Multiple sequence alignment - TraesCS3B01G591000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G591000 chr3B 100.000 6827 0 0 1 6827 815877142 815870316 0.000000e+00 12608.0
1 TraesCS3B01G591000 chr3B 84.307 1746 215 26 4102 5832 659081446 659079745 0.000000e+00 1652.0
2 TraesCS3B01G591000 chr3B 84.440 1099 154 10 4740 5836 683759975 683761058 0.000000e+00 1066.0
3 TraesCS3B01G591000 chr3B 84.182 1100 154 12 4740 5836 684096977 684098059 0.000000e+00 1050.0
4 TraesCS3B01G591000 chr3B 80.422 332 49 12 1677 1997 99676145 99676471 8.850000e-59 239.0
5 TraesCS3B01G591000 chr3B 77.389 314 45 18 107 415 659081797 659081505 5.480000e-36 163.0
6 TraesCS3B01G591000 chr3A 94.639 4365 136 24 1817 6142 737972321 737968016 0.000000e+00 6674.0
7 TraesCS3B01G591000 chr3A 93.691 1157 43 4 663 1818 737973306 737972179 0.000000e+00 1705.0
8 TraesCS3B01G591000 chr3A 83.062 1842 226 41 4065 5871 638334940 638333150 0.000000e+00 1594.0
9 TraesCS3B01G591000 chr3A 84.166 1061 138 11 4756 5814 654359815 654360847 0.000000e+00 1002.0
10 TraesCS3B01G591000 chr3A 83.297 922 140 7 4915 5836 654389641 654390548 0.000000e+00 837.0
11 TraesCS3B01G591000 chr3A 90.526 570 36 10 108 664 737973954 737973390 0.000000e+00 737.0
12 TraesCS3B01G591000 chr3A 90.566 477 38 5 2 472 737974326 737973851 5.810000e-175 625.0
13 TraesCS3B01G591000 chr3A 91.204 216 15 4 6419 6633 737952124 737951912 2.410000e-74 291.0
14 TraesCS3B01G591000 chr3A 88.820 161 17 1 6665 6825 737951798 737951639 5.400000e-46 196.0
15 TraesCS3B01G591000 chr3A 75.658 304 50 19 133 432 638335221 638334938 5.560000e-26 130.0
16 TraesCS3B01G591000 chr3D 95.245 3512 110 22 2742 6219 606298122 606301610 0.000000e+00 5507.0
17 TraesCS3B01G591000 chr3D 84.185 1840 218 38 4065 5871 498207930 498206131 0.000000e+00 1718.0
18 TraesCS3B01G591000 chr3D 95.407 958 38 4 725 1678 606296797 606297752 0.000000e+00 1520.0
19 TraesCS3B01G591000 chr3D 87.731 921 113 0 4756 5676 519335502 519336422 0.000000e+00 1075.0
20 TraesCS3B01G591000 chr3D 84.047 1097 160 7 4740 5836 519354386 519355467 0.000000e+00 1042.0
21 TraesCS3B01G591000 chr3D 90.864 405 33 3 6419 6821 606304000 606304402 2.170000e-149 540.0
22 TraesCS3B01G591000 chr3D 82.560 539 62 18 160 672 606296149 606296681 4.860000e-121 446.0
23 TraesCS3B01G591000 chr3D 89.426 331 13 7 1995 2307 606297750 606298076 1.380000e-106 398.0
24 TraesCS3B01G591000 chr3D 82.487 394 57 7 4102 4493 519364672 519365055 1.100000e-87 335.0
25 TraesCS3B01G591000 chr3D 87.415 294 24 11 1677 1961 376343571 376343282 6.600000e-85 326.0
26 TraesCS3B01G591000 chr3D 86.893 206 20 5 4713 4913 519338061 519338264 2.480000e-54 224.0
27 TraesCS3B01G591000 chr3D 88.571 140 16 0 5450 5589 606306871 606307010 3.270000e-38 171.0
28 TraesCS3B01G591000 chr3D 100.000 47 0 0 663 709 606296755 606296801 3.390000e-13 87.9
29 TraesCS3B01G591000 chr3D 94.444 54 3 0 2350 2403 606298069 606298122 4.390000e-12 84.2
30 TraesCS3B01G591000 chr3D 79.121 91 12 5 112 201 606296375 606296459 1.000000e-03 56.5
31 TraesCS3B01G591000 chr5D 90.125 719 39 7 2742 3432 496907961 496907247 0.000000e+00 905.0
32 TraesCS3B01G591000 chr5D 88.814 447 18 9 1995 2423 496908394 496907962 2.820000e-143 520.0
33 TraesCS3B01G591000 chr5D 96.341 82 3 0 1597 1678 496908473 496908392 1.190000e-27 135.0
34 TraesCS3B01G591000 chr2D 85.385 390 30 11 1995 2357 582154919 582154530 5.000000e-101 379.0
35 TraesCS3B01G591000 chr2D 92.713 247 18 0 1432 1678 582155163 582154917 2.340000e-94 357.0
36 TraesCS3B01G591000 chr2D 81.928 332 46 11 1676 1997 467451825 467451498 1.130000e-67 268.0
37 TraesCS3B01G591000 chr7B 87.774 319 37 2 2426 2742 612607500 612607818 8.360000e-99 372.0
38 TraesCS3B01G591000 chr7B 86.645 307 37 4 2428 2732 713133437 713133741 3.050000e-88 337.0
39 TraesCS3B01G591000 chr6D 84.694 392 31 12 1995 2357 429398158 429397767 1.400000e-96 364.0
40 TraesCS3B01G591000 chr6D 91.532 248 19 2 1432 1678 429398402 429398156 2.360000e-89 340.0
41 TraesCS3B01G591000 chr6B 86.624 314 38 3 1687 1997 146665162 146665474 1.820000e-90 344.0
42 TraesCS3B01G591000 chr6B 85.113 309 34 9 1677 1979 228695837 228695535 8.600000e-79 305.0
43 TraesCS3B01G591000 chr2B 85.455 330 40 7 1677 2002 25347689 25347364 3.050000e-88 337.0
44 TraesCS3B01G591000 chr2B 85.106 329 41 6 1675 1997 161143862 161144188 5.100000e-86 329.0
45 TraesCS3B01G591000 chr2A 84.639 319 29 15 1672 1978 688640829 688641139 4.000000e-77 300.0
46 TraesCS3B01G591000 chrUn 85.507 276 32 6 1728 1998 302653017 302653289 1.450000e-71 281.0
47 TraesCS3B01G591000 chrUn 85.507 276 32 6 1728 1998 304066218 304066490 1.450000e-71 281.0
48 TraesCS3B01G591000 chr7A 85.551 263 34 4 2488 2746 691435798 691435536 8.720000e-69 272.0
49 TraesCS3B01G591000 chr7A 80.645 155 26 1 2575 2725 462988383 462988537 4.330000e-22 117.0
50 TraesCS3B01G591000 chr4D 83.121 314 32 13 2435 2743 5663461 5663758 4.060000e-67 267.0
51 TraesCS3B01G591000 chr4D 96.774 31 1 0 2503 2533 440675742 440675712 1.200000e-02 52.8
52 TraesCS3B01G591000 chr7D 85.377 212 21 4 2534 2745 589624822 589625023 1.930000e-50 211.0
53 TraesCS3B01G591000 chr1B 93.182 44 3 0 6581 6624 345906501 345906544 1.590000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G591000 chr3B 815870316 815877142 6826 True 12608.000000 12608 100.000000 1 6827 1 chr3B.!!$R1 6826
1 TraesCS3B01G591000 chr3B 683759975 683761058 1083 False 1066.000000 1066 84.440000 4740 5836 1 chr3B.!!$F2 1096
2 TraesCS3B01G591000 chr3B 684096977 684098059 1082 False 1050.000000 1050 84.182000 4740 5836 1 chr3B.!!$F3 1096
3 TraesCS3B01G591000 chr3B 659079745 659081797 2052 True 907.500000 1652 80.848000 107 5832 2 chr3B.!!$R2 5725
4 TraesCS3B01G591000 chr3A 737968016 737974326 6310 True 2435.250000 6674 92.355500 2 6142 4 chr3A.!!$R3 6140
5 TraesCS3B01G591000 chr3A 654359815 654360847 1032 False 1002.000000 1002 84.166000 4756 5814 1 chr3A.!!$F1 1058
6 TraesCS3B01G591000 chr3A 638333150 638335221 2071 True 862.000000 1594 79.360000 133 5871 2 chr3A.!!$R1 5738
7 TraesCS3B01G591000 chr3A 654389641 654390548 907 False 837.000000 837 83.297000 4915 5836 1 chr3A.!!$F2 921
8 TraesCS3B01G591000 chr3D 498206131 498207930 1799 True 1718.000000 1718 84.185000 4065 5871 1 chr3D.!!$R2 1806
9 TraesCS3B01G591000 chr3D 519354386 519355467 1081 False 1042.000000 1042 84.047000 4740 5836 1 chr3D.!!$F1 1096
10 TraesCS3B01G591000 chr3D 606296149 606307010 10861 False 978.955556 5507 90.626444 112 6821 9 chr3D.!!$F4 6709
11 TraesCS3B01G591000 chr3D 519335502 519338264 2762 False 649.500000 1075 87.312000 4713 5676 2 chr3D.!!$F3 963
12 TraesCS3B01G591000 chr5D 496907247 496908473 1226 True 520.000000 905 91.760000 1597 3432 3 chr5D.!!$R1 1835
13 TraesCS3B01G591000 chr2D 582154530 582155163 633 True 368.000000 379 89.049000 1432 2357 2 chr2D.!!$R2 925
14 TraesCS3B01G591000 chr6D 429397767 429398402 635 True 352.000000 364 88.113000 1432 2357 2 chr6D.!!$R1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.396435 TGTGCACTGTGAAGTAGGGG 59.604 55.000 19.41 0.00 0.00 4.79 F
1557 1939 0.038166 TGTCCCTCAGGTTCCATTGC 59.962 55.000 0.00 0.00 0.00 3.56 F
2687 3107 0.030638 CCAGGCAACCAAACAACTCG 59.969 55.000 0.00 0.00 37.17 4.18 F
2699 3119 0.172803 ACAACTCGCTACTTAGCCCG 59.827 55.000 2.63 0.00 46.34 6.13 F
3805 4256 1.153958 GAGAACAAGGGCAATGCGC 60.154 57.895 14.75 14.75 41.91 6.09 F
4408 4886 1.280746 CTATGCAAATGGCTCCGCG 59.719 57.895 0.00 0.00 45.15 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 2044 0.179000 GGAGTACATCACTGCTGGGG 59.821 60.000 0.00 0.00 42.10 4.96 R
3096 3521 0.248289 AATGGGACGAGGTAACACCG 59.752 55.000 0.00 0.00 44.90 4.94 R
4405 4883 0.040958 GCCTTGAAATATCTGGCGCG 60.041 55.000 0.00 0.00 36.63 6.86 R
4471 4949 1.818060 TGTACATTGGAACCAGCATGC 59.182 47.619 10.51 10.51 31.97 4.06 R
5281 5760 0.175760 CATCTTTCTTCCCTCGCGGA 59.824 55.000 6.13 0.00 39.68 5.54 R
5988 6486 0.034863 ACGACAACAACCAACACCCT 60.035 50.000 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.237392 GTTACAGTTCCAGATGCCCTCT 59.763 50.000 0.00 0.00 33.14 3.69
43 44 0.874390 CTTTCGCTTTGCTGTGCCTA 59.126 50.000 0.00 0.00 0.00 3.93
49 50 0.883153 CTTTGCTGTGCCTATGTGCA 59.117 50.000 0.00 0.00 39.37 4.57
63 64 0.396435 TGTGCACTGTGAAGTAGGGG 59.604 55.000 19.41 0.00 0.00 4.79
70 71 1.833630 CTGTGAAGTAGGGGCATCTCA 59.166 52.381 0.00 0.00 0.00 3.27
79 80 1.450531 GGGGCATCTCATGGAAAGCG 61.451 60.000 0.00 0.00 32.27 4.68
95 96 2.903357 CGGGCTATGCTGGAGTGT 59.097 61.111 0.00 0.00 0.00 3.55
96 97 2.028125 GCGGGCTATGCTGGAGTGTA 62.028 60.000 0.00 0.00 0.00 2.90
105 106 2.161855 TGCTGGAGTGTATTTGCCTTG 58.838 47.619 0.00 0.00 0.00 3.61
115 116 5.353123 AGTGTATTTGCCTTGTATGGTTACG 59.647 40.000 0.00 0.00 0.00 3.18
131 132 4.142116 TGGTTACGTTCTGAACTGAGTTGA 60.142 41.667 17.60 0.00 0.00 3.18
162 429 1.169661 TGTTCCCGCGCAATTGAGTT 61.170 50.000 10.34 0.00 0.00 3.01
164 431 0.886938 TTCCCGCGCAATTGAGTTGA 60.887 50.000 10.34 1.62 40.37 3.18
165 432 1.135315 CCCGCGCAATTGAGTTGAG 59.865 57.895 10.34 0.00 40.37 3.02
166 433 1.577328 CCCGCGCAATTGAGTTGAGT 61.577 55.000 10.34 0.00 40.37 3.41
168 435 0.453282 CGCGCAATTGAGTTGAGTGG 60.453 55.000 10.34 0.00 42.23 4.00
169 436 0.730494 GCGCAATTGAGTTGAGTGGC 60.730 55.000 10.34 0.00 40.37 5.01
170 437 0.877071 CGCAATTGAGTTGAGTGGCT 59.123 50.000 10.34 0.00 40.37 4.75
171 438 1.400629 CGCAATTGAGTTGAGTGGCTG 60.401 52.381 10.34 0.00 40.37 4.85
247 523 1.641577 GGCAGTGATGTCCGTTACTC 58.358 55.000 0.00 0.00 0.00 2.59
289 565 2.690778 GCGGGCGAGAATTTGCTGT 61.691 57.895 0.00 0.00 33.93 4.40
366 645 0.931202 GTTTGCGTTTGGTGGCGTAC 60.931 55.000 0.00 0.00 0.00 3.67
412 692 1.303561 TGGCAACCAGCTCATGTCC 60.304 57.895 0.00 0.00 44.79 4.02
438 718 1.401905 GCAATTTAGTGGCTTCCCTCG 59.598 52.381 0.00 0.00 0.00 4.63
469 750 9.887406 CCTACTTAATTTTTGTCGTGTTTATGT 57.113 29.630 0.00 0.00 0.00 2.29
600 893 3.215151 GAGCAATACTAAAGGGGAAGGC 58.785 50.000 0.00 0.00 0.00 4.35
622 915 1.069090 TCACTGCACTGAACCGGAC 59.931 57.895 9.46 1.77 0.00 4.79
631 924 1.909302 ACTGAACCGGACATTCCAGAT 59.091 47.619 9.46 0.00 35.91 2.90
648 941 4.988540 TCCAGATTTCTTCGTTGTGTACTG 59.011 41.667 0.00 0.00 0.00 2.74
652 945 4.530094 TTTCTTCGTTGTGTACTGCTTG 57.470 40.909 0.00 0.00 0.00 4.01
660 953 4.319477 CGTTGTGTACTGCTTGCTATTTGT 60.319 41.667 0.00 0.00 0.00 2.83
921 1302 5.055144 CACACTCAGCTACTGCATATTCAT 58.945 41.667 0.00 0.00 42.74 2.57
966 1347 9.878667 TTTGGTATTCGTGAGTTATGAATTCTA 57.121 29.630 7.58 0.00 41.19 2.10
1110 1491 5.392057 GCCTATTCAGAACTACTGCCAAAAC 60.392 44.000 0.00 0.00 45.38 2.43
1280 1661 8.436970 CAGCAAAATATACTTTGTACGTACACA 58.563 33.333 27.36 20.16 38.35 3.72
1321 1702 6.151663 TCCACATTTCATTTATCCATGCTG 57.848 37.500 0.00 0.00 0.00 4.41
1322 1703 5.657745 TCCACATTTCATTTATCCATGCTGT 59.342 36.000 0.00 0.00 0.00 4.40
1323 1704 6.154877 TCCACATTTCATTTATCCATGCTGTT 59.845 34.615 0.00 0.00 0.00 3.16
1324 1705 6.819649 CCACATTTCATTTATCCATGCTGTTT 59.180 34.615 0.00 0.00 0.00 2.83
1533 1915 6.183360 GGCTGACATTTGCATCAACAAAATAG 60.183 38.462 0.00 0.00 42.45 1.73
1557 1939 0.038166 TGTCCCTCAGGTTCCATTGC 59.962 55.000 0.00 0.00 0.00 3.56
1622 2004 6.332976 ACTCAGGGGTCTTGATAATTGAAT 57.667 37.500 0.00 0.00 0.00 2.57
1662 2044 4.039245 TGCATATAAGTAGTCTGCCCTGTC 59.961 45.833 0.00 0.00 31.89 3.51
1683 2065 0.179100 CCAGCAGTGATGTACTCCCG 60.179 60.000 7.74 0.00 37.60 5.14
1697 2079 1.064979 ACTCCCGCCGTTCCAAAATAT 60.065 47.619 0.00 0.00 0.00 1.28
1788 2170 9.448438 AATGCATTTATATACATCCGTATGTGT 57.552 29.630 5.99 0.00 45.99 3.72
1789 2171 8.840833 TGCATTTATATACATCCGTATGTGTT 57.159 30.769 3.56 0.00 45.99 3.32
1790 2172 8.931775 TGCATTTATATACATCCGTATGTGTTC 58.068 33.333 3.56 0.00 45.99 3.18
1791 2173 8.388103 GCATTTATATACATCCGTATGTGTTCC 58.612 37.037 3.56 0.00 45.99 3.62
1792 2174 9.430623 CATTTATATACATCCGTATGTGTTCCA 57.569 33.333 3.56 0.00 45.99 3.53
1796 2178 6.665992 ATACATCCGTATGTGTTCCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
1797 2179 4.693283 ACATCCGTATGTGTTCCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1798 2180 4.404394 ACATCCGTATGTGTTCCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
1799 2181 5.105106 ACATCCGTATGTGTTCCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
1800 2182 5.607939 TCCGTATGTGTTCCATAGTGAAT 57.392 39.130 0.00 0.00 36.71 2.57
1801 2183 5.597806 TCCGTATGTGTTCCATAGTGAATC 58.402 41.667 0.00 0.00 36.71 2.52
1802 2184 5.362717 TCCGTATGTGTTCCATAGTGAATCT 59.637 40.000 0.00 0.00 36.71 2.40
1803 2185 5.692204 CCGTATGTGTTCCATAGTGAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
1804 2186 6.461648 CCGTATGTGTTCCATAGTGAATCTCT 60.462 42.308 0.00 0.00 36.71 3.10
1805 2187 7.255486 CCGTATGTGTTCCATAGTGAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
1806 2188 7.591795 CGTATGTGTTCCATAGTGAATCTCTAC 59.408 40.741 0.00 0.00 36.71 2.59
1807 2189 5.891451 TGTGTTCCATAGTGAATCTCTACG 58.109 41.667 0.00 0.00 0.00 3.51
1808 2190 5.650703 TGTGTTCCATAGTGAATCTCTACGA 59.349 40.000 0.00 0.00 0.00 3.43
1809 2191 6.152154 TGTGTTCCATAGTGAATCTCTACGAA 59.848 38.462 0.00 0.00 0.00 3.85
1810 2192 6.693545 GTGTTCCATAGTGAATCTCTACGAAG 59.306 42.308 0.00 0.00 0.00 3.79
1811 2193 6.602009 TGTTCCATAGTGAATCTCTACGAAGA 59.398 38.462 0.00 0.00 0.00 2.87
1812 2194 7.285629 TGTTCCATAGTGAATCTCTACGAAGAT 59.714 37.037 0.00 0.00 37.61 2.40
1813 2195 7.825331 TCCATAGTGAATCTCTACGAAGATT 57.175 36.000 10.66 10.66 46.23 2.40
1814 2196 8.239038 TCCATAGTGAATCTCTACGAAGATTT 57.761 34.615 11.68 2.71 44.16 2.17
1815 2197 9.350951 TCCATAGTGAATCTCTACGAAGATTTA 57.649 33.333 11.68 6.96 44.16 1.40
1821 2203 9.615295 GTGAATCTCTACGAAGATTTATACTCC 57.385 37.037 11.68 2.07 44.16 3.85
1822 2204 8.794553 TGAATCTCTACGAAGATTTATACTCCC 58.205 37.037 11.68 1.57 44.16 4.30
1823 2205 8.943594 AATCTCTACGAAGATTTATACTCCCT 57.056 34.615 0.00 0.00 42.05 4.20
1824 2206 7.982761 TCTCTACGAAGATTTATACTCCCTC 57.017 40.000 0.00 0.00 0.00 4.30
1825 2207 6.941436 TCTCTACGAAGATTTATACTCCCTCC 59.059 42.308 0.00 0.00 0.00 4.30
1826 2208 4.850347 ACGAAGATTTATACTCCCTCCG 57.150 45.455 0.00 0.00 0.00 4.63
1827 2209 4.213513 ACGAAGATTTATACTCCCTCCGT 58.786 43.478 0.00 0.00 0.00 4.69
1828 2210 4.648307 ACGAAGATTTATACTCCCTCCGTT 59.352 41.667 0.00 0.00 0.00 4.44
1829 2211 5.221130 CGAAGATTTATACTCCCTCCGTTC 58.779 45.833 0.00 0.00 0.00 3.95
1830 2212 5.539979 GAAGATTTATACTCCCTCCGTTCC 58.460 45.833 0.00 0.00 0.00 3.62
1831 2213 4.817286 AGATTTATACTCCCTCCGTTCCT 58.183 43.478 0.00 0.00 0.00 3.36
1832 2214 5.961897 AGATTTATACTCCCTCCGTTCCTA 58.038 41.667 0.00 0.00 0.00 2.94
1833 2215 6.379579 AGATTTATACTCCCTCCGTTCCTAA 58.620 40.000 0.00 0.00 0.00 2.69
1834 2216 6.842807 AGATTTATACTCCCTCCGTTCCTAAA 59.157 38.462 0.00 0.00 0.00 1.85
1835 2217 7.513091 AGATTTATACTCCCTCCGTTCCTAAAT 59.487 37.037 0.00 0.00 0.00 1.40
1836 2218 8.731591 ATTTATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
1837 2219 8.731591 TTTATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
1838 2220 9.827198 TTTATACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
1839 2221 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
1840 2222 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1841 2223 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1842 2224 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1843 2225 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1844 2226 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1845 2227 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1846 2228 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1847 2229 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1897 2279 8.812513 TGGATCAAAATGAATGAATCTACACT 57.187 30.769 0.00 0.00 0.00 3.55
1898 2280 8.896744 TGGATCAAAATGAATGAATCTACACTC 58.103 33.333 0.00 0.00 0.00 3.51
1899 2281 9.118300 GGATCAAAATGAATGAATCTACACTCT 57.882 33.333 0.00 0.00 0.00 3.24
1973 2355 9.562408 GAAAGACTTATATTTAGGAAAGGAGGG 57.438 37.037 0.00 0.00 0.00 4.30
1974 2356 8.871570 AAGACTTATATTTAGGAAAGGAGGGA 57.128 34.615 0.00 0.00 0.00 4.20
1975 2357 8.499288 AGACTTATATTTAGGAAAGGAGGGAG 57.501 38.462 0.00 0.00 0.00 4.30
1976 2358 8.074991 AGACTTATATTTAGGAAAGGAGGGAGT 58.925 37.037 0.00 0.00 0.00 3.85
1977 2359 9.377238 GACTTATATTTAGGAAAGGAGGGAGTA 57.623 37.037 0.00 0.00 0.00 2.59
1978 2360 9.915564 ACTTATATTTAGGAAAGGAGGGAGTAT 57.084 33.333 0.00 0.00 0.00 2.12
2327 2744 2.618442 GCTAAGAGCAAGATCTGGCT 57.382 50.000 25.10 25.10 41.89 4.75
2362 2781 3.131400 GGTGAGGTGAGTGTCCTATTCTC 59.869 52.174 0.00 0.00 35.20 2.87
2363 2782 4.020543 GTGAGGTGAGTGTCCTATTCTCT 58.979 47.826 0.00 0.00 35.20 3.10
2405 2824 2.817839 GCCCAGGTTGAACCATAACAGT 60.818 50.000 17.83 0.00 41.95 3.55
2406 2825 3.560453 GCCCAGGTTGAACCATAACAGTA 60.560 47.826 17.83 0.00 41.95 2.74
2484 2903 0.685097 GTGGAGCCTGGTTCAGTGTA 59.315 55.000 12.78 0.00 0.00 2.90
2486 2905 1.278985 TGGAGCCTGGTTCAGTGTATG 59.721 52.381 12.78 0.00 0.00 2.39
2497 2916 0.251354 CAGTGTATGCAGGCTCTGGT 59.749 55.000 12.00 0.00 31.21 4.00
2554 2974 0.115349 AGCTAGCATCCTCCCCGTAT 59.885 55.000 18.83 0.00 0.00 3.06
2604 3024 5.584253 TCTGGAAAAACGGTCAATTTGAA 57.416 34.783 0.00 0.00 0.00 2.69
2639 3059 1.078426 GGCTGAGGGCGCTTTAAGA 60.078 57.895 7.64 0.00 42.94 2.10
2641 3061 0.940833 GCTGAGGGCGCTTTAAGATC 59.059 55.000 7.64 0.00 0.00 2.75
2647 3067 1.012234 GCGCTTTAAGATCCGTGCG 60.012 57.895 0.00 10.40 45.12 5.34
2659 3079 3.726517 CGTGCGGGCCAGTTTCTG 61.727 66.667 4.39 0.00 0.00 3.02
2687 3107 0.030638 CCAGGCAACCAAACAACTCG 59.969 55.000 0.00 0.00 37.17 4.18
2699 3119 0.172803 ACAACTCGCTACTTAGCCCG 59.827 55.000 2.63 0.00 46.34 6.13
3041 3466 8.446599 ACACAACTGTACTAAATTATATGCCC 57.553 34.615 0.00 0.00 0.00 5.36
3042 3467 7.501225 ACACAACTGTACTAAATTATATGCCCC 59.499 37.037 0.00 0.00 0.00 5.80
3096 3521 5.784177 TGACTTATGTGTTCTGACTCTTCC 58.216 41.667 0.00 0.00 0.00 3.46
3187 3614 1.282157 GCCACTGGATGTCCCTTAAGT 59.718 52.381 0.00 0.00 35.38 2.24
3211 3638 9.768662 AGTCTTGAAGTCAATGCAAATAATTTT 57.231 25.926 0.00 0.00 35.02 1.82
3353 3804 8.845227 TGTTGCTTTTCTGATTCAGTATGTTTA 58.155 29.630 13.23 0.00 37.40 2.01
3354 3805 9.846248 GTTGCTTTTCTGATTCAGTATGTTTAT 57.154 29.630 13.23 0.00 37.40 1.40
3632 4083 3.868757 TGTAGAAACTCCAGGACATCG 57.131 47.619 0.00 0.00 0.00 3.84
3805 4256 1.153958 GAGAACAAGGGCAATGCGC 60.154 57.895 14.75 14.75 41.91 6.09
3859 4310 5.195940 GAGGAGATGATTCCAATGGTCAAA 58.804 41.667 0.00 0.00 39.84 2.69
4405 4883 2.923121 TCAGACTATGCAAATGGCTCC 58.077 47.619 0.00 0.00 45.15 4.70
4408 4886 1.280746 CTATGCAAATGGCTCCGCG 59.719 57.895 0.00 0.00 45.15 6.46
4430 4908 4.391216 CGCCAGATATTTCAAGGCTATCTG 59.609 45.833 13.40 13.40 44.26 2.90
4457 4935 4.236935 GAGTTCTGAAGCAAGAGAGTCTG 58.763 47.826 0.00 0.00 0.00 3.51
4462 4940 4.133078 CTGAAGCAAGAGAGTCTGGTTTT 58.867 43.478 0.00 0.00 0.00 2.43
4471 4949 5.372373 AGAGAGTCTGGTTTTGAAGAAAGG 58.628 41.667 0.00 0.00 0.00 3.11
4517 4995 2.297880 TCAGAACAATCGACGGAGGAAA 59.702 45.455 0.00 0.00 0.00 3.13
4523 5001 3.188460 ACAATCGACGGAGGAAACATTTG 59.812 43.478 0.00 0.00 0.00 2.32
4933 5411 1.925847 GAAGCTCAGAGATCAGCAACG 59.074 52.381 0.00 0.00 38.18 4.10
5053 5532 5.299949 ACAGATGCCAAAATCCAAGAAAAC 58.700 37.500 0.00 0.00 0.00 2.43
5281 5760 0.779997 ACTTGCTGGGAAATGGGACT 59.220 50.000 0.00 0.00 0.00 3.85
5682 6165 4.532834 AGAGAAAAGGTTTGCCACTAACA 58.467 39.130 0.00 0.00 37.19 2.41
5689 6172 4.781934 AGGTTTGCCACTAACATCCTATC 58.218 43.478 0.00 0.00 37.19 2.08
5988 6486 1.151921 TCTGGTGTGGGATGGGTGA 60.152 57.895 0.00 0.00 0.00 4.02
5996 6494 1.000896 GGGATGGGTGAGGGTGTTG 60.001 63.158 0.00 0.00 0.00 3.33
5997 6495 1.000896 GGATGGGTGAGGGTGTTGG 60.001 63.158 0.00 0.00 0.00 3.77
5998 6496 1.767692 GATGGGTGAGGGTGTTGGT 59.232 57.895 0.00 0.00 0.00 3.67
6035 6536 6.734137 TGTTGTTGAGATGGTGTATTTTGTC 58.266 36.000 0.00 0.00 0.00 3.18
6106 6620 5.063312 ACTTTGTTGTTTTTGTACATGCTGC 59.937 36.000 0.00 0.00 0.00 5.25
6107 6621 4.383850 TGTTGTTTTTGTACATGCTGCT 57.616 36.364 0.00 0.00 0.00 4.24
6108 6622 4.111198 TGTTGTTTTTGTACATGCTGCTG 58.889 39.130 0.00 0.00 0.00 4.41
6128 6642 4.224433 CTGTTAGCTGATTGTTGCAAGTG 58.776 43.478 0.00 0.00 0.00 3.16
6138 6653 1.230324 GTTGCAAGTGGACTCAGGAC 58.770 55.000 0.00 0.00 0.00 3.85
6151 6666 4.100808 GGACTCAGGACTGCTGATCTATTT 59.899 45.833 0.03 0.00 0.00 1.40
6152 6667 5.021033 ACTCAGGACTGCTGATCTATTTG 57.979 43.478 0.03 0.00 0.00 2.32
6154 6669 5.046014 ACTCAGGACTGCTGATCTATTTGTT 60.046 40.000 0.03 0.00 0.00 2.83
6155 6670 5.181009 TCAGGACTGCTGATCTATTTGTTG 58.819 41.667 0.00 0.00 0.00 3.33
6157 6672 3.242543 GGACTGCTGATCTATTTGTTGCG 60.243 47.826 0.00 0.00 0.00 4.85
6163 6678 2.869192 TGATCTATTTGTTGCGCGCATA 59.131 40.909 36.83 24.16 0.00 3.14
6164 6679 2.730183 TCTATTTGTTGCGCGCATAC 57.270 45.000 36.83 31.23 0.00 2.39
6172 6687 1.861542 TTGCGCGCATACTTTTGCCT 61.862 50.000 36.83 0.00 39.52 4.75
6173 6688 1.154035 GCGCGCATACTTTTGCCTT 60.154 52.632 29.10 0.00 39.52 4.35
6187 6702 6.410540 ACTTTTGCCTTATCTTTCGAGAGAT 58.589 36.000 20.86 20.86 41.60 2.75
6212 6727 3.489355 TCTGTGATTGTGCCTGATGTTT 58.511 40.909 0.00 0.00 0.00 2.83
6223 6738 5.711506 TGTGCCTGATGTTTTGATTGTAGAT 59.288 36.000 0.00 0.00 0.00 1.98
6227 6742 6.349611 GCCTGATGTTTTGATTGTAGATGTGT 60.350 38.462 0.00 0.00 0.00 3.72
6229 6744 8.177663 CCTGATGTTTTGATTGTAGATGTGTAC 58.822 37.037 0.00 0.00 0.00 2.90
6232 6747 5.467063 TGTTTTGATTGTAGATGTGTACGCA 59.533 36.000 12.26 12.26 0.00 5.24
6233 6748 5.524511 TTTGATTGTAGATGTGTACGCAC 57.475 39.130 12.10 6.10 45.44 5.34
6236 6751 2.647529 TGTAGATGTGTACGCACTGG 57.352 50.000 12.10 0.00 45.44 4.00
6239 6754 1.795768 AGATGTGTACGCACTGGTTG 58.204 50.000 12.10 0.00 45.44 3.77
6242 6757 0.812014 TGTGTACGCACTGGTTGGTG 60.812 55.000 4.65 0.00 45.44 4.17
6248 6763 3.348236 CACTGGTTGGTGCTCTGC 58.652 61.111 0.00 0.00 0.00 4.26
6249 6764 1.228063 CACTGGTTGGTGCTCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
6250 6765 1.072159 ACTGGTTGGTGCTCTGCTC 59.928 57.895 0.00 0.00 0.00 4.26
6253 6768 1.072159 GGTTGGTGCTCTGCTCTGT 59.928 57.895 0.00 0.00 0.00 3.41
6255 6770 1.071987 TTGGTGCTCTGCTCTGTGG 59.928 57.895 0.00 0.00 0.00 4.17
6256 6771 1.699054 TTGGTGCTCTGCTCTGTGGT 61.699 55.000 0.00 0.00 0.00 4.16
6257 6772 1.670406 GGTGCTCTGCTCTGTGGTG 60.670 63.158 0.00 0.00 0.00 4.17
6260 6775 1.372683 GCTCTGCTCTGTGGTGGAA 59.627 57.895 0.00 0.00 0.00 3.53
6263 6778 0.394192 TCTGCTCTGTGGTGGAACTG 59.606 55.000 0.00 0.00 36.74 3.16
6267 6782 1.875576 GCTCTGTGGTGGAACTGACTG 60.876 57.143 0.00 0.00 36.74 3.51
6268 6783 1.688735 CTCTGTGGTGGAACTGACTGA 59.311 52.381 0.00 0.00 36.74 3.41
6269 6784 2.103094 CTCTGTGGTGGAACTGACTGAA 59.897 50.000 0.00 0.00 36.74 3.02
6270 6785 2.503765 TCTGTGGTGGAACTGACTGAAA 59.496 45.455 0.00 0.00 36.74 2.69
6271 6786 3.136443 TCTGTGGTGGAACTGACTGAAAT 59.864 43.478 0.00 0.00 36.74 2.17
6287 8221 3.415212 TGAAATCAGTTGCTGCTAGCTT 58.585 40.909 17.23 0.00 42.97 3.74
6303 8237 1.168714 GCTTAACTCTGCCAGGTTGG 58.831 55.000 8.32 0.00 41.55 3.77
6304 8238 1.826385 CTTAACTCTGCCAGGTTGGG 58.174 55.000 8.32 0.00 38.19 4.12
6306 8240 0.400213 TAACTCTGCCAGGTTGGGTG 59.600 55.000 8.32 0.00 38.19 4.61
6309 8243 2.598394 CTGCCAGGTTGGGTGTGG 60.598 66.667 0.00 0.00 38.19 4.17
6313 8247 1.533753 CCAGGTTGGGTGTGGCATT 60.534 57.895 0.00 0.00 32.67 3.56
6314 8248 1.667151 CAGGTTGGGTGTGGCATTG 59.333 57.895 0.00 0.00 0.00 2.82
6315 8249 2.209315 AGGTTGGGTGTGGCATTGC 61.209 57.895 0.00 0.00 0.00 3.56
6316 8250 2.049248 GTTGGGTGTGGCATTGCG 60.049 61.111 1.91 0.00 0.00 4.85
6317 8251 3.988525 TTGGGTGTGGCATTGCGC 61.989 61.111 0.00 0.00 41.28 6.09
6319 8253 4.424566 GGGTGTGGCATTGCGCAG 62.425 66.667 11.31 0.00 45.17 5.18
6320 8254 3.673484 GGTGTGGCATTGCGCAGT 61.673 61.111 11.31 4.28 45.17 4.40
6321 8255 2.336088 GTGTGGCATTGCGCAGTT 59.664 55.556 11.31 0.00 45.17 3.16
6323 8257 2.192187 TGTGGCATTGCGCAGTTCA 61.192 52.632 11.31 5.87 45.17 3.18
6324 8258 1.443194 GTGGCATTGCGCAGTTCAG 60.443 57.895 11.31 0.00 45.17 3.02
6325 8259 2.505557 GGCATTGCGCAGTTCAGC 60.506 61.111 11.31 7.75 45.17 4.26
6326 8260 2.256158 GCATTGCGCAGTTCAGCA 59.744 55.556 11.31 0.00 41.79 4.41
6327 8261 1.800315 GCATTGCGCAGTTCAGCAG 60.800 57.895 11.31 0.00 44.72 4.24
6328 8262 1.800315 CATTGCGCAGTTCAGCAGC 60.800 57.895 11.31 0.00 44.72 5.25
6329 8263 1.970114 ATTGCGCAGTTCAGCAGCT 60.970 52.632 11.31 0.00 44.72 4.24
6330 8264 1.919956 ATTGCGCAGTTCAGCAGCTC 61.920 55.000 11.31 0.00 44.72 4.09
6331 8265 3.046087 GCGCAGTTCAGCAGCTCA 61.046 61.111 0.30 0.00 33.47 4.26
6334 8268 1.226686 CGCAGTTCAGCAGCTCAACT 61.227 55.000 5.74 5.74 0.00 3.16
6335 8269 0.950116 GCAGTTCAGCAGCTCAACTT 59.050 50.000 9.32 0.00 0.00 2.66
6336 8270 1.334779 GCAGTTCAGCAGCTCAACTTG 60.335 52.381 9.32 6.60 0.00 3.16
6337 8271 0.950116 AGTTCAGCAGCTCAACTTGC 59.050 50.000 5.74 0.00 0.00 4.01
6340 8274 1.081376 CAGCAGCTCAACTTGCAGC 60.081 57.895 0.00 0.00 42.09 5.25
6341 8275 1.527611 AGCAGCTCAACTTGCAGCA 60.528 52.632 12.73 0.00 43.78 4.41
6342 8276 1.371389 GCAGCTCAACTTGCAGCAC 60.371 57.895 0.00 4.43 41.54 4.40
6343 8277 2.027325 CAGCTCAACTTGCAGCACA 58.973 52.632 0.00 0.00 38.18 4.57
6344 8278 0.596577 CAGCTCAACTTGCAGCACAT 59.403 50.000 0.00 0.00 38.18 3.21
6351 8285 4.325972 TCAACTTGCAGCACATCTTATGA 58.674 39.130 0.00 0.00 0.00 2.15
6356 8290 6.351711 ACTTGCAGCACATCTTATGAAGATA 58.648 36.000 0.00 0.00 46.20 1.98
6357 8291 6.482641 ACTTGCAGCACATCTTATGAAGATAG 59.517 38.462 0.00 0.24 46.20 2.08
6358 8292 4.753610 TGCAGCACATCTTATGAAGATAGC 59.246 41.667 13.68 13.68 46.20 2.97
6363 8297 5.868801 GCACATCTTATGAAGATAGCTCTCC 59.131 44.000 14.03 0.00 46.20 3.71
6365 8299 7.669427 CACATCTTATGAAGATAGCTCTCCTT 58.331 38.462 0.00 0.00 46.20 3.36
6366 8300 7.814107 CACATCTTATGAAGATAGCTCTCCTTC 59.186 40.741 12.90 12.90 46.20 3.46
6367 8301 7.508636 ACATCTTATGAAGATAGCTCTCCTTCA 59.491 37.037 20.42 20.42 46.20 3.02
6374 8308 3.077391 AGATAGCTCTCCTTCATAGGCCT 59.923 47.826 11.78 11.78 41.69 5.19
6375 8309 1.422531 AGCTCTCCTTCATAGGCCTG 58.577 55.000 17.99 0.00 41.69 4.85
6376 8310 1.127343 GCTCTCCTTCATAGGCCTGT 58.873 55.000 17.99 5.57 41.69 4.00
6377 8311 2.091055 AGCTCTCCTTCATAGGCCTGTA 60.091 50.000 17.99 0.00 41.69 2.74
6379 8313 3.571590 CTCTCCTTCATAGGCCTGTACT 58.428 50.000 17.99 0.00 41.69 2.73
6381 8315 3.706594 TCTCCTTCATAGGCCTGTACTTG 59.293 47.826 17.99 5.34 41.69 3.16
6382 8316 3.706594 CTCCTTCATAGGCCTGTACTTGA 59.293 47.826 17.99 7.76 41.69 3.02
6386 8320 5.540337 CCTTCATAGGCCTGTACTTGAGATA 59.460 44.000 17.99 0.00 33.99 1.98
6388 8322 4.519350 TCATAGGCCTGTACTTGAGATACG 59.481 45.833 17.99 0.00 0.00 3.06
6389 8323 2.032620 AGGCCTGTACTTGAGATACGG 58.967 52.381 3.11 0.00 0.00 4.02
6393 8327 3.368116 GCCTGTACTTGAGATACGGTGTT 60.368 47.826 0.00 0.00 0.00 3.32
6395 8329 3.581755 TGTACTTGAGATACGGTGTTGC 58.418 45.455 0.00 0.00 0.00 4.17
6397 8331 2.960819 ACTTGAGATACGGTGTTGCTC 58.039 47.619 0.00 0.00 0.00 4.26
6398 8332 1.920574 CTTGAGATACGGTGTTGCTCG 59.079 52.381 0.00 0.00 0.00 5.03
6399 8333 0.457853 TGAGATACGGTGTTGCTCGC 60.458 55.000 0.00 0.00 0.00 5.03
6401 8335 1.153628 GATACGGTGTTGCTCGCCT 60.154 57.895 9.56 1.82 43.94 5.52
6402 8336 0.739813 GATACGGTGTTGCTCGCCTT 60.740 55.000 9.56 4.11 43.94 4.35
6403 8337 0.321298 ATACGGTGTTGCTCGCCTTT 60.321 50.000 9.56 1.31 43.94 3.11
6404 8338 0.533308 TACGGTGTTGCTCGCCTTTT 60.533 50.000 9.56 0.00 43.94 2.27
6405 8339 1.370414 CGGTGTTGCTCGCCTTTTG 60.370 57.895 9.56 0.00 43.94 2.44
6406 8340 1.733526 GGTGTTGCTCGCCTTTTGT 59.266 52.632 5.13 0.00 42.91 2.83
6407 8341 0.948678 GGTGTTGCTCGCCTTTTGTA 59.051 50.000 5.13 0.00 42.91 2.41
6409 8343 2.414161 GGTGTTGCTCGCCTTTTGTATC 60.414 50.000 5.13 0.00 42.91 2.24
6415 8349 3.003480 GCTCGCCTTTTGTATCTCTGTT 58.997 45.455 0.00 0.00 0.00 3.16
6416 8350 3.062774 GCTCGCCTTTTGTATCTCTGTTC 59.937 47.826 0.00 0.00 0.00 3.18
6417 8351 4.245660 CTCGCCTTTTGTATCTCTGTTCA 58.754 43.478 0.00 0.00 0.00 3.18
6424 9288 7.373493 CCTTTTGTATCTCTGTTCATTTGCTT 58.627 34.615 0.00 0.00 0.00 3.91
6425 9289 7.540055 CCTTTTGTATCTCTGTTCATTTGCTTC 59.460 37.037 0.00 0.00 0.00 3.86
6436 9300 2.089980 CATTTGCTTCAGGACCTCCAG 58.910 52.381 0.00 0.00 38.89 3.86
6460 9325 0.036765 TGTCCGTTCAAATCGGGAGG 60.037 55.000 4.58 0.00 46.82 4.30
6484 9349 1.427592 GATCCAAGAGAGCAGCACGC 61.428 60.000 0.00 0.00 42.91 5.34
6487 9352 1.216444 CAAGAGAGCAGCACGCCTA 59.784 57.895 0.00 0.00 44.04 3.93
6507 9372 5.743872 GCCTAGTGTGAACAAAACTGAAAAG 59.256 40.000 0.00 0.00 0.00 2.27
6512 9377 8.831715 AGTGTGAACAAAACTGAAAAGAAAAT 57.168 26.923 0.00 0.00 0.00 1.82
6513 9378 9.271828 AGTGTGAACAAAACTGAAAAGAAAATT 57.728 25.926 0.00 0.00 0.00 1.82
6546 9411 4.742438 TCTGGACGCAAATAAAAGTGAC 57.258 40.909 0.00 0.00 0.00 3.67
6552 9417 2.094752 CGCAAATAAAAGTGACCCCCTG 60.095 50.000 0.00 0.00 0.00 4.45
6608 9473 7.065204 TGCCCAAAGTCAAATTTTGTAAACTTC 59.935 33.333 12.46 4.53 34.51 3.01
6628 9493 6.698380 ACTTCGACCAAGCTTATAGAAAAGA 58.302 36.000 0.00 0.00 35.17 2.52
6681 9546 5.584551 AGGAGGGAGTACATCTTGTTTTT 57.415 39.130 0.00 0.00 0.00 1.94
6689 9554 7.148623 GGGAGTACATCTTGTTTTTAAGAGTCG 60.149 40.741 0.00 0.00 39.81 4.18
6712 9577 6.019075 TCGTTTCATGATCTTAATTAGCCACG 60.019 38.462 0.00 0.00 0.00 4.94
6720 9585 6.701841 TGATCTTAATTAGCCACGTGAATCTC 59.298 38.462 19.30 0.34 0.00 2.75
6738 9603 6.147164 TGAATCTCGACTTTTCATTACACACC 59.853 38.462 0.00 0.00 0.00 4.16
6772 9638 2.632987 AGTACAGCGGAAAAACCAGT 57.367 45.000 0.00 0.00 38.90 4.00
6777 9643 1.193874 CAGCGGAAAAACCAGTACGAC 59.806 52.381 0.00 0.00 38.90 4.34
6797 9663 2.826128 ACAAGTATCTCGAGGAGTTGCA 59.174 45.455 24.23 3.54 0.00 4.08
6802 9668 2.613026 TCTCGAGGAGTTGCACAAAA 57.387 45.000 13.56 0.00 0.00 2.44
6805 9671 2.807967 CTCGAGGAGTTGCACAAAATGA 59.192 45.455 3.91 0.00 0.00 2.57
6812 9678 3.989817 GAGTTGCACAAAATGATCAACCC 59.010 43.478 0.00 2.62 35.49 4.11
6821 9687 5.821995 ACAAAATGATCAACCCAAAACCTTG 59.178 36.000 0.00 0.00 0.00 3.61
6824 9690 3.636679 TGATCAACCCAAAACCTTGTGA 58.363 40.909 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.131883 CAAAGCGAAAGAGGGCATCTG 59.868 52.381 0.87 0.00 38.67 2.90
25 26 1.199789 CATAGGCACAGCAAAGCGAAA 59.800 47.619 0.00 0.00 0.00 3.46
43 44 1.003580 CCCCTACTTCACAGTGCACAT 59.996 52.381 21.04 3.29 34.06 3.21
49 50 1.834263 GAGATGCCCCTACTTCACAGT 59.166 52.381 0.00 0.00 36.99 3.55
63 64 2.028130 CCCGCTTTCCATGAGATGC 58.972 57.895 0.00 0.00 0.00 3.91
70 71 0.820891 CAGCATAGCCCGCTTTCCAT 60.821 55.000 0.00 0.00 37.72 3.41
79 80 2.880890 CAAATACACTCCAGCATAGCCC 59.119 50.000 0.00 0.00 0.00 5.19
95 96 6.092944 CAGAACGTAACCATACAAGGCAAATA 59.907 38.462 0.00 0.00 32.02 1.40
96 97 5.007682 AGAACGTAACCATACAAGGCAAAT 58.992 37.500 0.00 0.00 32.02 2.32
105 106 5.467705 ACTCAGTTCAGAACGTAACCATAC 58.532 41.667 7.68 0.00 36.23 2.39
115 116 3.938963 TGGTTGTCAACTCAGTTCAGAAC 59.061 43.478 15.17 5.00 0.00 3.01
131 132 0.606401 CGGGAACATGAGCTGGTTGT 60.606 55.000 0.00 0.00 0.00 3.32
247 523 1.143305 CGAATGCGGGCATCTAGAAG 58.857 55.000 6.61 0.00 35.31 2.85
289 565 2.388735 ACTTCACAGTGGACAGAGTCA 58.611 47.619 0.00 0.00 33.68 3.41
412 692 2.798009 CCACTAAATTGCGCGGGG 59.202 61.111 8.83 0.00 0.00 5.73
438 718 4.698780 ACGACAAAAATTAAGTAGGGAGGC 59.301 41.667 0.00 0.00 0.00 4.70
469 750 7.875554 TGAAACATGCAACTGAATGTACTAGTA 59.124 33.333 3.69 0.00 43.33 1.82
473 754 5.563475 GCTGAAACATGCAACTGAATGTACT 60.563 40.000 3.69 0.00 43.33 2.73
474 755 4.618489 GCTGAAACATGCAACTGAATGTAC 59.382 41.667 3.69 3.11 43.33 2.90
475 756 4.277921 TGCTGAAACATGCAACTGAATGTA 59.722 37.500 3.69 0.00 43.33 2.29
481 762 2.787601 AGTGCTGAAACATGCAACTG 57.212 45.000 0.00 0.00 41.10 3.16
486 767 5.352569 AGACAATAGTAGTGCTGAAACATGC 59.647 40.000 0.00 0.00 0.00 4.06
489 770 5.011635 TCCAGACAATAGTAGTGCTGAAACA 59.988 40.000 17.70 3.18 0.00 2.83
600 893 1.224069 CGGTTCAGTGCAGTGACCTG 61.224 60.000 23.80 18.06 41.91 4.00
622 915 5.362556 ACACAACGAAGAAATCTGGAATG 57.637 39.130 0.00 0.00 0.00 2.67
631 924 3.242608 GCAAGCAGTACACAACGAAGAAA 60.243 43.478 0.00 0.00 0.00 2.52
792 1170 7.832769 AGGTTAAAACAAGAAACACAAGCTAA 58.167 30.769 0.00 0.00 0.00 3.09
860 1238 8.689972 CATTAGAGCTTCCCATAGAAACAAAAT 58.310 33.333 0.00 0.00 32.88 1.82
896 1274 0.251354 ATGCAGTAGCTGAGTGTGGG 59.749 55.000 0.00 0.00 42.74 4.61
982 1363 6.830324 TCTTCCATCAACCCTATGAAAAGATG 59.170 38.462 0.00 0.00 32.06 2.90
992 1373 5.339200 GGTGAGAAATCTTCCATCAACCCTA 60.339 44.000 0.00 0.00 0.00 3.53
1110 1491 4.735338 ACGATGCTTGATATATCGCATACG 59.265 41.667 21.11 23.19 45.43 3.06
1370 1751 0.981183 TTGCAAGGTGGATAGACCGT 59.019 50.000 0.00 0.00 41.35 4.83
1533 1915 1.490490 TGGAACCTGAGGGACATATGC 59.510 52.381 2.38 0.00 36.25 3.14
1557 1939 9.079833 CCATCAGATTTTGCACTACATTTTAAG 57.920 33.333 0.00 0.00 0.00 1.85
1622 2004 9.897744 CTTATATGCAGTTTCAACAGAGAAAAA 57.102 29.630 0.00 0.00 39.05 1.94
1662 2044 0.179000 GGAGTACATCACTGCTGGGG 59.821 60.000 0.00 0.00 42.10 4.96
1683 2065 6.617879 ACAAAGACTTATATTTTGGAACGGC 58.382 36.000 2.75 0.00 36.41 5.68
1697 2079 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
1788 2170 7.825331 ATCTTCGTAGAGATTCACTATGGAA 57.175 36.000 9.56 8.19 38.43 3.53
1789 2171 7.825331 AATCTTCGTAGAGATTCACTATGGA 57.175 36.000 9.56 1.93 38.43 3.41
1795 2177 9.615295 GGAGTATAAATCTTCGTAGAGATTCAC 57.385 37.037 10.32 9.24 38.43 3.18
1796 2178 8.794553 GGGAGTATAAATCTTCGTAGAGATTCA 58.205 37.037 10.32 0.12 38.43 2.57
1797 2179 9.016438 AGGGAGTATAAATCTTCGTAGAGATTC 57.984 37.037 10.32 1.88 38.43 2.52
1798 2180 8.943594 AGGGAGTATAAATCTTCGTAGAGATT 57.056 34.615 0.00 2.30 38.43 2.40
1799 2181 7.612633 GGAGGGAGTATAAATCTTCGTAGAGAT 59.387 40.741 0.00 0.00 38.43 2.75
1800 2182 6.941436 GGAGGGAGTATAAATCTTCGTAGAGA 59.059 42.308 0.00 0.00 38.43 3.10
1801 2183 6.128227 CGGAGGGAGTATAAATCTTCGTAGAG 60.128 46.154 0.00 0.00 38.43 2.43
1802 2184 5.704515 CGGAGGGAGTATAAATCTTCGTAGA 59.295 44.000 0.00 0.00 34.21 2.59
1803 2185 5.472820 ACGGAGGGAGTATAAATCTTCGTAG 59.527 44.000 0.00 0.00 0.00 3.51
1804 2186 5.380043 ACGGAGGGAGTATAAATCTTCGTA 58.620 41.667 0.00 0.00 0.00 3.43
1805 2187 4.213513 ACGGAGGGAGTATAAATCTTCGT 58.786 43.478 0.00 0.00 0.00 3.85
1806 2188 4.850347 ACGGAGGGAGTATAAATCTTCG 57.150 45.455 0.00 0.00 0.00 3.79
1807 2189 5.304871 AGGAACGGAGGGAGTATAAATCTTC 59.695 44.000 0.00 0.00 0.00 2.87
1808 2190 5.217400 AGGAACGGAGGGAGTATAAATCTT 58.783 41.667 0.00 0.00 0.00 2.40
1809 2191 4.817286 AGGAACGGAGGGAGTATAAATCT 58.183 43.478 0.00 0.00 0.00 2.40
1810 2192 6.661304 TTAGGAACGGAGGGAGTATAAATC 57.339 41.667 0.00 0.00 0.00 2.17
1811 2193 7.628501 ATTTAGGAACGGAGGGAGTATAAAT 57.371 36.000 0.00 0.00 0.00 1.40
1812 2194 8.731591 ATATTTAGGAACGGAGGGAGTATAAA 57.268 34.615 0.00 0.00 0.00 1.40
1813 2195 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
1814 2196 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
1815 2197 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
1816 2198 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1817 2199 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1818 2200 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1819 2201 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1820 2202 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1821 2203 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1871 2253 9.417561 AGTGTAGATTCATTCATTTTGATCCAT 57.582 29.630 0.00 0.00 0.00 3.41
1872 2254 8.812513 AGTGTAGATTCATTCATTTTGATCCA 57.187 30.769 0.00 0.00 0.00 3.41
1873 2255 9.118300 AGAGTGTAGATTCATTCATTTTGATCC 57.882 33.333 0.00 0.00 0.00 3.36
1904 2286 9.521503 GACTACATACGGATGTATATAGACGTA 57.478 37.037 20.64 9.65 45.42 3.57
1905 2287 7.493971 GGACTACATACGGATGTATATAGACGT 59.506 40.741 20.64 12.85 45.42 4.34
1906 2288 7.493645 TGGACTACATACGGATGTATATAGACG 59.506 40.741 20.64 9.79 45.42 4.18
1907 2289 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
1912 2294 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
1913 2295 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
1914 2296 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
1916 2298 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
1917 2299 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
1918 2300 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
1919 2301 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
1947 2329 9.562408 CCCTCCTTTCCTAAATATAAGTCTTTC 57.438 37.037 0.00 0.00 0.00 2.62
1963 2345 5.682659 GTTCCTAAATACTCCCTCCTTTCC 58.317 45.833 0.00 0.00 0.00 3.13
1964 2346 5.358090 CGTTCCTAAATACTCCCTCCTTTC 58.642 45.833 0.00 0.00 0.00 2.62
1965 2347 4.163649 CCGTTCCTAAATACTCCCTCCTTT 59.836 45.833 0.00 0.00 0.00 3.11
1966 2348 3.710165 CCGTTCCTAAATACTCCCTCCTT 59.290 47.826 0.00 0.00 0.00 3.36
1967 2349 3.052338 TCCGTTCCTAAATACTCCCTCCT 60.052 47.826 0.00 0.00 0.00 3.69
1968 2350 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
1969 2351 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
1970 2352 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
1971 2353 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
1972 2354 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
1973 2355 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
1974 2356 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1975 2357 4.261952 GCTACTCCCTCCGTTCCTAAATAC 60.262 50.000 0.00 0.00 0.00 1.89
1976 2358 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
1977 2359 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
1978 2360 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
1979 2361 1.006281 TGCTACTCCCTCCGTTCCTAA 59.994 52.381 0.00 0.00 0.00 2.69
1980 2362 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
1981 2363 0.252103 TTGCTACTCCCTCCGTTCCT 60.252 55.000 0.00 0.00 0.00 3.36
2318 2734 1.906253 CCACTGCAGAGCCAGATCT 59.094 57.895 23.35 0.00 36.67 2.75
2322 2739 2.746671 CAGCCACTGCAGAGCCAG 60.747 66.667 23.35 13.83 41.13 4.85
2327 2744 2.848679 TCACCCAGCCACTGCAGA 60.849 61.111 23.35 0.00 41.13 4.26
2405 2824 7.931407 CACCCTTCACTAATGTAAGTGCATATA 59.069 37.037 0.00 0.00 45.34 0.86
2406 2825 6.767902 CACCCTTCACTAATGTAAGTGCATAT 59.232 38.462 0.00 0.00 45.34 1.78
2423 2842 3.655615 ACTAACCAAACACACCCTTCA 57.344 42.857 0.00 0.00 0.00 3.02
2424 2843 4.643334 AGAAACTAACCAAACACACCCTTC 59.357 41.667 0.00 0.00 0.00 3.46
2484 2903 1.350351 GATATGGACCAGAGCCTGCAT 59.650 52.381 0.00 0.00 0.00 3.96
2486 2905 1.055040 AGATATGGACCAGAGCCTGC 58.945 55.000 0.00 0.00 0.00 4.85
2497 2916 4.343231 ACCAAACAACATGCAGATATGGA 58.657 39.130 10.03 0.00 32.32 3.41
2554 2974 3.056891 GCTGGGCTTAGTGCAATTTACAA 60.057 43.478 0.00 0.00 45.15 2.41
2639 3059 4.344865 AAACTGGCCCGCACGGAT 62.345 61.111 11.42 0.00 37.50 4.18
2647 3067 4.043200 GCACGCAGAAACTGGCCC 62.043 66.667 0.00 0.00 31.21 5.80
2662 3082 4.577677 TTGGTTGCCTGGCTCGCA 62.578 61.111 21.03 10.03 0.00 5.10
2837 3261 0.827507 GCCCCAGCAACCTTTGAAGA 60.828 55.000 0.00 0.00 39.53 2.87
3041 3466 1.760613 TCCAAGTACCTCCATAAGCGG 59.239 52.381 0.00 0.00 0.00 5.52
3042 3467 2.798499 CGTCCAAGTACCTCCATAAGCG 60.798 54.545 0.00 0.00 0.00 4.68
3096 3521 0.248289 AATGGGACGAGGTAACACCG 59.752 55.000 0.00 0.00 44.90 4.94
3211 3638 9.431887 CAGTACCAAACAGAACTAGCTTAAATA 57.568 33.333 0.00 0.00 0.00 1.40
3256 3706 8.204836 ACCTGTGTTACCTAAAGAGCTATATTG 58.795 37.037 0.00 0.00 0.00 1.90
3353 3804 8.738645 TTTGCCAAACCTGTTTAATGTAAAAT 57.261 26.923 0.00 0.00 0.00 1.82
3354 3805 8.738645 ATTTGCCAAACCTGTTTAATGTAAAA 57.261 26.923 0.00 0.00 0.00 1.52
3632 4083 6.019318 GCCAAATCAAACATGTGCTCATAATC 60.019 38.462 0.00 0.00 32.47 1.75
3805 4256 3.669122 CGAGTTCTTTACGGTTCTCACTG 59.331 47.826 0.00 0.00 35.09 3.66
3859 4310 1.273606 AGAAGGCGCTCGTGCATATAT 59.726 47.619 7.64 0.00 39.64 0.86
4405 4883 0.040958 GCCTTGAAATATCTGGCGCG 60.041 55.000 0.00 0.00 36.63 6.86
4408 4886 5.876612 CAGATAGCCTTGAAATATCTGGC 57.123 43.478 11.77 0.00 44.68 4.85
4430 4908 1.867233 TCTTGCTTCAGAACTCGCAAC 59.133 47.619 4.57 0.00 37.45 4.17
4457 4935 3.062042 CAGCATGCCTTTCTTCAAAACC 58.938 45.455 15.66 0.00 0.00 3.27
4462 4940 1.888512 GAACCAGCATGCCTTTCTTCA 59.111 47.619 15.66 0.00 31.97 3.02
4471 4949 1.818060 TGTACATTGGAACCAGCATGC 59.182 47.619 10.51 10.51 31.97 4.06
4517 4995 5.916883 CGTTCAAAAGAGATGCTTCAAATGT 59.083 36.000 2.07 0.00 35.24 2.71
4523 5001 3.498397 TCACCGTTCAAAAGAGATGCTTC 59.502 43.478 0.00 0.00 35.24 3.86
4933 5411 1.000717 GCTAGAAGGCGGATCTCTGAC 60.001 57.143 0.00 0.00 0.00 3.51
5053 5532 3.655810 GAGGAGGGCTGTCACTGCG 62.656 68.421 0.00 0.00 0.00 5.18
5281 5760 0.175760 CATCTTTCTTCCCTCGCGGA 59.824 55.000 6.13 0.00 39.68 5.54
5311 5790 5.789521 TGGAGTATCGACAGATTGAACAAA 58.210 37.500 0.00 0.00 38.26 2.83
5689 6172 8.792633 TCCTTCCAGTTGTAGATAAATTTTGTG 58.207 33.333 0.00 0.00 0.00 3.33
5873 6364 7.826744 AGTCAACAACAAATTTAACCACCATTT 59.173 29.630 0.00 0.00 0.00 2.32
5879 6370 5.105146 AGCCAGTCAACAACAAATTTAACCA 60.105 36.000 0.00 0.00 0.00 3.67
5888 6379 1.102154 CACCAGCCAGTCAACAACAA 58.898 50.000 0.00 0.00 0.00 2.83
5889 6380 1.383456 GCACCAGCCAGTCAACAACA 61.383 55.000 0.00 0.00 33.58 3.33
5890 6381 1.103398 AGCACCAGCCAGTCAACAAC 61.103 55.000 0.00 0.00 43.56 3.32
5988 6486 0.034863 ACGACAACAACCAACACCCT 60.035 50.000 0.00 0.00 0.00 4.34
5996 6494 3.414549 ACAACAATGACGACAACAACC 57.585 42.857 0.00 0.00 0.00 3.77
5997 6495 4.407818 TCAACAACAATGACGACAACAAC 58.592 39.130 0.00 0.00 0.00 3.32
5998 6496 4.393371 TCTCAACAACAATGACGACAACAA 59.607 37.500 0.00 0.00 0.00 2.83
6035 6536 1.214367 ACGACAAGCTGTACAAACCG 58.786 50.000 0.00 0.00 0.00 4.44
6106 6620 4.224433 CACTTGCAACAATCAGCTAACAG 58.776 43.478 0.00 0.00 0.00 3.16
6107 6621 3.004629 CCACTTGCAACAATCAGCTAACA 59.995 43.478 0.00 0.00 0.00 2.41
6108 6622 3.253188 TCCACTTGCAACAATCAGCTAAC 59.747 43.478 0.00 0.00 0.00 2.34
6138 6653 2.713011 GCGCAACAAATAGATCAGCAG 58.287 47.619 0.30 0.00 0.00 4.24
6151 6666 1.001240 GCAAAAGTATGCGCGCAACA 61.001 50.000 39.68 25.94 36.45 3.33
6152 6667 1.696083 GCAAAAGTATGCGCGCAAC 59.304 52.632 39.68 32.22 36.45 4.17
6157 6672 8.575964 TCGAAAGATAAGGCAAAAGTATGCGC 62.576 42.308 0.00 0.00 40.70 6.09
6163 6678 5.794894 TCTCTCGAAAGATAAGGCAAAAGT 58.205 37.500 0.00 0.00 40.84 2.66
6164 6679 6.917217 ATCTCTCGAAAGATAAGGCAAAAG 57.083 37.500 0.00 0.00 40.84 2.27
6172 6687 8.910351 TCACAGATCTATCTCTCGAAAGATAA 57.090 34.615 9.65 2.40 37.70 1.75
6173 6688 9.513906 AATCACAGATCTATCTCTCGAAAGATA 57.486 33.333 8.17 8.17 37.24 1.98
6187 6702 4.162888 ACATCAGGCACAATCACAGATCTA 59.837 41.667 0.00 0.00 0.00 1.98
6198 6713 4.669206 ACAATCAAAACATCAGGCACAA 57.331 36.364 0.00 0.00 0.00 3.33
6232 6747 1.072159 GAGCAGAGCACCAACCAGT 59.928 57.895 0.00 0.00 0.00 4.00
6233 6748 0.954449 CAGAGCAGAGCACCAACCAG 60.954 60.000 0.00 0.00 0.00 4.00
6236 6751 1.233285 CCACAGAGCAGAGCACCAAC 61.233 60.000 0.00 0.00 0.00 3.77
6239 6754 1.670406 CACCACAGAGCAGAGCACC 60.670 63.158 0.00 0.00 0.00 5.01
6242 6757 0.952984 GTTCCACCACAGAGCAGAGC 60.953 60.000 0.00 0.00 0.00 4.09
6243 6758 0.683973 AGTTCCACCACAGAGCAGAG 59.316 55.000 0.00 0.00 0.00 3.35
6245 6760 0.394192 TCAGTTCCACCACAGAGCAG 59.606 55.000 0.00 0.00 0.00 4.24
6248 6763 1.688735 TCAGTCAGTTCCACCACAGAG 59.311 52.381 0.00 0.00 0.00 3.35
6249 6764 1.788229 TCAGTCAGTTCCACCACAGA 58.212 50.000 0.00 0.00 0.00 3.41
6250 6765 2.620251 TTCAGTCAGTTCCACCACAG 57.380 50.000 0.00 0.00 0.00 3.66
6253 6768 3.743521 CTGATTTCAGTCAGTTCCACCA 58.256 45.455 0.00 0.00 40.54 4.17
6267 6782 5.123027 AGTTAAGCTAGCAGCAACTGATTTC 59.877 40.000 18.83 0.00 45.56 2.17
6268 6783 5.006386 AGTTAAGCTAGCAGCAACTGATTT 58.994 37.500 18.83 0.40 45.56 2.17
6269 6784 4.583871 AGTTAAGCTAGCAGCAACTGATT 58.416 39.130 18.83 1.18 45.56 2.57
6270 6785 4.081198 AGAGTTAAGCTAGCAGCAACTGAT 60.081 41.667 24.58 14.57 45.56 2.90
6271 6786 3.259374 AGAGTTAAGCTAGCAGCAACTGA 59.741 43.478 24.58 0.00 45.56 3.41
6274 6789 2.095053 GCAGAGTTAAGCTAGCAGCAAC 59.905 50.000 18.83 16.31 45.56 4.17
6276 6791 1.406069 GGCAGAGTTAAGCTAGCAGCA 60.406 52.381 18.83 0.00 45.56 4.41
6277 6792 1.294857 GGCAGAGTTAAGCTAGCAGC 58.705 55.000 18.83 7.13 42.84 5.25
6278 6793 2.548875 CTGGCAGAGTTAAGCTAGCAG 58.451 52.381 18.83 0.00 32.63 4.24
6280 6795 1.208293 ACCTGGCAGAGTTAAGCTAGC 59.792 52.381 17.94 6.62 37.94 3.42
6283 8217 1.271597 CCAACCTGGCAGAGTTAAGCT 60.272 52.381 17.94 0.00 0.00 3.74
6287 8221 0.400213 CACCCAACCTGGCAGAGTTA 59.600 55.000 17.94 0.00 35.79 2.24
6303 8237 3.211564 AACTGCGCAATGCCACACC 62.212 57.895 13.05 0.00 45.60 4.16
6304 8238 1.730547 GAACTGCGCAATGCCACAC 60.731 57.895 13.05 0.00 45.60 3.82
6306 8240 1.443194 CTGAACTGCGCAATGCCAC 60.443 57.895 13.05 0.57 45.60 5.01
6309 8243 1.800315 CTGCTGAACTGCGCAATGC 60.800 57.895 13.05 11.82 46.70 3.56
6310 8244 1.800315 GCTGCTGAACTGCGCAATG 60.800 57.895 13.05 2.61 35.46 2.82
6316 8250 0.950116 AAGTTGAGCTGCTGAACTGC 59.050 50.000 30.14 7.47 36.96 4.40
6317 8251 1.334779 GCAAGTTGAGCTGCTGAACTG 60.335 52.381 30.14 23.72 36.96 3.16
6318 8252 0.950116 GCAAGTTGAGCTGCTGAACT 59.050 50.000 25.49 25.49 39.41 3.01
6319 8253 0.664761 TGCAAGTTGAGCTGCTGAAC 59.335 50.000 21.91 21.91 0.00 3.18
6320 8254 0.949397 CTGCAAGTTGAGCTGCTGAA 59.051 50.000 7.01 0.63 0.00 3.02
6321 8255 2.625375 CTGCAAGTTGAGCTGCTGA 58.375 52.632 7.01 0.00 0.00 4.26
6325 8259 0.596577 ATGTGCTGCAAGTTGAGCTG 59.403 50.000 20.56 7.86 36.11 4.24
6326 8260 0.879765 GATGTGCTGCAAGTTGAGCT 59.120 50.000 20.56 0.00 36.11 4.09
6327 8261 0.879765 AGATGTGCTGCAAGTTGAGC 59.120 50.000 7.16 12.85 35.30 4.26
6328 8262 4.393990 TCATAAGATGTGCTGCAAGTTGAG 59.606 41.667 7.16 2.63 35.30 3.02
6329 8263 4.325972 TCATAAGATGTGCTGCAAGTTGA 58.674 39.130 7.16 0.00 35.30 3.18
6330 8264 4.690184 TCATAAGATGTGCTGCAAGTTG 57.310 40.909 2.77 0.00 35.30 3.16
6331 8265 5.005740 TCTTCATAAGATGTGCTGCAAGTT 58.994 37.500 2.77 0.00 30.92 2.66
6334 8268 6.910796 AGCTATCTTCATAAGATGTGCTGCAA 60.911 38.462 20.70 0.00 46.83 4.08
6335 8269 5.454329 AGCTATCTTCATAAGATGTGCTGCA 60.454 40.000 20.70 0.00 46.83 4.41
6336 8270 4.996122 AGCTATCTTCATAAGATGTGCTGC 59.004 41.667 20.70 13.30 46.83 5.25
6363 8297 5.543507 ATCTCAAGTACAGGCCTATGAAG 57.456 43.478 3.98 0.00 0.00 3.02
6365 8299 4.519350 CGTATCTCAAGTACAGGCCTATGA 59.481 45.833 3.98 4.56 0.00 2.15
6366 8300 4.321304 CCGTATCTCAAGTACAGGCCTATG 60.321 50.000 3.98 0.00 0.00 2.23
6367 8301 3.827302 CCGTATCTCAAGTACAGGCCTAT 59.173 47.826 3.98 0.00 0.00 2.57
6371 8305 2.165845 ACACCGTATCTCAAGTACAGGC 59.834 50.000 0.00 0.00 0.00 4.85
6374 8308 3.257375 AGCAACACCGTATCTCAAGTACA 59.743 43.478 0.00 0.00 0.00 2.90
6375 8309 3.846360 AGCAACACCGTATCTCAAGTAC 58.154 45.455 0.00 0.00 0.00 2.73
6376 8310 3.427098 CGAGCAACACCGTATCTCAAGTA 60.427 47.826 0.00 0.00 0.00 2.24
6377 8311 2.671351 CGAGCAACACCGTATCTCAAGT 60.671 50.000 0.00 0.00 0.00 3.16
6379 8313 1.990799 CGAGCAACACCGTATCTCAA 58.009 50.000 0.00 0.00 0.00 3.02
6381 8315 1.146358 GGCGAGCAACACCGTATCTC 61.146 60.000 0.00 0.00 0.00 2.75
6382 8316 1.153628 GGCGAGCAACACCGTATCT 60.154 57.895 0.00 0.00 0.00 1.98
6386 8320 1.822186 AAAAGGCGAGCAACACCGT 60.822 52.632 0.00 0.00 0.00 4.83
6388 8322 0.948678 TACAAAAGGCGAGCAACACC 59.051 50.000 0.00 0.00 0.00 4.16
6389 8323 2.484264 AGATACAAAAGGCGAGCAACAC 59.516 45.455 0.00 0.00 0.00 3.32
6393 8327 2.028112 ACAGAGATACAAAAGGCGAGCA 60.028 45.455 0.00 0.00 0.00 4.26
6395 8329 4.245660 TGAACAGAGATACAAAAGGCGAG 58.754 43.478 0.00 0.00 0.00 5.03
6397 8331 5.551760 AATGAACAGAGATACAAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
6398 8332 5.574443 GCAAATGAACAGAGATACAAAAGGC 59.426 40.000 0.00 0.00 0.00 4.35
6399 8333 6.917533 AGCAAATGAACAGAGATACAAAAGG 58.082 36.000 0.00 0.00 0.00 3.11
6401 8335 7.939782 TGAAGCAAATGAACAGAGATACAAAA 58.060 30.769 0.00 0.00 0.00 2.44
6402 8336 7.308770 CCTGAAGCAAATGAACAGAGATACAAA 60.309 37.037 0.00 0.00 0.00 2.83
6403 8337 6.149973 CCTGAAGCAAATGAACAGAGATACAA 59.850 38.462 0.00 0.00 0.00 2.41
6404 8338 5.645067 CCTGAAGCAAATGAACAGAGATACA 59.355 40.000 0.00 0.00 0.00 2.29
6405 8339 5.877012 TCCTGAAGCAAATGAACAGAGATAC 59.123 40.000 0.00 0.00 0.00 2.24
6406 8340 5.877012 GTCCTGAAGCAAATGAACAGAGATA 59.123 40.000 0.00 0.00 0.00 1.98
6407 8341 4.699257 GTCCTGAAGCAAATGAACAGAGAT 59.301 41.667 0.00 0.00 0.00 2.75
6409 8343 3.190118 GGTCCTGAAGCAAATGAACAGAG 59.810 47.826 0.00 0.00 0.00 3.35
6415 8349 1.704628 TGGAGGTCCTGAAGCAAATGA 59.295 47.619 0.00 0.00 36.82 2.57
6416 8350 2.089980 CTGGAGGTCCTGAAGCAAATG 58.910 52.381 0.00 0.00 37.15 2.32
6417 8351 1.615384 GCTGGAGGTCCTGAAGCAAAT 60.615 52.381 14.87 0.00 37.15 2.32
6424 9288 1.072331 GACAAAAGCTGGAGGTCCTGA 59.928 52.381 0.00 0.00 37.15 3.86
6425 9289 1.528129 GACAAAAGCTGGAGGTCCTG 58.472 55.000 0.00 0.00 37.93 3.86
6456 9321 1.688197 CTCTCTTGGATCAGAGCCTCC 59.312 57.143 6.21 0.00 40.33 4.30
6484 9349 7.083875 TCTTTTCAGTTTTGTTCACACTAGG 57.916 36.000 0.00 0.00 0.00 3.02
6487 9352 8.831715 ATTTTCTTTTCAGTTTTGTTCACACT 57.168 26.923 0.00 0.00 0.00 3.55
6507 9372 8.958043 GCGTCCAGATTATGTTTATCAATTTTC 58.042 33.333 0.00 0.00 0.00 2.29
6512 9377 6.993786 TTGCGTCCAGATTATGTTTATCAA 57.006 33.333 0.00 0.00 0.00 2.57
6513 9378 6.993786 TTTGCGTCCAGATTATGTTTATCA 57.006 33.333 0.00 0.00 0.00 2.15
6526 9391 3.365969 GGGTCACTTTTATTTGCGTCCAG 60.366 47.826 0.00 0.00 0.00 3.86
6546 9411 1.485895 CATAATTTGGCAACCAGGGGG 59.514 52.381 0.00 0.00 41.29 5.40
6584 9449 7.489757 TCGAAGTTTACAAAATTTGACTTTGGG 59.510 33.333 13.19 6.08 37.96 4.12
6596 9461 5.570234 AAGCTTGGTCGAAGTTTACAAAA 57.430 34.783 0.00 0.00 33.65 2.44
6608 9473 9.261180 TGATAATCTTTTCTATAAGCTTGGTCG 57.739 33.333 9.86 0.00 0.00 4.79
6689 9554 6.907212 CACGTGGCTAATTAAGATCATGAAAC 59.093 38.462 7.95 0.00 0.00 2.78
6712 9577 7.010023 GTGTGTAATGAAAAGTCGAGATTCAC 58.990 38.462 9.00 1.69 36.03 3.18
6720 9585 5.408299 TCATCAGGTGTGTAATGAAAAGTCG 59.592 40.000 0.00 0.00 0.00 4.18
6751 9616 4.075963 ACTGGTTTTTCCGCTGTACTTA 57.924 40.909 0.00 0.00 39.52 2.24
6754 9619 2.156310 CGTACTGGTTTTTCCGCTGTAC 59.844 50.000 0.00 0.00 39.52 2.90
6769 9635 3.869832 TCCTCGAGATACTTGTCGTACTG 59.130 47.826 15.71 0.00 39.49 2.74
6772 9638 4.134379 ACTCCTCGAGATACTTGTCGTA 57.866 45.455 15.71 0.00 39.49 3.43
6777 9643 3.182967 GTGCAACTCCTCGAGATACTTG 58.817 50.000 15.71 10.38 33.32 3.16
6797 9663 5.628797 AGGTTTTGGGTTGATCATTTTGT 57.371 34.783 0.00 0.00 0.00 2.83
6802 9668 4.222336 TCACAAGGTTTTGGGTTGATCAT 58.778 39.130 0.00 0.00 38.86 2.45
6805 9671 4.605640 CATCACAAGGTTTTGGGTTGAT 57.394 40.909 0.00 0.00 38.94 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.