Multiple sequence alignment - TraesCS3B01G587400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G587400 chr3B 100.000 6221 0 0 1 6221 813946870 813953090 0.000000e+00 11489.0
1 TraesCS3B01G587400 chr3B 83.252 3481 502 48 1001 4442 815050802 815047364 0.000000e+00 3123.0
2 TraesCS3B01G587400 chr3B 83.745 2750 418 21 997 3724 813961135 813963877 0.000000e+00 2575.0
3 TraesCS3B01G587400 chr3B 85.452 1794 247 10 1783 3566 814172568 814170779 0.000000e+00 1855.0
4 TraesCS3B01G587400 chr3B 85.228 941 131 7 2602 3538 814162358 814161422 0.000000e+00 961.0
5 TraesCS3B01G587400 chr3B 86.737 754 96 3 1000 1751 814173381 814172630 0.000000e+00 835.0
6 TraesCS3B01G587400 chr3B 79.850 665 116 11 3777 4432 813964149 813964804 2.630000e-128 470.0
7 TraesCS3B01G587400 chr3B 78.222 225 45 4 4540 4762 815047227 815047005 2.340000e-29 141.0
8 TraesCS3B01G587400 chr3A 94.253 5638 222 35 199 5747 737206355 737211979 0.000000e+00 8523.0
9 TraesCS3B01G587400 chr3A 84.182 2750 406 20 997 3724 737214605 737217347 0.000000e+00 2641.0
10 TraesCS3B01G587400 chr3A 85.528 1921 251 17 1817 3726 737290001 737291905 0.000000e+00 1982.0
11 TraesCS3B01G587400 chr3A 86.515 749 101 0 998 1746 737289218 737289966 0.000000e+00 824.0
12 TraesCS3B01G587400 chr3A 88.780 410 24 7 5774 6173 737211976 737212373 3.370000e-132 483.0
13 TraesCS3B01G587400 chr3A 79.850 665 116 13 3777 4432 737217619 737218274 2.630000e-128 470.0
14 TraesCS3B01G587400 chr3A 77.641 568 57 42 5413 5966 737276935 737277446 1.320000e-71 281.0
15 TraesCS3B01G587400 chr3A 100.000 49 0 0 6173 6221 212122780 212122732 2.390000e-14 91.6
16 TraesCS3B01G587400 chr3A 100.000 49 0 0 6173 6221 212129408 212129360 2.390000e-14 91.6
17 TraesCS3B01G587400 chr3A 100.000 49 0 0 6173 6221 610424215 610424263 2.390000e-14 91.6
18 TraesCS3B01G587400 chrUn 94.567 5503 207 24 684 6173 46218389 46223812 0.000000e+00 8421.0
19 TraesCS3B01G587400 chrUn 84.012 2752 407 24 997 3724 46226524 46229266 0.000000e+00 2614.0
20 TraesCS3B01G587400 chrUn 95.661 484 14 4 199 675 46217868 46218351 0.000000e+00 771.0
21 TraesCS3B01G587400 chrUn 80.150 665 114 13 3777 4432 46229538 46230193 1.210000e-131 481.0
22 TraesCS3B01G587400 chr7B 79.190 1605 296 33 997 2576 714598282 714596691 0.000000e+00 1079.0
23 TraesCS3B01G587400 chr7B 100.000 49 0 0 6173 6221 204002869 204002821 2.390000e-14 91.6
24 TraesCS3B01G587400 chr1B 74.374 2634 559 92 989 3592 6849574 6847027 0.000000e+00 1018.0
25 TraesCS3B01G587400 chr7A 81.113 683 118 8 1783 2458 713106368 713105690 2.550000e-148 536.0
26 TraesCS3B01G587400 chr7A 92.000 200 15 1 1 199 405436327 405436128 4.750000e-71 279.0
27 TraesCS3B01G587400 chr6D 96.517 201 6 1 1 200 69918748 69918548 1.290000e-86 331.0
28 TraesCS3B01G587400 chr4A 95.588 204 7 2 1 203 501778685 501778483 6.010000e-85 326.0
29 TraesCS3B01G587400 chr4A 100.000 50 0 0 6172 6221 586082611 586082660 6.640000e-15 93.5
30 TraesCS3B01G587400 chr4A 100.000 49 0 0 6173 6221 586087961 586088009 2.390000e-14 91.6
31 TraesCS3B01G587400 chr1D 96.020 201 7 1 3 202 463388480 463388680 6.010000e-85 326.0
32 TraesCS3B01G587400 chr3D 80.183 328 58 3 3843 4166 612267597 612267921 8.060000e-59 239.0
33 TraesCS3B01G587400 chr2A 91.954 87 6 1 114 199 528899206 528899120 3.050000e-23 121.0
34 TraesCS3B01G587400 chr2A 100.000 54 0 0 6168 6221 713928959 713928906 3.970000e-17 100.0
35 TraesCS3B01G587400 chr7D 100.000 49 0 0 6173 6221 237548397 237548349 2.390000e-14 91.6
36 TraesCS3B01G587400 chr5B 100.000 49 0 0 6173 6221 599612346 599612394 2.390000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G587400 chr3B 813946870 813953090 6220 False 11489.00 11489 100.00000 1 6221 1 chr3B.!!$F1 6220
1 TraesCS3B01G587400 chr3B 815047005 815050802 3797 True 1632.00 3123 80.73700 1001 4762 2 chr3B.!!$R3 3761
2 TraesCS3B01G587400 chr3B 813961135 813964804 3669 False 1522.50 2575 81.79750 997 4432 2 chr3B.!!$F2 3435
3 TraesCS3B01G587400 chr3B 814170779 814173381 2602 True 1345.00 1855 86.09450 1000 3566 2 chr3B.!!$R2 2566
4 TraesCS3B01G587400 chr3B 814161422 814162358 936 True 961.00 961 85.22800 2602 3538 1 chr3B.!!$R1 936
5 TraesCS3B01G587400 chr3A 737206355 737218274 11919 False 3029.25 8523 86.76625 199 6173 4 chr3A.!!$F3 5974
6 TraesCS3B01G587400 chr3A 737289218 737291905 2687 False 1403.00 1982 86.02150 998 3726 2 chr3A.!!$F4 2728
7 TraesCS3B01G587400 chr3A 737276935 737277446 511 False 281.00 281 77.64100 5413 5966 1 chr3A.!!$F2 553
8 TraesCS3B01G587400 chrUn 46217868 46230193 12325 False 3071.75 8421 88.59750 199 6173 4 chrUn.!!$F1 5974
9 TraesCS3B01G587400 chr7B 714596691 714598282 1591 True 1079.00 1079 79.19000 997 2576 1 chr7B.!!$R2 1579
10 TraesCS3B01G587400 chr1B 6847027 6849574 2547 True 1018.00 1018 74.37400 989 3592 1 chr1B.!!$R1 2603
11 TraesCS3B01G587400 chr7A 713105690 713106368 678 True 536.00 536 81.11300 1783 2458 1 chr7A.!!$R2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.098200 CTGATTGGAGCACGCACATG 59.902 55.000 0.0 0.0 0.0 3.21 F
135 136 0.107410 TGATTTTCGCCCATACCGCT 60.107 50.000 0.0 0.0 0.0 5.52 F
1600 1657 0.103026 CAATGCGGATCTCTCGGTCA 59.897 55.000 0.0 0.0 0.0 4.02 F
2941 3066 0.597637 CTGTCAAGAACTGCGTCGGT 60.598 55.000 0.0 0.0 0.0 4.69 F
3626 3761 0.375106 GCACGCTCAGCATTTCCTAC 59.625 55.000 0.0 0.0 0.0 3.18 F
4366 4501 1.141657 GGTCCATATTCAGCAGCAGGA 59.858 52.381 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 1657 1.051812 CCTACTCCAGCGATGGGAAT 58.948 55.000 21.53 8.19 33.11 3.01 R
1610 1667 1.152226 CCTAGGCCCCCTACTCCAG 60.152 68.421 0.00 0.00 34.61 3.86 R
3595 3730 1.421410 GAGCGTGCCATTCTACCGTG 61.421 60.000 0.00 0.00 0.00 4.94 R
3992 4127 0.036388 TGCCAGAGGGAAATCGTGAC 60.036 55.000 0.00 0.00 35.59 3.67 R
4524 4659 0.249120 TCAACCCACTGCACCGATAG 59.751 55.000 0.00 0.00 0.00 2.08 R
6174 6396 0.106419 TCCCAAACCCACCACACTTC 60.106 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.102897 CCCTGTATCTAACCTACTGATTGG 57.897 45.833 0.00 0.00 0.00 3.16
24 25 5.839063 CCCTGTATCTAACCTACTGATTGGA 59.161 44.000 0.00 0.00 0.00 3.53
25 26 6.015010 CCCTGTATCTAACCTACTGATTGGAG 60.015 46.154 0.00 0.00 0.00 3.86
26 27 6.406692 TGTATCTAACCTACTGATTGGAGC 57.593 41.667 0.00 0.00 0.00 4.70
27 28 5.897250 TGTATCTAACCTACTGATTGGAGCA 59.103 40.000 0.00 0.00 0.00 4.26
28 29 4.737855 TCTAACCTACTGATTGGAGCAC 57.262 45.455 0.00 0.00 0.00 4.40
29 30 2.386661 AACCTACTGATTGGAGCACG 57.613 50.000 0.00 0.00 0.00 5.34
30 31 0.108138 ACCTACTGATTGGAGCACGC 60.108 55.000 0.00 0.00 0.00 5.34
31 32 0.108186 CCTACTGATTGGAGCACGCA 60.108 55.000 0.00 0.00 0.00 5.24
32 33 1.002366 CTACTGATTGGAGCACGCAC 58.998 55.000 0.00 0.00 0.00 5.34
33 34 0.320050 TACTGATTGGAGCACGCACA 59.680 50.000 0.00 0.00 0.00 4.57
34 35 0.321919 ACTGATTGGAGCACGCACAT 60.322 50.000 0.00 0.00 0.00 3.21
35 36 0.098200 CTGATTGGAGCACGCACATG 59.902 55.000 0.00 0.00 0.00 3.21
36 37 1.226491 GATTGGAGCACGCACATGC 60.226 57.895 0.00 0.00 46.50 4.06
42 43 3.356267 GCACGCACATGCACAGGA 61.356 61.111 4.49 0.00 45.39 3.86
43 44 2.865308 CACGCACATGCACAGGAG 59.135 61.111 4.49 0.00 42.21 3.69
44 45 3.052082 ACGCACATGCACAGGAGC 61.052 61.111 4.49 0.00 42.21 4.70
45 46 4.156622 CGCACATGCACAGGAGCG 62.157 66.667 12.14 12.14 44.19 5.03
46 47 4.471726 GCACATGCACAGGAGCGC 62.472 66.667 0.00 0.00 41.59 5.92
47 48 3.807538 CACATGCACAGGAGCGCC 61.808 66.667 2.29 0.00 37.31 6.53
70 71 3.719214 CGGCCACCGCTAGAAATC 58.281 61.111 2.24 0.00 41.17 2.17
71 72 1.144057 CGGCCACCGCTAGAAATCT 59.856 57.895 2.24 0.00 41.17 2.40
72 73 1.154205 CGGCCACCGCTAGAAATCTG 61.154 60.000 2.24 0.00 41.17 2.90
73 74 1.440145 GGCCACCGCTAGAAATCTGC 61.440 60.000 0.00 0.00 34.44 4.26
74 75 0.462759 GCCACCGCTAGAAATCTGCT 60.463 55.000 0.00 0.00 0.00 4.24
75 76 1.293924 CCACCGCTAGAAATCTGCTG 58.706 55.000 0.00 0.00 0.00 4.41
76 77 1.293924 CACCGCTAGAAATCTGCTGG 58.706 55.000 0.00 4.42 0.00 4.85
77 78 1.134699 CACCGCTAGAAATCTGCTGGA 60.135 52.381 0.00 0.00 0.00 3.86
78 79 1.555075 ACCGCTAGAAATCTGCTGGAA 59.445 47.619 0.00 0.00 0.00 3.53
79 80 2.171448 ACCGCTAGAAATCTGCTGGAAT 59.829 45.455 0.00 0.00 0.00 3.01
80 81 2.805099 CCGCTAGAAATCTGCTGGAATC 59.195 50.000 0.00 0.00 0.00 2.52
81 82 3.461061 CGCTAGAAATCTGCTGGAATCA 58.539 45.455 0.00 0.00 0.00 2.57
82 83 3.493877 CGCTAGAAATCTGCTGGAATCAG 59.506 47.826 0.00 0.00 43.64 2.90
83 84 4.450053 GCTAGAAATCTGCTGGAATCAGT 58.550 43.478 0.00 0.00 42.78 3.41
84 85 4.880696 GCTAGAAATCTGCTGGAATCAGTT 59.119 41.667 0.00 0.00 42.78 3.16
85 86 6.051717 GCTAGAAATCTGCTGGAATCAGTTA 58.948 40.000 0.00 0.00 42.78 2.24
86 87 6.540189 GCTAGAAATCTGCTGGAATCAGTTAA 59.460 38.462 0.00 0.00 42.78 2.01
87 88 6.749923 AGAAATCTGCTGGAATCAGTTAAC 57.250 37.500 0.00 0.00 42.78 2.01
88 89 5.352569 AGAAATCTGCTGGAATCAGTTAACG 59.647 40.000 0.00 0.00 42.78 3.18
89 90 3.678056 TCTGCTGGAATCAGTTAACGT 57.322 42.857 0.00 0.00 42.78 3.99
90 91 4.002906 TCTGCTGGAATCAGTTAACGTT 57.997 40.909 5.88 5.88 42.78 3.99
91 92 5.142061 TCTGCTGGAATCAGTTAACGTTA 57.858 39.130 3.29 3.29 42.78 3.18
92 93 4.927425 TCTGCTGGAATCAGTTAACGTTAC 59.073 41.667 7.70 3.77 42.78 2.50
93 94 4.633175 TGCTGGAATCAGTTAACGTTACA 58.367 39.130 7.70 3.44 42.78 2.41
94 95 4.688879 TGCTGGAATCAGTTAACGTTACAG 59.311 41.667 20.29 20.29 42.78 2.74
95 96 4.689345 GCTGGAATCAGTTAACGTTACAGT 59.311 41.667 22.96 0.11 42.78 3.55
96 97 5.178809 GCTGGAATCAGTTAACGTTACAGTT 59.821 40.000 22.96 0.00 42.78 3.16
97 98 6.617953 GCTGGAATCAGTTAACGTTACAGTTC 60.618 42.308 22.96 8.20 42.78 3.01
98 99 6.282167 TGGAATCAGTTAACGTTACAGTTCA 58.718 36.000 7.70 0.00 35.70 3.18
99 100 6.932400 TGGAATCAGTTAACGTTACAGTTCAT 59.068 34.615 7.70 0.00 35.70 2.57
100 101 8.089597 TGGAATCAGTTAACGTTACAGTTCATA 58.910 33.333 7.70 0.00 35.70 2.15
101 102 8.592998 GGAATCAGTTAACGTTACAGTTCATAG 58.407 37.037 7.70 0.00 35.70 2.23
102 103 9.350357 GAATCAGTTAACGTTACAGTTCATAGA 57.650 33.333 7.70 0.00 35.70 1.98
103 104 9.701098 AATCAGTTAACGTTACAGTTCATAGAA 57.299 29.630 7.70 0.00 35.70 2.10
104 105 8.511465 TCAGTTAACGTTACAGTTCATAGAAC 57.489 34.615 7.70 0.77 35.70 3.01
105 106 7.596248 TCAGTTAACGTTACAGTTCATAGAACC 59.404 37.037 7.70 0.00 35.70 3.62
106 107 7.383029 CAGTTAACGTTACAGTTCATAGAACCA 59.617 37.037 7.70 0.00 35.70 3.67
107 108 7.927629 AGTTAACGTTACAGTTCATAGAACCAA 59.072 33.333 7.70 0.00 35.70 3.67
108 109 8.550376 GTTAACGTTACAGTTCATAGAACCAAA 58.450 33.333 7.70 0.00 35.70 3.28
109 110 6.535274 ACGTTACAGTTCATAGAACCAAAC 57.465 37.500 6.29 7.57 0.00 2.93
110 111 6.050432 ACGTTACAGTTCATAGAACCAAACA 58.950 36.000 6.29 0.00 0.00 2.83
111 112 6.202188 ACGTTACAGTTCATAGAACCAAACAG 59.798 38.462 6.29 7.57 0.00 3.16
112 113 6.422701 CGTTACAGTTCATAGAACCAAACAGA 59.577 38.462 6.29 0.00 0.00 3.41
113 114 7.359264 CGTTACAGTTCATAGAACCAAACAGAG 60.359 40.741 6.29 0.00 0.00 3.35
114 115 5.930135 ACAGTTCATAGAACCAAACAGAGT 58.070 37.500 6.29 0.00 0.00 3.24
115 116 6.357367 ACAGTTCATAGAACCAAACAGAGTT 58.643 36.000 6.29 0.00 0.00 3.01
116 117 6.828785 ACAGTTCATAGAACCAAACAGAGTTT 59.171 34.615 6.29 0.00 0.00 2.66
117 118 7.134815 CAGTTCATAGAACCAAACAGAGTTTG 58.865 38.462 14.02 14.02 0.00 2.93
118 119 7.012327 CAGTTCATAGAACCAAACAGAGTTTGA 59.988 37.037 20.66 4.28 0.00 2.69
119 120 7.721399 AGTTCATAGAACCAAACAGAGTTTGAT 59.279 33.333 20.66 11.05 0.00 2.57
120 121 8.352942 GTTCATAGAACCAAACAGAGTTTGATT 58.647 33.333 20.66 12.28 0.00 2.57
121 122 8.463930 TCATAGAACCAAACAGAGTTTGATTT 57.536 30.769 20.66 13.94 0.00 2.17
122 123 8.912988 TCATAGAACCAAACAGAGTTTGATTTT 58.087 29.630 20.66 10.23 0.00 1.82
123 124 9.185192 CATAGAACCAAACAGAGTTTGATTTTC 57.815 33.333 20.66 17.77 0.00 2.29
124 125 6.265577 AGAACCAAACAGAGTTTGATTTTCG 58.734 36.000 20.66 8.04 0.00 3.46
125 126 4.359706 ACCAAACAGAGTTTGATTTTCGC 58.640 39.130 20.66 0.00 0.00 4.70
126 127 3.735746 CCAAACAGAGTTTGATTTTCGCC 59.264 43.478 20.66 0.00 0.00 5.54
127 128 3.643159 AACAGAGTTTGATTTTCGCCC 57.357 42.857 0.00 0.00 0.00 6.13
128 129 2.582052 ACAGAGTTTGATTTTCGCCCA 58.418 42.857 0.00 0.00 0.00 5.36
129 130 3.157087 ACAGAGTTTGATTTTCGCCCAT 58.843 40.909 0.00 0.00 0.00 4.00
130 131 4.331968 ACAGAGTTTGATTTTCGCCCATA 58.668 39.130 0.00 0.00 0.00 2.74
131 132 4.156008 ACAGAGTTTGATTTTCGCCCATAC 59.844 41.667 0.00 0.00 0.00 2.39
132 133 3.694566 AGAGTTTGATTTTCGCCCATACC 59.305 43.478 0.00 0.00 0.00 2.73
133 134 2.422127 AGTTTGATTTTCGCCCATACCG 59.578 45.455 0.00 0.00 0.00 4.02
134 135 0.736053 TTGATTTTCGCCCATACCGC 59.264 50.000 0.00 0.00 0.00 5.68
135 136 0.107410 TGATTTTCGCCCATACCGCT 60.107 50.000 0.00 0.00 0.00 5.52
136 137 1.021968 GATTTTCGCCCATACCGCTT 58.978 50.000 0.00 0.00 0.00 4.68
137 138 2.215196 GATTTTCGCCCATACCGCTTA 58.785 47.619 0.00 0.00 0.00 3.09
138 139 1.371595 TTTTCGCCCATACCGCTTAC 58.628 50.000 0.00 0.00 0.00 2.34
139 140 0.249676 TTTCGCCCATACCGCTTACA 59.750 50.000 0.00 0.00 0.00 2.41
140 141 0.179094 TTCGCCCATACCGCTTACAG 60.179 55.000 0.00 0.00 0.00 2.74
141 142 1.143183 CGCCCATACCGCTTACAGT 59.857 57.895 0.00 0.00 0.00 3.55
142 143 1.151777 CGCCCATACCGCTTACAGTG 61.152 60.000 0.00 0.00 0.00 3.66
143 144 1.436983 GCCCATACCGCTTACAGTGC 61.437 60.000 0.00 0.00 0.00 4.40
153 154 3.824414 GCTTACAGTGCGGTGTAATTT 57.176 42.857 10.25 0.00 41.09 1.82
154 155 3.488489 GCTTACAGTGCGGTGTAATTTG 58.512 45.455 10.25 2.59 41.09 2.32
155 156 3.187637 GCTTACAGTGCGGTGTAATTTGA 59.812 43.478 10.25 0.00 41.09 2.69
156 157 4.142687 GCTTACAGTGCGGTGTAATTTGAT 60.143 41.667 10.25 0.00 41.09 2.57
157 158 5.619086 GCTTACAGTGCGGTGTAATTTGATT 60.619 40.000 10.25 0.00 41.09 2.57
158 159 6.402766 GCTTACAGTGCGGTGTAATTTGATTA 60.403 38.462 10.25 0.00 41.09 1.75
159 160 5.291293 ACAGTGCGGTGTAATTTGATTAC 57.709 39.130 4.32 4.32 44.13 1.89
160 161 4.142988 ACAGTGCGGTGTAATTTGATTACG 60.143 41.667 6.40 0.00 46.22 3.18
161 162 3.998341 AGTGCGGTGTAATTTGATTACGT 59.002 39.130 0.00 0.00 46.22 3.57
162 163 4.453136 AGTGCGGTGTAATTTGATTACGTT 59.547 37.500 0.00 0.00 46.22 3.99
163 164 5.049267 AGTGCGGTGTAATTTGATTACGTTT 60.049 36.000 0.00 0.00 46.22 3.60
164 165 5.058734 GTGCGGTGTAATTTGATTACGTTTG 59.941 40.000 0.00 0.00 46.22 2.93
165 166 4.029750 GCGGTGTAATTTGATTACGTTTGC 59.970 41.667 0.00 4.69 46.22 3.68
166 167 4.258817 CGGTGTAATTTGATTACGTTTGCG 59.741 41.667 0.00 0.00 46.22 4.85
182 183 3.648982 CGTTTGCGCCACTGCTCA 61.649 61.111 4.18 0.00 35.36 4.26
183 184 2.050985 GTTTGCGCCACTGCTCAC 60.051 61.111 4.18 0.00 30.56 3.51
184 185 3.648982 TTTGCGCCACTGCTCACG 61.649 61.111 4.18 0.00 30.56 4.35
185 186 4.600576 TTGCGCCACTGCTCACGA 62.601 61.111 4.18 0.00 30.56 4.35
186 187 4.600576 TGCGCCACTGCTCACGAA 62.601 61.111 4.18 0.00 35.36 3.85
187 188 4.077188 GCGCCACTGCTCACGAAC 62.077 66.667 0.00 0.00 34.43 3.95
188 189 3.414700 CGCCACTGCTCACGAACC 61.415 66.667 0.00 0.00 34.43 3.62
189 190 2.280797 GCCACTGCTCACGAACCA 60.281 61.111 0.00 0.00 33.53 3.67
190 191 1.891919 GCCACTGCTCACGAACCAA 60.892 57.895 0.00 0.00 33.53 3.67
191 192 1.444119 GCCACTGCTCACGAACCAAA 61.444 55.000 0.00 0.00 33.53 3.28
192 193 0.307760 CCACTGCTCACGAACCAAAC 59.692 55.000 0.00 0.00 0.00 2.93
193 194 1.013596 CACTGCTCACGAACCAAACA 58.986 50.000 0.00 0.00 0.00 2.83
194 195 1.014352 ACTGCTCACGAACCAAACAC 58.986 50.000 0.00 0.00 0.00 3.32
195 196 0.307760 CTGCTCACGAACCAAACACC 59.692 55.000 0.00 0.00 0.00 4.16
196 197 0.107410 TGCTCACGAACCAAACACCT 60.107 50.000 0.00 0.00 0.00 4.00
197 198 0.586802 GCTCACGAACCAAACACCTC 59.413 55.000 0.00 0.00 0.00 3.85
259 260 4.532126 ACCATCCACTCTGTTCACATAGAA 59.468 41.667 0.00 0.00 0.00 2.10
264 270 4.153117 CCACTCTGTTCACATAGAAACTGC 59.847 45.833 0.00 0.00 38.13 4.40
294 300 2.611225 ACTGCTAAGTGCTATGAGGC 57.389 50.000 0.00 0.00 43.37 4.70
295 301 1.833630 ACTGCTAAGTGCTATGAGGCA 59.166 47.619 0.00 0.00 43.37 4.75
401 412 6.649557 CCTCGAATTTTACTACCTCAAGTGTT 59.350 38.462 0.00 0.00 0.00 3.32
414 425 4.818546 CCTCAAGTGTTATGCTATTCCCTG 59.181 45.833 0.00 0.00 0.00 4.45
435 446 4.709250 TGTTTGCCTATGTGTCACAGTTA 58.291 39.130 12.03 0.00 0.00 2.24
601 620 5.270967 GGGATACAAACTGCTAGCTGTAGC 61.271 50.000 25.25 20.81 45.99 3.58
681 708 3.436496 GAACTACCTTCGGAGATGTTCG 58.564 50.000 0.00 0.00 35.04 3.95
682 709 2.719739 ACTACCTTCGGAGATGTTCGA 58.280 47.619 0.00 0.00 35.04 3.71
691 741 1.134699 GGAGATGTTCGAGCACCATGA 60.135 52.381 3.33 0.00 0.00 3.07
739 789 5.985175 TGTTACATATGATCCCCCTTTCA 57.015 39.130 10.38 0.00 0.00 2.69
740 790 5.690865 TGTTACATATGATCCCCCTTTCAC 58.309 41.667 10.38 0.00 0.00 3.18
906 956 1.074775 TTTTGCAGACCCAGGCGAT 59.925 52.632 0.00 0.00 0.00 4.58
962 1015 4.082125 GGATCTCACACCACCATTTTCTT 58.918 43.478 0.00 0.00 0.00 2.52
967 1020 2.226437 CACACCACCATTTTCTTCTCCG 59.774 50.000 0.00 0.00 0.00 4.63
970 1023 0.447801 CACCATTTTCTTCTCCGCCG 59.552 55.000 0.00 0.00 0.00 6.46
1045 1098 1.817099 GTCGGGCCATTGCTCTCAG 60.817 63.158 4.39 0.00 35.06 3.35
1246 1302 2.416260 CCTACGAGGCTAACGGGC 59.584 66.667 0.55 0.00 41.20 6.13
1357 1414 1.064906 TCACCACCCACAACCGTTTTA 60.065 47.619 0.00 0.00 0.00 1.52
1542 1599 0.593773 GCAGATCGAGAAGCCGAGAC 60.594 60.000 0.00 0.00 42.21 3.36
1564 1621 9.601217 GAGACACTAAGAATATTGTTGGTACAT 57.399 33.333 12.96 3.78 39.30 2.29
1600 1657 0.103026 CAATGCGGATCTCTCGGTCA 59.897 55.000 0.00 0.00 0.00 4.02
1610 1667 0.598680 CTCTCGGTCATTCCCATCGC 60.599 60.000 0.00 0.00 0.00 4.58
2075 2173 2.107204 TGCAGAAGGAAGAAGAAAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
2118 2216 3.974912 TGATGAGATCGTGAAGAGATGC 58.025 45.455 0.00 0.00 0.00 3.91
2464 2565 5.244402 TCATTCTTTGTGGATGTGAAGCAAT 59.756 36.000 0.00 0.00 0.00 3.56
2672 2788 8.457261 TGAAAAACCAGAAATTGTTTTGAATGG 58.543 29.630 5.43 0.00 42.22 3.16
2709 2825 4.935352 ATCTCCAGCTATTCAGACACTC 57.065 45.455 0.00 0.00 0.00 3.51
2731 2847 8.370940 CACTCCTGTGTGATAGTTATATGGAAT 58.629 37.037 0.00 0.00 40.12 3.01
2808 2933 1.134371 CGGAGAAGTCCATTCCCCTTC 60.134 57.143 0.00 0.00 44.18 3.46
2941 3066 0.597637 CTGTCAAGAACTGCGTCGGT 60.598 55.000 0.00 0.00 0.00 4.69
3189 3320 4.267349 AGATGCAAAAGCAGCAAATCTT 57.733 36.364 8.48 0.00 46.27 2.40
3372 3504 5.335127 CGAAACATGGTTGAAATCCATCTC 58.665 41.667 0.00 0.00 42.92 2.75
3494 3626 4.340617 GGATGGTGGGAATCAAGTAACAA 58.659 43.478 0.00 0.00 0.00 2.83
3514 3646 5.762279 ACAAGGAACAAGGAAAAGAGGTAA 58.238 37.500 0.00 0.00 0.00 2.85
3570 3702 2.792674 CTGTGCAAAGCTGACAACATTG 59.207 45.455 0.00 0.00 0.00 2.82
3595 3730 2.161211 GCAACACTGCTTGGAGAATCTC 59.839 50.000 0.71 0.71 45.74 2.75
3608 3743 3.385577 GAGAATCTCACGGTAGAATGGC 58.614 50.000 5.22 0.00 0.00 4.40
3612 3747 1.421410 CTCACGGTAGAATGGCACGC 61.421 60.000 0.00 0.00 0.00 5.34
3626 3761 0.375106 GCACGCTCAGCATTTCCTAC 59.625 55.000 0.00 0.00 0.00 3.18
3627 3762 1.725641 CACGCTCAGCATTTCCTACA 58.274 50.000 0.00 0.00 0.00 2.74
3749 3884 3.485394 TGTATGTTGCACACTGTGGAAT 58.515 40.909 17.89 7.01 44.75 3.01
3750 3885 3.252944 TGTATGTTGCACACTGTGGAATG 59.747 43.478 17.89 2.64 44.75 2.67
3765 3900 4.035909 TGTGGAATGATCAAAGCATCATCG 59.964 41.667 0.00 0.00 41.78 3.84
3874 4009 4.586841 AGATGTTCCTGTGGATAGCTAGAC 59.413 45.833 0.00 0.00 0.00 2.59
3959 4094 3.059325 GCAGCGGCTGATATTAGTTTGAG 60.059 47.826 32.72 1.89 36.96 3.02
3972 4107 3.393089 AGTTTGAGACAAGCGATGAGT 57.607 42.857 0.00 0.00 0.00 3.41
3992 4127 4.091524 GTGCCATGGAGAAATGGAACCG 62.092 54.545 18.40 0.00 46.91 4.44
4042 4177 5.076873 AGTTAATTGGCTTTAAGTCAGGCA 58.923 37.500 0.00 0.00 44.60 4.75
4048 4183 3.245087 TGGCTTTAAGTCAGGCATAACCA 60.245 43.478 0.00 0.00 41.64 3.67
4141 4276 3.567585 AGAGAAAGAGTTCCAAAGCTTGC 59.432 43.478 0.00 0.00 33.92 4.01
4175 4310 4.442706 AGTCTAAACATTATGTCCTGCGG 58.557 43.478 0.00 0.00 0.00 5.69
4362 4497 2.492012 CTCAGGTCCATATTCAGCAGC 58.508 52.381 0.00 0.00 0.00 5.25
4366 4501 1.141657 GGTCCATATTCAGCAGCAGGA 59.858 52.381 0.00 0.00 0.00 3.86
4401 4536 2.198287 GCCATCAGCATCGGCCATT 61.198 57.895 2.24 0.00 42.56 3.16
4428 4563 2.365617 AGGCTCACCACCTGTATATTCG 59.634 50.000 0.00 0.00 39.06 3.34
4458 4593 5.187576 GCTCCCATGCTTAGAAGAGATAGAT 59.812 44.000 0.00 0.00 0.00 1.98
4464 4599 8.349245 CCATGCTTAGAAGAGATAGATATACGG 58.651 40.741 0.00 0.00 0.00 4.02
4467 4602 6.263617 GCTTAGAAGAGATAGATATACGGGGG 59.736 46.154 0.00 0.00 0.00 5.40
4487 4622 1.523032 GCGACGGATTAACAGGGGG 60.523 63.158 0.00 0.00 0.00 5.40
4503 4638 2.193248 GGCCTTGATCTTCCCCCG 59.807 66.667 0.00 0.00 0.00 5.73
4516 4651 4.760047 CCCCGTCCCTCAAGCACG 62.760 72.222 0.00 0.00 0.00 5.34
4518 4653 2.642254 CCCGTCCCTCAAGCACGTA 61.642 63.158 0.00 0.00 0.00 3.57
4585 4720 2.282958 AGTTCCCGTCGCTGGAGA 60.283 61.111 0.00 0.00 32.37 3.71
4605 4740 1.760086 CCTCTCCATCGGGCTCTGT 60.760 63.158 0.00 0.00 0.00 3.41
4635 4770 4.096816 TCCCTACCGGATGGCCCA 62.097 66.667 9.46 0.00 39.70 5.36
4657 4792 2.025155 GAGCATACCCGTCTCTCAGAA 58.975 52.381 0.00 0.00 0.00 3.02
4680 4815 1.130749 CTCAAGGTCTACGACTGTCCG 59.869 57.143 1.55 0.35 32.47 4.79
4735 4870 0.185416 CTTAGGTAGCCTCGAGGGGA 59.815 60.000 32.06 0.00 34.61 4.81
4769 4904 3.545703 CCCATCATCAAGGTTAGTGTCC 58.454 50.000 0.00 0.00 0.00 4.02
4772 4907 5.104527 CCCATCATCAAGGTTAGTGTCCTTA 60.105 44.000 0.00 0.00 42.57 2.69
4786 4921 8.766151 GTTAGTGTCCTTATCTATTTTAGCTGC 58.234 37.037 0.00 0.00 0.00 5.25
4794 4929 8.786898 CCTTATCTATTTTAGCTGCTGCATTTA 58.213 33.333 18.42 0.00 42.74 1.40
4831 4966 5.789575 AGACATCCCTTGCTTCCAGATATAT 59.210 40.000 0.00 0.00 0.00 0.86
4910 5049 4.778213 TGGATTTATTGCTCCAGCTAGT 57.222 40.909 0.00 0.00 42.66 2.57
4920 5059 2.556622 GCTCCAGCTAGTGAGATACCTC 59.443 54.545 10.38 0.00 37.74 3.85
4922 5061 5.293516 GCTCCAGCTAGTGAGATACCTCAT 61.294 50.000 10.38 0.00 43.50 2.90
4953 5092 5.766150 TCGTGTCTCAATTTTTCCATGTT 57.234 34.783 0.00 0.00 0.00 2.71
4964 5103 6.843069 ATTTTTCCATGTTACAGCAAACAC 57.157 33.333 1.95 0.00 41.89 3.32
4966 5105 1.265635 TCCATGTTACAGCAAACACGC 59.734 47.619 1.95 0.00 41.89 5.34
5130 5269 8.935844 TCAGTGTAAACTTTGATGCTACATTAG 58.064 33.333 0.00 0.00 0.00 1.73
5265 5404 2.679837 CACCATCACCATGTGAAGCTAC 59.320 50.000 0.46 0.00 45.96 3.58
5375 5514 5.008331 CACACACAACCTAGGTAGAGTAGA 58.992 45.833 16.67 0.00 0.00 2.59
5376 5515 5.124138 CACACACAACCTAGGTAGAGTAGAG 59.876 48.000 16.67 9.66 0.00 2.43
5387 5527 4.165180 AGGTAGAGTAGAGCTCATGTCTGA 59.835 45.833 17.77 1.42 46.47 3.27
5406 5546 9.739276 ATGTCTGAATAAAGTTGGAGTATTTCA 57.261 29.630 0.00 0.00 0.00 2.69
5411 5551 6.663944 ATAAAGTTGGAGTATTTCACGCTC 57.336 37.500 0.00 0.00 0.00 5.03
5466 5624 5.645497 GGTATGTCTCTGCATTTCTTGTTCT 59.355 40.000 0.00 0.00 0.00 3.01
5479 5639 8.155923 GCATTTCTTGTTCTAAATAAGTTTGCG 58.844 33.333 0.00 0.00 32.21 4.85
5530 5692 6.159293 TGTTTCAGTCAGAGCAAGTATGTAG 58.841 40.000 0.00 0.00 0.00 2.74
5569 5731 7.234187 ACGTTCATATTTGTGTGCTATGTAG 57.766 36.000 0.00 0.00 0.00 2.74
5573 5735 7.924103 TCATATTTGTGTGCTATGTAGTACG 57.076 36.000 4.26 0.00 41.09 3.67
5574 5736 7.485810 TCATATTTGTGTGCTATGTAGTACGT 58.514 34.615 0.00 0.00 41.09 3.57
5575 5737 8.623030 TCATATTTGTGTGCTATGTAGTACGTA 58.377 33.333 2.29 2.29 41.09 3.57
5576 5738 8.902735 CATATTTGTGTGCTATGTAGTACGTAG 58.097 37.037 20.83 20.83 41.09 3.51
5578 5740 6.983474 TTGTGTGCTATGTAGTACGTAGTA 57.017 37.500 24.11 19.50 45.11 1.82
5638 5811 0.623723 TGCTGGTCCAGGATTTACCC 59.376 55.000 20.72 1.61 40.05 3.69
5814 6012 8.041143 ACCAAATGCAGGGAGTAATATTAGTA 57.959 34.615 8.67 0.00 0.00 1.82
5862 6061 7.917505 AGCCTAATTATTTTCTTTTCTGCATCG 59.082 33.333 0.00 0.00 0.00 3.84
5865 6064 9.226345 CTAATTATTTTCTTTTCTGCATCGTCC 57.774 33.333 0.00 0.00 0.00 4.79
5866 6065 6.567687 TTATTTTCTTTTCTGCATCGTCCA 57.432 33.333 0.00 0.00 0.00 4.02
5962 6170 7.750229 TGCTAAGAGAAATTTGTGAGAATGT 57.250 32.000 0.00 0.00 0.00 2.71
5963 6171 7.810658 TGCTAAGAGAAATTTGTGAGAATGTC 58.189 34.615 0.00 0.00 0.00 3.06
5964 6172 7.445096 TGCTAAGAGAAATTTGTGAGAATGTCA 59.555 33.333 0.00 0.00 0.00 3.58
6014 6234 0.398522 TCCTATGACGACCCATGGCT 60.399 55.000 6.09 0.00 0.00 4.75
6163 6385 2.087646 CAAGGACTTTGGGCTTCTAGC 58.912 52.381 0.00 0.00 41.46 3.42
6183 6405 3.332034 GCGTAAGGTTATGAAGTGTGGT 58.668 45.455 0.00 0.00 38.28 4.16
6184 6406 3.124636 GCGTAAGGTTATGAAGTGTGGTG 59.875 47.826 0.00 0.00 38.28 4.17
6185 6407 3.682858 CGTAAGGTTATGAAGTGTGGTGG 59.317 47.826 0.00 0.00 0.00 4.61
6186 6408 2.879103 AGGTTATGAAGTGTGGTGGG 57.121 50.000 0.00 0.00 0.00 4.61
6187 6409 2.062636 AGGTTATGAAGTGTGGTGGGT 58.937 47.619 0.00 0.00 0.00 4.51
6188 6410 2.445525 AGGTTATGAAGTGTGGTGGGTT 59.554 45.455 0.00 0.00 0.00 4.11
6189 6411 3.117284 AGGTTATGAAGTGTGGTGGGTTT 60.117 43.478 0.00 0.00 0.00 3.27
6190 6412 3.005367 GGTTATGAAGTGTGGTGGGTTTG 59.995 47.826 0.00 0.00 0.00 2.93
6202 8360 2.038426 GGTGGGTTTGGGAAATTTCTGG 59.962 50.000 17.42 0.00 0.00 3.86
6204 8362 3.582647 GTGGGTTTGGGAAATTTCTGGAT 59.417 43.478 17.42 0.00 0.00 3.41
6206 8364 5.247337 GTGGGTTTGGGAAATTTCTGGATAA 59.753 40.000 17.42 4.14 0.00 1.75
6207 8365 5.247337 TGGGTTTGGGAAATTTCTGGATAAC 59.753 40.000 17.42 13.28 0.00 1.89
6209 8367 6.351033 GGGTTTGGGAAATTTCTGGATAACTC 60.351 42.308 17.42 10.81 0.00 3.01
6210 8368 6.437477 GGTTTGGGAAATTTCTGGATAACTCT 59.563 38.462 17.42 0.00 0.00 3.24
6212 8370 6.642733 TGGGAAATTTCTGGATAACTCTCT 57.357 37.500 17.42 0.00 0.00 3.10
6213 8371 7.032598 TGGGAAATTTCTGGATAACTCTCTT 57.967 36.000 17.42 0.00 0.00 2.85
6214 8372 7.112779 TGGGAAATTTCTGGATAACTCTCTTC 58.887 38.462 17.42 0.00 0.00 2.87
6215 8373 6.544197 GGGAAATTTCTGGATAACTCTCTTCC 59.456 42.308 17.42 1.28 0.00 3.46
6217 8375 7.497579 GGAAATTTCTGGATAACTCTCTTCCTC 59.502 40.741 17.42 0.00 0.00 3.71
6219 8377 6.783708 TTTCTGGATAACTCTCTTCCTCTC 57.216 41.667 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.839063 TCCAATCAGTAGGTTAGATACAGGG 59.161 44.000 0.00 0.00 0.00 4.45
1 2 6.517529 GCTCCAATCAGTAGGTTAGATACAGG 60.518 46.154 0.00 0.00 0.00 4.00
2 3 6.040955 TGCTCCAATCAGTAGGTTAGATACAG 59.959 42.308 0.00 0.00 0.00 2.74
3 4 5.897250 TGCTCCAATCAGTAGGTTAGATACA 59.103 40.000 0.00 0.00 0.00 2.29
4 5 6.217294 GTGCTCCAATCAGTAGGTTAGATAC 58.783 44.000 0.00 0.00 0.00 2.24
5 6 5.009710 CGTGCTCCAATCAGTAGGTTAGATA 59.990 44.000 0.00 0.00 0.00 1.98
6 7 4.202161 CGTGCTCCAATCAGTAGGTTAGAT 60.202 45.833 0.00 0.00 0.00 1.98
7 8 3.130516 CGTGCTCCAATCAGTAGGTTAGA 59.869 47.826 0.00 0.00 0.00 2.10
8 9 3.448686 CGTGCTCCAATCAGTAGGTTAG 58.551 50.000 0.00 0.00 0.00 2.34
9 10 2.418197 GCGTGCTCCAATCAGTAGGTTA 60.418 50.000 0.00 0.00 0.00 2.85
10 11 1.676014 GCGTGCTCCAATCAGTAGGTT 60.676 52.381 0.00 0.00 0.00 3.50
11 12 0.108138 GCGTGCTCCAATCAGTAGGT 60.108 55.000 0.00 0.00 0.00 3.08
12 13 0.108186 TGCGTGCTCCAATCAGTAGG 60.108 55.000 0.00 0.00 0.00 3.18
13 14 1.002366 GTGCGTGCTCCAATCAGTAG 58.998 55.000 0.00 0.00 0.00 2.57
14 15 0.320050 TGTGCGTGCTCCAATCAGTA 59.680 50.000 0.00 0.00 0.00 2.74
15 16 0.321919 ATGTGCGTGCTCCAATCAGT 60.322 50.000 0.00 0.00 0.00 3.41
16 17 0.098200 CATGTGCGTGCTCCAATCAG 59.902 55.000 0.00 0.00 0.00 2.90
17 18 1.925415 GCATGTGCGTGCTCCAATCA 61.925 55.000 8.95 0.00 41.82 2.57
18 19 1.226491 GCATGTGCGTGCTCCAATC 60.226 57.895 8.95 0.00 41.82 2.67
19 20 1.972752 TGCATGTGCGTGCTCCAAT 60.973 52.632 16.09 0.00 45.27 3.16
20 21 2.594013 TGCATGTGCGTGCTCCAA 60.594 55.556 16.09 0.00 45.27 3.53
21 22 3.356267 GTGCATGTGCGTGCTCCA 61.356 61.111 16.09 0.00 45.27 3.86
22 23 3.318539 CTGTGCATGTGCGTGCTCC 62.319 63.158 16.09 8.32 45.27 4.70
23 24 2.175078 CTGTGCATGTGCGTGCTC 59.825 61.111 16.09 13.16 45.27 4.26
24 25 3.359523 CCTGTGCATGTGCGTGCT 61.360 61.111 16.09 0.00 45.27 4.40
25 26 3.318539 CTCCTGTGCATGTGCGTGC 62.319 63.158 9.25 9.25 45.83 5.34
26 27 2.865308 CTCCTGTGCATGTGCGTG 59.135 61.111 0.00 0.00 45.83 5.34
27 28 3.052082 GCTCCTGTGCATGTGCGT 61.052 61.111 0.00 0.00 45.83 5.24
28 29 4.156622 CGCTCCTGTGCATGTGCG 62.157 66.667 13.21 13.21 45.83 5.34
54 55 1.440145 GCAGATTTCTAGCGGTGGCC 61.440 60.000 0.00 0.00 41.24 5.36
55 56 0.462759 AGCAGATTTCTAGCGGTGGC 60.463 55.000 0.00 0.00 40.37 5.01
56 57 1.293924 CAGCAGATTTCTAGCGGTGG 58.706 55.000 0.00 0.00 0.00 4.61
57 58 1.134699 TCCAGCAGATTTCTAGCGGTG 60.135 52.381 0.00 0.00 0.00 4.94
58 59 1.195115 TCCAGCAGATTTCTAGCGGT 58.805 50.000 0.00 0.00 0.00 5.68
59 60 2.315925 TTCCAGCAGATTTCTAGCGG 57.684 50.000 0.00 0.00 0.00 5.52
60 61 3.461061 TGATTCCAGCAGATTTCTAGCG 58.539 45.455 0.00 0.00 0.00 4.26
61 62 4.450053 ACTGATTCCAGCAGATTTCTAGC 58.550 43.478 0.00 0.00 44.16 3.42
62 63 7.254252 CGTTAACTGATTCCAGCAGATTTCTAG 60.254 40.741 3.71 0.00 44.16 2.43
63 64 6.535150 CGTTAACTGATTCCAGCAGATTTCTA 59.465 38.462 3.71 0.00 44.16 2.10
64 65 5.352569 CGTTAACTGATTCCAGCAGATTTCT 59.647 40.000 3.71 0.00 44.16 2.52
65 66 5.122396 ACGTTAACTGATTCCAGCAGATTTC 59.878 40.000 3.71 0.00 44.16 2.17
66 67 5.003804 ACGTTAACTGATTCCAGCAGATTT 58.996 37.500 3.71 0.00 44.16 2.17
67 68 4.579869 ACGTTAACTGATTCCAGCAGATT 58.420 39.130 3.71 0.00 44.16 2.40
68 69 4.207891 ACGTTAACTGATTCCAGCAGAT 57.792 40.909 3.71 0.00 44.16 2.90
69 70 3.678056 ACGTTAACTGATTCCAGCAGA 57.322 42.857 3.71 0.00 44.16 4.26
70 71 4.688879 TGTAACGTTAACTGATTCCAGCAG 59.311 41.667 10.11 0.00 44.16 4.24
71 72 4.633175 TGTAACGTTAACTGATTCCAGCA 58.367 39.130 10.11 0.00 44.16 4.41
72 73 4.689345 ACTGTAACGTTAACTGATTCCAGC 59.311 41.667 10.11 0.00 44.16 4.85
73 74 6.422701 TGAACTGTAACGTTAACTGATTCCAG 59.577 38.462 10.11 12.31 45.76 3.86
74 75 6.282167 TGAACTGTAACGTTAACTGATTCCA 58.718 36.000 10.11 0.27 0.00 3.53
75 76 6.774354 TGAACTGTAACGTTAACTGATTCC 57.226 37.500 10.11 0.00 0.00 3.01
76 77 9.350357 TCTATGAACTGTAACGTTAACTGATTC 57.650 33.333 10.11 10.07 0.00 2.52
77 78 9.701098 TTCTATGAACTGTAACGTTAACTGATT 57.299 29.630 10.11 0.69 0.00 2.57
78 79 9.136952 GTTCTATGAACTGTAACGTTAACTGAT 57.863 33.333 10.11 3.87 0.00 2.90
79 80 7.596248 GGTTCTATGAACTGTAACGTTAACTGA 59.404 37.037 10.11 0.00 0.00 3.41
80 81 7.383029 TGGTTCTATGAACTGTAACGTTAACTG 59.617 37.037 10.11 10.54 0.00 3.16
81 82 7.436118 TGGTTCTATGAACTGTAACGTTAACT 58.564 34.615 10.11 0.00 0.00 2.24
82 83 7.642071 TGGTTCTATGAACTGTAACGTTAAC 57.358 36.000 10.11 5.36 0.00 2.01
83 84 8.550376 GTTTGGTTCTATGAACTGTAACGTTAA 58.450 33.333 10.11 0.05 0.00 2.01
84 85 7.710044 TGTTTGGTTCTATGAACTGTAACGTTA 59.290 33.333 3.29 3.29 0.00 3.18
85 86 6.539464 TGTTTGGTTCTATGAACTGTAACGTT 59.461 34.615 5.88 5.88 0.00 3.99
86 87 6.050432 TGTTTGGTTCTATGAACTGTAACGT 58.950 36.000 9.81 0.00 0.00 3.99
87 88 6.422701 TCTGTTTGGTTCTATGAACTGTAACG 59.577 38.462 9.81 0.00 0.00 3.18
88 89 7.441458 ACTCTGTTTGGTTCTATGAACTGTAAC 59.559 37.037 9.81 10.95 0.00 2.50
89 90 7.506114 ACTCTGTTTGGTTCTATGAACTGTAA 58.494 34.615 9.81 2.25 0.00 2.41
90 91 7.062749 ACTCTGTTTGGTTCTATGAACTGTA 57.937 36.000 9.81 0.00 0.00 2.74
91 92 5.930135 ACTCTGTTTGGTTCTATGAACTGT 58.070 37.500 9.81 0.00 0.00 3.55
92 93 6.867662 AACTCTGTTTGGTTCTATGAACTG 57.132 37.500 9.81 0.00 0.00 3.16
93 94 7.054124 TCAAACTCTGTTTGGTTCTATGAACT 58.946 34.615 18.98 0.00 0.00 3.01
94 95 7.259290 TCAAACTCTGTTTGGTTCTATGAAC 57.741 36.000 18.98 2.16 0.00 3.18
95 96 8.463930 AATCAAACTCTGTTTGGTTCTATGAA 57.536 30.769 18.98 1.96 27.25 2.57
96 97 8.463930 AAATCAAACTCTGTTTGGTTCTATGA 57.536 30.769 18.14 2.06 32.10 2.15
97 98 9.185192 GAAAATCAAACTCTGTTTGGTTCTATG 57.815 33.333 18.14 0.00 32.10 2.23
98 99 8.076178 CGAAAATCAAACTCTGTTTGGTTCTAT 58.924 33.333 18.14 10.31 32.10 1.98
99 100 7.414436 CGAAAATCAAACTCTGTTTGGTTCTA 58.586 34.615 18.14 3.83 32.10 2.10
100 101 6.265577 CGAAAATCAAACTCTGTTTGGTTCT 58.734 36.000 18.14 8.09 32.10 3.01
101 102 5.051708 GCGAAAATCAAACTCTGTTTGGTTC 60.052 40.000 18.14 16.94 32.10 3.62
102 103 4.803613 GCGAAAATCAAACTCTGTTTGGTT 59.196 37.500 18.98 16.45 34.50 3.67
103 104 4.359706 GCGAAAATCAAACTCTGTTTGGT 58.640 39.130 18.98 12.02 0.00 3.67
104 105 3.735746 GGCGAAAATCAAACTCTGTTTGG 59.264 43.478 18.98 6.83 0.00 3.28
105 106 3.735746 GGGCGAAAATCAAACTCTGTTTG 59.264 43.478 14.75 14.75 0.00 2.93
106 107 3.383185 TGGGCGAAAATCAAACTCTGTTT 59.617 39.130 0.00 0.00 0.00 2.83
107 108 2.955660 TGGGCGAAAATCAAACTCTGTT 59.044 40.909 0.00 0.00 0.00 3.16
108 109 2.582052 TGGGCGAAAATCAAACTCTGT 58.418 42.857 0.00 0.00 0.00 3.41
109 110 3.855689 ATGGGCGAAAATCAAACTCTG 57.144 42.857 0.00 0.00 0.00 3.35
110 111 3.694566 GGTATGGGCGAAAATCAAACTCT 59.305 43.478 0.00 0.00 0.00 3.24
111 112 3.486875 CGGTATGGGCGAAAATCAAACTC 60.487 47.826 0.00 0.00 0.00 3.01
112 113 2.422127 CGGTATGGGCGAAAATCAAACT 59.578 45.455 0.00 0.00 0.00 2.66
113 114 2.792749 CGGTATGGGCGAAAATCAAAC 58.207 47.619 0.00 0.00 0.00 2.93
114 115 1.133407 GCGGTATGGGCGAAAATCAAA 59.867 47.619 0.00 0.00 0.00 2.69
115 116 0.736053 GCGGTATGGGCGAAAATCAA 59.264 50.000 0.00 0.00 0.00 2.57
116 117 0.107410 AGCGGTATGGGCGAAAATCA 60.107 50.000 0.00 0.00 35.00 2.57
117 118 1.021968 AAGCGGTATGGGCGAAAATC 58.978 50.000 0.00 0.00 35.00 2.17
118 119 1.944709 GTAAGCGGTATGGGCGAAAAT 59.055 47.619 0.00 0.00 35.00 1.82
119 120 1.338864 TGTAAGCGGTATGGGCGAAAA 60.339 47.619 0.00 0.00 35.00 2.29
120 121 0.249676 TGTAAGCGGTATGGGCGAAA 59.750 50.000 0.00 0.00 35.00 3.46
121 122 0.179094 CTGTAAGCGGTATGGGCGAA 60.179 55.000 0.00 0.00 35.00 4.70
122 123 1.324740 ACTGTAAGCGGTATGGGCGA 61.325 55.000 0.00 0.00 37.60 5.54
123 124 1.143183 ACTGTAAGCGGTATGGGCG 59.857 57.895 0.00 0.00 37.60 6.13
124 125 1.436983 GCACTGTAAGCGGTATGGGC 61.437 60.000 0.00 0.00 37.60 5.36
125 126 2.690326 GCACTGTAAGCGGTATGGG 58.310 57.895 0.00 0.00 37.60 4.00
133 134 3.187637 TCAAATTACACCGCACTGTAAGC 59.812 43.478 8.67 0.00 39.43 3.09
134 135 5.545658 ATCAAATTACACCGCACTGTAAG 57.454 39.130 8.67 0.00 39.43 2.34
135 136 5.950758 AATCAAATTACACCGCACTGTAA 57.049 34.783 5.84 5.84 40.17 2.41
136 137 5.062433 CGTAATCAAATTACACCGCACTGTA 59.938 40.000 9.73 0.00 44.08 2.74
137 138 4.142988 CGTAATCAAATTACACCGCACTGT 60.143 41.667 9.73 0.00 44.08 3.55
138 139 4.142988 ACGTAATCAAATTACACCGCACTG 60.143 41.667 9.73 0.00 44.08 3.66
139 140 3.998341 ACGTAATCAAATTACACCGCACT 59.002 39.130 9.73 0.00 44.08 4.40
140 141 4.330740 ACGTAATCAAATTACACCGCAC 57.669 40.909 9.73 0.00 44.08 5.34
141 142 5.147865 CAAACGTAATCAAATTACACCGCA 58.852 37.500 9.73 0.00 44.08 5.69
142 143 4.029750 GCAAACGTAATCAAATTACACCGC 59.970 41.667 9.73 3.82 44.08 5.68
143 144 4.258817 CGCAAACGTAATCAAATTACACCG 59.741 41.667 9.73 0.40 44.08 4.94
144 145 5.658674 CGCAAACGTAATCAAATTACACC 57.341 39.130 9.73 0.00 44.08 4.16
172 173 1.444119 TTTGGTTCGTGAGCAGTGGC 61.444 55.000 0.00 0.00 37.03 5.01
173 174 0.307760 GTTTGGTTCGTGAGCAGTGG 59.692 55.000 0.00 0.00 37.03 4.00
174 175 1.013596 TGTTTGGTTCGTGAGCAGTG 58.986 50.000 0.00 0.00 37.03 3.66
175 176 1.014352 GTGTTTGGTTCGTGAGCAGT 58.986 50.000 0.00 0.00 37.03 4.40
176 177 0.307760 GGTGTTTGGTTCGTGAGCAG 59.692 55.000 0.00 0.00 37.03 4.24
177 178 0.107410 AGGTGTTTGGTTCGTGAGCA 60.107 50.000 0.00 0.00 0.00 4.26
178 179 0.586802 GAGGTGTTTGGTTCGTGAGC 59.413 55.000 0.00 0.00 0.00 4.26
179 180 1.202651 AGGAGGTGTTTGGTTCGTGAG 60.203 52.381 0.00 0.00 0.00 3.51
180 181 0.834612 AGGAGGTGTTTGGTTCGTGA 59.165 50.000 0.00 0.00 0.00 4.35
181 182 1.675552 AAGGAGGTGTTTGGTTCGTG 58.324 50.000 0.00 0.00 0.00 4.35
182 183 3.564053 TTAAGGAGGTGTTTGGTTCGT 57.436 42.857 0.00 0.00 0.00 3.85
183 184 3.818773 ACATTAAGGAGGTGTTTGGTTCG 59.181 43.478 0.00 0.00 0.00 3.95
184 185 4.558697 GCACATTAAGGAGGTGTTTGGTTC 60.559 45.833 0.00 0.00 35.05 3.62
185 186 3.320826 GCACATTAAGGAGGTGTTTGGTT 59.679 43.478 0.00 0.00 35.05 3.67
186 187 2.890945 GCACATTAAGGAGGTGTTTGGT 59.109 45.455 0.00 0.00 35.05 3.67
187 188 2.890311 TGCACATTAAGGAGGTGTTTGG 59.110 45.455 0.00 0.00 35.05 3.28
188 189 4.582701 TTGCACATTAAGGAGGTGTTTG 57.417 40.909 0.00 0.00 35.05 2.93
189 190 4.039124 CCTTTGCACATTAAGGAGGTGTTT 59.961 41.667 8.96 0.00 42.90 2.83
190 191 3.573967 CCTTTGCACATTAAGGAGGTGTT 59.426 43.478 8.96 0.00 42.90 3.32
191 192 3.157087 CCTTTGCACATTAAGGAGGTGT 58.843 45.455 8.96 0.00 42.90 4.16
192 193 2.094545 GCCTTTGCACATTAAGGAGGTG 60.095 50.000 17.36 0.00 42.90 4.00
193 194 2.171003 GCCTTTGCACATTAAGGAGGT 58.829 47.619 17.36 0.00 42.90 3.85
194 195 1.478105 GGCCTTTGCACATTAAGGAGG 59.522 52.381 17.36 2.49 42.90 4.30
195 196 2.450476 AGGCCTTTGCACATTAAGGAG 58.550 47.619 17.36 0.00 42.90 3.69
196 197 2.603075 AGGCCTTTGCACATTAAGGA 57.397 45.000 17.36 0.00 42.90 3.36
197 198 2.689983 CCTAGGCCTTTGCACATTAAGG 59.310 50.000 12.58 10.09 43.08 2.69
264 270 3.375299 GCACTTAGCAGTTTGTATCCCTG 59.625 47.826 0.00 0.00 44.79 4.45
294 300 4.724074 AGCAATGAAATATGTGGTGGTG 57.276 40.909 0.00 0.00 0.00 4.17
295 301 4.621274 GCAAGCAATGAAATATGTGGTGGT 60.621 41.667 0.00 0.00 0.00 4.16
296 302 3.866910 GCAAGCAATGAAATATGTGGTGG 59.133 43.478 0.00 0.00 0.00 4.61
326 337 4.373527 CATTAATGCCATGGAACCACATG 58.626 43.478 18.40 5.91 46.02 3.21
327 338 4.675976 CATTAATGCCATGGAACCACAT 57.324 40.909 18.40 5.90 0.00 3.21
401 412 3.951563 AGGCAAACAGGGAATAGCATA 57.048 42.857 0.00 0.00 0.00 3.14
414 425 4.755123 AGTAACTGTGACACATAGGCAAAC 59.245 41.667 9.11 1.64 36.65 2.93
515 534 8.780249 GTCTAGTTCTCTGATGGTTCTATACTC 58.220 40.741 0.00 0.00 0.00 2.59
601 620 2.125106 GCCTTACCTGGTGCCTCG 60.125 66.667 10.23 0.00 0.00 4.63
681 708 6.488006 ACACATAGGAAAATATCATGGTGCTC 59.512 38.462 0.00 0.00 34.09 4.26
682 709 6.367983 ACACATAGGAAAATATCATGGTGCT 58.632 36.000 0.00 0.00 34.09 4.40
714 764 4.307032 AGGGGGATCATATGTAACATGC 57.693 45.455 1.90 0.00 0.00 4.06
740 790 3.141398 TCCAGCAAAGTAGAACTGCAAG 58.859 45.455 0.00 0.00 38.58 4.01
906 956 8.874156 ACTGGAATACTCTATTGCATATCTTGA 58.126 33.333 0.00 0.00 43.89 3.02
967 1020 2.591715 ACAACTGCAGTCCACGGC 60.592 61.111 21.95 0.00 37.57 5.68
970 1023 1.097547 AGCACACAACTGCAGTCCAC 61.098 55.000 21.95 6.97 39.86 4.02
1045 1098 1.499049 GACACCTTGTCCTTCACGAC 58.501 55.000 0.00 0.00 41.37 4.34
1246 1302 3.120752 TCGTAGTTGAACTCGTCGAAGAG 60.121 47.826 24.21 24.21 43.56 2.85
1600 1657 1.051812 CCTACTCCAGCGATGGGAAT 58.948 55.000 21.53 8.19 33.11 3.01
1610 1667 1.152226 CCTAGGCCCCCTACTCCAG 60.152 68.421 0.00 0.00 34.61 3.86
2075 2173 6.176896 TCAACCATATTAACTAGCACAGCAA 58.823 36.000 0.00 0.00 0.00 3.91
2118 2216 2.747855 GCCAAAGGAGAGCCACGG 60.748 66.667 0.00 0.00 36.29 4.94
2464 2565 4.095782 GCGTTCATAGGATGTGGCTTTTAA 59.904 41.667 0.00 0.00 0.00 1.52
2672 2788 4.074970 TGGAGATTTTCTTGCCAGAGAAC 58.925 43.478 0.00 0.00 35.50 3.01
2709 2825 8.041323 GGGTATTCCATATAACTATCACACAGG 58.959 40.741 0.00 0.00 35.00 4.00
2731 2847 3.643199 TGATAAATGCTGCAGTGGGTA 57.357 42.857 16.64 3.77 0.00 3.69
2808 2933 5.962433 AGGTGATGAAGATGCTTTGATTTG 58.038 37.500 0.00 0.00 0.00 2.32
2941 3066 9.739276 AGTCATATACTTCATTTGTCTTGGAAA 57.261 29.630 0.00 0.00 33.35 3.13
3144 3275 4.769488 TCTTCTGTCACATTCTCTAGCTGT 59.231 41.667 0.00 0.00 0.00 4.40
3189 3320 2.969950 TCGGAGTTCCTTCTTCTTTCCA 59.030 45.455 0.00 0.00 0.00 3.53
3372 3504 7.339466 AGCCATTGTAGGTTTTTACAATAGGAG 59.661 37.037 19.67 8.21 46.93 3.69
3494 3626 9.244292 GAAATATTACCTCTTTTCCTTGTTCCT 57.756 33.333 0.00 0.00 0.00 3.36
3514 3646 5.356470 GCAACTTCTCAAGCTGAGGAAATAT 59.644 40.000 11.63 0.00 44.39 1.28
3595 3730 1.421410 GAGCGTGCCATTCTACCGTG 61.421 60.000 0.00 0.00 0.00 4.94
3608 3743 1.725641 TGTAGGAAATGCTGAGCGTG 58.274 50.000 0.00 0.00 0.00 5.34
3612 3747 4.946157 ACCTTCAATGTAGGAAATGCTGAG 59.054 41.667 12.99 0.00 36.58 3.35
3749 3884 2.093021 TGTCCCGATGATGCTTTGATCA 60.093 45.455 0.00 0.00 36.78 2.92
3750 3885 2.564771 TGTCCCGATGATGCTTTGATC 58.435 47.619 0.00 0.00 0.00 2.92
3765 3900 2.498078 TGGACAAACCTTTTGTTGTCCC 59.502 45.455 25.16 12.79 45.12 4.46
3950 4085 4.686091 CACTCATCGCTTGTCTCAAACTAA 59.314 41.667 0.00 0.00 0.00 2.24
3959 4094 0.376152 CATGGCACTCATCGCTTGTC 59.624 55.000 0.00 0.00 32.92 3.18
3972 4107 1.851304 GGTTCCATTTCTCCATGGCA 58.149 50.000 6.96 0.00 43.31 4.92
3992 4127 0.036388 TGCCAGAGGGAAATCGTGAC 60.036 55.000 0.00 0.00 35.59 3.67
4042 4177 3.996150 GCATGCACATAGCTTGGTTAT 57.004 42.857 14.21 0.00 45.66 1.89
4141 4276 9.703892 CATAATGTTTAGACTCCTCAAGGATAG 57.296 37.037 0.00 0.00 44.46 2.08
4175 4310 1.732259 CTGCGTATCCAACCAGTTGTC 59.268 52.381 9.53 0.00 38.85 3.18
4370 4505 1.748122 GATGGCTGTCCCTGCTGTG 60.748 63.158 0.00 0.00 0.00 3.66
4371 4506 2.194388 CTGATGGCTGTCCCTGCTGT 62.194 60.000 0.00 0.00 0.00 4.40
4396 4531 0.244721 GGTGAGCCTTGAACAATGGC 59.755 55.000 15.05 15.05 46.42 4.40
4398 4533 1.270550 GGTGGTGAGCCTTGAACAATG 59.729 52.381 0.00 0.00 35.27 2.82
4401 4536 0.179020 CAGGTGGTGAGCCTTGAACA 60.179 55.000 0.00 0.00 33.31 3.18
4458 4593 2.981914 ATCCGTCGCACCCCCGTATA 62.982 60.000 0.00 0.00 0.00 1.47
4464 4599 1.078988 TGTTAATCCGTCGCACCCC 60.079 57.895 0.00 0.00 0.00 4.95
4467 4602 1.087771 CCCCTGTTAATCCGTCGCAC 61.088 60.000 0.00 0.00 0.00 5.34
4487 4622 1.153147 GACGGGGGAAGATCAAGGC 60.153 63.158 0.00 0.00 0.00 4.35
4503 4638 1.352156 CGCTTACGTGCTTGAGGGAC 61.352 60.000 0.00 0.00 33.53 4.46
4516 4651 1.202268 ACTGCACCGATAGACGCTTAC 60.202 52.381 0.00 0.00 41.07 2.34
4518 4653 0.458543 CACTGCACCGATAGACGCTT 60.459 55.000 0.00 0.00 41.07 4.68
4524 4659 0.249120 TCAACCCACTGCACCGATAG 59.751 55.000 0.00 0.00 0.00 2.08
4534 4669 0.399949 TCCACTGACCTCAACCCACT 60.400 55.000 0.00 0.00 0.00 4.00
4605 4740 1.343075 GGTAGGGATGACAGGGTCTCA 60.343 57.143 0.00 0.00 33.15 3.27
4641 4776 2.625790 GAGCATTCTGAGAGACGGGTAT 59.374 50.000 0.00 0.00 0.00 2.73
4680 4815 0.761802 CAGGGAGCCTCTTCATACCC 59.238 60.000 0.00 0.00 37.79 3.69
4772 4907 7.144000 GCTTAAATGCAGCAGCTAAAATAGAT 58.856 34.615 0.00 0.00 42.74 1.98
4794 4929 6.628844 GCAAGGGATGTCTGAATTTATTGCTT 60.629 38.462 0.00 0.00 37.07 3.91
4928 5067 6.748132 ACATGGAAAAATTGAGACACGATTT 58.252 32.000 0.00 0.00 42.43 2.17
4941 5080 5.461737 CGTGTTTGCTGTAACATGGAAAAAT 59.538 36.000 0.00 0.00 39.98 1.82
4953 5092 1.010574 GCAACGCGTGTTTGCTGTA 60.011 52.632 23.36 0.00 35.72 2.74
5130 5269 5.992729 TGCCACGAGAAAATTTGTAAGTAC 58.007 37.500 0.00 0.00 0.00 2.73
5206 5345 4.461081 ACAGCTCAACTAACCTCTACAGAG 59.539 45.833 0.00 0.00 41.71 3.35
5265 5404 1.077644 ATCTCCTGCTGCTGCTTGG 60.078 57.895 17.00 17.18 40.48 3.61
5320 5459 1.896660 ACCATGCACAACCGACACC 60.897 57.895 0.00 0.00 0.00 4.16
5375 5514 5.809001 TCCAACTTTATTCAGACATGAGCT 58.191 37.500 0.00 0.00 36.61 4.09
5376 5515 5.645497 ACTCCAACTTTATTCAGACATGAGC 59.355 40.000 0.00 0.00 36.61 4.26
5387 5527 6.879458 AGAGCGTGAAATACTCCAACTTTATT 59.121 34.615 0.00 0.00 0.00 1.40
5406 5546 2.565841 GGAATTCTTGCCATAGAGCGT 58.434 47.619 5.23 0.00 34.65 5.07
5411 5551 3.063997 GTGTCACGGAATTCTTGCCATAG 59.936 47.826 5.23 0.00 0.00 2.23
5466 5624 8.261229 CGTATAACGTCATCGCAAACTTATTTA 58.739 33.333 0.00 0.00 41.18 1.40
5530 5692 0.250338 AACGTTCCAGGCCAGTTCTC 60.250 55.000 5.01 0.00 0.00 2.87
5638 5811 0.458669 CAATTGCAAGGCTAGCTGGG 59.541 55.000 15.72 5.21 0.00 4.45
5748 5939 6.449635 TTGCCTACTTTCATCGCAATTAAT 57.550 33.333 0.00 0.00 34.68 1.40
5814 6012 6.327934 GCTGTGATGAAATTGAGCAAATACT 58.672 36.000 0.00 0.00 0.00 2.12
5834 6033 7.895759 TGCAGAAAAGAAAATAATTAGGCTGT 58.104 30.769 0.00 0.00 0.00 4.40
5862 6061 1.134007 TGACATGATGGATGCCTGGAC 60.134 52.381 0.00 0.00 35.15 4.02
5865 6064 2.858745 TGATGACATGATGGATGCCTG 58.141 47.619 0.00 0.00 35.15 4.85
5866 6065 3.330998 AGATGATGACATGATGGATGCCT 59.669 43.478 0.00 0.00 36.82 4.75
5962 6170 3.132289 AGAGTTCGACAAAAGACCAGTGA 59.868 43.478 0.00 0.00 0.00 3.41
5963 6171 3.246226 CAGAGTTCGACAAAAGACCAGTG 59.754 47.826 0.00 0.00 0.00 3.66
5964 6172 3.458189 CAGAGTTCGACAAAAGACCAGT 58.542 45.455 0.00 0.00 0.00 4.00
5965 6173 2.802816 CCAGAGTTCGACAAAAGACCAG 59.197 50.000 0.00 0.00 0.00 4.00
5966 6174 2.833794 CCAGAGTTCGACAAAAGACCA 58.166 47.619 0.00 0.00 0.00 4.02
5967 6175 1.531578 GCCAGAGTTCGACAAAAGACC 59.468 52.381 0.00 0.00 0.00 3.85
5968 6176 2.032808 GTGCCAGAGTTCGACAAAAGAC 60.033 50.000 0.00 0.00 0.00 3.01
5969 6177 2.210116 GTGCCAGAGTTCGACAAAAGA 58.790 47.619 0.00 0.00 0.00 2.52
5970 6178 1.070577 CGTGCCAGAGTTCGACAAAAG 60.071 52.381 0.00 0.00 0.00 2.27
5971 6179 0.934496 CGTGCCAGAGTTCGACAAAA 59.066 50.000 0.00 0.00 0.00 2.44
5972 6180 1.495584 GCGTGCCAGAGTTCGACAAA 61.496 55.000 0.00 0.00 0.00 2.83
5973 6181 1.954146 GCGTGCCAGAGTTCGACAA 60.954 57.895 0.00 0.00 0.00 3.18
5999 6219 2.591753 CCAGCCATGGGTCGTCAT 59.408 61.111 15.07 0.00 43.54 3.06
6163 6385 3.682858 CCACCACACTTCATAACCTTACG 59.317 47.826 0.00 0.00 0.00 3.18
6173 6395 0.396417 CCCAAACCCACCACACTTCA 60.396 55.000 0.00 0.00 0.00 3.02
6174 6396 0.106419 TCCCAAACCCACCACACTTC 60.106 55.000 0.00 0.00 0.00 3.01
6177 6399 1.419381 ATTTCCCAAACCCACCACAC 58.581 50.000 0.00 0.00 0.00 3.82
6178 6400 2.182516 AATTTCCCAAACCCACCACA 57.817 45.000 0.00 0.00 0.00 4.17
6179 6401 2.703536 AGAAATTTCCCAAACCCACCAC 59.296 45.455 14.61 0.00 0.00 4.16
6180 6402 2.703007 CAGAAATTTCCCAAACCCACCA 59.297 45.455 14.61 0.00 0.00 4.17
6182 6404 2.969262 TCCAGAAATTTCCCAAACCCAC 59.031 45.455 14.61 0.00 0.00 4.61
6183 6405 3.336509 TCCAGAAATTTCCCAAACCCA 57.663 42.857 14.61 0.00 0.00 4.51
6184 6406 5.483937 AGTTATCCAGAAATTTCCCAAACCC 59.516 40.000 14.61 0.00 0.00 4.11
6185 6407 6.437477 AGAGTTATCCAGAAATTTCCCAAACC 59.563 38.462 14.61 7.03 0.00 3.27
6186 6408 7.394641 AGAGAGTTATCCAGAAATTTCCCAAAC 59.605 37.037 14.61 11.55 0.00 2.93
6187 6409 7.470192 AGAGAGTTATCCAGAAATTTCCCAAA 58.530 34.615 14.61 0.00 0.00 3.28
6188 6410 7.032598 AGAGAGTTATCCAGAAATTTCCCAA 57.967 36.000 14.61 0.76 0.00 4.12
6189 6411 6.642733 AGAGAGTTATCCAGAAATTTCCCA 57.357 37.500 14.61 0.00 0.00 4.37
6190 6412 6.544197 GGAAGAGAGTTATCCAGAAATTTCCC 59.456 42.308 14.61 0.00 33.30 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.