Multiple sequence alignment - TraesCS3B01G593400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G593400 chr3B 100.000 2474 0 0 1 2474 817078662 817081135 0.000000e+00 4569
1 TraesCS3B01G593400 chr3B 97.665 985 23 0 1 985 817070140 817071124 0.000000e+00 1692
2 TraesCS3B01G593400 chr3B 94.545 990 44 8 1 985 429582607 429581623 0.000000e+00 1520
3 TraesCS3B01G593400 chr3B 94.141 990 46 10 1 985 429591126 429590144 0.000000e+00 1496
4 TraesCS3B01G593400 chr3B 93.661 978 56 5 13 985 100672337 100671361 0.000000e+00 1458
5 TraesCS3B01G593400 chr3B 95.486 288 10 3 2187 2474 757963310 757963594 8.060000e-125 457
6 TraesCS3B01G593400 chr3D 96.026 1082 42 1 987 2068 365507995 365506915 0.000000e+00 1759
7 TraesCS3B01G593400 chr4D 95.151 1093 51 2 987 2078 22537963 22536872 0.000000e+00 1724
8 TraesCS3B01G593400 chr7A 95.194 1082 47 4 987 2068 154785889 154786965 0.000000e+00 1705
9 TraesCS3B01G593400 chr7A 94.839 1085 50 6 987 2068 7722956 7724037 0.000000e+00 1688
10 TraesCS3B01G593400 chr7A 97.857 280 2 1 2195 2474 683645722 683645997 4.790000e-132 481
11 TraesCS3B01G593400 chr6A 95.102 1082 50 3 987 2068 94343153 94344231 0.000000e+00 1701
12 TraesCS3B01G593400 chr2A 94.879 1074 54 1 995 2068 34832000 34833072 0.000000e+00 1677
13 TraesCS3B01G593400 chr5A 94.659 1086 46 7 987 2068 311292674 311291597 0.000000e+00 1674
14 TraesCS3B01G593400 chr4A 94.640 1082 52 5 987 2067 522258273 522259349 0.000000e+00 1672
15 TraesCS3B01G593400 chr4A 94.296 1087 58 4 987 2072 117882596 117883679 0.000000e+00 1661
16 TraesCS3B01G593400 chr4A 97.143 280 4 1 2195 2474 716732847 716732572 1.040000e-128 470
17 TraesCS3B01G593400 chr5B 96.853 985 30 1 1 985 686168101 686169084 0.000000e+00 1646
18 TraesCS3B01G593400 chr5B 96.244 985 36 1 1 985 686160389 686161372 0.000000e+00 1613
19 TraesCS3B01G593400 chr7B 94.737 969 40 9 25 985 137214823 137213858 0.000000e+00 1496
20 TraesCS3B01G593400 chr6B 94.901 961 40 8 32 985 257313661 257314619 0.000000e+00 1495
21 TraesCS3B01G593400 chr6B 96.454 282 8 1 2195 2474 151604524 151604243 4.820000e-127 464
22 TraesCS3B01G593400 chr6B 95.270 296 9 4 2182 2474 711658811 711659104 4.820000e-127 464
23 TraesCS3B01G593400 chr1B 94.444 972 46 7 32 997 665448163 665447194 0.000000e+00 1489
24 TraesCS3B01G593400 chr1B 97.527 283 6 1 2192 2474 171263594 171263313 1.330000e-132 483
25 TraesCS3B01G593400 chr1B 97.112 277 4 1 2198 2474 429009957 429009685 4.820000e-127 464
26 TraesCS3B01G593400 chr1B 96.140 285 8 2 2190 2474 234126647 234126366 1.730000e-126 462
27 TraesCS3B01G593400 chr4B 96.786 280 4 2 2195 2474 647694649 647694923 1.730000e-126 462
28 TraesCS3B01G593400 chr3A 91.489 94 8 0 2103 2196 739805286 739805379 2.000000e-26 130
29 TraesCS3B01G593400 chr3A 96.154 78 3 0 2103 2180 739804201 739804278 7.180000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G593400 chr3B 817078662 817081135 2473 False 4569 4569 100.000 1 2474 1 chr3B.!!$F3 2473
1 TraesCS3B01G593400 chr3B 817070140 817071124 984 False 1692 1692 97.665 1 985 1 chr3B.!!$F2 984
2 TraesCS3B01G593400 chr3B 429581623 429582607 984 True 1520 1520 94.545 1 985 1 chr3B.!!$R2 984
3 TraesCS3B01G593400 chr3B 429590144 429591126 982 True 1496 1496 94.141 1 985 1 chr3B.!!$R3 984
4 TraesCS3B01G593400 chr3B 100671361 100672337 976 True 1458 1458 93.661 13 985 1 chr3B.!!$R1 972
5 TraesCS3B01G593400 chr3D 365506915 365507995 1080 True 1759 1759 96.026 987 2068 1 chr3D.!!$R1 1081
6 TraesCS3B01G593400 chr4D 22536872 22537963 1091 True 1724 1724 95.151 987 2078 1 chr4D.!!$R1 1091
7 TraesCS3B01G593400 chr7A 154785889 154786965 1076 False 1705 1705 95.194 987 2068 1 chr7A.!!$F2 1081
8 TraesCS3B01G593400 chr7A 7722956 7724037 1081 False 1688 1688 94.839 987 2068 1 chr7A.!!$F1 1081
9 TraesCS3B01G593400 chr6A 94343153 94344231 1078 False 1701 1701 95.102 987 2068 1 chr6A.!!$F1 1081
10 TraesCS3B01G593400 chr2A 34832000 34833072 1072 False 1677 1677 94.879 995 2068 1 chr2A.!!$F1 1073
11 TraesCS3B01G593400 chr5A 311291597 311292674 1077 True 1674 1674 94.659 987 2068 1 chr5A.!!$R1 1081
12 TraesCS3B01G593400 chr4A 522258273 522259349 1076 False 1672 1672 94.640 987 2067 1 chr4A.!!$F2 1080
13 TraesCS3B01G593400 chr4A 117882596 117883679 1083 False 1661 1661 94.296 987 2072 1 chr4A.!!$F1 1085
14 TraesCS3B01G593400 chr5B 686168101 686169084 983 False 1646 1646 96.853 1 985 1 chr5B.!!$F2 984
15 TraesCS3B01G593400 chr5B 686160389 686161372 983 False 1613 1613 96.244 1 985 1 chr5B.!!$F1 984
16 TraesCS3B01G593400 chr7B 137213858 137214823 965 True 1496 1496 94.737 25 985 1 chr7B.!!$R1 960
17 TraesCS3B01G593400 chr6B 257313661 257314619 958 False 1495 1495 94.901 32 985 1 chr6B.!!$F1 953
18 TraesCS3B01G593400 chr1B 665447194 665448163 969 True 1489 1489 94.444 32 997 1 chr1B.!!$R4 965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 285 0.18135 GGCTCAAGACCCGGATGATT 59.819 55.0 0.73 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2220 0.242825 CACGGGCGTTCTTCTAGTCA 59.757 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
274 285 0.181350 GGCTCAAGACCCGGATGATT 59.819 55.000 0.73 0.00 0.00 2.57
353 365 1.877443 ACCTCGGATTTGGACGTTTTG 59.123 47.619 0.00 0.00 0.00 2.44
423 435 4.154942 ACACTTTTTCATCTGAGGCCATT 58.845 39.130 5.01 0.00 0.00 3.16
458 472 1.136057 GGCCGTTTTCTAAAGTCTGCG 60.136 52.381 0.00 0.00 0.00 5.18
717 731 7.485810 TCTTTATATCAAAATCGTCCGTCTCA 58.514 34.615 0.00 0.00 0.00 3.27
783 797 9.178758 GAGGTATTCTCAATTAGGTTTCATGTT 57.821 33.333 0.00 0.00 42.02 2.71
980 995 1.164411 TCATGCCATTTTCGAGCGTT 58.836 45.000 0.00 0.00 0.00 4.84
985 1000 2.290916 TGCCATTTTCGAGCGTTAACAA 59.709 40.909 6.39 0.00 0.00 2.83
1034 1049 2.961768 GTGGACAAATGTGGCGGG 59.038 61.111 0.00 0.00 31.03 6.13
1063 1078 4.142227 TGTTAATGGAGTACGAGAAGGAGC 60.142 45.833 0.00 0.00 0.00 4.70
1169 1184 4.168101 AGTGGAAGGAGAGGTCACAATTA 58.832 43.478 0.00 0.00 0.00 1.40
1184 1202 5.398416 GTCACAATTAGAAAGAACCGCAAAC 59.602 40.000 0.00 0.00 0.00 2.93
1205 1223 4.461198 ACAAAATCATAACCCGGAGATCC 58.539 43.478 0.73 0.00 0.00 3.36
1245 1266 6.351881 GCTAATATCGATGGAGGGGTGATTTA 60.352 42.308 8.54 0.00 0.00 1.40
1246 1267 6.642733 AATATCGATGGAGGGGTGATTTAT 57.357 37.500 8.54 0.00 0.00 1.40
1330 1351 8.579863 AGGAAAGTTAGGATTTTTCAACTGATG 58.420 33.333 0.00 0.00 33.57 3.07
1882 1905 9.888878 GTTAGGAAAGTTCTGGTTGTAATAAAC 57.111 33.333 0.00 0.00 0.00 2.01
2033 2061 3.679831 GCGAAAATAAACCGCGGAA 57.320 47.368 35.90 17.45 39.54 4.30
2094 2122 9.781834 AATTATACCATTGTTGTTGTTACGATG 57.218 29.630 0.00 0.00 37.21 3.84
2095 2123 8.549338 TTATACCATTGTTGTTGTTACGATGA 57.451 30.769 0.00 0.00 38.95 2.92
2096 2124 5.103290 ACCATTGTTGTTGTTACGATGAC 57.897 39.130 0.00 0.00 38.95 3.06
2097 2125 4.576873 ACCATTGTTGTTGTTACGATGACA 59.423 37.500 0.00 0.00 38.95 3.58
2098 2126 4.909305 CCATTGTTGTTGTTACGATGACAC 59.091 41.667 0.00 0.00 38.95 3.67
2099 2127 5.277779 CCATTGTTGTTGTTACGATGACACT 60.278 40.000 0.00 0.00 38.95 3.55
2100 2128 4.787381 TGTTGTTGTTACGATGACACTG 57.213 40.909 0.00 0.00 0.00 3.66
2101 2129 3.001838 TGTTGTTGTTACGATGACACTGC 59.998 43.478 0.00 0.00 0.00 4.40
2102 2130 3.106242 TGTTGTTACGATGACACTGCT 57.894 42.857 0.00 0.00 0.00 4.24
2103 2131 3.057019 TGTTGTTACGATGACACTGCTC 58.943 45.455 0.00 0.00 0.00 4.26
2104 2132 3.243737 TGTTGTTACGATGACACTGCTCT 60.244 43.478 0.00 0.00 0.00 4.09
2105 2133 3.217599 TGTTACGATGACACTGCTCTC 57.782 47.619 0.00 0.00 0.00 3.20
2106 2134 2.556622 TGTTACGATGACACTGCTCTCA 59.443 45.455 0.00 0.00 0.00 3.27
2107 2135 3.005367 TGTTACGATGACACTGCTCTCAA 59.995 43.478 0.00 0.00 0.00 3.02
2108 2136 4.177026 GTTACGATGACACTGCTCTCAAT 58.823 43.478 0.00 0.00 0.00 2.57
2109 2137 2.886081 ACGATGACACTGCTCTCAATC 58.114 47.619 0.00 0.00 0.00 2.67
2110 2138 1.851053 CGATGACACTGCTCTCAATCG 59.149 52.381 0.00 0.00 0.00 3.34
2111 2139 2.733542 CGATGACACTGCTCTCAATCGT 60.734 50.000 0.00 0.00 0.00 3.73
2112 2140 2.820059 TGACACTGCTCTCAATCGTT 57.180 45.000 0.00 0.00 0.00 3.85
2113 2141 3.111853 TGACACTGCTCTCAATCGTTT 57.888 42.857 0.00 0.00 0.00 3.60
2114 2142 2.802247 TGACACTGCTCTCAATCGTTTG 59.198 45.455 0.00 0.00 0.00 2.93
2115 2143 2.802816 GACACTGCTCTCAATCGTTTGT 59.197 45.455 6.14 0.00 34.32 2.83
2116 2144 2.802816 ACACTGCTCTCAATCGTTTGTC 59.197 45.455 6.14 0.00 34.32 3.18
2117 2145 3.062763 CACTGCTCTCAATCGTTTGTCT 58.937 45.455 6.14 0.00 34.32 3.41
2118 2146 4.237724 CACTGCTCTCAATCGTTTGTCTA 58.762 43.478 6.14 0.00 34.32 2.59
2119 2147 4.325741 CACTGCTCTCAATCGTTTGTCTAG 59.674 45.833 6.14 4.18 34.32 2.43
2120 2148 4.021894 ACTGCTCTCAATCGTTTGTCTAGT 60.022 41.667 6.14 3.38 34.32 2.57
2121 2149 5.183331 ACTGCTCTCAATCGTTTGTCTAGTA 59.817 40.000 6.14 2.32 34.32 1.82
2122 2150 6.020971 TGCTCTCAATCGTTTGTCTAGTAA 57.979 37.500 6.14 0.00 34.32 2.24
2123 2151 6.452242 TGCTCTCAATCGTTTGTCTAGTAAA 58.548 36.000 6.14 0.00 34.32 2.01
2124 2152 6.926826 TGCTCTCAATCGTTTGTCTAGTAAAA 59.073 34.615 6.14 0.00 34.32 1.52
2125 2153 7.602644 TGCTCTCAATCGTTTGTCTAGTAAAAT 59.397 33.333 6.14 0.00 34.32 1.82
2126 2154 9.084164 GCTCTCAATCGTTTGTCTAGTAAAATA 57.916 33.333 6.14 0.00 34.32 1.40
2144 2172 9.322773 AGTAAAATATCCTAGTTTAGTTTCGGC 57.677 33.333 0.00 0.00 30.34 5.54
2145 2173 7.563888 AAAATATCCTAGTTTAGTTTCGGCC 57.436 36.000 0.00 0.00 0.00 6.13
2146 2174 5.881923 ATATCCTAGTTTAGTTTCGGCCA 57.118 39.130 2.24 0.00 0.00 5.36
2147 2175 3.323751 TCCTAGTTTAGTTTCGGCCAC 57.676 47.619 2.24 0.00 0.00 5.01
2148 2176 2.901839 TCCTAGTTTAGTTTCGGCCACT 59.098 45.455 2.24 0.52 0.00 4.00
2149 2177 3.325716 TCCTAGTTTAGTTTCGGCCACTT 59.674 43.478 2.24 0.00 0.00 3.16
2150 2178 4.070009 CCTAGTTTAGTTTCGGCCACTTT 58.930 43.478 2.24 0.00 0.00 2.66
2151 2179 3.982576 AGTTTAGTTTCGGCCACTTTG 57.017 42.857 2.24 0.00 0.00 2.77
2152 2180 2.034179 AGTTTAGTTTCGGCCACTTTGC 59.966 45.455 2.24 0.00 0.00 3.68
2161 2189 3.684693 GCCACTTTGCCAATGTGTT 57.315 47.368 18.64 0.00 35.45 3.32
2162 2190 2.810439 GCCACTTTGCCAATGTGTTA 57.190 45.000 18.64 0.00 35.45 2.41
2163 2191 3.104843 GCCACTTTGCCAATGTGTTAA 57.895 42.857 18.64 0.00 35.45 2.01
2164 2192 3.462021 GCCACTTTGCCAATGTGTTAAA 58.538 40.909 18.64 0.00 35.45 1.52
2165 2193 3.494251 GCCACTTTGCCAATGTGTTAAAG 59.506 43.478 18.64 7.28 35.45 1.85
2166 2194 4.692228 CCACTTTGCCAATGTGTTAAAGT 58.308 39.130 18.64 0.00 40.93 2.66
2167 2195 5.115480 CCACTTTGCCAATGTGTTAAAGTT 58.885 37.500 18.64 0.00 38.96 2.66
2168 2196 5.584251 CCACTTTGCCAATGTGTTAAAGTTT 59.416 36.000 18.64 0.00 38.96 2.66
2169 2197 6.238076 CCACTTTGCCAATGTGTTAAAGTTTC 60.238 38.462 18.64 0.00 38.96 2.78
2170 2198 6.534793 CACTTTGCCAATGTGTTAAAGTTTCT 59.465 34.615 13.66 0.00 38.96 2.52
2171 2199 6.756542 ACTTTGCCAATGTGTTAAAGTTTCTC 59.243 34.615 0.00 0.00 38.11 2.87
2172 2200 4.854399 TGCCAATGTGTTAAAGTTTCTCG 58.146 39.130 0.00 0.00 0.00 4.04
2173 2201 4.336993 TGCCAATGTGTTAAAGTTTCTCGT 59.663 37.500 0.00 0.00 0.00 4.18
2174 2202 4.675114 GCCAATGTGTTAAAGTTTCTCGTG 59.325 41.667 0.00 0.00 0.00 4.35
2175 2203 4.675114 CCAATGTGTTAAAGTTTCTCGTGC 59.325 41.667 0.00 0.00 0.00 5.34
2176 2204 5.270083 CAATGTGTTAAAGTTTCTCGTGCA 58.730 37.500 0.00 0.00 0.00 4.57
2177 2205 5.689383 ATGTGTTAAAGTTTCTCGTGCAT 57.311 34.783 0.00 0.00 0.00 3.96
2178 2206 4.843147 TGTGTTAAAGTTTCTCGTGCATG 58.157 39.130 0.00 0.00 0.00 4.06
2179 2207 4.334203 TGTGTTAAAGTTTCTCGTGCATGT 59.666 37.500 5.68 0.00 0.00 3.21
2180 2208 4.670621 GTGTTAAAGTTTCTCGTGCATGTG 59.329 41.667 5.68 3.44 0.00 3.21
2181 2209 4.572795 TGTTAAAGTTTCTCGTGCATGTGA 59.427 37.500 5.68 6.17 0.00 3.58
2182 2210 5.238432 TGTTAAAGTTTCTCGTGCATGTGAT 59.762 36.000 11.24 0.00 0.00 3.06
2183 2211 6.425417 TGTTAAAGTTTCTCGTGCATGTGATA 59.575 34.615 11.24 4.46 0.00 2.15
2184 2212 7.119116 TGTTAAAGTTTCTCGTGCATGTGATAT 59.881 33.333 11.24 0.00 0.00 1.63
2185 2213 5.475273 AAGTTTCTCGTGCATGTGATATG 57.525 39.130 11.24 0.00 0.00 1.78
2186 2214 4.507710 AGTTTCTCGTGCATGTGATATGT 58.492 39.130 11.24 0.00 0.00 2.29
2187 2215 4.937620 AGTTTCTCGTGCATGTGATATGTT 59.062 37.500 11.24 0.00 0.00 2.71
2188 2216 6.106003 AGTTTCTCGTGCATGTGATATGTTA 58.894 36.000 11.24 0.00 0.00 2.41
2189 2217 6.763135 AGTTTCTCGTGCATGTGATATGTTAT 59.237 34.615 11.24 0.00 0.00 1.89
2190 2218 6.529463 TTCTCGTGCATGTGATATGTTATG 57.471 37.500 11.24 0.00 0.00 1.90
2191 2219 5.841810 TCTCGTGCATGTGATATGTTATGA 58.158 37.500 5.68 0.00 0.00 2.15
2192 2220 6.458210 TCTCGTGCATGTGATATGTTATGAT 58.542 36.000 5.68 0.00 0.00 2.45
2193 2221 6.366877 TCTCGTGCATGTGATATGTTATGATG 59.633 38.462 5.68 0.00 0.00 3.07
2194 2222 6.222389 TCGTGCATGTGATATGTTATGATGA 58.778 36.000 5.68 0.00 0.00 2.92
2195 2223 6.146021 TCGTGCATGTGATATGTTATGATGAC 59.854 38.462 5.68 0.00 0.00 3.06
2196 2224 6.146673 CGTGCATGTGATATGTTATGATGACT 59.853 38.462 0.00 0.00 0.00 3.41
2197 2225 7.329226 CGTGCATGTGATATGTTATGATGACTA 59.671 37.037 0.00 0.00 0.00 2.59
2198 2226 8.654215 GTGCATGTGATATGTTATGATGACTAG 58.346 37.037 0.00 0.00 0.00 2.57
2199 2227 8.587608 TGCATGTGATATGTTATGATGACTAGA 58.412 33.333 0.00 0.00 0.00 2.43
2200 2228 9.428097 GCATGTGATATGTTATGATGACTAGAA 57.572 33.333 0.00 0.00 0.00 2.10
2205 2233 9.899226 TGATATGTTATGATGACTAGAAGAACG 57.101 33.333 0.00 0.00 0.00 3.95
2206 2234 8.749841 ATATGTTATGATGACTAGAAGAACGC 57.250 34.615 0.00 0.00 0.00 4.84
2207 2235 5.348986 TGTTATGATGACTAGAAGAACGCC 58.651 41.667 0.00 0.00 0.00 5.68
2208 2236 2.961526 TGATGACTAGAAGAACGCCC 57.038 50.000 0.00 0.00 0.00 6.13
2209 2237 1.134367 TGATGACTAGAAGAACGCCCG 59.866 52.381 0.00 0.00 0.00 6.13
2210 2238 1.134560 GATGACTAGAAGAACGCCCGT 59.865 52.381 0.00 0.00 0.00 5.28
2211 2239 0.242825 TGACTAGAAGAACGCCCGTG 59.757 55.000 0.00 0.00 0.00 4.94
2212 2240 1.077089 GACTAGAAGAACGCCCGTGC 61.077 60.000 0.00 0.00 0.00 5.34
2236 2264 2.831043 ACGGGGCCACGTTAACTT 59.169 55.556 31.47 2.70 46.25 2.66
2237 2265 2.056985 ACGGGGCCACGTTAACTTA 58.943 52.632 31.47 0.00 46.25 2.24
2238 2266 0.396060 ACGGGGCCACGTTAACTTAA 59.604 50.000 31.47 0.00 46.25 1.85
2239 2267 1.202746 ACGGGGCCACGTTAACTTAAA 60.203 47.619 31.47 0.00 46.25 1.52
2240 2268 1.465777 CGGGGCCACGTTAACTTAAAG 59.534 52.381 22.33 0.00 0.00 1.85
2241 2269 2.781923 GGGGCCACGTTAACTTAAAGA 58.218 47.619 4.39 0.00 0.00 2.52
2242 2270 2.745821 GGGGCCACGTTAACTTAAAGAG 59.254 50.000 4.39 0.00 0.00 2.85
2243 2271 3.405831 GGGCCACGTTAACTTAAAGAGT 58.594 45.455 4.39 0.00 41.47 3.24
2245 2273 4.083643 GGGCCACGTTAACTTAAAGAGTTC 60.084 45.833 4.39 0.00 45.40 3.01
2246 2274 4.512571 GGCCACGTTAACTTAAAGAGTTCA 59.487 41.667 0.00 0.00 45.40 3.18
2247 2275 5.007921 GGCCACGTTAACTTAAAGAGTTCAA 59.992 40.000 0.00 0.00 45.40 2.69
2248 2276 6.293790 GGCCACGTTAACTTAAAGAGTTCAAT 60.294 38.462 0.00 0.00 45.40 2.57
2249 2277 7.095102 GGCCACGTTAACTTAAAGAGTTCAATA 60.095 37.037 0.00 0.00 45.40 1.90
2250 2278 8.448615 GCCACGTTAACTTAAAGAGTTCAATAT 58.551 33.333 3.71 0.00 45.40 1.28
2262 2290 6.604735 AGAGTTCAATATTACGACATTGGC 57.395 37.500 0.00 0.00 33.77 4.52
2263 2291 5.234329 AGAGTTCAATATTACGACATTGGCG 59.766 40.000 11.09 11.09 33.77 5.69
2264 2292 5.113383 AGTTCAATATTACGACATTGGCGA 58.887 37.500 20.74 0.00 33.77 5.54
2265 2293 5.006358 AGTTCAATATTACGACATTGGCGAC 59.994 40.000 20.74 2.50 33.77 5.19
2266 2294 3.805422 TCAATATTACGACATTGGCGACC 59.195 43.478 20.74 0.00 33.77 4.79
2267 2295 3.746045 ATATTACGACATTGGCGACCT 57.254 42.857 20.74 4.55 0.00 3.85
2268 2296 2.396590 ATTACGACATTGGCGACCTT 57.603 45.000 20.74 0.00 0.00 3.50
2269 2297 2.172851 TTACGACATTGGCGACCTTT 57.827 45.000 20.74 0.00 0.00 3.11
2270 2298 2.172851 TACGACATTGGCGACCTTTT 57.827 45.000 20.74 0.00 0.00 2.27
2271 2299 1.314730 ACGACATTGGCGACCTTTTT 58.685 45.000 20.74 0.00 0.00 1.94
2291 2319 6.968263 TTTTTACCATCAAATCCTCACACA 57.032 33.333 0.00 0.00 0.00 3.72
2292 2320 5.957842 TTTACCATCAAATCCTCACACAC 57.042 39.130 0.00 0.00 0.00 3.82
2293 2321 3.507162 ACCATCAAATCCTCACACACA 57.493 42.857 0.00 0.00 0.00 3.72
2294 2322 3.149196 ACCATCAAATCCTCACACACAC 58.851 45.455 0.00 0.00 0.00 3.82
2295 2323 3.148412 CCATCAAATCCTCACACACACA 58.852 45.455 0.00 0.00 0.00 3.72
2296 2324 3.058016 CCATCAAATCCTCACACACACAC 60.058 47.826 0.00 0.00 0.00 3.82
2297 2325 3.274095 TCAAATCCTCACACACACACA 57.726 42.857 0.00 0.00 0.00 3.72
2298 2326 2.942376 TCAAATCCTCACACACACACAC 59.058 45.455 0.00 0.00 0.00 3.82
2299 2327 2.682352 CAAATCCTCACACACACACACA 59.318 45.455 0.00 0.00 0.00 3.72
2300 2328 1.953559 ATCCTCACACACACACACAC 58.046 50.000 0.00 0.00 0.00 3.82
2301 2329 0.610687 TCCTCACACACACACACACA 59.389 50.000 0.00 0.00 0.00 3.72
2302 2330 0.726827 CCTCACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
2303 2331 1.675714 CCTCACACACACACACACACT 60.676 52.381 0.00 0.00 0.00 3.55
2304 2332 1.660607 CTCACACACACACACACACTC 59.339 52.381 0.00 0.00 0.00 3.51
2305 2333 0.726827 CACACACACACACACACTCC 59.273 55.000 0.00 0.00 0.00 3.85
2306 2334 0.392461 ACACACACACACACACTCCC 60.392 55.000 0.00 0.00 0.00 4.30
2307 2335 0.107703 CACACACACACACACTCCCT 60.108 55.000 0.00 0.00 0.00 4.20
2308 2336 0.178068 ACACACACACACACTCCCTC 59.822 55.000 0.00 0.00 0.00 4.30
2309 2337 0.532862 CACACACACACACTCCCTCC 60.533 60.000 0.00 0.00 0.00 4.30
2310 2338 1.071471 CACACACACACTCCCTCCC 59.929 63.158 0.00 0.00 0.00 4.30
2311 2339 1.074471 ACACACACACTCCCTCCCT 60.074 57.895 0.00 0.00 0.00 4.20
2312 2340 1.122019 ACACACACACTCCCTCCCTC 61.122 60.000 0.00 0.00 0.00 4.30
2313 2341 0.833834 CACACACACTCCCTCCCTCT 60.834 60.000 0.00 0.00 0.00 3.69
2314 2342 0.104934 ACACACACTCCCTCCCTCTT 60.105 55.000 0.00 0.00 0.00 2.85
2315 2343 1.059913 CACACACTCCCTCCCTCTTT 58.940 55.000 0.00 0.00 0.00 2.52
2316 2344 1.002544 CACACACTCCCTCCCTCTTTC 59.997 57.143 0.00 0.00 0.00 2.62
2317 2345 1.132689 ACACACTCCCTCCCTCTTTCT 60.133 52.381 0.00 0.00 0.00 2.52
2318 2346 1.552792 CACACTCCCTCCCTCTTTCTC 59.447 57.143 0.00 0.00 0.00 2.87
2319 2347 1.150135 ACACTCCCTCCCTCTTTCTCA 59.850 52.381 0.00 0.00 0.00 3.27
2320 2348 1.552792 CACTCCCTCCCTCTTTCTCAC 59.447 57.143 0.00 0.00 0.00 3.51
2321 2349 1.435168 ACTCCCTCCCTCTTTCTCACT 59.565 52.381 0.00 0.00 0.00 3.41
2322 2350 2.107366 CTCCCTCCCTCTTTCTCACTC 58.893 57.143 0.00 0.00 0.00 3.51
2323 2351 1.719378 TCCCTCCCTCTTTCTCACTCT 59.281 52.381 0.00 0.00 0.00 3.24
2324 2352 2.107366 CCCTCCCTCTTTCTCACTCTC 58.893 57.143 0.00 0.00 0.00 3.20
2325 2353 2.292192 CCCTCCCTCTTTCTCACTCTCT 60.292 54.545 0.00 0.00 0.00 3.10
2326 2354 3.023832 CCTCCCTCTTTCTCACTCTCTC 58.976 54.545 0.00 0.00 0.00 3.20
2327 2355 3.309121 CCTCCCTCTTTCTCACTCTCTCT 60.309 52.174 0.00 0.00 0.00 3.10
2328 2356 3.947834 CTCCCTCTTTCTCACTCTCTCTC 59.052 52.174 0.00 0.00 0.00 3.20
2329 2357 3.023832 CCCTCTTTCTCACTCTCTCTCC 58.976 54.545 0.00 0.00 0.00 3.71
2330 2358 3.023832 CCTCTTTCTCACTCTCTCTCCC 58.976 54.545 0.00 0.00 0.00 4.30
2331 2359 3.023832 CTCTTTCTCACTCTCTCTCCCC 58.976 54.545 0.00 0.00 0.00 4.81
2332 2360 2.107366 CTTTCTCACTCTCTCTCCCCC 58.893 57.143 0.00 0.00 0.00 5.40
2333 2361 1.388174 TTCTCACTCTCTCTCCCCCT 58.612 55.000 0.00 0.00 0.00 4.79
2334 2362 0.923358 TCTCACTCTCTCTCCCCCTC 59.077 60.000 0.00 0.00 0.00 4.30
2335 2363 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
2336 2364 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
2337 2365 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
2338 2366 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
2339 2367 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2340 2368 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2341 2369 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2342 2370 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2343 2371 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2344 2372 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2345 2373 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2346 2374 0.350904 TCCCCCTCTCCCTCTCTCTA 59.649 60.000 0.00 0.00 0.00 2.43
2347 2375 1.236708 CCCCCTCTCCCTCTCTCTAA 58.763 60.000 0.00 0.00 0.00 2.10
2348 2376 1.133294 CCCCCTCTCCCTCTCTCTAAC 60.133 61.905 0.00 0.00 0.00 2.34
2349 2377 1.571457 CCCCTCTCCCTCTCTCTAACA 59.429 57.143 0.00 0.00 0.00 2.41
2350 2378 2.661718 CCCTCTCCCTCTCTCTAACAC 58.338 57.143 0.00 0.00 0.00 3.32
2351 2379 2.024846 CCCTCTCCCTCTCTCTAACACA 60.025 54.545 0.00 0.00 0.00 3.72
2352 2380 3.020984 CCTCTCCCTCTCTCTAACACAC 58.979 54.545 0.00 0.00 0.00 3.82
2353 2381 3.562393 CCTCTCCCTCTCTCTAACACACA 60.562 52.174 0.00 0.00 0.00 3.72
2354 2382 3.422796 TCTCCCTCTCTCTAACACACAC 58.577 50.000 0.00 0.00 0.00 3.82
2355 2383 3.157881 CTCCCTCTCTCTAACACACACA 58.842 50.000 0.00 0.00 0.00 3.72
2356 2384 2.891580 TCCCTCTCTCTAACACACACAC 59.108 50.000 0.00 0.00 0.00 3.82
2357 2385 2.628178 CCCTCTCTCTAACACACACACA 59.372 50.000 0.00 0.00 0.00 3.72
2358 2386 3.259374 CCCTCTCTCTAACACACACACAT 59.741 47.826 0.00 0.00 0.00 3.21
2359 2387 4.462834 CCCTCTCTCTAACACACACACATA 59.537 45.833 0.00 0.00 0.00 2.29
2360 2388 5.127845 CCCTCTCTCTAACACACACACATAT 59.872 44.000 0.00 0.00 0.00 1.78
2361 2389 6.269315 CCTCTCTCTAACACACACACATATC 58.731 44.000 0.00 0.00 0.00 1.63
2362 2390 6.208988 TCTCTCTAACACACACACATATCC 57.791 41.667 0.00 0.00 0.00 2.59
2363 2391 5.714806 TCTCTCTAACACACACACATATCCA 59.285 40.000 0.00 0.00 0.00 3.41
2364 2392 6.381133 TCTCTCTAACACACACACATATCCAT 59.619 38.462 0.00 0.00 0.00 3.41
2365 2393 6.573434 TCTCTAACACACACACATATCCATC 58.427 40.000 0.00 0.00 0.00 3.51
2366 2394 6.381133 TCTCTAACACACACACATATCCATCT 59.619 38.462 0.00 0.00 0.00 2.90
2367 2395 6.946340 TCTAACACACACACATATCCATCTT 58.054 36.000 0.00 0.00 0.00 2.40
2368 2396 8.073467 TCTAACACACACACATATCCATCTTA 57.927 34.615 0.00 0.00 0.00 2.10
2369 2397 8.704668 TCTAACACACACACATATCCATCTTAT 58.295 33.333 0.00 0.00 0.00 1.73
2370 2398 9.330063 CTAACACACACACATATCCATCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
2371 2399 7.558161 ACACACACACATATCCATCTTATTG 57.442 36.000 0.00 0.00 0.00 1.90
2372 2400 6.543465 ACACACACACATATCCATCTTATTGG 59.457 38.462 0.00 0.00 38.18 3.16
2373 2401 6.016860 CACACACACATATCCATCTTATTGGG 60.017 42.308 0.00 0.00 37.37 4.12
2374 2402 6.064060 CACACACATATCCATCTTATTGGGT 58.936 40.000 0.00 0.00 37.37 4.51
2375 2403 7.147391 ACACACACATATCCATCTTATTGGGTA 60.147 37.037 0.00 0.00 36.79 3.69
2376 2404 7.173218 CACACACATATCCATCTTATTGGGTAC 59.827 40.741 0.00 0.00 35.20 3.34
2377 2405 6.368791 CACACATATCCATCTTATTGGGTACG 59.631 42.308 0.00 0.00 35.20 3.67
2378 2406 5.874810 CACATATCCATCTTATTGGGTACGG 59.125 44.000 0.00 0.00 35.20 4.02
2379 2407 5.045869 ACATATCCATCTTATTGGGTACGGG 60.046 44.000 0.00 0.00 35.20 5.28
2380 2408 3.049108 TCCATCTTATTGGGTACGGGA 57.951 47.619 0.00 0.00 37.37 5.14
2381 2409 2.701951 TCCATCTTATTGGGTACGGGAC 59.298 50.000 0.00 0.00 37.37 4.46
2395 2423 5.934402 GTACGGGACCATAATCCATCTAT 57.066 43.478 0.00 0.00 40.96 1.98
2396 2424 6.295719 GTACGGGACCATAATCCATCTATT 57.704 41.667 0.00 0.00 40.96 1.73
2397 2425 5.843019 ACGGGACCATAATCCATCTATTT 57.157 39.130 0.00 0.00 40.96 1.40
2398 2426 5.805728 ACGGGACCATAATCCATCTATTTC 58.194 41.667 0.00 0.00 40.96 2.17
2399 2427 5.309543 ACGGGACCATAATCCATCTATTTCA 59.690 40.000 0.00 0.00 40.96 2.69
2400 2428 5.643777 CGGGACCATAATCCATCTATTTCAC 59.356 44.000 0.00 0.00 40.96 3.18
2401 2429 6.542821 GGGACCATAATCCATCTATTTCACA 58.457 40.000 0.00 0.00 40.96 3.58
2402 2430 6.431234 GGGACCATAATCCATCTATTTCACAC 59.569 42.308 0.00 0.00 40.96 3.82
2403 2431 6.998074 GGACCATAATCCATCTATTTCACACA 59.002 38.462 0.00 0.00 38.77 3.72
2404 2432 7.041098 GGACCATAATCCATCTATTTCACACAC 60.041 40.741 0.00 0.00 38.77 3.82
2405 2433 7.345691 ACCATAATCCATCTATTTCACACACA 58.654 34.615 0.00 0.00 0.00 3.72
2406 2434 7.283127 ACCATAATCCATCTATTTCACACACAC 59.717 37.037 0.00 0.00 0.00 3.82
2407 2435 7.282901 CCATAATCCATCTATTTCACACACACA 59.717 37.037 0.00 0.00 0.00 3.72
2408 2436 6.500684 AATCCATCTATTTCACACACACAC 57.499 37.500 0.00 0.00 0.00 3.82
2409 2437 3.993736 TCCATCTATTTCACACACACACG 59.006 43.478 0.00 0.00 0.00 4.49
2410 2438 3.424829 CCATCTATTTCACACACACACGC 60.425 47.826 0.00 0.00 0.00 5.34
2411 2439 3.106242 TCTATTTCACACACACACGCT 57.894 42.857 0.00 0.00 0.00 5.07
2412 2440 4.245845 TCTATTTCACACACACACGCTA 57.754 40.909 0.00 0.00 0.00 4.26
2413 2441 4.234574 TCTATTTCACACACACACGCTAG 58.765 43.478 0.00 0.00 0.00 3.42
2414 2442 2.303163 TTTCACACACACACGCTAGT 57.697 45.000 0.00 0.00 0.00 2.57
2428 2456 5.022335 CACGCTAGTGCATAACAATATGG 57.978 43.478 2.40 0.00 41.94 2.74
2429 2457 4.749598 CACGCTAGTGCATAACAATATGGA 59.250 41.667 2.40 0.00 41.94 3.41
2430 2458 5.409520 CACGCTAGTGCATAACAATATGGAT 59.590 40.000 2.40 0.00 41.20 3.41
2431 2459 5.997746 ACGCTAGTGCATAACAATATGGATT 59.002 36.000 2.40 0.00 41.20 3.01
2432 2460 7.117667 CACGCTAGTGCATAACAATATGGATTA 59.882 37.037 2.40 0.00 41.20 1.75
2433 2461 7.824289 ACGCTAGTGCATAACAATATGGATTAT 59.176 33.333 2.40 0.00 41.20 1.28
2434 2462 8.118607 CGCTAGTGCATAACAATATGGATTATG 58.881 37.037 0.00 8.50 41.20 1.90
2435 2463 8.950210 GCTAGTGCATAACAATATGGATTATGT 58.050 33.333 12.17 0.00 41.20 2.29
2437 2465 8.696043 AGTGCATAACAATATGGATTATGTGT 57.304 30.769 12.17 0.00 41.20 3.72
2438 2466 9.791801 AGTGCATAACAATATGGATTATGTGTA 57.208 29.630 12.17 2.42 41.20 2.90
2452 2480 9.019656 TGGATTATGTGTATTATATTTGCCACC 57.980 33.333 0.00 0.00 0.00 4.61
2453 2481 9.019656 GGATTATGTGTATTATATTTGCCACCA 57.980 33.333 0.00 0.00 0.00 4.17
2455 2483 9.806448 ATTATGTGTATTATATTTGCCACCAGA 57.194 29.630 0.00 0.00 0.00 3.86
2456 2484 9.634021 TTATGTGTATTATATTTGCCACCAGAA 57.366 29.630 0.00 0.00 0.00 3.02
2457 2485 7.328277 TGTGTATTATATTTGCCACCAGAAC 57.672 36.000 0.00 0.00 0.00 3.01
2458 2486 7.116075 TGTGTATTATATTTGCCACCAGAACT 58.884 34.615 0.00 0.00 0.00 3.01
2459 2487 7.066887 TGTGTATTATATTTGCCACCAGAACTG 59.933 37.037 0.00 0.00 0.00 3.16
2460 2488 7.282224 GTGTATTATATTTGCCACCAGAACTGA 59.718 37.037 3.19 0.00 0.00 3.41
2461 2489 6.949352 ATTATATTTGCCACCAGAACTGAG 57.051 37.500 3.19 0.00 0.00 3.35
2462 2490 1.915141 ATTTGCCACCAGAACTGAGG 58.085 50.000 3.19 6.21 0.00 3.86
2463 2491 0.178992 TTTGCCACCAGAACTGAGGG 60.179 55.000 3.19 5.55 0.00 4.30
2464 2492 1.059584 TTGCCACCAGAACTGAGGGA 61.060 55.000 13.11 8.80 0.00 4.20
2465 2493 1.059584 TGCCACCAGAACTGAGGGAA 61.060 55.000 13.11 3.14 0.00 3.97
2466 2494 0.329596 GCCACCAGAACTGAGGGAAT 59.670 55.000 13.11 0.00 0.00 3.01
2467 2495 1.272147 GCCACCAGAACTGAGGGAATT 60.272 52.381 13.11 0.00 0.00 2.17
2468 2496 2.026262 GCCACCAGAACTGAGGGAATTA 60.026 50.000 13.11 0.00 0.00 1.40
2469 2497 3.561313 GCCACCAGAACTGAGGGAATTAA 60.561 47.826 13.11 0.00 0.00 1.40
2470 2498 4.860022 CCACCAGAACTGAGGGAATTAAT 58.140 43.478 3.19 0.00 0.00 1.40
2471 2499 5.264395 CCACCAGAACTGAGGGAATTAATT 58.736 41.667 0.00 0.00 0.00 1.40
2472 2500 5.716703 CCACCAGAACTGAGGGAATTAATTT 59.283 40.000 1.43 0.00 0.00 1.82
2473 2501 6.127619 CCACCAGAACTGAGGGAATTAATTTC 60.128 42.308 1.43 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
353 365 5.401674 GTCGAGACGGTTGATTTGGATATAC 59.598 44.000 0.00 0.00 0.00 1.47
423 435 2.522193 GCCCGAAACACCCCCAAA 60.522 61.111 0.00 0.00 0.00 3.28
458 472 2.106418 GTTCGAACACGTTTTTCTGCC 58.894 47.619 23.12 0.00 0.00 4.85
625 639 0.107703 GCTGTAGCACTGTATGGCCA 60.108 55.000 8.56 8.56 41.59 5.36
717 731 2.540101 CTGCAAAGTTCTTCGTCTCGTT 59.460 45.455 0.00 0.00 0.00 3.85
783 797 6.370442 CCGTGTTGACACCTGATTAAAGAATA 59.630 38.462 8.56 0.00 43.66 1.75
853 868 9.777297 TGATCGAAATAAATATGAAGATGGACA 57.223 29.630 0.00 0.00 0.00 4.02
980 995 3.596310 TGGCACAGTAGCGTATTGTTA 57.404 42.857 0.00 0.00 34.64 2.41
996 1011 4.408821 GGTGTCGAGGGCATGGCA 62.409 66.667 22.06 0.00 0.00 4.92
1034 1049 4.100498 TCTCGTACTCCATTAACAATCCCC 59.900 45.833 0.00 0.00 0.00 4.81
1063 1078 2.046892 CCACACCTTCTCCGCCAG 60.047 66.667 0.00 0.00 0.00 4.85
1169 1184 5.004922 TGATTTTGTTTGCGGTTCTTTCT 57.995 34.783 0.00 0.00 0.00 2.52
1184 1202 3.821033 GGGATCTCCGGGTTATGATTTTG 59.179 47.826 0.00 0.00 36.71 2.44
1245 1266 8.893563 TTCCTATGTTTTCCACCTATTGAAAT 57.106 30.769 0.00 0.00 31.10 2.17
1246 1267 8.713708 TTTCCTATGTTTTCCACCTATTGAAA 57.286 30.769 0.00 0.00 0.00 2.69
1322 1343 4.202080 CCCCATTTGCATAGACATCAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
1330 1351 6.639563 ACAATAAAACCCCATTTGCATAGAC 58.360 36.000 0.00 0.00 0.00 2.59
1882 1905 6.403636 CCATCGGTTTATTTTTCTCTCCACTG 60.404 42.308 0.00 0.00 0.00 3.66
1951 1979 0.444651 TCCGCGGTTTATTTTCGCTG 59.555 50.000 27.15 0.00 46.23 5.18
2068 2096 9.781834 CATCGTAACAACAACAATGGTATAATT 57.218 29.630 0.00 0.00 0.00 1.40
2073 2101 5.758784 TGTCATCGTAACAACAACAATGGTA 59.241 36.000 0.00 0.00 0.00 3.25
2074 2102 4.576873 TGTCATCGTAACAACAACAATGGT 59.423 37.500 0.00 0.00 0.00 3.55
2075 2103 4.909305 GTGTCATCGTAACAACAACAATGG 59.091 41.667 0.00 0.00 0.00 3.16
2077 2105 5.747565 CAGTGTCATCGTAACAACAACAAT 58.252 37.500 0.00 0.00 0.00 2.71
2078 2106 4.495019 GCAGTGTCATCGTAACAACAACAA 60.495 41.667 0.00 0.00 0.00 2.83
2079 2107 3.001838 GCAGTGTCATCGTAACAACAACA 59.998 43.478 0.00 0.00 0.00 3.33
2080 2108 3.247648 AGCAGTGTCATCGTAACAACAAC 59.752 43.478 0.00 0.00 0.00 3.32
2081 2109 3.462982 AGCAGTGTCATCGTAACAACAA 58.537 40.909 0.00 0.00 0.00 2.83
2082 2110 3.057019 GAGCAGTGTCATCGTAACAACA 58.943 45.455 0.00 0.00 0.00 3.33
2083 2111 3.318017 AGAGCAGTGTCATCGTAACAAC 58.682 45.455 0.00 0.00 0.00 3.32
2084 2112 3.005367 TGAGAGCAGTGTCATCGTAACAA 59.995 43.478 0.00 0.00 0.00 2.83
2085 2113 2.556622 TGAGAGCAGTGTCATCGTAACA 59.443 45.455 0.00 0.00 0.00 2.41
2086 2114 3.217599 TGAGAGCAGTGTCATCGTAAC 57.782 47.619 0.00 0.00 0.00 2.50
2087 2115 3.934457 TTGAGAGCAGTGTCATCGTAA 57.066 42.857 0.00 0.00 0.00 3.18
2088 2116 3.487544 CGATTGAGAGCAGTGTCATCGTA 60.488 47.826 0.00 0.00 29.97 3.43
2089 2117 2.733542 CGATTGAGAGCAGTGTCATCGT 60.734 50.000 0.00 0.00 29.97 3.73
2090 2118 1.851053 CGATTGAGAGCAGTGTCATCG 59.149 52.381 0.00 0.00 0.00 3.84
2091 2119 2.886081 ACGATTGAGAGCAGTGTCATC 58.114 47.619 0.00 0.00 0.00 2.92
2092 2120 3.325293 AACGATTGAGAGCAGTGTCAT 57.675 42.857 0.00 0.00 0.00 3.06
2093 2121 2.802247 CAAACGATTGAGAGCAGTGTCA 59.198 45.455 0.00 0.00 38.94 3.58
2094 2122 2.802816 ACAAACGATTGAGAGCAGTGTC 59.197 45.455 12.79 0.00 38.94 3.67
2095 2123 2.802816 GACAAACGATTGAGAGCAGTGT 59.197 45.455 12.79 0.00 38.94 3.55
2096 2124 3.062763 AGACAAACGATTGAGAGCAGTG 58.937 45.455 12.79 0.00 38.94 3.66
2097 2125 3.393089 AGACAAACGATTGAGAGCAGT 57.607 42.857 12.79 0.00 38.94 4.40
2098 2126 4.489810 ACTAGACAAACGATTGAGAGCAG 58.510 43.478 12.79 4.51 38.94 4.24
2099 2127 4.521130 ACTAGACAAACGATTGAGAGCA 57.479 40.909 12.79 0.00 38.94 4.26
2100 2128 6.946229 TTTACTAGACAAACGATTGAGAGC 57.054 37.500 12.79 0.00 38.94 4.09
2118 2146 9.322773 GCCGAAACTAAACTAGGATATTTTACT 57.677 33.333 0.00 0.00 0.00 2.24
2119 2147 8.554528 GGCCGAAACTAAACTAGGATATTTTAC 58.445 37.037 0.00 0.00 0.00 2.01
2120 2148 8.266473 TGGCCGAAACTAAACTAGGATATTTTA 58.734 33.333 0.00 0.00 0.00 1.52
2121 2149 7.066645 GTGGCCGAAACTAAACTAGGATATTTT 59.933 37.037 0.00 0.00 0.00 1.82
2122 2150 6.541278 GTGGCCGAAACTAAACTAGGATATTT 59.459 38.462 0.00 0.00 0.00 1.40
2123 2151 6.053650 GTGGCCGAAACTAAACTAGGATATT 58.946 40.000 0.00 0.00 0.00 1.28
2124 2152 5.365895 AGTGGCCGAAACTAAACTAGGATAT 59.634 40.000 0.00 0.00 0.00 1.63
2125 2153 4.713321 AGTGGCCGAAACTAAACTAGGATA 59.287 41.667 0.00 0.00 0.00 2.59
2126 2154 3.518303 AGTGGCCGAAACTAAACTAGGAT 59.482 43.478 0.00 0.00 0.00 3.24
2127 2155 2.901839 AGTGGCCGAAACTAAACTAGGA 59.098 45.455 0.00 0.00 0.00 2.94
2128 2156 3.329929 AGTGGCCGAAACTAAACTAGG 57.670 47.619 0.00 0.00 0.00 3.02
2129 2157 4.612939 GCAAAGTGGCCGAAACTAAACTAG 60.613 45.833 0.00 0.00 0.00 2.57
2130 2158 3.251487 GCAAAGTGGCCGAAACTAAACTA 59.749 43.478 0.00 0.00 0.00 2.24
2131 2159 2.034179 GCAAAGTGGCCGAAACTAAACT 59.966 45.455 0.00 0.00 0.00 2.66
2132 2160 2.390938 GCAAAGTGGCCGAAACTAAAC 58.609 47.619 0.00 0.00 0.00 2.01
2133 2161 1.338655 GGCAAAGTGGCCGAAACTAAA 59.661 47.619 0.00 0.00 45.40 1.85
2134 2162 0.955905 GGCAAAGTGGCCGAAACTAA 59.044 50.000 0.00 0.00 45.40 2.24
2135 2163 2.636299 GGCAAAGTGGCCGAAACTA 58.364 52.632 0.00 0.00 45.40 2.24
2136 2164 3.443588 GGCAAAGTGGCCGAAACT 58.556 55.556 0.00 0.00 45.40 2.66
2143 2171 2.810439 TAACACATTGGCAAAGTGGC 57.190 45.000 31.46 0.00 44.03 5.01
2144 2172 4.692228 ACTTTAACACATTGGCAAAGTGG 58.308 39.130 31.46 19.26 35.56 4.00
2145 2173 6.534793 AGAAACTTTAACACATTGGCAAAGTG 59.465 34.615 28.20 28.20 36.38 3.16
2146 2174 6.639563 AGAAACTTTAACACATTGGCAAAGT 58.360 32.000 3.01 2.26 37.20 2.66
2147 2175 6.074888 CGAGAAACTTTAACACATTGGCAAAG 60.075 38.462 3.01 1.42 32.21 2.77
2148 2176 5.746245 CGAGAAACTTTAACACATTGGCAAA 59.254 36.000 3.01 0.00 0.00 3.68
2149 2177 5.163602 ACGAGAAACTTTAACACATTGGCAA 60.164 36.000 0.68 0.68 0.00 4.52
2150 2178 4.336993 ACGAGAAACTTTAACACATTGGCA 59.663 37.500 0.00 0.00 0.00 4.92
2151 2179 4.675114 CACGAGAAACTTTAACACATTGGC 59.325 41.667 0.00 0.00 0.00 4.52
2152 2180 4.675114 GCACGAGAAACTTTAACACATTGG 59.325 41.667 0.00 0.00 0.00 3.16
2153 2181 5.270083 TGCACGAGAAACTTTAACACATTG 58.730 37.500 0.00 0.00 0.00 2.82
2154 2182 5.493133 TGCACGAGAAACTTTAACACATT 57.507 34.783 0.00 0.00 0.00 2.71
2155 2183 5.008613 ACATGCACGAGAAACTTTAACACAT 59.991 36.000 0.00 0.00 0.00 3.21
2156 2184 4.334203 ACATGCACGAGAAACTTTAACACA 59.666 37.500 0.00 0.00 0.00 3.72
2157 2185 4.670621 CACATGCACGAGAAACTTTAACAC 59.329 41.667 0.00 0.00 0.00 3.32
2158 2186 4.572795 TCACATGCACGAGAAACTTTAACA 59.427 37.500 0.00 0.00 0.00 2.41
2159 2187 5.090652 TCACATGCACGAGAAACTTTAAC 57.909 39.130 0.00 0.00 0.00 2.01
2160 2188 5.940192 ATCACATGCACGAGAAACTTTAA 57.060 34.783 0.00 0.00 0.00 1.52
2161 2189 6.593770 ACATATCACATGCACGAGAAACTTTA 59.406 34.615 0.00 0.00 0.00 1.85
2162 2190 5.412594 ACATATCACATGCACGAGAAACTTT 59.587 36.000 0.00 0.00 0.00 2.66
2163 2191 4.937620 ACATATCACATGCACGAGAAACTT 59.062 37.500 0.00 0.00 0.00 2.66
2164 2192 4.507710 ACATATCACATGCACGAGAAACT 58.492 39.130 0.00 0.00 0.00 2.66
2165 2193 4.864916 ACATATCACATGCACGAGAAAC 57.135 40.909 0.00 0.00 0.00 2.78
2166 2194 6.760770 TCATAACATATCACATGCACGAGAAA 59.239 34.615 0.00 0.00 0.00 2.52
2167 2195 6.279882 TCATAACATATCACATGCACGAGAA 58.720 36.000 0.00 0.00 0.00 2.87
2168 2196 5.841810 TCATAACATATCACATGCACGAGA 58.158 37.500 0.00 0.00 0.00 4.04
2169 2197 6.366877 TCATCATAACATATCACATGCACGAG 59.633 38.462 0.00 0.00 0.00 4.18
2170 2198 6.146021 GTCATCATAACATATCACATGCACGA 59.854 38.462 0.00 0.00 0.00 4.35
2171 2199 6.146673 AGTCATCATAACATATCACATGCACG 59.853 38.462 0.00 0.00 0.00 5.34
2172 2200 7.430992 AGTCATCATAACATATCACATGCAC 57.569 36.000 0.00 0.00 0.00 4.57
2173 2201 8.587608 TCTAGTCATCATAACATATCACATGCA 58.412 33.333 0.00 0.00 0.00 3.96
2174 2202 8.992835 TCTAGTCATCATAACATATCACATGC 57.007 34.615 0.00 0.00 0.00 4.06
2179 2207 9.899226 CGTTCTTCTAGTCATCATAACATATCA 57.101 33.333 0.00 0.00 0.00 2.15
2180 2208 8.855279 GCGTTCTTCTAGTCATCATAACATATC 58.145 37.037 0.00 0.00 0.00 1.63
2181 2209 7.815068 GGCGTTCTTCTAGTCATCATAACATAT 59.185 37.037 0.00 0.00 0.00 1.78
2182 2210 7.145985 GGCGTTCTTCTAGTCATCATAACATA 58.854 38.462 0.00 0.00 0.00 2.29
2183 2211 5.986135 GGCGTTCTTCTAGTCATCATAACAT 59.014 40.000 0.00 0.00 0.00 2.71
2184 2212 5.348986 GGCGTTCTTCTAGTCATCATAACA 58.651 41.667 0.00 0.00 0.00 2.41
2185 2213 4.745620 GGGCGTTCTTCTAGTCATCATAAC 59.254 45.833 0.00 0.00 0.00 1.89
2186 2214 4.499188 CGGGCGTTCTTCTAGTCATCATAA 60.499 45.833 0.00 0.00 0.00 1.90
2187 2215 3.004419 CGGGCGTTCTTCTAGTCATCATA 59.996 47.826 0.00 0.00 0.00 2.15
2188 2216 2.223829 CGGGCGTTCTTCTAGTCATCAT 60.224 50.000 0.00 0.00 0.00 2.45
2189 2217 1.134367 CGGGCGTTCTTCTAGTCATCA 59.866 52.381 0.00 0.00 0.00 3.07
2190 2218 1.134560 ACGGGCGTTCTTCTAGTCATC 59.865 52.381 0.00 0.00 0.00 2.92
2191 2219 1.135083 CACGGGCGTTCTTCTAGTCAT 60.135 52.381 0.00 0.00 0.00 3.06
2192 2220 0.242825 CACGGGCGTTCTTCTAGTCA 59.757 55.000 0.00 0.00 0.00 3.41
2193 2221 1.077089 GCACGGGCGTTCTTCTAGTC 61.077 60.000 0.00 0.00 0.00 2.59
2194 2222 1.080025 GCACGGGCGTTCTTCTAGT 60.080 57.895 0.00 0.00 0.00 2.57
2195 2223 3.782042 GCACGGGCGTTCTTCTAG 58.218 61.111 0.00 0.00 0.00 2.43
2219 2247 0.396060 TTAAGTTAACGTGGCCCCGT 59.604 50.000 7.70 7.70 44.23 5.28
2220 2248 1.465777 CTTTAAGTTAACGTGGCCCCG 59.534 52.381 5.91 5.91 0.00 5.73
2221 2249 2.745821 CTCTTTAAGTTAACGTGGCCCC 59.254 50.000 0.00 0.00 0.00 5.80
2222 2250 3.405831 ACTCTTTAAGTTAACGTGGCCC 58.594 45.455 0.00 0.00 33.03 5.80
2236 2264 8.609176 GCCAATGTCGTAATATTGAACTCTTTA 58.391 33.333 0.00 0.00 36.41 1.85
2237 2265 7.472543 GCCAATGTCGTAATATTGAACTCTTT 58.527 34.615 0.00 0.00 36.41 2.52
2238 2266 6.238103 CGCCAATGTCGTAATATTGAACTCTT 60.238 38.462 0.00 0.00 36.41 2.85
2239 2267 5.234329 CGCCAATGTCGTAATATTGAACTCT 59.766 40.000 0.00 0.00 36.41 3.24
2240 2268 5.233476 TCGCCAATGTCGTAATATTGAACTC 59.767 40.000 0.00 0.00 36.41 3.01
2241 2269 5.006358 GTCGCCAATGTCGTAATATTGAACT 59.994 40.000 0.00 0.00 36.41 3.01
2242 2270 5.195379 GTCGCCAATGTCGTAATATTGAAC 58.805 41.667 0.00 0.00 36.41 3.18
2243 2271 4.271533 GGTCGCCAATGTCGTAATATTGAA 59.728 41.667 0.00 0.00 36.41 2.69
2244 2272 3.805422 GGTCGCCAATGTCGTAATATTGA 59.195 43.478 0.00 0.00 36.41 2.57
2245 2273 3.807622 AGGTCGCCAATGTCGTAATATTG 59.192 43.478 0.00 0.00 34.68 1.90
2246 2274 4.067972 AGGTCGCCAATGTCGTAATATT 57.932 40.909 0.00 0.00 0.00 1.28
2247 2275 3.746045 AGGTCGCCAATGTCGTAATAT 57.254 42.857 0.00 0.00 0.00 1.28
2248 2276 3.530265 AAGGTCGCCAATGTCGTAATA 57.470 42.857 0.00 0.00 0.00 0.98
2249 2277 2.396590 AAGGTCGCCAATGTCGTAAT 57.603 45.000 0.00 0.00 0.00 1.89
2250 2278 2.172851 AAAGGTCGCCAATGTCGTAA 57.827 45.000 0.00 0.00 0.00 3.18
2251 2279 2.172851 AAAAGGTCGCCAATGTCGTA 57.827 45.000 0.00 0.00 0.00 3.43
2252 2280 1.314730 AAAAAGGTCGCCAATGTCGT 58.685 45.000 0.00 0.00 0.00 4.34
2268 2296 6.322456 TGTGTGTGAGGATTTGATGGTAAAAA 59.678 34.615 0.00 0.00 0.00 1.94
2269 2297 5.830457 TGTGTGTGAGGATTTGATGGTAAAA 59.170 36.000 0.00 0.00 0.00 1.52
2270 2298 5.240623 GTGTGTGTGAGGATTTGATGGTAAA 59.759 40.000 0.00 0.00 0.00 2.01
2271 2299 4.759693 GTGTGTGTGAGGATTTGATGGTAA 59.240 41.667 0.00 0.00 0.00 2.85
2272 2300 4.202409 TGTGTGTGTGAGGATTTGATGGTA 60.202 41.667 0.00 0.00 0.00 3.25
2273 2301 3.149196 GTGTGTGTGAGGATTTGATGGT 58.851 45.455 0.00 0.00 0.00 3.55
2274 2302 3.058016 GTGTGTGTGTGAGGATTTGATGG 60.058 47.826 0.00 0.00 0.00 3.51
2275 2303 3.565063 TGTGTGTGTGTGAGGATTTGATG 59.435 43.478 0.00 0.00 0.00 3.07
2276 2304 3.565482 GTGTGTGTGTGTGAGGATTTGAT 59.435 43.478 0.00 0.00 0.00 2.57
2277 2305 2.942376 GTGTGTGTGTGTGAGGATTTGA 59.058 45.455 0.00 0.00 0.00 2.69
2278 2306 2.682352 TGTGTGTGTGTGTGAGGATTTG 59.318 45.455 0.00 0.00 0.00 2.32
2279 2307 2.682856 GTGTGTGTGTGTGTGAGGATTT 59.317 45.455 0.00 0.00 0.00 2.17
2280 2308 2.288666 GTGTGTGTGTGTGTGAGGATT 58.711 47.619 0.00 0.00 0.00 3.01
2281 2309 1.209261 TGTGTGTGTGTGTGTGAGGAT 59.791 47.619 0.00 0.00 0.00 3.24
2282 2310 0.610687 TGTGTGTGTGTGTGTGAGGA 59.389 50.000 0.00 0.00 0.00 3.71
2283 2311 0.726827 GTGTGTGTGTGTGTGTGAGG 59.273 55.000 0.00 0.00 0.00 3.86
2284 2312 1.660607 GAGTGTGTGTGTGTGTGTGAG 59.339 52.381 0.00 0.00 0.00 3.51
2285 2313 1.674519 GGAGTGTGTGTGTGTGTGTGA 60.675 52.381 0.00 0.00 0.00 3.58
2286 2314 0.726827 GGAGTGTGTGTGTGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
2287 2315 0.392461 GGGAGTGTGTGTGTGTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
2288 2316 0.107703 AGGGAGTGTGTGTGTGTGTG 60.108 55.000 0.00 0.00 0.00 3.82
2289 2317 0.178068 GAGGGAGTGTGTGTGTGTGT 59.822 55.000 0.00 0.00 0.00 3.72
2290 2318 0.532862 GGAGGGAGTGTGTGTGTGTG 60.533 60.000 0.00 0.00 0.00 3.82
2291 2319 1.696097 GGGAGGGAGTGTGTGTGTGT 61.696 60.000 0.00 0.00 0.00 3.72
2292 2320 1.071471 GGGAGGGAGTGTGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
2293 2321 1.074471 AGGGAGGGAGTGTGTGTGT 60.074 57.895 0.00 0.00 0.00 3.72
2294 2322 0.833834 AGAGGGAGGGAGTGTGTGTG 60.834 60.000 0.00 0.00 0.00 3.82
2295 2323 0.104934 AAGAGGGAGGGAGTGTGTGT 60.105 55.000 0.00 0.00 0.00 3.72
2296 2324 1.002544 GAAAGAGGGAGGGAGTGTGTG 59.997 57.143 0.00 0.00 0.00 3.82
2297 2325 1.132689 AGAAAGAGGGAGGGAGTGTGT 60.133 52.381 0.00 0.00 0.00 3.72
2298 2326 1.552792 GAGAAAGAGGGAGGGAGTGTG 59.447 57.143 0.00 0.00 0.00 3.82
2299 2327 1.150135 TGAGAAAGAGGGAGGGAGTGT 59.850 52.381 0.00 0.00 0.00 3.55
2300 2328 1.552792 GTGAGAAAGAGGGAGGGAGTG 59.447 57.143 0.00 0.00 0.00 3.51
2301 2329 1.435168 AGTGAGAAAGAGGGAGGGAGT 59.565 52.381 0.00 0.00 0.00 3.85
2302 2330 2.107366 GAGTGAGAAAGAGGGAGGGAG 58.893 57.143 0.00 0.00 0.00 4.30
2303 2331 1.719378 AGAGTGAGAAAGAGGGAGGGA 59.281 52.381 0.00 0.00 0.00 4.20
2304 2332 2.107366 GAGAGTGAGAAAGAGGGAGGG 58.893 57.143 0.00 0.00 0.00 4.30
2305 2333 3.023832 GAGAGAGTGAGAAAGAGGGAGG 58.976 54.545 0.00 0.00 0.00 4.30
2306 2334 3.947834 GAGAGAGAGTGAGAAAGAGGGAG 59.052 52.174 0.00 0.00 0.00 4.30
2307 2335 3.308832 GGAGAGAGAGTGAGAAAGAGGGA 60.309 52.174 0.00 0.00 0.00 4.20
2308 2336 3.023832 GGAGAGAGAGTGAGAAAGAGGG 58.976 54.545 0.00 0.00 0.00 4.30
2309 2337 3.023832 GGGAGAGAGAGTGAGAAAGAGG 58.976 54.545 0.00 0.00 0.00 3.69
2310 2338 3.023832 GGGGAGAGAGAGTGAGAAAGAG 58.976 54.545 0.00 0.00 0.00 2.85
2311 2339 2.291930 GGGGGAGAGAGAGTGAGAAAGA 60.292 54.545 0.00 0.00 0.00 2.52
2312 2340 2.107366 GGGGGAGAGAGAGTGAGAAAG 58.893 57.143 0.00 0.00 0.00 2.62
2313 2341 1.719378 AGGGGGAGAGAGAGTGAGAAA 59.281 52.381 0.00 0.00 0.00 2.52
2314 2342 1.286553 GAGGGGGAGAGAGAGTGAGAA 59.713 57.143 0.00 0.00 0.00 2.87
2315 2343 0.923358 GAGGGGGAGAGAGAGTGAGA 59.077 60.000 0.00 0.00 0.00 3.27
2316 2344 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
2317 2345 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
2318 2346 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
2319 2347 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
2320 2348 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2321 2349 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2322 2350 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2323 2351 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2324 2352 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2325 2353 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2326 2354 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
2327 2355 0.350904 TAGAGAGAGGGAGAGGGGGA 59.649 60.000 0.00 0.00 0.00 4.81
2328 2356 1.133294 GTTAGAGAGAGGGAGAGGGGG 60.133 61.905 0.00 0.00 0.00 5.40
2329 2357 1.571457 TGTTAGAGAGAGGGAGAGGGG 59.429 57.143 0.00 0.00 0.00 4.79
2330 2358 2.024846 TGTGTTAGAGAGAGGGAGAGGG 60.025 54.545 0.00 0.00 0.00 4.30
2331 2359 3.020984 GTGTGTTAGAGAGAGGGAGAGG 58.979 54.545 0.00 0.00 0.00 3.69
2332 2360 3.442273 GTGTGTGTTAGAGAGAGGGAGAG 59.558 52.174 0.00 0.00 0.00 3.20
2333 2361 3.181433 TGTGTGTGTTAGAGAGAGGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
2334 2362 3.057174 GTGTGTGTGTTAGAGAGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
2335 2363 2.891580 GTGTGTGTGTTAGAGAGAGGGA 59.108 50.000 0.00 0.00 0.00 4.20
2336 2364 2.628178 TGTGTGTGTGTTAGAGAGAGGG 59.372 50.000 0.00 0.00 0.00 4.30
2337 2365 4.527509 ATGTGTGTGTGTTAGAGAGAGG 57.472 45.455 0.00 0.00 0.00 3.69
2338 2366 6.127619 TGGATATGTGTGTGTGTTAGAGAGAG 60.128 42.308 0.00 0.00 0.00 3.20
2339 2367 5.714806 TGGATATGTGTGTGTGTTAGAGAGA 59.285 40.000 0.00 0.00 0.00 3.10
2340 2368 5.965922 TGGATATGTGTGTGTGTTAGAGAG 58.034 41.667 0.00 0.00 0.00 3.20
2341 2369 5.993748 TGGATATGTGTGTGTGTTAGAGA 57.006 39.130 0.00 0.00 0.00 3.10
2342 2370 6.577103 AGATGGATATGTGTGTGTGTTAGAG 58.423 40.000 0.00 0.00 0.00 2.43
2343 2371 6.544928 AGATGGATATGTGTGTGTGTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
2344 2372 8.893219 ATAAGATGGATATGTGTGTGTGTTAG 57.107 34.615 0.00 0.00 0.00 2.34
2345 2373 9.108284 CAATAAGATGGATATGTGTGTGTGTTA 57.892 33.333 0.00 0.00 0.00 2.41
2346 2374 7.067372 CCAATAAGATGGATATGTGTGTGTGTT 59.933 37.037 0.00 0.00 43.54 3.32
2347 2375 6.543465 CCAATAAGATGGATATGTGTGTGTGT 59.457 38.462 0.00 0.00 43.54 3.72
2348 2376 6.016860 CCCAATAAGATGGATATGTGTGTGTG 60.017 42.308 0.00 0.00 43.54 3.82
2349 2377 6.064060 CCCAATAAGATGGATATGTGTGTGT 58.936 40.000 0.00 0.00 43.54 3.72
2350 2378 6.064060 ACCCAATAAGATGGATATGTGTGTG 58.936 40.000 0.00 0.00 43.54 3.82
2351 2379 6.266131 ACCCAATAAGATGGATATGTGTGT 57.734 37.500 0.00 0.00 43.54 3.72
2352 2380 6.368791 CGTACCCAATAAGATGGATATGTGTG 59.631 42.308 0.00 0.00 43.54 3.82
2353 2381 6.464222 CGTACCCAATAAGATGGATATGTGT 58.536 40.000 0.00 0.00 43.54 3.72
2354 2382 5.874810 CCGTACCCAATAAGATGGATATGTG 59.125 44.000 0.00 0.00 43.54 3.21
2355 2383 5.045869 CCCGTACCCAATAAGATGGATATGT 60.046 44.000 0.00 0.00 43.54 2.29
2356 2384 5.188948 TCCCGTACCCAATAAGATGGATATG 59.811 44.000 0.00 0.00 43.54 1.78
2357 2385 5.189145 GTCCCGTACCCAATAAGATGGATAT 59.811 44.000 0.00 0.00 43.54 1.63
2358 2386 4.529377 GTCCCGTACCCAATAAGATGGATA 59.471 45.833 0.00 0.00 43.54 2.59
2359 2387 3.326880 GTCCCGTACCCAATAAGATGGAT 59.673 47.826 0.00 0.00 43.54 3.41
2360 2388 2.701951 GTCCCGTACCCAATAAGATGGA 59.298 50.000 0.00 0.00 43.54 3.41
2361 2389 2.224450 GGTCCCGTACCCAATAAGATGG 60.224 54.545 0.00 0.00 43.16 3.51
2362 2390 3.121738 GGTCCCGTACCCAATAAGATG 57.878 52.381 0.00 0.00 43.16 2.90
2373 2401 5.934402 ATAGATGGATTATGGTCCCGTAC 57.066 43.478 0.00 0.00 37.48 3.67
2374 2402 6.499000 TGAAATAGATGGATTATGGTCCCGTA 59.501 38.462 0.00 0.00 37.48 4.02
2375 2403 5.309543 TGAAATAGATGGATTATGGTCCCGT 59.690 40.000 0.00 0.00 37.48 5.28
2376 2404 5.643777 GTGAAATAGATGGATTATGGTCCCG 59.356 44.000 0.00 0.00 37.48 5.14
2377 2405 6.431234 GTGTGAAATAGATGGATTATGGTCCC 59.569 42.308 0.00 0.00 37.48 4.46
2378 2406 6.998074 TGTGTGAAATAGATGGATTATGGTCC 59.002 38.462 0.00 0.00 38.81 4.46
2379 2407 7.498900 TGTGTGTGAAATAGATGGATTATGGTC 59.501 37.037 0.00 0.00 0.00 4.02
2380 2408 7.283127 GTGTGTGTGAAATAGATGGATTATGGT 59.717 37.037 0.00 0.00 0.00 3.55
2381 2409 7.282901 TGTGTGTGTGAAATAGATGGATTATGG 59.717 37.037 0.00 0.00 0.00 2.74
2382 2410 8.124823 GTGTGTGTGTGAAATAGATGGATTATG 58.875 37.037 0.00 0.00 0.00 1.90
2383 2411 7.011389 CGTGTGTGTGTGAAATAGATGGATTAT 59.989 37.037 0.00 0.00 0.00 1.28
2384 2412 6.312672 CGTGTGTGTGTGAAATAGATGGATTA 59.687 38.462 0.00 0.00 0.00 1.75
2385 2413 5.122239 CGTGTGTGTGTGAAATAGATGGATT 59.878 40.000 0.00 0.00 0.00 3.01
2386 2414 4.631377 CGTGTGTGTGTGAAATAGATGGAT 59.369 41.667 0.00 0.00 0.00 3.41
2387 2415 3.993736 CGTGTGTGTGTGAAATAGATGGA 59.006 43.478 0.00 0.00 0.00 3.41
2388 2416 3.424829 GCGTGTGTGTGTGAAATAGATGG 60.425 47.826 0.00 0.00 0.00 3.51
2389 2417 3.433274 AGCGTGTGTGTGTGAAATAGATG 59.567 43.478 0.00 0.00 0.00 2.90
2390 2418 3.664107 AGCGTGTGTGTGTGAAATAGAT 58.336 40.909 0.00 0.00 0.00 1.98
2391 2419 3.106242 AGCGTGTGTGTGTGAAATAGA 57.894 42.857 0.00 0.00 0.00 1.98
2392 2420 3.987868 ACTAGCGTGTGTGTGTGAAATAG 59.012 43.478 0.00 0.00 0.00 1.73
2393 2421 3.738791 CACTAGCGTGTGTGTGTGAAATA 59.261 43.478 4.34 0.00 36.39 1.40
2394 2422 2.543848 CACTAGCGTGTGTGTGTGAAAT 59.456 45.455 4.34 0.00 36.39 2.17
2395 2423 1.930503 CACTAGCGTGTGTGTGTGAAA 59.069 47.619 4.34 0.00 36.39 2.69
2396 2424 1.566404 CACTAGCGTGTGTGTGTGAA 58.434 50.000 4.34 0.00 36.39 3.18
2397 2425 0.874175 GCACTAGCGTGTGTGTGTGA 60.874 55.000 12.36 0.00 43.16 3.58
2398 2426 1.151172 TGCACTAGCGTGTGTGTGTG 61.151 55.000 12.36 0.00 46.23 3.82
2399 2427 0.249868 ATGCACTAGCGTGTGTGTGT 60.250 50.000 12.36 0.00 46.23 3.72
2400 2428 1.708822 TATGCACTAGCGTGTGTGTG 58.291 50.000 12.36 0.00 46.23 3.82
2401 2429 2.066262 GTTATGCACTAGCGTGTGTGT 58.934 47.619 12.36 5.67 46.23 3.72
2402 2430 2.065512 TGTTATGCACTAGCGTGTGTG 58.934 47.619 12.36 5.74 46.23 3.82
2403 2431 2.448926 TGTTATGCACTAGCGTGTGT 57.551 45.000 12.36 0.00 46.23 3.72
2404 2432 5.434706 CATATTGTTATGCACTAGCGTGTG 58.565 41.667 7.59 7.59 46.23 3.82
2405 2433 4.511454 CCATATTGTTATGCACTAGCGTGT 59.489 41.667 0.00 0.00 46.23 4.49
2406 2434 4.749598 TCCATATTGTTATGCACTAGCGTG 59.250 41.667 0.00 0.00 46.23 5.34
2407 2435 4.956085 TCCATATTGTTATGCACTAGCGT 58.044 39.130 0.00 0.00 46.23 5.07
2408 2436 6.486253 AATCCATATTGTTATGCACTAGCG 57.514 37.500 0.00 0.00 46.23 4.26
2409 2437 8.950210 ACATAATCCATATTGTTATGCACTAGC 58.050 33.333 0.00 0.00 38.67 3.42
2411 2439 9.791801 ACACATAATCCATATTGTTATGCACTA 57.208 29.630 0.00 0.00 38.67 2.74
2412 2440 8.696043 ACACATAATCCATATTGTTATGCACT 57.304 30.769 0.00 0.00 38.67 4.40
2426 2454 9.019656 GGTGGCAAATATAATACACATAATCCA 57.980 33.333 0.00 0.00 0.00 3.41
2427 2455 9.019656 TGGTGGCAAATATAATACACATAATCC 57.980 33.333 0.00 0.00 0.00 3.01
2429 2457 9.806448 TCTGGTGGCAAATATAATACACATAAT 57.194 29.630 0.00 0.00 0.00 1.28
2430 2458 9.634021 TTCTGGTGGCAAATATAATACACATAA 57.366 29.630 0.00 0.00 0.00 1.90
2431 2459 9.062524 GTTCTGGTGGCAAATATAATACACATA 57.937 33.333 0.00 0.00 0.00 2.29
2432 2460 7.779798 AGTTCTGGTGGCAAATATAATACACAT 59.220 33.333 0.00 0.00 0.00 3.21
2433 2461 7.066887 CAGTTCTGGTGGCAAATATAATACACA 59.933 37.037 0.00 0.00 0.00 3.72
2434 2462 7.282224 TCAGTTCTGGTGGCAAATATAATACAC 59.718 37.037 0.00 0.00 0.00 2.90
2435 2463 7.342581 TCAGTTCTGGTGGCAAATATAATACA 58.657 34.615 0.00 0.00 0.00 2.29
2436 2464 7.041098 CCTCAGTTCTGGTGGCAAATATAATAC 60.041 40.741 0.00 0.00 0.00 1.89
2437 2465 6.998074 CCTCAGTTCTGGTGGCAAATATAATA 59.002 38.462 0.00 0.00 0.00 0.98
2438 2466 5.829924 CCTCAGTTCTGGTGGCAAATATAAT 59.170 40.000 0.00 0.00 0.00 1.28
2439 2467 5.192927 CCTCAGTTCTGGTGGCAAATATAA 58.807 41.667 0.00 0.00 0.00 0.98
2440 2468 4.385199 CCCTCAGTTCTGGTGGCAAATATA 60.385 45.833 0.00 0.00 0.00 0.86
2441 2469 3.624777 CCTCAGTTCTGGTGGCAAATAT 58.375 45.455 0.00 0.00 0.00 1.28
2442 2470 2.290896 CCCTCAGTTCTGGTGGCAAATA 60.291 50.000 0.00 0.00 0.00 1.40
2443 2471 1.548582 CCCTCAGTTCTGGTGGCAAAT 60.549 52.381 0.00 0.00 0.00 2.32
2444 2472 0.178992 CCCTCAGTTCTGGTGGCAAA 60.179 55.000 0.00 0.00 0.00 3.68
2445 2473 1.059584 TCCCTCAGTTCTGGTGGCAA 61.060 55.000 0.00 0.00 0.00 4.52
2446 2474 1.059584 TTCCCTCAGTTCTGGTGGCA 61.060 55.000 0.00 0.00 0.00 4.92
2447 2475 0.329596 ATTCCCTCAGTTCTGGTGGC 59.670 55.000 0.00 0.00 0.00 5.01
2448 2476 2.887151 AATTCCCTCAGTTCTGGTGG 57.113 50.000 0.00 3.54 0.00 4.61
2449 2477 6.840780 AAATTAATTCCCTCAGTTCTGGTG 57.159 37.500 0.10 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.