333 0.00 0.00 33.75 1.73
1387 1421 9.464714 GATGTATCAACTATCAAGTCACGTATT 57.535 33.333 0.00 0.00 33.75 1.89
1390 1424 6.273825 GGATGTATCAACTATCAAGTCACGT 58.726 40.000 0.00 0.00 33.75 4.49
1391 1425 5.399596 CGGATGTATCAACTATCAAGTCACG 59.600 44.000 0.00 0.00 33.75 4.35
1392 1426 6.273825 ACGGATGTATCAACTATCAAGTCAC 58.726 40.000 0.00 0.00 33.75 3.67
1393 1427 6.465439 ACGGATGTATCAACTATCAAGTCA 57.535 37.500 0.00 0.00 33.75 3.41
1408 1442 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1409 1443 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1410 1444 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1411 1445 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1412 1446 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1413 1447 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
1421 1455 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1422 1456 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1423 1457 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1424 1458 8.359642 TGTCCCAAAATTCTTGTCTTAGATTTG 58.640 33.333 0.00 0.00 29.84 2.32
1427 1461 7.461749 TCTGTCCCAAAATTCTTGTCTTAGAT 58.538 34.615 0.00 0.00 0.00 1.98
1428 1462 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
1429 1463 6.936900 TCTCTGTCCCAAAATTCTTGTCTTAG 59.063 38.462 0.00 0.00 0.00 2.18
1431 1465 5.694995 TCTCTGTCCCAAAATTCTTGTCTT 58.305 37.500 0.00 0.00 0.00 3.01
1432 1466 5.072329 TCTCTCTGTCCCAAAATTCTTGTCT 59.928 40.000 0.00 0.00 0.00 3.41
1433 1467 5.308825 TCTCTCTGTCCCAAAATTCTTGTC 58.691 41.667 0.00 0.00 0.00 3.18
1434 1468 5.163152 ACTCTCTCTGTCCCAAAATTCTTGT 60.163 40.000 0.00 0.00 0.00 3.16
1435 1469 5.312079 ACTCTCTCTGTCCCAAAATTCTTG 58.688 41.667 0.00 0.00 0.00 3.02
1436 1470 5.574970 ACTCTCTCTGTCCCAAAATTCTT 57.425 39.130 0.00 0.00 0.00 2.52
1437 1471 6.882768 ATACTCTCTCTGTCCCAAAATTCT 57.117 37.500 0.00 0.00 0.00 2.40
1438 1472 8.207545 ACATATACTCTCTCTGTCCCAAAATTC 58.792 37.037 0.00 0.00 0.00 2.17
1439 1473 8.095452 ACATATACTCTCTCTGTCCCAAAATT 57.905 34.615 0.00 0.00 0.00 1.82
1440 1474 7.682787 ACATATACTCTCTCTGTCCCAAAAT 57.317 36.000 0.00 0.00 0.00 1.82
1441 1475 7.496346 AACATATACTCTCTCTGTCCCAAAA 57.504 36.000 0.00 0.00 0.00 2.44
1442 1476 7.038302 ACAAACATATACTCTCTCTGTCCCAAA 60.038 37.037 0.00 0.00 0.00 3.28
1443 1477 6.440647 ACAAACATATACTCTCTCTGTCCCAA 59.559 38.462 0.00 0.00 0.00 4.12
1444 1478 5.958380 ACAAACATATACTCTCTCTGTCCCA 59.042 40.000 0.00 0.00 0.00 4.37
1445 1479 6.127310 ACACAAACATATACTCTCTCTGTCCC 60.127 42.308 0.00 0.00 0.00 4.46
1446 1480 6.868622 ACACAAACATATACTCTCTCTGTCC 58.131 40.000 0.00 0.00 0.00 4.02
1447 1481 7.640630 CGTACACAAACATATACTCTCTCTGTC 59.359 40.741 0.00 0.00 0.00 3.51
1448 1482 7.473366 CGTACACAAACATATACTCTCTCTGT 58.527 38.462 0.00 0.00 0.00 3.41
1449 1483 6.415280 GCGTACACAAACATATACTCTCTCTG 59.585 42.308 0.00 0.00 0.00 3.35
1450 1484 6.496571 GCGTACACAAACATATACTCTCTCT 58.503 40.000 0.00 0.00 0.00 3.10
1451 1485 5.395778 CGCGTACACAAACATATACTCTCTC 59.604 44.000 0.00 0.00 0.00 3.20
1452 1486 5.065602 TCGCGTACACAAACATATACTCTCT 59.934 40.000 5.77 0.00 0.00 3.10
1453 1487 5.268544 TCGCGTACACAAACATATACTCTC 58.731 41.667 5.77 0.00 0.00 3.20
1454 1488 5.239359 TCGCGTACACAAACATATACTCT 57.761 39.130 5.77 0.00 0.00 3.24
1455 1489 5.740569 TCTTCGCGTACACAAACATATACTC 59.259 40.000 5.77 0.00 0.00 2.59
1456 1490 5.643664 TCTTCGCGTACACAAACATATACT 58.356 37.500 5.77 0.00 0.00 2.12
1461 1495 4.927425 AGTTATCTTCGCGTACACAAACAT 59.073 37.500 5.77 0.00 0.00 2.71
1553 1587 9.260002 TCAAAGCTTCCAAGAAAAATTTATCAC 57.740 29.630 0.00 0.00 0.00 3.06
1558 1592 7.420002 GCATTCAAAGCTTCCAAGAAAAATTT 58.580 30.769 0.00 0.00 0.00 1.82
1560 1594 5.178067 CGCATTCAAAGCTTCCAAGAAAAAT 59.822 36.000 0.00 0.00 0.00 1.82
1598 1632 5.095490 CCTTGTCATAAGGAAAATCGTTGC 58.905 41.667 0.00 0.00 39.81 4.17
1610 1644 7.440523 AGTAAAGACTTTGCCTTGTCATAAG 57.559 36.000 10.80 0.00 35.81 1.73
1641 1675 8.257306 ACAACACTTCATAAACAATGTTCCTTT 58.743 29.630 0.00 0.00 36.89 3.11
1642 1676 7.781056 ACAACACTTCATAAACAATGTTCCTT 58.219 30.769 0.00 0.00 36.89 3.36
1685 1719 2.802816 CAACTGACAAGGAGGAACTTCG 59.197 50.000 0.00 0.00 40.41 3.79
1699 1733 6.223852 TCTTACCTGAAATGAGACAACTGAC 58.776 40.000 0.00 0.00 0.00 3.51
1704 1738 8.690203 TTGAATTCTTACCTGAAATGAGACAA 57.310 30.769 7.05 0.00 0.00 3.18
1705 1739 8.156820 TCTTGAATTCTTACCTGAAATGAGACA 58.843 33.333 7.05 0.00 0.00 3.41
1706 1740 8.553459 TCTTGAATTCTTACCTGAAATGAGAC 57.447 34.615 7.05 0.00 0.00 3.36
1725 1759 6.601332 AGGGTACATTTTGACTCTTCTTGAA 58.399 36.000 0.00 0.00 0.00 2.69
1726 1760 6.187727 AGGGTACATTTTGACTCTTCTTGA 57.812 37.500 0.00 0.00 0.00 3.02
1753 1787 4.079253 GGAAGGAATCTGCAAACAACCTA 58.921 43.478 0.00 0.00 0.00 3.08
1759 1793 3.766051 AGAATGGGAAGGAATCTGCAAAC 59.234 43.478 0.00 0.00 0.00 2.93
1770 1804 6.840780 ACAAGAACAATTAGAATGGGAAGG 57.159 37.500 0.00 0.00 0.00 3.46
1775 1809 9.092876 GAGAGAGTACAAGAACAATTAGAATGG 57.907 37.037 0.00 0.00 0.00 3.16
1798 1832 5.875224 TGAGAACATACATTTTGTGGGAGA 58.125 37.500 0.00 0.00 0.00 3.71
1820 1854 6.634436 GCGCTCAATTATTTTTCTGGAGTATG 59.366 38.462 0.00 0.00 0.00 2.39
1821 1855 6.318648 TGCGCTCAATTATTTTTCTGGAGTAT 59.681 34.615 9.73 0.00 0.00 2.12
1827 1861 4.324402 GTGGTGCGCTCAATTATTTTTCTG 59.676 41.667 9.73 0.00 0.00 3.02
1923 1958 6.376978 CCAGTAAAGAAAAAGATGCTGACAG 58.623 40.000 0.00 0.00 0.00 3.51
1928 1963 4.998051 TCCCCAGTAAAGAAAAAGATGCT 58.002 39.130 0.00 0.00 0.00 3.79
1942 1977 2.642154 TTTTGCGAAGTTCCCCAGTA 57.358 45.000 0.00 0.00 0.00 2.74
1991 2026 0.034756 ACAGTGTGCAGCGAATGGTA 59.965 50.000 0.00 0.00 0.00 3.25
1992 2027 0.034756 TACAGTGTGCAGCGAATGGT 59.965 50.000 5.88 0.00 0.00 3.55
2013 2048 7.102346 CCAAGATCAAGATAGACTCTGTTGTT 58.898 38.462 0.00 0.00 33.29 2.83
2014 2049 6.212388 ACCAAGATCAAGATAGACTCTGTTGT 59.788 38.462 0.00 0.00 33.29 3.32
2015 2050 6.638610 ACCAAGATCAAGATAGACTCTGTTG 58.361 40.000 0.00 0.00 33.29 3.33
2022 2057 6.098409 TGTTAGGGACCAAGATCAAGATAGAC 59.902 42.308 0.00 0.00 0.00 2.59
2031 2066 3.600388 CACACTGTTAGGGACCAAGATC 58.400 50.000 0.00 0.00 0.00 2.75
2051 2086 5.818678 ACTGTAAAGACTGTACCAATCCA 57.181 39.130 0.15 0.00 36.10 3.41
2089 2124 6.656693 AGCAGCATTATTGTCTATCATAACCC 59.343 38.462 0.00 0.00 0.00 4.11
2144 2179 4.518970 GGCTAAATGTTTGGAAGTGTCTCA 59.481 41.667 0.00 0.00 0.00 3.27
2167 2202 6.157211 AGTTCCGTTGATCTGTTAGTACTTG 58.843 40.000 0.00 0.00 0.00 3.16
2523 2558 5.702065 TGTAGATTAGTTTGGCCATGGTA 57.298 39.130 14.67 0.00 0.00 3.25
3572 3652 2.105649 TGTTGAGCTTGGATGTGTGGTA 59.894 45.455 0.00 0.00 0.00 3.25
3592 3672 6.755141 CCAAGATAATCAGGAATGTGCTTTTG 59.245 38.462 0.00 0.00 0.00 2.44
3930 4591 1.185315 AACTTTGGCTTGTGCACAGT 58.815 45.000 20.59 9.74 41.91 3.55
3984 4645 5.471556 AATTTTCACTGGCATGACAATGA 57.528 34.783 9.02 9.02 35.67 2.57
4101 5106 3.152341 CCCTTGCACTTCAGAGTTTGAT 58.848 45.455 0.00 0.00 35.27 2.57
4209 5782 0.170339 GTGCCCTTATGCGGTTCAAC 59.830 55.000 0.00 0.00 0.00 3.18
4392 5965 3.116300 GCTAGCGACGAGAATTTCATCA 58.884 45.455 0.00 0.00 0.00 3.07
4414 5987 0.972471 CCCCCAAGGTTGCCATCTTC 60.972 60.000 0.00 0.00 0.00 2.87
4470 6043 0.036388 TGGGTGACTCCAATCGCTTC 60.036 55.000 0.00 0.00 38.11 3.86
4630 6209 3.118884 GGAGCGTTAAGATACCTCAACCA 60.119 47.826 0.00 0.00 0.00 3.67
4661 6240 4.269183 ACTATTGGGAATCGTTGCATCAA 58.731 39.130 0.00 0.00 0.00 2.57
4853 6433 5.888412 AACGCATTTTGACAAATCAAGAC 57.112 34.783 0.50 0.00 45.54 3.01
5031 6611 4.143618 GCGCCAAATACTTTCGTTTTTCTG 60.144 41.667 0.00 0.00 0.00 3.02
5056 6639 0.586802 GAACACTCCACTTTGGCGAC 59.413 55.000 0.00 0.00 37.47 5.19
5059 6642 2.427095 ACTTTGAACACTCCACTTTGGC 59.573 45.455 0.00 0.00 37.47 4.52
5072 6655 8.371770 AGAGTGACTTGAAGATAACTTTGAAC 57.628 34.615 0.00 0.00 36.39 3.18
5103 6686 2.278332 AAACTTCAGGGAGCTGTTCC 57.722 50.000 1.35 1.35 46.00 3.62
5124 6707 4.401925 ACTTGAGTTTATTGAAGCTGCCT 58.598 39.130 0.00 0.00 0.00 4.75
5440 7092 5.305585 CAGCTTTCTAAGGTTACCAAGACA 58.694 41.667 3.51 0.00 37.06 3.41
5473 7125 5.419542 TGTAATATTGCAGTGTGAGAGGTC 58.580 41.667 1.68 0.00 0.00 3.85
5607 7262 1.005867 AGCATGCACGCCAAAAAGG 60.006 52.632 21.98 0.00 41.84 3.11
5751 7406 6.462347 GGAGAGTCAAGTCTTGAAGTCTTTCT 60.462 42.308 21.53 15.21 42.15 2.52
6049 7707 1.552337 AGCTCTTGGAAGAAGCGATCA 59.448 47.619 0.00 0.00 35.64 2.92
6050 7708 2.307934 AGCTCTTGGAAGAAGCGATC 57.692 50.000 0.00 0.00 35.64 3.69
6207 7871 0.464013 CAGAGAGATGGCCAAGCAGG 60.464 60.000 10.96 0.00 41.84 4.85
6613 8277 6.459670 TGATTCGCACTACCTCTGTAAATA 57.540 37.500 0.00 0.00 0.00 1.40
7010 8674 6.152831 GCTATATTTTGGGAAACAAGGTGTCT 59.847 38.462 0.00 0.00 40.82 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.