AutoCloner

Multiple sequence alignment - TraesCS3B01G593600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G593600	chr3B	100.000	2879	0	0	1	2879	817257891	817260769	0.000000e+00	5317.0
1	TraesCS3B01G593600	chr3B	98.817	930	11	0	5	934	191135370	191136299	0.000000e+00	1657.0
2	TraesCS3B01G593600	chr3B	92.194	948	67	4	975	1919	817456143	817455200	0.000000e+00	1334.0
3	TraesCS3B01G593600	chr3B	86.272	947	65	25	1914	2842	817454424	817453525	0.000000e+00	968.0
4	TraesCS3B01G593600	chr2B	99.359	936	5	1	5	940	78078101	78079035	0.000000e+00	1694.0
5	TraesCS3B01G593600	chr3A	99.141	931	8	0	5	935	145613882	145612952	0.000000e+00	1676.0
6	TraesCS3B01G593600	chr3A	88.746	933	99	4	5	932	696293196	696294127	0.000000e+00	1136.0
7	TraesCS3B01G593600	chr3A	91.288	792	62	4	1587	2377	739971558	739972343	0.000000e+00	1074.0
8	TraesCS3B01G593600	chr3A	92.822	404	20	4	968	1368	739971157	739971554	6.920000e-161	577.0
9	TraesCS3B01G593600	chr5B	98.926	931	10	0	5	935	611689754	611688824	0.000000e+00	1664.0
10	TraesCS3B01G593600	chr4A	99.442	896	5	0	40	935	641392969	641393864	0.000000e+00	1628.0
11	TraesCS3B01G593600	chr4A	86.747	83	11	0	2420	2502	690411353	690411435	3.050000e-15	93.5
12	TraesCS3B01G593600	chr1B	93.670	932	58	1	5	935	679603774	679602843	0.000000e+00	1393.0
13	TraesCS3B01G593600	chr1B	77.586	174	17	15	2334	2507	87996850	87996699	5.110000e-13	86.1
14	TraesCS3B01G593600	chr3D	90.117	1022	89	7	1359	2377	607402820	607403832	0.000000e+00	1317.0
15	TraesCS3B01G593600	chr3D	93.160	424	22	4	934	1353	607401685	607402105	1.470000e-172	616.0
16	TraesCS3B01G593600	chr3D	88.739	222	19	3	2661	2879	607404007	607404225	1.700000e-67	267.0
17	TraesCS3B01G593600	chr3D	83.436	163	25	2	2471	2631	607403845	607404007	1.790000e-32	150.0
18	TraesCS3B01G593600	chr3D	90.588	85	8	0	2418	2502	609076836	609076752	2.340000e-21	113.0
19	TraesCS3B01G593600	chr3D	87.059	85	8	2	2421	2502	302927873	302927957	3.050000e-15	93.5
20	TraesCS3B01G593600	chr2A	91.113	934	78	5	5	934	90582699	90581767	0.000000e+00	1260.0
21	TraesCS3B01G593600	chr1D	87.073	936	118	2	5	937	75886169	75885234	0.000000e+00	1055.0
22	TraesCS3B01G593600	chr1D	89.831	59	6	0	2334	2392	53956907	53956849	3.080000e-10	76.8
23	TraesCS3B01G593600	chr2D	92.683	82	6	0	2420	2501	234759853	234759772	5.040000e-23	119.0
24	TraesCS3B01G593600	chr6D	90.588	85	8	0	2418	2502	392273136	392273220	2.340000e-21	113.0
25	TraesCS3B01G593600	chr6B	89.412	85	9	0	2418	2502	277616212	277616296	1.090000e-19	108.0
26	TraesCS3B01G593600	chr6B	90.385	52	3	2	2337	2386	562098559	562098610	1.850000e-07	67.6
27	TraesCS3B01G593600	chr6A	87.778	90	10	1	2418	2507	578721647	578721735	1.410000e-18	104.0
28	TraesCS3B01G593600	chr7A	86.747	83	11	0	2420	2502	94784778	94784860	3.050000e-15	93.5
29	TraesCS3B01G593600	chr5A	84.783	92	14	0	2421	2512	35260309	35260218	3.050000e-15	93.5
30	TraesCS3B01G593600	chr7D	78.571	168	13	9	2337	2502	34757018	34756872	3.950000e-14	89.8
31	TraesCS3B01G593600	chr7B	84.483	58	6	3	2339	2394	184914998	184914942	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G593600	chr3B	817257891	817260769	2878	False	5317.0	5317	100.000	1	2879	1	chr3B.!!$F2	2878
1	TraesCS3B01G593600	chr3B	191135370	191136299	929	False	1657.0	1657	98.817	5	934	1	chr3B.!!$F1	929
2	TraesCS3B01G593600	chr3B	817453525	817456143	2618	True	1151.0	1334	89.233	975	2842	2	chr3B.!!$R1	1867
3	TraesCS3B01G593600	chr2B	78078101	78079035	934	False	1694.0	1694	99.359	5	940	1	chr2B.!!$F1	935
4	TraesCS3B01G593600	chr3A	145612952	145613882	930	True	1676.0	1676	99.141	5	935	1	chr3A.!!$R1	930
5	TraesCS3B01G593600	chr3A	696293196	696294127	931	False	1136.0	1136	88.746	5	932	1	chr3A.!!$F1	927
6	TraesCS3B01G593600	chr3A	739971157	739972343	1186	False	825.5	1074	92.055	968	2377	2	chr3A.!!$F2	1409
7	TraesCS3B01G593600	chr5B	611688824	611689754	930	True	1664.0	1664	98.926	5	935	1	chr5B.!!$R1	930
8	TraesCS3B01G593600	chr4A	641392969	641393864	895	False	1628.0	1628	99.442	40	935	1	chr4A.!!$F1	895
9	TraesCS3B01G593600	chr1B	679602843	679603774	931	True	1393.0	1393	93.670	5	935	1	chr1B.!!$R2	930
10	TraesCS3B01G593600	chr3D	607401685	607404225	2540	False	587.5	1317	88.863	934	2879	4	chr3D.!!$F2	1945
11	TraesCS3B01G593600	chr2A	90581767	90582699	932	True	1260.0	1260	91.113	5	934	1	chr2A.!!$R1	929
12	TraesCS3B01G593600	chr1D	75885234	75886169	935	True	1055.0	1055	87.073	5	937	1	chr1D.!!$R2	932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1011	1017	3.533606	ACCAGATCGATGGAAGAAGTG	57.466	47.619	12.02	0.0	43.57	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2119	3626	0.178068	ACCCGTTGCTATCGCTGATT	59.822	50.0	0.0	0.0	36.97	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1009	1015	4.697352	ACAAAACCAGATCGATGGAAGAAG	59.303	41.667	12.02	1.04	43.57	2.85
1010	1016	4.559862	AAACCAGATCGATGGAAGAAGT	57.440	40.909	12.02	0.00	43.57	3.01
1011	1017	3.533606	ACCAGATCGATGGAAGAAGTG	57.466	47.619	12.02	0.00	43.57	3.16
1092	1098	1.737735	CATGAAGGACGACGCTGCA	60.738	57.895	0.00	0.00	0.00	4.41
1100	1106	2.049156	CGACGCTGCACTCTTCCA	60.049	61.111	0.00	0.00	0.00	3.53
1180	1186	4.416738	GCTGGCCAGGAGACCACC	62.417	72.222	33.46	10.92	0.00	4.61
1339	1351	0.397941	CTCCTTCTTGTCCACTGCCA	59.602	55.000	0.00	0.00	0.00	4.92
1392	2110	2.661840	TTTCGCACCGTGGCCTTGTA	62.662	55.000	3.32	0.00	0.00	2.41
1422	2140	3.849911	CCTCTTCAAAGCTCGTGATACA	58.150	45.455	1.18	0.00	0.00	2.29
1430	2148	0.807667	GCTCGTGATACACCAGGCTG	60.808	60.000	7.75	7.75	0.00	4.85
1575	2293	2.584391	AAGCACCGACTGTCCCTCC	61.584	63.158	1.55	0.00	0.00	4.30
1583	2301	0.461961	GACTGTCCCTCCGAAGATGG	59.538	60.000	0.00	0.00	0.00	3.51
1614	2332	2.045926	GTGCCGCTGATCAACCCT	60.046	61.111	0.00	0.00	0.00	4.34
1778	2496	2.992273	GCGATGCCATTGTGTGCCA	61.992	57.895	0.00	0.00	0.00	4.92
1846	2564	6.647067	CCTCATTAATATGAACGGAAGGACTC	59.353	42.308	0.00	0.00	40.17	3.36
1847	2565	7.361457	TCATTAATATGAACGGAAGGACTCT	57.639	36.000	0.00	0.00	37.83	3.24
1848	2566	7.210174	TCATTAATATGAACGGAAGGACTCTG	58.790	38.462	0.00	0.00	37.83	3.35
1849	2567	4.408182	AATATGAACGGAAGGACTCTGG	57.592	45.455	0.00	0.00	34.34	3.86
1872	2590	1.965754	ATCTCCTGCACGAAGCTCCC	61.966	60.000	6.22	0.00	45.94	4.30
1875	2593	1.302832	CCTGCACGAAGCTCCCTTT	60.303	57.895	6.22	0.00	45.94	3.11
1877	2595	1.610624	CCTGCACGAAGCTCCCTTTTA	60.611	52.381	6.22	0.00	45.94	1.52
1879	2597	0.448197	GCACGAAGCTCCCTTTTAGC	59.552	55.000	0.00	0.00	41.15	3.09
1880	2598	1.808411	CACGAAGCTCCCTTTTAGCA	58.192	50.000	0.00	0.00	42.62	3.49
1883	2601	2.151202	CGAAGCTCCCTTTTAGCACAA	58.849	47.619	0.00	0.00	42.62	3.33
1884	2602	2.552315	CGAAGCTCCCTTTTAGCACAAA	59.448	45.455	0.00	0.00	42.62	2.83
1895	2613	5.298276	CCTTTTAGCACAAACTTCCACTACA	59.702	40.000	0.00	0.00	0.00	2.74
1896	2614	6.183360	CCTTTTAGCACAAACTTCCACTACAA	60.183	38.462	0.00	0.00	0.00	2.41
1921	3420	2.837591	TCAACCATGCCTTACTCTAGCA	59.162	45.455	0.00	0.00	41.50	3.49
1927	3426	3.594603	TGCCTTACTCTAGCAGTCAAC	57.405	47.619	0.00	0.00	36.43	3.18
1930	3429	2.753452	CCTTACTCTAGCAGTCAACGGA	59.247	50.000	0.00	0.00	36.43	4.69
1932	3431	4.142138	CCTTACTCTAGCAGTCAACGGAAT	60.142	45.833	0.00	0.00	36.43	3.01
1940	3439	3.933155	CAGTCAACGGAATGCTATCAC	57.067	47.619	0.00	0.00	31.77	3.06
1952	3451	1.415289	TGCTATCACTGCTCTGGATGG	59.585	52.381	0.00	0.00	0.00	3.51
1956	3455	1.588239	TCACTGCTCTGGATGGGAAT	58.412	50.000	0.00	0.00	0.00	3.01
1959	3458	1.918262	ACTGCTCTGGATGGGAATGAA	59.082	47.619	0.00	0.00	0.00	2.57
1960	3459	2.512896	ACTGCTCTGGATGGGAATGAAT	59.487	45.455	0.00	0.00	0.00	2.57
2001	3500	2.224769	GGGAACAACAAGAGGACCATGA	60.225	50.000	0.00	0.00	0.00	3.07
2007	3506	4.097892	ACAACAAGAGGACCATGAAAACAC	59.902	41.667	0.00	0.00	0.00	3.32
2008	3507	3.897239	ACAAGAGGACCATGAAAACACA	58.103	40.909	0.00	0.00	0.00	3.72
2013	3512	4.003648	GAGGACCATGAAAACACAGGTAG	58.996	47.826	0.00	0.00	31.57	3.18
2027	3526	3.746492	CACAGGTAGTACTTCAAAGTGGC	59.254	47.826	0.00	0.00	40.07	5.01
2055	3562	3.432252	AGTCGGACAATCAAGCTAAAACG	59.568	43.478	11.27	0.00	0.00	3.60
2079	3586	4.033709	CCTAGGAAGAGGATTCAAGGACA	58.966	47.826	1.05	0.00	39.15	4.02
2152	3659	1.079197	CGGGTGCATCTACACTGCA	60.079	57.895	0.00	0.00	46.82	4.41
2276	3783	1.822990	TCGTTTCTCGGCTTATCAGGT	59.177	47.619	0.00	0.00	40.32	4.00
2277	3784	3.018856	TCGTTTCTCGGCTTATCAGGTA	58.981	45.455	0.00	0.00	40.32	3.08
2278	3785	3.635373	TCGTTTCTCGGCTTATCAGGTAT	59.365	43.478	0.00	0.00	40.32	2.73
2279	3786	4.823442	TCGTTTCTCGGCTTATCAGGTATA	59.177	41.667	0.00	0.00	40.32	1.47
2320	3827	8.848948	TGAAATATATGCATTACACCGTTTTG	57.151	30.769	3.54	0.00	0.00	2.44
2349	3856	3.806949	TGCAAAGTACTCCCTCCATTT	57.193	42.857	0.00	0.00	0.00	2.32
2416	3923	8.500753	TGTTTGTTCACTCATTTTAGTACAGT	57.499	30.769	0.00	0.00	0.00	3.55
2417	3924	9.602568	TGTTTGTTCACTCATTTTAGTACAGTA	57.397	29.630	0.00	0.00	0.00	2.74
2462	3969	7.285629	CACTCATTTCAGTCTATACCTAGTCCA	59.714	40.741	0.00	0.00	0.00	4.02
2520	4027	4.081752	TGGAGAAAGTGTGTTGCAATTTGT	60.082	37.500	0.59	0.00	44.17	2.83
2525	4032	9.243637	GAGAAAGTGTGTTGCAATTTGTAAATA	57.756	29.630	0.59	0.00	44.17	1.40
2637	4146	5.770663	TCTCTTTATTCGATAGGGACTCCAG	59.229	44.000	0.00	0.00	41.75	3.86
2646	4155	3.462678	GGACTCCAGACGCCTCCC	61.463	72.222	0.00	0.00	0.00	4.30
2725	4237	2.814913	AAAAGGGTAAGGGCCGCGAG	62.815	60.000	8.23	0.00	0.00	5.03
2741	4253	1.262683	GCGAGTGCATATCCAAGAAGC	59.737	52.381	0.00	0.00	42.15	3.86
2749	4261	5.007136	GTGCATATCCAAGAAGCTGAAGTAC	59.993	44.000	0.00	0.00	0.00	2.73
2758	4270	2.432456	CTGAAGTACAGCGCGGCA	60.432	61.111	8.83	0.00	39.86	5.69
2803	4315	9.237846	GTCAAAGGAAAAACATAAGAAACTCAG	57.762	33.333	0.00	0.00	0.00	3.35
2813	4329	8.894768	AACATAAGAAACTCAGGAGCATATAC	57.105	34.615	0.00	0.00	0.00	1.47
2815	4331	8.654997	ACATAAGAAACTCAGGAGCATATACAT	58.345	33.333	0.00	0.00	0.00	2.29
2856	4372	5.741011	AGCTTATTATTTTCCTCACCGTCA	58.259	37.500	0.00	0.00	0.00	4.35
2867	4383	1.737793	CTCACCGTCAAGGCATAAACC	59.262	52.381	0.00	0.00	46.52	3.27
2868	4384	1.349688	TCACCGTCAAGGCATAAACCT	59.650	47.619	0.00	0.00	46.52	3.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	7.928235	CCGGCAGGAATCCTTTAAGGACTAC	62.928	52.000	16.74	6.15	43.87	2.73
854	858	1.405105	GCGCTAGGGCAATCAATGAAA	59.595	47.619	25.48	0.00	38.60	2.69
940	945	0.538118	TGTACGTAGTCCCAATGGCC	59.462	55.000	0.00	0.00	43.93	5.36
1092	1098	1.069765	CGTGGCACAGTGGAAGAGT	59.930	57.895	19.09	0.00	41.80	3.24
1100	1106	4.522689	TGCACGTCGTGGCACAGT	62.523	61.111	25.70	11.29	41.80	3.55
1172	1178	0.246910	GAAAGAGGACGGGTGGTCTC	59.753	60.000	0.00	0.00	45.35	3.36
1222	1231	4.554036	GTCCCCATCTCTGCGGCC	62.554	72.222	0.00	0.00	0.00	6.13
1255	1264	0.819259	ATAAAGCACGGCGCCATGAT	60.819	50.000	29.37	19.78	44.04	2.45
1339	1351	4.699522	GTTGAAGAGGCCGGCGGT	62.700	66.667	28.82	10.59	0.00	5.68
1354	1366	4.903010	AAGTGGCACCGCGTCGTT	62.903	61.111	15.27	0.00	0.00	3.85
1392	2110	0.946221	CTTTGAAGAGGCGCACGAGT	60.946	55.000	10.83	0.00	0.00	4.18
1430	2148	4.832608	GGATGGTCGGGTCGGCAC	62.833	72.222	0.00	0.00	30.88	5.01
1575	2293	1.153449	TAGCAACGGCCCATCTTCG	60.153	57.895	0.00	0.00	42.56	3.79
1583	2301	2.485122	GCACATGTAGCAACGGCC	59.515	61.111	13.27	0.00	42.56	6.13
1614	2332	7.148255	CCGATGATTACCACTTTGAAGAATGAA	60.148	37.037	0.00	0.00	0.00	2.57
1778	2496	1.306312	ACCCAATGTGCCATGCCAT	60.306	52.632	0.00	0.00	0.00	4.40
1846	2564	2.104859	CGTGCAGGAGATGTGCCAG	61.105	63.158	0.00	0.00	40.43	4.85
1847	2565	2.046988	CGTGCAGGAGATGTGCCA	60.047	61.111	0.00	0.00	40.43	4.92
1848	2566	1.364626	CTTCGTGCAGGAGATGTGCC	61.365	60.000	9.34	0.00	40.43	5.01
1849	2567	1.975363	GCTTCGTGCAGGAGATGTGC	61.975	60.000	9.34	6.88	42.31	4.57
1872	2590	6.371809	TGTAGTGGAAGTTTGTGCTAAAAG	57.628	37.500	0.00	0.00	0.00	2.27
1875	2593	5.676552	TCTTGTAGTGGAAGTTTGTGCTAA	58.323	37.500	0.00	0.00	0.00	3.09
1877	2595	4.130118	CTCTTGTAGTGGAAGTTTGTGCT	58.870	43.478	0.00	0.00	0.00	4.40
1879	2597	5.116180	TGACTCTTGTAGTGGAAGTTTGTG	58.884	41.667	0.00	0.00	39.07	3.33
1880	2598	5.353394	TGACTCTTGTAGTGGAAGTTTGT	57.647	39.130	0.00	0.00	39.07	2.83
1883	2601	4.163458	TGGTTGACTCTTGTAGTGGAAGTT	59.837	41.667	0.00	0.00	39.07	2.66
1884	2602	3.709653	TGGTTGACTCTTGTAGTGGAAGT	59.290	43.478	0.00	0.00	39.07	3.01
1895	2613	3.584848	AGAGTAAGGCATGGTTGACTCTT	59.415	43.478	0.00	0.00	41.77	2.85
1896	2614	3.177228	AGAGTAAGGCATGGTTGACTCT	58.823	45.455	0.00	0.00	41.77	3.24
1921	3420	3.525537	CAGTGATAGCATTCCGTTGACT	58.474	45.455	0.00	0.00	0.00	3.41
1927	3426	2.133553	CAGAGCAGTGATAGCATTCCG	58.866	52.381	0.00	0.00	0.00	4.30
1930	3429	3.496337	CCATCCAGAGCAGTGATAGCATT	60.496	47.826	0.00	0.00	0.00	3.56
1932	3431	1.415289	CCATCCAGAGCAGTGATAGCA	59.585	52.381	0.00	0.00	0.00	3.49
1940	3439	2.723322	TTCATTCCCATCCAGAGCAG	57.277	50.000	0.00	0.00	0.00	4.24
1956	3455	7.683578	CCATATCTCTAGTTGGGAATCATTCA	58.316	38.462	0.00	0.00	0.00	2.57
1968	3467	7.365117	CCTCTTGTTGTTCCCATATCTCTAGTT	60.365	40.741	0.00	0.00	0.00	2.24
1990	3489	2.443255	ACCTGTGTTTTCATGGTCCTCT	59.557	45.455	0.00	0.00	35.68	3.69
2001	3500	6.317893	CCACTTTGAAGTACTACCTGTGTTTT	59.682	38.462	0.00	0.00	37.08	2.43
2007	3506	4.273148	AGCCACTTTGAAGTACTACCTG	57.727	45.455	0.00	0.00	37.08	4.00
2008	3507	5.402997	GTAGCCACTTTGAAGTACTACCT	57.597	43.478	17.27	5.96	39.51	3.08
2013	3512	5.402997	ACTAGGTAGCCACTTTGAAGTAC	57.597	43.478	0.00	0.00	37.08	2.73
2027	3526	3.381908	AGCTTGATTGTCCGACTAGGTAG	59.618	47.826	0.00	0.00	41.99	3.18
2055	3562	4.100344	GTCCTTGAATCCTCTTCCTAGGTC	59.900	50.000	9.08	0.00	37.91	3.85
2079	3586	6.889301	TTTCTCTCAAGATGCACAATTCTT	57.111	33.333	0.00	0.00	32.48	2.52
2089	3596	2.159599	GCCGCACTTTTCTCTCAAGATG	60.160	50.000	0.00	0.00	0.00	2.90
2119	3626	0.178068	ACCCGTTGCTATCGCTGATT	59.822	50.000	0.00	0.00	36.97	2.57
2141	3648	2.130272	TCGAGGTCTGCAGTGTAGAT	57.870	50.000	14.35	0.00	0.00	1.98
2152	3659	0.613853	TCATCCCGGTTTCGAGGTCT	60.614	55.000	0.00	0.00	39.00	3.85
2320	3827	4.341235	AGGGAGTACTTTGCAAAGAAAACC	59.659	41.667	38.78	30.95	39.31	3.27
2377	3884	8.561738	AGTGAACAAACATACTTATCCGATTT	57.438	30.769	0.00	0.00	0.00	2.17
2378	3885	7.822334	TGAGTGAACAAACATACTTATCCGATT	59.178	33.333	0.00	0.00	0.00	3.34
2379	3886	7.327975	TGAGTGAACAAACATACTTATCCGAT	58.672	34.615	0.00	0.00	0.00	4.18
2381	3888	6.961359	TGAGTGAACAAACATACTTATCCG	57.039	37.500	0.00	0.00	0.00	4.18
2424	3931	9.950496	AGACTGAAATGAGTGAACAAATATACT	57.050	29.630	0.00	0.00	0.00	2.12
2429	3936	9.167311	GGTATAGACTGAAATGAGTGAACAAAT	57.833	33.333	0.00	0.00	0.00	2.32
2438	3945	7.825331	TGGACTAGGTATAGACTGAAATGAG	57.175	40.000	0.00	0.00	32.93	2.90
2527	4034	9.958180	TTAGTCAGTCATATTCATCTCCAAAAA	57.042	29.630	0.00	0.00	0.00	1.94
2562	4069	3.197265	GTGCAAACAAGGTGAGCAAAAT	58.803	40.909	0.00	0.00	36.91	1.82
2567	4074	2.514205	AATGTGCAAACAAGGTGAGC	57.486	45.000	0.00	0.00	0.00	4.26
2568	4075	4.977963	CACTAAATGTGCAAACAAGGTGAG	59.022	41.667	0.00	0.00	40.06	3.51
2569	4076	4.930963	CACTAAATGTGCAAACAAGGTGA	58.069	39.130	0.00	0.00	40.06	4.02
2609	4117	7.256012	GGAGTCCCTATCGAATAAAGAGAACAT	60.256	40.741	0.00	0.00	0.00	2.71
2623	4132	1.655329	GCGTCTGGAGTCCCTATCG	59.345	63.158	6.74	7.65	0.00	2.92
2657	4166	1.014564	GTTGTAGCTGTCTCACCGCC	61.015	60.000	0.00	0.00	0.00	6.13
2700	4209	2.605257	GGCCCTTACCCTTTTTGTCTT	58.395	47.619	0.00	0.00	0.00	3.01
2725	4237	3.944015	ACTTCAGCTTCTTGGATATGCAC	59.056	43.478	0.00	0.00	0.00	4.57
2741	4253	2.432456	TGCCGCGCTGTACTTCAG	60.432	61.111	5.56	0.00	46.12	3.02
2749	4261	3.945434	CCTTATGCTGCCGCGCTG	61.945	66.667	5.56	0.00	39.65	5.18
2757	4269	6.662414	TGACGAATTAAGTTCCTTATGCTG	57.338	37.500	0.00	0.00	33.04	4.41
2758	4270	7.148239	CCTTTGACGAATTAAGTTCCTTATGCT	60.148	37.037	0.00	0.00	33.04	3.79
2835	4351	6.458342	GCCTTGACGGTGAGGAAAATAATAAG	60.458	42.308	10.48	0.00	34.91	1.73
2841	4357	1.202879	TGCCTTGACGGTGAGGAAAAT	60.203	47.619	10.48	0.00	34.91	1.82
2846	4362	1.737793	GTTTATGCCTTGACGGTGAGG	59.262	52.381	3.39	3.39	36.09	3.86
2853	4369	4.335594	GGTGACATAGGTTTATGCCTTGAC	59.664	45.833	0.00	0.00	40.30	3.18
2856	4372	4.781934	GAGGTGACATAGGTTTATGCCTT	58.218	43.478	0.00	0.00	40.30	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.