AutoCloner

Multiple sequence alignment - TraesCS3B01G591900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G591900	chr3B	100.000	3046	0	0	1	3046	816263585	816266630	0.000000e+00	5626.0
1	TraesCS3B01G591900	chr3B	94.860	1109	50	3	946	2049	816692131	816691025	0.000000e+00	1725.0
2	TraesCS3B01G591900	chr3B	98.036	560	11	0	2487	3046	782750365	782750924	0.000000e+00	974.0
3	TraesCS3B01G591900	chr3B	97.849	558	12	0	2489	3046	700990632	700991189	0.000000e+00	965.0
4	TraesCS3B01G591900	chr3B	87.988	333	25	9	2050	2368	816690986	816690655	2.220000e-101	379.0
5	TraesCS3B01G591900	chr3B	82.451	359	44	8	2486	2843	818525406	818525066	2.300000e-76	296.0
6	TraesCS3B01G591900	chr3B	84.956	226	33	1	2487	2711	121644349	121644574	8.500000e-56	228.0
7	TraesCS3B01G591900	chr3D	93.950	1438	59	9	632	2049	606929655	606931084	0.000000e+00	2148.0
8	TraesCS3B01G591900	chr3D	94.665	1106	54	1	944	2049	607310498	607309398	0.000000e+00	1711.0
9	TraesCS3B01G591900	chr3D	95.114	307	14	1	2488	2794	565404933	565404628	1.640000e-132	483.0
10	TraesCS3B01G591900	chr3D	86.667	450	31	10	2074	2495	606931215	606931663	3.550000e-129	472.0
11	TraesCS3B01G591900	chr3D	85.747	442	36	8	2071	2486	607309282	607308842	2.790000e-120	442.0
12	TraesCS3B01G591900	chr3D	94.964	139	7	0	2908	3046	565404638	565404500	5.110000e-53	219.0
13	TraesCS3B01G591900	chr3D	93.333	75	5	0	2050	2124	606931123	606931197	8.930000e-21	111.0
14	TraesCS3B01G591900	chr3D	80.508	118	14	8	27	139	607315267	607315154	7.000000e-12	82.4
15	TraesCS3B01G591900	chr3A	93.761	1106	61	3	946	2049	739735092	739733993	0.000000e+00	1653.0
16	TraesCS3B01G591900	chr3A	92.899	676	36	9	946	1616	739322530	739323198	0.000000e+00	972.0
17	TraesCS3B01G591900	chr3A	85.714	959	72	23	3	941	739321577	739322490	0.000000e+00	952.0
18	TraesCS3B01G591900	chr3A	86.968	376	15	8	2068	2424	739325411	739325771	2.850000e-105	392.0
19	TraesCS3B01G591900	chr3A	85.311	354	27	11	2143	2486	739733810	739733472	2.910000e-90	342.0
20	TraesCS3B01G591900	chr3A	84.615	195	25	4	699	892	739737265	739737075	4.010000e-44	189.0
21	TraesCS3B01G591900	chr3A	84.043	94	9	6	27	117	739739293	739739203	5.410000e-13	86.1
22	TraesCS3B01G591900	chr1A	84.079	1118	129	22	954	2049	406189742	406190832	0.000000e+00	1033.0
23	TraesCS3B01G591900	chr1B	84.025	1108	123	25	954	2049	327024346	327023281	0.000000e+00	1016.0
24	TraesCS3B01G591900	chr1B	89.194	620	66	1	954	1572	435194368	435194987	0.000000e+00	773.0
25	TraesCS3B01G591900	chr1B	90.698	559	40	8	2488	3046	114430623	114431169	0.000000e+00	734.0
26	TraesCS3B01G591900	chr1B	82.292	384	39	14	1677	2049	435195411	435195776	3.820000e-79	305.0
27	TraesCS3B01G591900	chr4B	97.857	560	12	0	2487	3046	104442045	104442604	0.000000e+00	968.0
28	TraesCS3B01G591900	chr1D	93.560	559	31	2	2488	3046	26598257	26598810	0.000000e+00	828.0
29	TraesCS3B01G591900	chr1D	89.799	598	57	2	954	1550	322285401	322285995	0.000000e+00	763.0
30	TraesCS3B01G591900	chr1D	89.465	598	61	2	954	1550	227130639	227130043	0.000000e+00	754.0
31	TraesCS3B01G591900	chr1D	82.544	401	45	8	1658	2049	227129634	227129250	2.260000e-86	329.0
32	TraesCS3B01G591900	chr1D	81.733	427	47	18	1636	2049	322286055	322286463	8.140000e-86	327.0
33	TraesCS3B01G591900	chr5B	85.398	226	32	1	2487	2711	427179279	427179054	1.830000e-57	233.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G591900	chr3B	816263585	816266630	3045	False	5626.000000	5626	100.000000	1	3046	1	chr3B.!!$F4	3045
1	TraesCS3B01G591900	chr3B	816690655	816692131	1476	True	1052.000000	1725	91.424000	946	2368	2	chr3B.!!$R2	1422
2	TraesCS3B01G591900	chr3B	782750365	782750924	559	False	974.000000	974	98.036000	2487	3046	1	chr3B.!!$F3	559
3	TraesCS3B01G591900	chr3B	700990632	700991189	557	False	965.000000	965	97.849000	2489	3046	1	chr3B.!!$F2	557
4	TraesCS3B01G591900	chr3D	607308842	607310498	1656	True	1076.500000	1711	90.206000	944	2486	2	chr3D.!!$R3	1542
5	TraesCS3B01G591900	chr3D	606929655	606931663	2008	False	910.333333	2148	91.316667	632	2495	3	chr3D.!!$F1	1863
6	TraesCS3B01G591900	chr3A	739321577	739325771	4194	False	772.000000	972	88.527000	3	2424	3	chr3A.!!$F1	2421
7	TraesCS3B01G591900	chr3A	739733472	739739293	5821	True	567.525000	1653	86.932500	27	2486	4	chr3A.!!$R1	2459
8	TraesCS3B01G591900	chr1A	406189742	406190832	1090	False	1033.000000	1033	84.079000	954	2049	1	chr1A.!!$F1	1095
9	TraesCS3B01G591900	chr1B	327023281	327024346	1065	True	1016.000000	1016	84.025000	954	2049	1	chr1B.!!$R1	1095
10	TraesCS3B01G591900	chr1B	114430623	114431169	546	False	734.000000	734	90.698000	2488	3046	1	chr1B.!!$F1	558
11	TraesCS3B01G591900	chr1B	435194368	435195776	1408	False	539.000000	773	85.743000	954	2049	2	chr1B.!!$F2	1095
12	TraesCS3B01G591900	chr4B	104442045	104442604	559	False	968.000000	968	97.857000	2487	3046	1	chr4B.!!$F1	559
13	TraesCS3B01G591900	chr1D	26598257	26598810	553	False	828.000000	828	93.560000	2488	3046	1	chr1D.!!$F1	558
14	TraesCS3B01G591900	chr1D	322285401	322286463	1062	False	545.000000	763	85.766000	954	2049	2	chr1D.!!$F2	1095
15	TraesCS3B01G591900	chr1D	227129250	227130639	1389	True	541.500000	754	86.004500	954	2049	2	chr1D.!!$R1	1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
411	1625	0.73288	CAAATCTGTCGACGCCGAGT	60.733	55.0	11.62	3.82	46.52	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2306	8094	0.249447	AAAAACAAGGCGAGCTTGGC	60.249	50.0	19.74	19.74	36.23	4.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	5.922544	GGATCGCAATGAGGAAATAAAATGG	59.077	40.000	0.00	0.00	0.00	3.16
82	83	5.220643	CCAGGAATTGCAAAAGTTTGTGTTC	60.221	40.000	1.71	0.00	40.24	3.18
118	120	3.424433	GGAATAGCAAAACGTGGAGTTCG	60.424	47.826	0.00	0.00	43.37	3.95
195	1289	3.402681	CCCCACCACCGAGCTCAT	61.403	66.667	15.40	0.00	0.00	2.90
233	1327	1.153429	CACACCCTAACCCTAGCGC	60.153	63.158	0.00	0.00	0.00	5.92
236	1330	4.603946	CCCTAACCCTAGCGCCGC	62.604	72.222	2.29	0.00	0.00	6.53
238	1332	4.603946	CTAACCCTAGCGCCGCCC	62.604	72.222	4.98	0.00	0.00	6.13
310	1423	4.436998	CCGCCACTCCCACGAGAC	62.437	72.222	0.00	0.00	38.52	3.36
325	1438	4.803426	GACCAGCGCTGTCCCGAG	62.803	72.222	33.75	20.43	0.00	4.63
377	1591	1.336632	GGTGAGCTCAGCCAGATCCT	61.337	60.000	31.17	0.00	36.62	3.24
411	1625	0.732880	CAAATCTGTCGACGCCGAGT	60.733	55.000	11.62	3.82	46.52	4.18
439	1653	6.059484	TCTGCTGCATCTGATTTTGATATGA	58.941	36.000	1.31	0.00	0.00	2.15
441	1655	7.230712	TCTGCTGCATCTGATTTTGATATGATT	59.769	33.333	1.31	0.00	0.00	2.57
498	1723	2.350738	TCACCGAGCTGTGATGTGA	58.649	52.632	2.87	0.36	40.22	3.58
515	1740	8.458052	TGTGATGTGATGTGTAAATTTATCCAC	58.542	33.333	10.53	10.53	0.00	4.02
516	1741	8.677300	GTGATGTGATGTGTAAATTTATCCACT	58.323	33.333	15.85	5.92	0.00	4.00
526	1751	8.443937	GTGTAAATTTATCCACTGTTCTGTCTC	58.556	37.037	0.31	0.00	0.00	3.36
527	1752	8.375506	TGTAAATTTATCCACTGTTCTGTCTCT	58.624	33.333	0.31	0.00	0.00	3.10
534	1759	2.230025	CACTGTTCTGTCTCTCACCGAT	59.770	50.000	0.00	0.00	0.00	4.18
539	1764	2.087646	TCTGTCTCTCACCGATCTGTG	58.912	52.381	10.76	10.76	37.59	3.66
565	1790	0.827925	TTGCTGTGTCCCTCTCGAGT	60.828	55.000	13.13	0.00	0.00	4.18
616	1856	4.504097	GCTTACTCCAAAACTGCAAACAAG	59.496	41.667	0.00	0.00	0.00	3.16
721	2240	7.795431	TTCTTGCGCAGAAATGTTAAAATAG	57.205	32.000	11.31	0.00	38.68	1.73
722	2241	6.908825	TCTTGCGCAGAAATGTTAAAATAGT	58.091	32.000	11.31	0.00	0.00	2.12
723	2242	8.035165	TCTTGCGCAGAAATGTTAAAATAGTA	57.965	30.769	11.31	0.00	0.00	1.82
724	2243	8.673711	TCTTGCGCAGAAATGTTAAAATAGTAT	58.326	29.630	11.31	0.00	0.00	2.12
725	2244	8.613613	TTGCGCAGAAATGTTAAAATAGTATG	57.386	30.769	11.31	0.00	0.00	2.39
782	2302	7.377398	TGTCACCATTCACAATTAGAAATTGG	58.623	34.615	14.87	9.33	33.44	3.16
790	2310	3.443681	ACAATTAGAAATTGGGACAGGCG	59.556	43.478	14.87	0.00	42.39	5.52
908	4326	7.837202	TTAAGGACAAATACGTAGTGGAATG	57.163	36.000	4.06	0.00	45.73	2.67
937	4367	5.717038	GTTTCACCAAACAAACCAATCAG	57.283	39.130	0.00	0.00	41.53	2.90
938	4368	5.415221	GTTTCACCAAACAAACCAATCAGA	58.585	37.500	0.00	0.00	41.53	3.27
1092	4563	1.149148	GTCTTGCACGAGAAAGGTCC	58.851	55.000	0.33	0.00	30.72	4.46
1098	4569	1.205893	GCACGAGAAAGGTCCATCTCT	59.794	52.381	17.76	5.41	39.92	3.10
1195	4666	2.159379	GCGGATGAAATTGTTGGACTCC	60.159	50.000	0.00	0.00	0.00	3.85
1273	4744	3.386768	AGCTACGTGCAGAGAAAGAAA	57.613	42.857	0.00	0.00	45.94	2.52
1372	4843	3.181462	TGCCTTGCATCTACGATCTGAAT	60.181	43.478	0.00	0.00	31.71	2.57
1395	4866	3.688235	AGGTACGCTAGAGTCTTTGAGT	58.312	45.455	1.06	2.81	0.00	3.41
1525	5000	4.099113	AGGAACTAATTCGTGCTAGGTACC	59.901	45.833	2.73	2.73	36.02	3.34
1526	5001	4.142093	GGAACTAATTCGTGCTAGGTACCA	60.142	45.833	15.94	0.00	35.48	3.25
1546	5021	3.056607	CCAAACCATCCTGGATTGTGTTC	60.057	47.826	13.59	0.00	45.46	3.18
1893	5823	6.751514	TGTGGCTAACCTGTATGTTTAATG	57.248	37.500	0.00	0.00	36.63	1.90
1931	5863	0.318784	GCTATGGAGCTTACGGACCG	60.319	60.000	13.61	13.61	45.98	4.79
2021	7557	2.763215	GGTGCTGGACCATGGGAA	59.237	61.111	18.09	0.00	45.34	3.97
2057	7631	3.649073	GCGCCCTTGATTTACAAAGTTT	58.351	40.909	0.00	0.00	38.08	2.66
2174	7934	1.147817	AGGCTGTGGACCCTTTTGATT	59.852	47.619	0.00	0.00	0.00	2.57
2187	7957	6.012745	ACCCTTTTGATTCTGTTGCTAATCT	58.987	36.000	0.00	0.00	34.00	2.40
2215	7985	0.592247	GGCGAACATTATTGCCTGCG	60.592	55.000	0.00	0.00	45.07	5.18
2260	8044	1.127951	GCATTGCTGCTTTGTTCATGC	59.872	47.619	0.16	0.27	45.32	4.06
2261	8045	2.683968	CATTGCTGCTTTGTTCATGCT	58.316	42.857	0.00	0.00	0.00	3.79
2262	8046	2.143008	TTGCTGCTTTGTTCATGCTG	57.857	45.000	0.00	0.00	0.00	4.41
2268	8055	3.485394	TGCTTTGTTCATGCTGAAGGTA	58.515	40.909	0.00	0.00	37.00	3.08
2299	8087	6.759497	AGGATAACAGCAACCTAATGTTTC	57.241	37.500	0.00	0.00	38.14	2.78
2306	8094	2.845967	GCAACCTAATGTTTCGCATTCG	59.154	45.455	0.00	0.00	43.86	3.34
2309	8097	1.400142	CCTAATGTTTCGCATTCGCCA	59.600	47.619	0.00	0.00	43.86	5.69
2311	8099	1.981254	AATGTTTCGCATTCGCCAAG	58.019	45.000	0.00	0.00	43.86	3.61
2355	8144	9.496873	TTCTTAGTACAAATTCGAATGGAGAAA	57.503	29.630	12.25	0.60	0.00	2.52
2383	8172	3.625764	TGGTACACAGCACAAGTTTTCTC	59.374	43.478	0.00	0.00	0.00	2.87
2417	8206	3.557264	GGTCCCTAAACAAGTGTGGAGAG	60.557	52.174	0.00	0.00	0.00	3.20
2461	8268	1.600356	TGCCTCAGAATTGCGTGCA	60.600	52.632	0.00	0.00	0.00	4.57
2586	8393	8.472413	ACCGCTAGTATTTTACTCTGTATTTGA	58.528	33.333	0.00	0.00	40.14	2.69
2667	8474	2.107750	CGTCATCCTCGCAGCCAT	59.892	61.111	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	6.035975	GGTTTCCATTTTATTTCCTCATTGCG	59.964	38.462	0.00	0.00	0.00	4.85
118	120	5.048713	CCCCCTCAACAAAAGATAATATCGC	60.049	44.000	0.00	0.00	0.00	4.58
120	122	8.533569	TTTCCCCCTCAACAAAAGATAATATC	57.466	34.615	0.00	0.00	0.00	1.63
169	1263	4.041762	GTGGTGGGGAATGGCCGA	62.042	66.667	0.00	0.00	37.63	5.54
214	1308	1.153429	CGCTAGGGTTAGGGTGTGC	60.153	63.158	0.00	0.00	35.67	4.57
255	1349	4.899239	GATGGAGGCGGCGGTCAG	62.899	72.222	9.78	0.00	0.00	3.51
310	1423	4.803426	GACTCGGGACAGCGCTGG	62.803	72.222	38.27	22.81	34.19	4.85
351	1565	1.138671	GCTGAGCTCACCTCGAGAC	59.861	63.158	13.74	0.00	45.45	3.36
356	1570	0.104671	GATCTGGCTGAGCTCACCTC	59.895	60.000	25.75	16.46	41.15	3.85
411	1625	4.278919	TCAAAATCAGATGCAGCAGAACAA	59.721	37.500	4.07	0.00	0.00	2.83
439	1653	4.260375	GCATCGTTAGCTCGACATCAAAAT	60.260	41.667	0.00	0.00	42.56	1.82
441	1655	2.603110	GCATCGTTAGCTCGACATCAAA	59.397	45.455	0.00	0.00	42.56	2.69
493	1718	8.579850	ACAGTGGATAAATTTACACATCACAT	57.420	30.769	16.79	5.89	36.35	3.21
498	1723	8.635765	ACAGAACAGTGGATAAATTTACACAT	57.364	30.769	16.79	6.07	36.35	3.21
515	1740	2.752354	AGATCGGTGAGAGACAGAACAG	59.248	50.000	0.00	0.00	32.08	3.16
516	1741	2.489722	CAGATCGGTGAGAGACAGAACA	59.510	50.000	0.00	0.00	32.08	3.18
526	1751	2.306341	ATTCTGCACAGATCGGTGAG	57.694	50.000	27.24	19.91	41.32	3.51
527	1752	2.743664	CAAATTCTGCACAGATCGGTGA	59.256	45.455	27.24	12.60	41.32	4.02
559	1784	2.015736	AGCACAATAGCCAACTCGAG	57.984	50.000	11.84	11.84	34.23	4.04
565	1790	1.134250	TCGGCATAGCACAATAGCCAA	60.134	47.619	0.00	0.00	45.47	4.52
599	1839	4.493547	CTTCACTTGTTTGCAGTTTTGGA	58.506	39.130	0.00	0.00	0.00	3.53
616	1856	5.180117	TCTTTTGAGCATAACAGAGCTTCAC	59.820	40.000	0.00	0.00	42.04	3.18
667	2145	5.279456	GGAAACATAACCTCCACTGCAAAAT	60.279	40.000	0.00	0.00	0.00	1.82
782	2302	2.740055	CACAGTCAGCGCCTGTCC	60.740	66.667	13.89	3.78	41.10	4.02
908	4326	2.483583	TGTTTGGTGAAACATGACGC	57.516	45.000	0.00	0.00	45.26	5.19
937	4367	4.670227	ATAAGAGCTCAAGCACGTTTTC	57.330	40.909	17.77	0.00	45.16	2.29
938	4368	4.757149	AGAATAAGAGCTCAAGCACGTTTT	59.243	37.500	17.77	0.10	45.16	2.43
1092	4563	0.932123	CGATGCGTCGTGGAGAGATG	60.932	60.000	20.17	0.00	42.78	2.90
1195	4666	0.238289	AAACGAGACATTGCTTGCCG	59.762	50.000	0.00	0.00	0.00	5.69
1257	4728	5.615544	CGATTCAATTTCTTTCTCTGCACGT	60.616	40.000	0.00	0.00	0.00	4.49
1273	4744	2.102252	GAGTCAGCTCCCTCGATTCAAT	59.898	50.000	0.00	0.00	35.76	2.57
1372	4843	5.251764	ACTCAAAGACTCTAGCGTACCTAA	58.748	41.667	0.00	0.00	0.00	2.69
1538	5013	3.619979	GCCTACTGTAGCAGGAACACAAT	60.620	47.826	9.35	0.00	35.51	2.71
1546	5021	1.482182	TGATGTGCCTACTGTAGCAGG	59.518	52.381	9.35	0.00	40.28	4.85
1893	5823	1.305930	CCGCTGACCCCTAAAAGTGC	61.306	60.000	0.00	0.00	0.00	4.40
2057	7631	5.616270	AGCTTCAGTACGAGAGATATCAGA	58.384	41.667	5.32	0.00	0.00	3.27
2069	7643	0.512952	GCACCACAAGCTTCAGTACG	59.487	55.000	0.00	0.00	0.00	3.67
2137	7847	4.042934	ACAGCCTGTTAAGTACAATTCCCT	59.957	41.667	0.00	0.00	36.02	4.20
2138	7848	4.156008	CACAGCCTGTTAAGTACAATTCCC	59.844	45.833	0.00	0.00	36.02	3.97
2174	7934	6.158598	GCCAATCAAAAAGATTAGCAACAGA	58.841	36.000	3.91	0.00	46.44	3.41
2187	7957	5.121454	GGCAATAATGTTCGCCAATCAAAAA	59.879	36.000	0.00	0.00	44.25	1.94
2198	7968	2.823196	TTCGCAGGCAATAATGTTCG	57.177	45.000	0.00	0.00	0.00	3.95
2215	7985	1.174712	TGCAGCAGCCCTCACTTTTC	61.175	55.000	0.00	0.00	41.13	2.29
2256	8040	5.674525	TCCTTATTCACTACCTTCAGCATG	58.325	41.667	0.00	0.00	37.54	4.06
2257	8041	5.957771	TCCTTATTCACTACCTTCAGCAT	57.042	39.130	0.00	0.00	0.00	3.79
2258	8042	5.957771	ATCCTTATTCACTACCTTCAGCA	57.042	39.130	0.00	0.00	0.00	4.41
2259	8043	7.272978	TGTTATCCTTATTCACTACCTTCAGC	58.727	38.462	0.00	0.00	0.00	4.26
2260	8044	7.439655	GCTGTTATCCTTATTCACTACCTTCAG	59.560	40.741	0.00	0.00	0.00	3.02
2261	8045	7.093068	TGCTGTTATCCTTATTCACTACCTTCA	60.093	37.037	0.00	0.00	0.00	3.02
2262	8046	7.272978	TGCTGTTATCCTTATTCACTACCTTC	58.727	38.462	0.00	0.00	0.00	3.46
2268	8055	6.067217	AGGTTGCTGTTATCCTTATTCACT	57.933	37.500	0.00	0.00	0.00	3.41
2299	8087	4.876081	GCGAGCTTGGCGAATGCG	62.876	66.667	2.37	0.00	44.10	4.73
2306	8094	0.249447	AAAAACAAGGCGAGCTTGGC	60.249	50.000	19.74	19.74	36.23	4.52
2309	8097	2.959507	AACAAAAACAAGGCGAGCTT	57.040	40.000	0.00	0.00	0.00	3.74
2311	8099	3.186909	AGAAAACAAAAACAAGGCGAGC	58.813	40.909	0.00	0.00	0.00	5.03
2442	8249	1.154150	GCACGCAATTCTGAGGCAC	60.154	57.895	0.00	0.00	0.00	5.01
2586	8393	4.069304	TGAAAAAGCCGCACATACTACTT	58.931	39.130	0.00	0.00	0.00	2.24
2667	8474	0.390340	GCAACGCTCCATCTGAGTCA	60.390	55.000	0.00	0.00	43.48	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.