Multiple sequence alignment - TraesCS3B01G587100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G587100 chr3B 100.000 2393 0 0 1 2393 813879651 813882043 0.000000e+00 4420.0
1 TraesCS3B01G587100 chr3B 100.000 33 0 0 1 33 254635878 254635846 7.140000e-06 62.1
2 TraesCS3B01G587100 chr3A 88.676 1563 118 20 847 2393 737171325 737172844 0.000000e+00 1851.0
3 TraesCS3B01G587100 chr3A 83.684 999 119 23 561 1550 737140292 737141255 0.000000e+00 902.0
4 TraesCS3B01G587100 chr3A 100.000 33 0 0 1 33 645875127 645875159 7.140000e-06 62.1
5 TraesCS3B01G587100 chrUn 86.889 900 73 19 561 1440 46178157 46179031 0.000000e+00 966.0
6 TraesCS3B01G587100 chrUn 80.000 1125 131 36 726 1824 46160839 46161895 0.000000e+00 745.0
7 TraesCS3B01G587100 chr7A 91.667 144 8 3 26 169 90670311 90670172 1.880000e-46 196.0
8 TraesCS3B01G587100 chr7A 100.000 35 0 0 1 35 702670139 702670105 5.520000e-07 65.8
9 TraesCS3B01G587100 chr2D 90.909 143 9 3 27 169 135461207 135461069 3.140000e-44 189.0
10 TraesCS3B01G587100 chr7D 88.966 145 11 4 26 169 17241682 17241822 8.790000e-40 174.0
11 TraesCS3B01G587100 chr7D 97.872 94 2 0 164 257 74570134 74570227 1.900000e-36 163.0
12 TraesCS3B01G587100 chr7D 100.000 33 0 0 1 33 179816775 179816743 7.140000e-06 62.1
13 TraesCS3B01G587100 chr1D 88.889 144 12 3 26 169 417243725 417243586 8.790000e-40 174.0
14 TraesCS3B01G587100 chr1D 87.755 147 14 3 23 169 396329554 396329696 4.090000e-38 169.0
15 TraesCS3B01G587100 chr1D 97.917 96 2 0 164 259 486821312 486821407 1.470000e-37 167.0
16 TraesCS3B01G587100 chr5D 87.417 151 13 5 20 169 549899084 549899229 4.090000e-38 169.0
17 TraesCS3B01G587100 chr4D 88.194 144 13 3 26 169 38251663 38251802 4.090000e-38 169.0
18 TraesCS3B01G587100 chr4D 97.872 94 2 0 164 257 505301106 505301199 1.900000e-36 163.0
19 TraesCS3B01G587100 chr1B 88.194 144 13 3 25 168 550310434 550310295 4.090000e-38 169.0
20 TraesCS3B01G587100 chr7B 87.755 147 12 5 23 169 435639063 435639203 1.470000e-37 167.0
21 TraesCS3B01G587100 chr6D 97.872 94 2 0 164 257 446734372 446734279 1.900000e-36 163.0
22 TraesCS3B01G587100 chr3D 97.872 94 2 0 164 257 540946874 540946967 1.900000e-36 163.0
23 TraesCS3B01G587100 chr6B 97.849 93 2 0 164 256 165303059 165302967 6.850000e-36 161.0
24 TraesCS3B01G587100 chr5A 97.849 93 2 0 164 256 533936944 533937036 6.850000e-36 161.0
25 TraesCS3B01G587100 chr5A 96.875 96 3 0 164 259 632655839 632655744 6.850000e-36 161.0
26 TraesCS3B01G587100 chr2B 96.842 95 3 0 164 258 760298577 760298483 2.460000e-35 159.0
27 TraesCS3B01G587100 chr2B 100.000 33 0 0 1 33 539303960 539303928 7.140000e-06 62.1
28 TraesCS3B01G587100 chr2B 100.000 33 0 0 1 33 569619394 569619426 7.140000e-06 62.1
29 TraesCS3B01G587100 chr6A 100.000 33 0 0 1 33 483773477 483773445 7.140000e-06 62.1
30 TraesCS3B01G587100 chr6A 100.000 33 0 0 1 33 589693477 589693445 7.140000e-06 62.1
31 TraesCS3B01G587100 chr6A 97.143 35 1 0 1 35 230562113 230562079 2.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G587100 chr3B 813879651 813882043 2392 False 4420 4420 100.000 1 2393 1 chr3B.!!$F1 2392
1 TraesCS3B01G587100 chr3A 737171325 737172844 1519 False 1851 1851 88.676 847 2393 1 chr3A.!!$F3 1546
2 TraesCS3B01G587100 chr3A 737140292 737141255 963 False 902 902 83.684 561 1550 1 chr3A.!!$F2 989
3 TraesCS3B01G587100 chrUn 46178157 46179031 874 False 966 966 86.889 561 1440 1 chrUn.!!$F2 879
4 TraesCS3B01G587100 chrUn 46160839 46161895 1056 False 745 745 80.000 726 1824 1 chrUn.!!$F1 1098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 249 0.029681 AGCCCACATGAGGAGGGTAT 60.03 55.0 11.19 1.9 44.69 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2023 0.179009 CCGATCCCTTGACCATGCAT 60.179 55.0 0.0 0.0 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.663202 ATCCGCCGGTTTTGACAC 58.337 55.556 1.63 0.00 0.00 3.67
18 19 1.969589 ATCCGCCGGTTTTGACACC 60.970 57.895 1.63 0.00 0.00 4.16
26 27 1.949465 GGTTTTGACACCGACACTCT 58.051 50.000 0.00 0.00 0.00 3.24
27 28 1.865340 GGTTTTGACACCGACACTCTC 59.135 52.381 0.00 0.00 0.00 3.20
28 29 1.865340 GTTTTGACACCGACACTCTCC 59.135 52.381 0.00 0.00 0.00 3.71
29 30 0.391597 TTTGACACCGACACTCTCCC 59.608 55.000 0.00 0.00 0.00 4.30
30 31 0.469331 TTGACACCGACACTCTCCCT 60.469 55.000 0.00 0.00 0.00 4.20
31 32 0.894184 TGACACCGACACTCTCCCTC 60.894 60.000 0.00 0.00 0.00 4.30
32 33 0.894184 GACACCGACACTCTCCCTCA 60.894 60.000 0.00 0.00 0.00 3.86
33 34 1.179814 ACACCGACACTCTCCCTCAC 61.180 60.000 0.00 0.00 0.00 3.51
34 35 0.896019 CACCGACACTCTCCCTCACT 60.896 60.000 0.00 0.00 0.00 3.41
35 36 0.896019 ACCGACACTCTCCCTCACTG 60.896 60.000 0.00 0.00 0.00 3.66
36 37 0.609406 CCGACACTCTCCCTCACTGA 60.609 60.000 0.00 0.00 0.00 3.41
37 38 1.468985 CGACACTCTCCCTCACTGAT 58.531 55.000 0.00 0.00 0.00 2.90
38 39 1.821753 CGACACTCTCCCTCACTGATT 59.178 52.381 0.00 0.00 0.00 2.57
39 40 2.232452 CGACACTCTCCCTCACTGATTT 59.768 50.000 0.00 0.00 0.00 2.17
40 41 3.306364 CGACACTCTCCCTCACTGATTTT 60.306 47.826 0.00 0.00 0.00 1.82
41 42 4.646572 GACACTCTCCCTCACTGATTTTT 58.353 43.478 0.00 0.00 0.00 1.94
57 58 1.231221 TTTTTGACCGTCGGTGATGG 58.769 50.000 24.45 3.52 43.80 3.51
62 63 3.604629 CCGTCGGTGATGGTCTCT 58.395 61.111 2.08 0.00 34.27 3.10
63 64 1.433879 CCGTCGGTGATGGTCTCTC 59.566 63.158 2.08 0.00 34.27 3.20
64 65 1.032657 CCGTCGGTGATGGTCTCTCT 61.033 60.000 2.08 0.00 34.27 3.10
65 66 0.811915 CGTCGGTGATGGTCTCTCTT 59.188 55.000 0.00 0.00 0.00 2.85
66 67 1.202200 CGTCGGTGATGGTCTCTCTTC 60.202 57.143 0.00 0.00 0.00 2.87
67 68 2.096248 GTCGGTGATGGTCTCTCTTCT 58.904 52.381 0.00 0.00 0.00 2.85
68 69 2.098443 GTCGGTGATGGTCTCTCTTCTC 59.902 54.545 0.00 0.00 0.00 2.87
69 70 2.025793 TCGGTGATGGTCTCTCTTCTCT 60.026 50.000 0.00 0.00 0.00 3.10
70 71 2.757868 CGGTGATGGTCTCTCTTCTCTT 59.242 50.000 0.00 0.00 0.00 2.85
71 72 3.181491 CGGTGATGGTCTCTCTTCTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
72 73 3.132111 GGTGATGGTCTCTCTTCTCTTCC 59.868 52.174 0.00 0.00 0.00 3.46
73 74 4.023291 GTGATGGTCTCTCTTCTCTTCCT 58.977 47.826 0.00 0.00 0.00 3.36
74 75 4.466015 GTGATGGTCTCTCTTCTCTTCCTT 59.534 45.833 0.00 0.00 0.00 3.36
75 76 4.709397 TGATGGTCTCTCTTCTCTTCCTTC 59.291 45.833 0.00 0.00 0.00 3.46
76 77 3.436243 TGGTCTCTCTTCTCTTCCTTCC 58.564 50.000 0.00 0.00 0.00 3.46
77 78 2.764010 GGTCTCTCTTCTCTTCCTTCCC 59.236 54.545 0.00 0.00 0.00 3.97
78 79 2.425668 GTCTCTCTTCTCTTCCTTCCCG 59.574 54.545 0.00 0.00 0.00 5.14
79 80 2.041891 TCTCTCTTCTCTTCCTTCCCGT 59.958 50.000 0.00 0.00 0.00 5.28
80 81 2.165437 CTCTCTTCTCTTCCTTCCCGTG 59.835 54.545 0.00 0.00 0.00 4.94
81 82 0.608640 TCTTCTCTTCCTTCCCGTGC 59.391 55.000 0.00 0.00 0.00 5.34
82 83 0.321671 CTTCTCTTCCTTCCCGTGCA 59.678 55.000 0.00 0.00 0.00 4.57
83 84 0.984230 TTCTCTTCCTTCCCGTGCAT 59.016 50.000 0.00 0.00 0.00 3.96
84 85 0.984230 TCTCTTCCTTCCCGTGCATT 59.016 50.000 0.00 0.00 0.00 3.56
85 86 2.184533 TCTCTTCCTTCCCGTGCATTA 58.815 47.619 0.00 0.00 0.00 1.90
86 87 2.093658 TCTCTTCCTTCCCGTGCATTAC 60.094 50.000 0.00 0.00 0.00 1.89
87 88 1.065709 TCTTCCTTCCCGTGCATTACC 60.066 52.381 0.00 0.00 0.00 2.85
88 89 0.693622 TTCCTTCCCGTGCATTACCA 59.306 50.000 0.00 0.00 0.00 3.25
89 90 0.693622 TCCTTCCCGTGCATTACCAA 59.306 50.000 0.00 0.00 0.00 3.67
90 91 1.074084 TCCTTCCCGTGCATTACCAAA 59.926 47.619 0.00 0.00 0.00 3.28
91 92 1.889829 CCTTCCCGTGCATTACCAAAA 59.110 47.619 0.00 0.00 0.00 2.44
92 93 2.094752 CCTTCCCGTGCATTACCAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
93 94 1.540267 TCCCGTGCATTACCAAAAGG 58.460 50.000 0.00 0.00 0.00 3.11
94 95 1.202952 TCCCGTGCATTACCAAAAGGT 60.203 47.619 0.00 0.00 0.00 3.50
95 96 1.201414 CCCGTGCATTACCAAAAGGTC 59.799 52.381 0.00 0.00 0.00 3.85
96 97 2.159382 CCGTGCATTACCAAAAGGTCT 58.841 47.619 0.00 0.00 0.00 3.85
97 98 3.340034 CCGTGCATTACCAAAAGGTCTA 58.660 45.455 0.00 0.00 0.00 2.59
98 99 3.945285 CCGTGCATTACCAAAAGGTCTAT 59.055 43.478 0.00 0.00 0.00 1.98
99 100 4.035208 CCGTGCATTACCAAAAGGTCTATC 59.965 45.833 0.00 0.00 0.00 2.08
100 101 4.634004 CGTGCATTACCAAAAGGTCTATCA 59.366 41.667 0.00 0.00 0.00 2.15
101 102 5.447279 CGTGCATTACCAAAAGGTCTATCAC 60.447 44.000 0.00 0.00 0.00 3.06
115 116 6.287589 GGTCTATCACCAGAAAGAAGAAGA 57.712 41.667 0.00 0.00 45.98 2.87
116 117 6.702329 GGTCTATCACCAGAAAGAAGAAGAA 58.298 40.000 0.00 0.00 45.98 2.52
117 118 6.816140 GGTCTATCACCAGAAAGAAGAAGAAG 59.184 42.308 0.00 0.00 45.98 2.85
118 119 7.310113 GGTCTATCACCAGAAAGAAGAAGAAGA 60.310 40.741 0.00 0.00 45.98 2.87
119 120 8.091449 GTCTATCACCAGAAAGAAGAAGAAGAA 58.909 37.037 0.00 0.00 0.00 2.52
120 121 8.310382 TCTATCACCAGAAAGAAGAAGAAGAAG 58.690 37.037 0.00 0.00 0.00 2.85
121 122 6.485830 TCACCAGAAAGAAGAAGAAGAAGA 57.514 37.500 0.00 0.00 0.00 2.87
122 123 6.520272 TCACCAGAAAGAAGAAGAAGAAGAG 58.480 40.000 0.00 0.00 0.00 2.85
123 124 5.179182 CACCAGAAAGAAGAAGAAGAAGAGC 59.821 44.000 0.00 0.00 0.00 4.09
124 125 4.388469 CCAGAAAGAAGAAGAAGAAGAGCG 59.612 45.833 0.00 0.00 0.00 5.03
125 126 5.226396 CAGAAAGAAGAAGAAGAAGAGCGA 58.774 41.667 0.00 0.00 0.00 4.93
126 127 5.118510 CAGAAAGAAGAAGAAGAAGAGCGAC 59.881 44.000 0.00 0.00 0.00 5.19
127 128 3.586100 AGAAGAAGAAGAAGAGCGACC 57.414 47.619 0.00 0.00 0.00 4.79
128 129 3.161866 AGAAGAAGAAGAAGAGCGACCT 58.838 45.455 0.00 0.00 0.00 3.85
129 130 3.192633 AGAAGAAGAAGAAGAGCGACCTC 59.807 47.826 0.00 0.00 38.42 3.85
130 131 1.822371 AGAAGAAGAAGAGCGACCTCC 59.178 52.381 0.00 0.00 38.96 4.30
131 132 1.546476 GAAGAAGAAGAGCGACCTCCA 59.454 52.381 0.00 0.00 38.96 3.86
132 133 0.892063 AGAAGAAGAGCGACCTCCAC 59.108 55.000 0.00 0.00 38.96 4.02
133 134 0.603569 GAAGAAGAGCGACCTCCACA 59.396 55.000 0.00 0.00 38.96 4.17
134 135 1.000955 GAAGAAGAGCGACCTCCACAA 59.999 52.381 0.00 0.00 38.96 3.33
135 136 0.318762 AGAAGAGCGACCTCCACAAC 59.681 55.000 0.00 0.00 38.96 3.32
136 137 0.033504 GAAGAGCGACCTCCACAACA 59.966 55.000 0.00 0.00 38.96 3.33
137 138 0.468226 AAGAGCGACCTCCACAACAA 59.532 50.000 0.00 0.00 38.96 2.83
138 139 0.249911 AGAGCGACCTCCACAACAAC 60.250 55.000 0.00 0.00 38.96 3.32
139 140 0.531974 GAGCGACCTCCACAACAACA 60.532 55.000 0.00 0.00 31.68 3.33
140 141 0.532862 AGCGACCTCCACAACAACAG 60.533 55.000 0.00 0.00 0.00 3.16
141 142 0.814010 GCGACCTCCACAACAACAGT 60.814 55.000 0.00 0.00 0.00 3.55
142 143 1.217882 CGACCTCCACAACAACAGTC 58.782 55.000 0.00 0.00 0.00 3.51
143 144 1.217882 GACCTCCACAACAACAGTCG 58.782 55.000 0.00 0.00 0.00 4.18
144 145 0.179056 ACCTCCACAACAACAGTCGG 60.179 55.000 0.00 0.00 0.00 4.79
145 146 0.884704 CCTCCACAACAACAGTCGGG 60.885 60.000 0.00 0.00 0.00 5.14
146 147 0.105964 CTCCACAACAACAGTCGGGA 59.894 55.000 0.00 0.00 0.00 5.14
147 148 0.762418 TCCACAACAACAGTCGGGAT 59.238 50.000 0.00 0.00 0.00 3.85
148 149 1.142060 TCCACAACAACAGTCGGGATT 59.858 47.619 0.00 0.00 0.00 3.01
149 150 1.535462 CCACAACAACAGTCGGGATTC 59.465 52.381 0.00 0.00 0.00 2.52
150 151 2.494059 CACAACAACAGTCGGGATTCT 58.506 47.619 0.00 0.00 0.00 2.40
151 152 2.878406 CACAACAACAGTCGGGATTCTT 59.122 45.455 0.00 0.00 0.00 2.52
152 153 2.878406 ACAACAACAGTCGGGATTCTTG 59.122 45.455 0.00 0.00 0.00 3.02
153 154 2.878406 CAACAACAGTCGGGATTCTTGT 59.122 45.455 0.00 0.00 0.00 3.16
154 155 3.208747 ACAACAGTCGGGATTCTTGTT 57.791 42.857 0.00 0.00 0.00 2.83
155 156 3.139077 ACAACAGTCGGGATTCTTGTTC 58.861 45.455 0.00 0.00 0.00 3.18
156 157 3.181454 ACAACAGTCGGGATTCTTGTTCT 60.181 43.478 0.00 0.00 0.00 3.01
157 158 3.320673 ACAGTCGGGATTCTTGTTCTC 57.679 47.619 0.00 0.00 0.00 2.87
158 159 2.900546 ACAGTCGGGATTCTTGTTCTCT 59.099 45.455 0.00 0.00 0.00 3.10
159 160 3.056465 ACAGTCGGGATTCTTGTTCTCTC 60.056 47.826 0.00 0.00 0.00 3.20
160 161 3.056536 CAGTCGGGATTCTTGTTCTCTCA 60.057 47.826 0.00 0.00 0.00 3.27
161 162 3.772025 AGTCGGGATTCTTGTTCTCTCAT 59.228 43.478 0.00 0.00 0.00 2.90
162 163 4.956700 AGTCGGGATTCTTGTTCTCTCATA 59.043 41.667 0.00 0.00 0.00 2.15
163 164 5.600484 AGTCGGGATTCTTGTTCTCTCATAT 59.400 40.000 0.00 0.00 0.00 1.78
164 165 6.778069 AGTCGGGATTCTTGTTCTCTCATATA 59.222 38.462 0.00 0.00 0.00 0.86
165 166 7.287927 AGTCGGGATTCTTGTTCTCTCATATAA 59.712 37.037 0.00 0.00 0.00 0.98
166 167 8.091449 GTCGGGATTCTTGTTCTCTCATATAAT 58.909 37.037 0.00 0.00 0.00 1.28
167 168 8.090831 TCGGGATTCTTGTTCTCTCATATAATG 58.909 37.037 0.00 0.00 0.00 1.90
168 169 7.332926 CGGGATTCTTGTTCTCTCATATAATGG 59.667 40.741 0.00 0.00 0.00 3.16
169 170 7.609532 GGGATTCTTGTTCTCTCATATAATGGG 59.390 40.741 0.00 0.00 0.00 4.00
170 171 8.160106 GGATTCTTGTTCTCTCATATAATGGGT 58.840 37.037 0.00 0.00 31.00 4.51
173 174 8.783660 TCTTGTTCTCTCATATAATGGGTAGT 57.216 34.615 0.00 0.00 31.00 2.73
174 175 8.642432 TCTTGTTCTCTCATATAATGGGTAGTG 58.358 37.037 0.00 0.00 31.00 2.74
175 176 7.303182 TGTTCTCTCATATAATGGGTAGTGG 57.697 40.000 0.00 0.00 31.00 4.00
176 177 6.270000 TGTTCTCTCATATAATGGGTAGTGGG 59.730 42.308 0.00 0.00 31.00 4.61
177 178 4.777896 TCTCTCATATAATGGGTAGTGGGC 59.222 45.833 0.00 0.00 31.00 5.36
178 179 4.763355 TCTCATATAATGGGTAGTGGGCT 58.237 43.478 0.00 0.00 31.00 5.19
179 180 5.162637 TCTCATATAATGGGTAGTGGGCTT 58.837 41.667 0.00 0.00 31.00 4.35
180 181 5.248477 TCTCATATAATGGGTAGTGGGCTTC 59.752 44.000 0.00 0.00 31.00 3.86
181 182 5.162637 TCATATAATGGGTAGTGGGCTTCT 58.837 41.667 0.00 0.00 0.00 2.85
182 183 3.864789 ATAATGGGTAGTGGGCTTCTG 57.135 47.619 0.00 0.00 0.00 3.02
183 184 0.034089 AATGGGTAGTGGGCTTCTGC 60.034 55.000 0.00 0.00 38.76 4.26
184 185 1.207488 ATGGGTAGTGGGCTTCTGCA 61.207 55.000 0.00 0.00 41.91 4.41
185 186 1.377333 GGGTAGTGGGCTTCTGCAC 60.377 63.158 0.00 0.00 44.33 4.57
186 187 1.377333 GGTAGTGGGCTTCTGCACC 60.377 63.158 0.00 0.00 43.18 5.01
187 188 1.679898 GTAGTGGGCTTCTGCACCT 59.320 57.895 0.00 0.00 43.18 4.00
188 189 0.391793 GTAGTGGGCTTCTGCACCTC 60.392 60.000 0.00 0.00 43.18 3.85
189 190 0.545309 TAGTGGGCTTCTGCACCTCT 60.545 55.000 1.19 1.19 43.18 3.69
190 191 1.073897 GTGGGCTTCTGCACCTCTT 59.926 57.895 0.00 0.00 43.18 2.85
191 192 0.538287 GTGGGCTTCTGCACCTCTTT 60.538 55.000 0.00 0.00 43.18 2.52
192 193 0.538057 TGGGCTTCTGCACCTCTTTG 60.538 55.000 0.00 0.00 43.18 2.77
193 194 1.246737 GGGCTTCTGCACCTCTTTGG 61.247 60.000 0.00 0.00 41.91 3.28
194 195 1.246737 GGCTTCTGCACCTCTTTGGG 61.247 60.000 0.00 0.00 41.91 4.12
195 196 1.871126 GCTTCTGCACCTCTTTGGGC 61.871 60.000 0.00 0.00 41.11 5.36
196 197 0.251077 CTTCTGCACCTCTTTGGGCT 60.251 55.000 0.00 0.00 41.11 5.19
197 198 0.538057 TTCTGCACCTCTTTGGGCTG 60.538 55.000 0.00 0.00 41.11 4.85
198 199 2.598394 TGCACCTCTTTGGGCTGC 60.598 61.111 0.00 0.00 41.11 5.25
199 200 3.376918 GCACCTCTTTGGGCTGCC 61.377 66.667 11.05 11.05 41.11 4.85
200 201 2.437897 CACCTCTTTGGGCTGCCT 59.562 61.111 19.68 0.00 41.11 4.75
201 202 1.685224 CACCTCTTTGGGCTGCCTA 59.315 57.895 19.68 10.28 41.11 3.93
202 203 0.038166 CACCTCTTTGGGCTGCCTAA 59.962 55.000 19.68 16.80 41.11 2.69
203 204 0.777446 ACCTCTTTGGGCTGCCTAAA 59.223 50.000 25.69 25.69 41.11 1.85
204 205 1.146982 ACCTCTTTGGGCTGCCTAAAA 59.853 47.619 26.87 20.89 41.11 1.52
205 206 1.821136 CCTCTTTGGGCTGCCTAAAAG 59.179 52.381 26.87 27.06 33.75 2.27
206 207 1.821136 CTCTTTGGGCTGCCTAAAAGG 59.179 52.381 29.77 21.23 33.75 3.11
219 220 3.430453 CCTAAAAGGCCTCAAATGGTCA 58.570 45.455 5.23 0.00 33.35 4.02
220 221 4.026052 CCTAAAAGGCCTCAAATGGTCAT 58.974 43.478 5.23 0.00 33.35 3.06
221 222 4.098501 CCTAAAAGGCCTCAAATGGTCATC 59.901 45.833 5.23 0.00 33.35 2.92
222 223 3.463048 AAAGGCCTCAAATGGTCATCT 57.537 42.857 5.23 0.00 33.35 2.90
223 224 2.725221 AGGCCTCAAATGGTCATCTC 57.275 50.000 0.00 0.00 33.35 2.75
224 225 1.213926 AGGCCTCAAATGGTCATCTCC 59.786 52.381 0.00 0.00 33.35 3.71
225 226 1.213926 GGCCTCAAATGGTCATCTCCT 59.786 52.381 0.00 0.00 0.00 3.69
226 227 2.570135 GCCTCAAATGGTCATCTCCTC 58.430 52.381 0.00 0.00 0.00 3.71
227 228 2.092753 GCCTCAAATGGTCATCTCCTCA 60.093 50.000 0.00 0.00 0.00 3.86
228 229 3.539604 CCTCAAATGGTCATCTCCTCAC 58.460 50.000 0.00 0.00 0.00 3.51
229 230 3.054875 CCTCAAATGGTCATCTCCTCACA 60.055 47.826 0.00 0.00 0.00 3.58
230 231 4.190001 CTCAAATGGTCATCTCCTCACAG 58.810 47.826 0.00 0.00 0.00 3.66
231 232 2.681848 CAAATGGTCATCTCCTCACAGC 59.318 50.000 0.00 0.00 0.00 4.40
232 233 0.835941 ATGGTCATCTCCTCACAGCC 59.164 55.000 0.00 0.00 0.00 4.85
233 234 1.267574 TGGTCATCTCCTCACAGCCC 61.268 60.000 0.00 0.00 0.00 5.19
234 235 1.267574 GGTCATCTCCTCACAGCCCA 61.268 60.000 0.00 0.00 0.00 5.36
235 236 0.107945 GTCATCTCCTCACAGCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
236 237 0.545071 TCATCTCCTCACAGCCCACA 60.545 55.000 0.00 0.00 0.00 4.17
237 238 0.545171 CATCTCCTCACAGCCCACAT 59.455 55.000 0.00 0.00 0.00 3.21
238 239 0.545171 ATCTCCTCACAGCCCACATG 59.455 55.000 0.00 0.00 0.00 3.21
239 240 0.545071 TCTCCTCACAGCCCACATGA 60.545 55.000 0.00 0.00 0.00 3.07
240 241 0.107800 CTCCTCACAGCCCACATGAG 60.108 60.000 0.00 0.00 39.70 2.90
241 242 4.631773 CTCACAGCCCACATGAGG 57.368 61.111 0.00 0.00 36.92 3.86
242 243 1.985614 CTCACAGCCCACATGAGGA 59.014 57.895 11.19 0.00 36.92 3.71
243 244 0.107800 CTCACAGCCCACATGAGGAG 60.108 60.000 11.19 2.17 36.92 3.69
244 245 1.077930 CACAGCCCACATGAGGAGG 60.078 63.158 11.19 2.24 0.00 4.30
245 246 2.304056 ACAGCCCACATGAGGAGGG 61.304 63.158 11.19 11.24 45.68 4.30
246 247 2.125912 AGCCCACATGAGGAGGGT 59.874 61.111 11.19 2.53 44.69 4.34
247 248 0.982852 CAGCCCACATGAGGAGGGTA 60.983 60.000 11.19 0.00 44.69 3.69
248 249 0.029681 AGCCCACATGAGGAGGGTAT 60.030 55.000 11.19 1.90 44.69 2.73
249 250 0.398318 GCCCACATGAGGAGGGTATC 59.602 60.000 11.19 0.00 44.69 2.24
268 269 2.047274 CGACAATCGGCACACCCT 60.047 61.111 0.00 0.00 36.00 4.34
269 270 1.216977 CGACAATCGGCACACCCTA 59.783 57.895 0.00 0.00 36.00 3.53
270 271 0.806102 CGACAATCGGCACACCCTAG 60.806 60.000 0.00 0.00 36.00 3.02
271 272 1.078426 ACAATCGGCACACCCTAGC 60.078 57.895 0.00 0.00 0.00 3.42
272 273 1.221840 CAATCGGCACACCCTAGCT 59.778 57.895 0.00 0.00 0.00 3.32
273 274 0.811616 CAATCGGCACACCCTAGCTC 60.812 60.000 0.00 0.00 0.00 4.09
274 275 1.264749 AATCGGCACACCCTAGCTCA 61.265 55.000 0.00 0.00 0.00 4.26
275 276 1.961180 ATCGGCACACCCTAGCTCAC 61.961 60.000 0.00 0.00 0.00 3.51
276 277 2.125512 GGCACACCCTAGCTCACG 60.126 66.667 0.00 0.00 0.00 4.35
277 278 2.657237 GCACACCCTAGCTCACGT 59.343 61.111 0.00 0.00 0.00 4.49
278 279 1.446272 GCACACCCTAGCTCACGTC 60.446 63.158 0.00 0.00 0.00 4.34
279 280 1.215647 CACACCCTAGCTCACGTCC 59.784 63.158 0.00 0.00 0.00 4.79
280 281 1.076906 ACACCCTAGCTCACGTCCT 59.923 57.895 0.00 0.00 0.00 3.85
281 282 0.966370 ACACCCTAGCTCACGTCCTC 60.966 60.000 0.00 0.00 0.00 3.71
282 283 1.380112 ACCCTAGCTCACGTCCTCC 60.380 63.158 0.00 0.00 0.00 4.30
283 284 2.482333 CCCTAGCTCACGTCCTCCG 61.482 68.421 0.00 0.00 44.03 4.63
284 285 2.482333 CCTAGCTCACGTCCTCCGG 61.482 68.421 0.00 0.00 42.24 5.14
285 286 1.749638 CTAGCTCACGTCCTCCGGT 60.750 63.158 0.00 0.00 42.24 5.28
286 287 1.303888 TAGCTCACGTCCTCCGGTT 60.304 57.895 0.00 0.00 42.24 4.44
287 288 0.896940 TAGCTCACGTCCTCCGGTTT 60.897 55.000 0.00 0.00 42.24 3.27
288 289 2.027625 GCTCACGTCCTCCGGTTTG 61.028 63.158 0.00 0.00 42.24 2.93
289 290 2.027625 CTCACGTCCTCCGGTTTGC 61.028 63.158 0.00 0.00 42.24 3.68
290 291 3.047877 CACGTCCTCCGGTTTGCC 61.048 66.667 0.00 0.00 42.24 4.52
291 292 3.552384 ACGTCCTCCGGTTTGCCA 61.552 61.111 0.00 0.00 42.24 4.92
292 293 2.742372 CGTCCTCCGGTTTGCCAG 60.742 66.667 0.00 0.00 34.09 4.85
293 294 3.056328 GTCCTCCGGTTTGCCAGC 61.056 66.667 0.00 0.00 34.09 4.85
294 295 4.344865 TCCTCCGGTTTGCCAGCC 62.345 66.667 0.00 0.00 34.09 4.85
300 301 3.670377 GGTTTGCCAGCCGTCCAC 61.670 66.667 0.00 0.00 34.09 4.02
301 302 2.594592 GTTTGCCAGCCGTCCACT 60.595 61.111 0.00 0.00 0.00 4.00
302 303 2.193536 GTTTGCCAGCCGTCCACTT 61.194 57.895 0.00 0.00 0.00 3.16
303 304 2.192861 TTTGCCAGCCGTCCACTTG 61.193 57.895 0.00 0.00 0.00 3.16
304 305 4.641645 TGCCAGCCGTCCACTTGG 62.642 66.667 0.00 0.00 0.00 3.61
310 311 2.046892 CCGTCCACTTGGCTGAGG 60.047 66.667 0.00 0.00 34.44 3.86
311 312 2.743718 CGTCCACTTGGCTGAGGT 59.256 61.111 0.00 0.00 34.44 3.85
312 313 1.374758 CGTCCACTTGGCTGAGGTC 60.375 63.158 0.00 0.00 34.44 3.85
313 314 1.374758 GTCCACTTGGCTGAGGTCG 60.375 63.158 0.00 0.00 34.44 4.79
314 315 2.743928 CCACTTGGCTGAGGTCGC 60.744 66.667 0.00 0.00 0.00 5.19
367 368 2.028484 GTGACGCCACTCCGAACA 59.972 61.111 0.00 0.00 40.10 3.18
368 369 2.022129 GTGACGCCACTCCGAACAG 61.022 63.158 0.00 0.00 40.10 3.16
369 370 2.432628 GACGCCACTCCGAACAGG 60.433 66.667 0.00 0.00 42.97 4.00
370 371 3.934391 GACGCCACTCCGAACAGGG 62.934 68.421 0.00 0.00 41.52 4.45
373 374 4.760047 CCACTCCGAACAGGGCCG 62.760 72.222 0.00 0.00 41.52 6.13
398 399 4.767255 GGAGCACGCAGTCCCCTG 62.767 72.222 0.00 0.00 41.61 4.45
399 400 4.008933 GAGCACGCAGTCCCCTGT 62.009 66.667 0.00 0.00 41.61 4.00
400 401 2.603473 AGCACGCAGTCCCCTGTA 60.603 61.111 0.00 0.00 41.61 2.74
401 402 2.125512 GCACGCAGTCCCCTGTAG 60.126 66.667 0.00 0.00 41.61 2.74
402 403 2.125512 CACGCAGTCCCCTGTAGC 60.126 66.667 0.00 0.00 41.61 3.58
403 404 2.603473 ACGCAGTCCCCTGTAGCA 60.603 61.111 0.00 0.00 29.74 3.49
404 405 2.185350 CGCAGTCCCCTGTAGCAG 59.815 66.667 0.00 0.00 41.02 4.24
405 406 2.351244 CGCAGTCCCCTGTAGCAGA 61.351 63.158 0.00 0.00 41.02 4.26
406 407 1.680522 CGCAGTCCCCTGTAGCAGAT 61.681 60.000 0.00 0.00 41.02 2.90
407 408 0.179062 GCAGTCCCCTGTAGCAGATG 60.179 60.000 0.00 0.00 41.02 2.90
408 409 0.179062 CAGTCCCCTGTAGCAGATGC 60.179 60.000 0.00 0.00 36.18 3.91
409 410 0.618680 AGTCCCCTGTAGCAGATGCA 60.619 55.000 7.68 0.00 45.16 3.96
410 411 0.179062 GTCCCCTGTAGCAGATGCAG 60.179 60.000 7.68 0.00 45.16 4.41
411 412 0.325577 TCCCCTGTAGCAGATGCAGA 60.326 55.000 5.19 0.00 43.81 4.26
412 413 0.106335 CCCCTGTAGCAGATGCAGAG 59.894 60.000 5.19 0.00 43.81 3.35
413 414 0.532417 CCCTGTAGCAGATGCAGAGC 60.532 60.000 5.19 0.00 43.81 4.09
414 415 0.177373 CCTGTAGCAGATGCAGAGCA 59.823 55.000 5.19 0.00 43.81 4.26
415 416 1.573026 CTGTAGCAGATGCAGAGCAG 58.427 55.000 7.68 5.73 43.81 4.24
416 417 0.461516 TGTAGCAGATGCAGAGCAGC 60.462 55.000 7.68 0.00 45.98 5.25
421 422 3.407657 GATGCAGAGCAGCGAAGG 58.592 61.111 0.00 0.00 43.65 3.46
422 423 2.821688 GATGCAGAGCAGCGAAGGC 61.822 63.158 0.00 0.00 43.65 4.35
441 442 4.722700 CCACCGCCACCTTCCCTG 62.723 72.222 0.00 0.00 0.00 4.45
442 443 4.722700 CACCGCCACCTTCCCTGG 62.723 72.222 0.00 0.00 0.00 4.45
503 504 4.845307 GGGGGAGGGAAGGGAGGG 62.845 77.778 0.00 0.00 0.00 4.30
504 505 4.845307 GGGGAGGGAAGGGAGGGG 62.845 77.778 0.00 0.00 0.00 4.79
505 506 4.845307 GGGAGGGAAGGGAGGGGG 62.845 77.778 0.00 0.00 0.00 5.40
524 525 4.506255 GGCAGCGGGGCTATGGTT 62.506 66.667 0.00 0.00 36.40 3.67
525 526 2.440247 GCAGCGGGGCTATGGTTT 60.440 61.111 0.00 0.00 36.40 3.27
526 527 2.052104 GCAGCGGGGCTATGGTTTT 61.052 57.895 0.00 0.00 36.40 2.43
527 528 1.809207 CAGCGGGGCTATGGTTTTG 59.191 57.895 0.00 0.00 36.40 2.44
528 529 0.679640 CAGCGGGGCTATGGTTTTGA 60.680 55.000 0.00 0.00 36.40 2.69
529 530 0.394352 AGCGGGGCTATGGTTTTGAG 60.394 55.000 0.00 0.00 36.99 3.02
530 531 2.004808 GCGGGGCTATGGTTTTGAGC 62.005 60.000 0.00 0.00 35.39 4.26
534 535 2.504920 GCTATGGTTTTGAGCCCCC 58.495 57.895 0.00 0.00 0.00 5.40
535 536 1.384222 GCTATGGTTTTGAGCCCCCG 61.384 60.000 0.00 0.00 0.00 5.73
536 537 0.254747 CTATGGTTTTGAGCCCCCGA 59.745 55.000 0.00 0.00 0.00 5.14
537 538 0.254747 TATGGTTTTGAGCCCCCGAG 59.745 55.000 0.00 0.00 0.00 4.63
538 539 1.789576 ATGGTTTTGAGCCCCCGAGT 61.790 55.000 0.00 0.00 0.00 4.18
539 540 1.674651 GGTTTTGAGCCCCCGAGTC 60.675 63.158 0.00 0.00 0.00 3.36
540 541 2.033194 GTTTTGAGCCCCCGAGTCG 61.033 63.158 5.29 5.29 0.00 4.18
541 542 3.894547 TTTTGAGCCCCCGAGTCGC 62.895 63.158 7.12 0.00 0.00 5.19
596 597 3.384467 CCGCCTTTGGATGGAAATGTAAT 59.616 43.478 0.00 0.00 0.00 1.89
646 647 7.675962 ATAACACAACAGCCGAAGTTAATTA 57.324 32.000 0.00 0.00 0.00 1.40
651 652 7.081349 CACAACAGCCGAAGTTAATTAATTCA 58.919 34.615 3.39 0.00 0.00 2.57
654 655 9.139174 CAACAGCCGAAGTTAATTAATTCAAAT 57.861 29.630 3.39 0.00 0.00 2.32
671 672 6.431198 TTCAAATACTTTCACGATTAGGGC 57.569 37.500 0.00 0.00 0.00 5.19
679 680 7.404671 ACTTTCACGATTAGGGCATATTTTT 57.595 32.000 0.00 0.00 0.00 1.94
759 763 4.194640 TCACGTAGGGAGTACTCACATAC 58.805 47.826 26.59 21.61 34.87 2.39
785 789 1.073964 CACATCCTGCACGTCTTCTG 58.926 55.000 0.00 0.00 0.00 3.02
793 797 1.007271 CACGTCTTCTGTCCACGCT 60.007 57.895 0.00 0.00 37.02 5.07
794 798 0.597637 CACGTCTTCTGTCCACGCTT 60.598 55.000 0.00 0.00 37.02 4.68
797 801 1.704070 GTCTTCTGTCCACGCTTCTC 58.296 55.000 0.00 0.00 0.00 2.87
839 843 3.428045 GGGCAAGATCAATCGGTCAAAAG 60.428 47.826 0.00 0.00 0.00 2.27
890 894 2.031012 CTTCTGCCACTCACGCCA 59.969 61.111 0.00 0.00 0.00 5.69
929 933 4.688419 CGGCGTTGCAACTGCCAG 62.688 66.667 38.97 31.91 43.69 4.85
930 934 3.595758 GGCGTTGCAACTGCCAGT 61.596 61.111 37.58 0.00 43.30 4.00
931 935 2.353839 GCGTTGCAACTGCCAGTG 60.354 61.111 26.09 10.63 41.18 3.66
932 936 2.353839 CGTTGCAACTGCCAGTGC 60.354 61.111 26.09 5.22 41.18 4.40
933 937 2.028043 GTTGCAACTGCCAGTGCC 59.972 61.111 22.36 3.16 41.18 5.01
934 938 2.441717 TTGCAACTGCCAGTGCCA 60.442 55.556 14.00 5.46 41.18 4.92
951 955 7.633553 GCCAGTGCCATCACATCATATATACTA 60.634 40.741 0.00 0.00 45.49 1.82
967 971 1.797025 ACTAAGCGTCCTTGTTCAGC 58.203 50.000 0.00 0.00 32.47 4.26
987 999 3.697045 AGCAGATGGAGTACACTGTACTC 59.303 47.826 29.99 29.99 42.28 2.59
988 1000 3.444034 GCAGATGGAGTACACTGTACTCA 59.556 47.826 34.75 25.61 44.18 3.41
989 1001 4.439426 GCAGATGGAGTACACTGTACTCAG 60.439 50.000 34.75 23.88 44.18 3.35
990 1002 3.697045 AGATGGAGTACACTGTACTCAGC 59.303 47.826 34.75 26.45 44.18 4.26
991 1003 2.871453 TGGAGTACACTGTACTCAGCA 58.129 47.619 34.75 26.22 44.18 4.41
1089 1113 3.248171 GCCGCAGACGACGATGAC 61.248 66.667 0.00 0.00 43.93 3.06
1275 1311 2.224621 CCTTGACAAGGTGATGGACAGT 60.225 50.000 23.92 0.00 43.95 3.55
1278 1314 1.072331 GACAAGGTGATGGACAGTGGT 59.928 52.381 0.00 0.00 0.00 4.16
1481 1523 0.233848 GTGCGGTTGTTAGTTGTCGG 59.766 55.000 0.00 0.00 0.00 4.79
1482 1524 0.104487 TGCGGTTGTTAGTTGTCGGA 59.896 50.000 0.00 0.00 0.00 4.55
1590 1646 5.883673 TGGTTTCTTTTGTTACACTGCTAGT 59.116 36.000 0.00 0.00 0.00 2.57
1620 1678 6.230472 CCGTGTTCCTCCATGAATATATGAA 58.770 40.000 0.00 0.00 0.00 2.57
1679 1737 5.496556 CTCCATCTCATCTAGGACGATACT 58.503 45.833 0.00 0.00 0.00 2.12
1701 1759 9.815306 ATACTCTGGCTCATAAGATAGTCTTAA 57.185 33.333 3.77 0.00 41.72 1.85
1702 1760 8.540507 ACTCTGGCTCATAAGATAGTCTTAAA 57.459 34.615 3.77 0.00 41.72 1.52
1703 1761 8.637986 ACTCTGGCTCATAAGATAGTCTTAAAG 58.362 37.037 3.77 6.02 41.72 1.85
1704 1762 8.768501 TCTGGCTCATAAGATAGTCTTAAAGA 57.231 34.615 12.75 9.26 41.72 2.52
1705 1763 9.373450 TCTGGCTCATAAGATAGTCTTAAAGAT 57.627 33.333 12.75 0.00 41.72 2.40
1803 1862 8.314751 AGTCTTGTCATTAGTAACTAACATGCT 58.685 33.333 0.00 0.00 0.00 3.79
1831 1890 8.986929 AATATGCTGTTAGAGATAAGCCTTTT 57.013 30.769 0.00 0.00 34.70 2.27
1837 1896 7.766738 GCTGTTAGAGATAAGCCTTTTTCTACT 59.233 37.037 0.00 0.00 0.00 2.57
1859 1918 0.753262 CTCTATCCACCCCCTCAACG 59.247 60.000 0.00 0.00 0.00 4.10
1860 1919 1.146263 CTATCCACCCCCTCAACGC 59.854 63.158 0.00 0.00 0.00 4.84
1866 1925 0.251916 CACCCCCTCAACGCTTATCA 59.748 55.000 0.00 0.00 0.00 2.15
1871 1930 4.020485 ACCCCCTCAACGCTTATCATATAC 60.020 45.833 0.00 0.00 0.00 1.47
1872 1931 4.020573 CCCCCTCAACGCTTATCATATACA 60.021 45.833 0.00 0.00 0.00 2.29
1893 1952 4.019860 ACATGGCACTCTTAAGATGTCACT 60.020 41.667 18.27 8.78 29.19 3.41
1913 1972 7.333423 TGTCACTATTGTACACATCCTTAAAGC 59.667 37.037 0.00 0.00 0.00 3.51
1935 1994 2.166254 CCCGGAAGCACAAGCATTAATT 59.834 45.455 0.73 0.00 45.49 1.40
1943 2002 7.359514 GGAAGCACAAGCATTAATTCTTTGAAC 60.360 37.037 0.00 0.00 45.49 3.18
1946 2005 4.923281 ACAAGCATTAATTCTTTGAACGGC 59.077 37.500 0.00 0.00 0.00 5.68
1953 2012 1.169661 TTCTTTGAACGGCGTGCCAT 61.170 50.000 15.70 0.00 35.37 4.40
1955 2014 2.128853 CTTTGAACGGCGTGCCATGT 62.129 55.000 15.70 0.00 35.37 3.21
1956 2015 0.885150 TTTGAACGGCGTGCCATGTA 60.885 50.000 15.70 0.00 35.37 2.29
1957 2016 1.570347 TTGAACGGCGTGCCATGTAC 61.570 55.000 15.70 0.00 35.37 2.90
1958 2017 3.078725 GAACGGCGTGCCATGTACG 62.079 63.158 15.70 13.51 43.88 3.67
1961 2020 2.184836 GGCGTGCCATGTACGGTA 59.815 61.111 17.79 0.00 41.56 4.02
1962 2021 2.169146 GGCGTGCCATGTACGGTAC 61.169 63.158 17.79 11.33 41.56 3.34
1963 2022 2.169146 GCGTGCCATGTACGGTACC 61.169 63.158 15.26 0.16 41.56 3.34
1964 2023 1.215912 CGTGCCATGTACGGTACCA 59.784 57.895 13.54 3.63 38.33 3.25
1965 2024 0.179094 CGTGCCATGTACGGTACCAT 60.179 55.000 13.54 0.00 38.33 3.55
1966 2025 1.295792 GTGCCATGTACGGTACCATG 58.704 55.000 13.54 16.22 35.77 3.66
1997 2056 0.468400 GATCGGGAGGCTCTAGGTGT 60.468 60.000 15.23 0.00 0.00 4.16
1999 2058 0.970937 TCGGGAGGCTCTAGGTGTTG 60.971 60.000 15.23 0.00 0.00 3.33
2004 2063 2.623502 GGAGGCTCTAGGTGTTGTAGGA 60.624 54.545 15.23 0.00 0.00 2.94
2047 2106 2.684843 GGTCCTGCTGCTTTGCTCG 61.685 63.158 0.00 0.00 0.00 5.03
2055 2114 2.223782 TGCTGCTTTGCTCGTGAAAAAT 60.224 40.909 0.00 0.00 0.00 1.82
2056 2115 3.004210 TGCTGCTTTGCTCGTGAAAAATA 59.996 39.130 0.00 0.00 0.00 1.40
2065 2124 3.914364 GCTCGTGAAAAATAAAGCCACAG 59.086 43.478 0.00 0.00 0.00 3.66
2066 2125 4.320202 GCTCGTGAAAAATAAAGCCACAGA 60.320 41.667 0.00 0.00 0.00 3.41
2177 2236 9.681692 TGACAAATTATTGAAGACAAGTTCATG 57.318 29.630 0.00 0.00 38.94 3.07
2178 2237 8.524870 ACAAATTATTGAAGACAAGTTCATGC 57.475 30.769 0.00 0.00 38.94 4.06
2179 2238 8.143193 ACAAATTATTGAAGACAAGTTCATGCA 58.857 29.630 0.00 0.00 38.94 3.96
2180 2239 8.430063 CAAATTATTGAAGACAAGTTCATGCAC 58.570 33.333 0.00 0.00 38.94 4.57
2181 2240 6.882610 TTATTGAAGACAAGTTCATGCACT 57.117 33.333 0.00 0.00 39.46 4.40
2182 2241 4.556942 TTGAAGACAAGTTCATGCACTG 57.443 40.909 0.00 0.00 36.34 3.66
2183 2242 3.807553 TGAAGACAAGTTCATGCACTGA 58.192 40.909 0.00 0.00 31.31 3.41
2239 2299 9.190858 TGAGTTGGAAAAATATTCGTGATTTTG 57.809 29.630 0.00 0.00 36.77 2.44
2261 2321 9.512435 TTTTGAAAAACATGCACAAATTAATGG 57.488 25.926 0.00 0.00 32.05 3.16
2264 2324 7.714377 TGAAAAACATGCACAAATTAATGGTCT 59.286 29.630 0.00 0.00 0.00 3.85
2272 2332 8.674263 TGCACAAATTAATGGTCTTGAATTTT 57.326 26.923 4.92 0.00 30.91 1.82
2273 2333 9.118300 TGCACAAATTAATGGTCTTGAATTTTT 57.882 25.926 4.92 0.00 30.91 1.94
2332 2393 7.734924 AAGAAGAAAAATGGGAAAAGAATGC 57.265 32.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
1 2 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
7 8 1.865340 GAGAGTGTCGGTGTCAAAACC 59.135 52.381 0.00 0.00 36.82 3.27
8 9 1.865340 GGAGAGTGTCGGTGTCAAAAC 59.135 52.381 0.00 0.00 0.00 2.43
9 10 1.202604 GGGAGAGTGTCGGTGTCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
10 11 0.391597 GGGAGAGTGTCGGTGTCAAA 59.608 55.000 0.00 0.00 0.00 2.69
11 12 0.469331 AGGGAGAGTGTCGGTGTCAA 60.469 55.000 0.00 0.00 0.00 3.18
12 13 0.894184 GAGGGAGAGTGTCGGTGTCA 60.894 60.000 0.00 0.00 0.00 3.58
13 14 0.894184 TGAGGGAGAGTGTCGGTGTC 60.894 60.000 0.00 0.00 0.00 3.67
14 15 1.153061 TGAGGGAGAGTGTCGGTGT 59.847 57.895 0.00 0.00 0.00 4.16
15 16 0.896019 AGTGAGGGAGAGTGTCGGTG 60.896 60.000 0.00 0.00 0.00 4.94
16 17 0.896019 CAGTGAGGGAGAGTGTCGGT 60.896 60.000 0.00 0.00 0.00 4.69
17 18 0.609406 TCAGTGAGGGAGAGTGTCGG 60.609 60.000 0.00 0.00 0.00 4.79
18 19 1.468985 ATCAGTGAGGGAGAGTGTCG 58.531 55.000 0.00 0.00 0.00 4.35
19 20 3.971245 AAATCAGTGAGGGAGAGTGTC 57.029 47.619 0.00 0.00 0.00 3.67
20 21 4.713792 AAAAATCAGTGAGGGAGAGTGT 57.286 40.909 0.00 0.00 0.00 3.55
38 39 1.231221 CCATCACCGACGGTCAAAAA 58.769 50.000 18.72 0.57 31.02 1.94
39 40 0.107081 ACCATCACCGACGGTCAAAA 59.893 50.000 18.72 3.32 31.02 2.44
40 41 0.320073 GACCATCACCGACGGTCAAA 60.320 55.000 18.72 6.12 43.41 2.69
41 42 1.183030 AGACCATCACCGACGGTCAA 61.183 55.000 18.72 8.98 45.93 3.18
42 43 1.592400 GAGACCATCACCGACGGTCA 61.592 60.000 18.72 4.09 45.93 4.02
43 44 1.139095 GAGACCATCACCGACGGTC 59.861 63.158 18.72 4.62 44.15 4.79
44 45 1.304217 AGAGACCATCACCGACGGT 60.304 57.895 15.37 15.37 35.62 4.83
45 46 1.032657 AGAGAGACCATCACCGACGG 61.033 60.000 13.61 13.61 0.00 4.79
46 47 0.811915 AAGAGAGACCATCACCGACG 59.188 55.000 0.00 0.00 0.00 5.12
47 48 2.096248 AGAAGAGAGACCATCACCGAC 58.904 52.381 0.00 0.00 0.00 4.79
48 49 2.025793 AGAGAAGAGAGACCATCACCGA 60.026 50.000 0.00 0.00 0.00 4.69
49 50 2.374184 AGAGAAGAGAGACCATCACCG 58.626 52.381 0.00 0.00 0.00 4.94
50 51 3.132111 GGAAGAGAAGAGAGACCATCACC 59.868 52.174 0.00 0.00 0.00 4.02
51 52 4.023291 AGGAAGAGAAGAGAGACCATCAC 58.977 47.826 0.00 0.00 0.00 3.06
52 53 4.329638 AGGAAGAGAAGAGAGACCATCA 57.670 45.455 0.00 0.00 0.00 3.07
53 54 4.099419 GGAAGGAAGAGAAGAGAGACCATC 59.901 50.000 0.00 0.00 0.00 3.51
54 55 4.030216 GGAAGGAAGAGAAGAGAGACCAT 58.970 47.826 0.00 0.00 0.00 3.55
55 56 3.436243 GGAAGGAAGAGAAGAGAGACCA 58.564 50.000 0.00 0.00 0.00 4.02
56 57 2.764010 GGGAAGGAAGAGAAGAGAGACC 59.236 54.545 0.00 0.00 0.00 3.85
57 58 2.425668 CGGGAAGGAAGAGAAGAGAGAC 59.574 54.545 0.00 0.00 0.00 3.36
58 59 2.041891 ACGGGAAGGAAGAGAAGAGAGA 59.958 50.000 0.00 0.00 0.00 3.10
59 60 2.165437 CACGGGAAGGAAGAGAAGAGAG 59.835 54.545 0.00 0.00 0.00 3.20
60 61 2.171840 CACGGGAAGGAAGAGAAGAGA 58.828 52.381 0.00 0.00 0.00 3.10
61 62 1.404851 GCACGGGAAGGAAGAGAAGAG 60.405 57.143 0.00 0.00 0.00 2.85
62 63 0.608640 GCACGGGAAGGAAGAGAAGA 59.391 55.000 0.00 0.00 0.00 2.87
63 64 0.321671 TGCACGGGAAGGAAGAGAAG 59.678 55.000 0.00 0.00 0.00 2.85
64 65 0.984230 ATGCACGGGAAGGAAGAGAA 59.016 50.000 0.00 0.00 0.00 2.87
65 66 0.984230 AATGCACGGGAAGGAAGAGA 59.016 50.000 0.00 0.00 0.00 3.10
66 67 2.280628 GTAATGCACGGGAAGGAAGAG 58.719 52.381 0.00 0.00 0.00 2.85
67 68 1.065709 GGTAATGCACGGGAAGGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
68 69 1.339631 TGGTAATGCACGGGAAGGAAG 60.340 52.381 0.00 0.00 0.00 3.46
69 70 0.693622 TGGTAATGCACGGGAAGGAA 59.306 50.000 0.00 0.00 0.00 3.36
70 71 0.693622 TTGGTAATGCACGGGAAGGA 59.306 50.000 0.00 0.00 0.00 3.36
71 72 1.540267 TTTGGTAATGCACGGGAAGG 58.460 50.000 0.00 0.00 0.00 3.46
72 73 2.094752 CCTTTTGGTAATGCACGGGAAG 60.095 50.000 0.00 0.00 34.07 3.46
73 74 1.889829 CCTTTTGGTAATGCACGGGAA 59.110 47.619 0.00 0.00 34.07 3.97
74 75 1.540267 CCTTTTGGTAATGCACGGGA 58.460 50.000 0.00 0.00 34.07 5.14
86 87 5.560724 TCTTTCTGGTGATAGACCTTTTGG 58.439 41.667 0.00 0.00 46.32 3.28
87 88 6.936900 TCTTCTTTCTGGTGATAGACCTTTTG 59.063 38.462 0.00 0.00 46.32 2.44
88 89 7.079451 TCTTCTTTCTGGTGATAGACCTTTT 57.921 36.000 0.00 0.00 46.32 2.27
89 90 6.688073 TCTTCTTTCTGGTGATAGACCTTT 57.312 37.500 0.00 0.00 46.32 3.11
90 91 6.498651 TCTTCTTCTTTCTGGTGATAGACCTT 59.501 38.462 0.00 0.00 46.32 3.50
91 92 6.019748 TCTTCTTCTTTCTGGTGATAGACCT 58.980 40.000 0.00 0.00 46.32 3.85
92 93 6.287589 TCTTCTTCTTTCTGGTGATAGACC 57.712 41.667 0.00 0.00 46.37 3.85
93 94 7.607250 TCTTCTTCTTCTTTCTGGTGATAGAC 58.393 38.462 0.00 0.00 31.66 2.59
94 95 7.782897 TCTTCTTCTTCTTTCTGGTGATAGA 57.217 36.000 0.00 0.00 0.00 1.98
95 96 8.310382 TCTTCTTCTTCTTCTTTCTGGTGATAG 58.690 37.037 0.00 0.00 0.00 2.08
96 97 8.195165 TCTTCTTCTTCTTCTTTCTGGTGATA 57.805 34.615 0.00 0.00 0.00 2.15
97 98 7.072263 TCTTCTTCTTCTTCTTTCTGGTGAT 57.928 36.000 0.00 0.00 0.00 3.06
98 99 6.485830 TCTTCTTCTTCTTCTTTCTGGTGA 57.514 37.500 0.00 0.00 0.00 4.02
99 100 5.179182 GCTCTTCTTCTTCTTCTTTCTGGTG 59.821 44.000 0.00 0.00 0.00 4.17
100 101 5.304778 GCTCTTCTTCTTCTTCTTTCTGGT 58.695 41.667 0.00 0.00 0.00 4.00
101 102 4.388469 CGCTCTTCTTCTTCTTCTTTCTGG 59.612 45.833 0.00 0.00 0.00 3.86
102 103 5.118510 GTCGCTCTTCTTCTTCTTCTTTCTG 59.881 44.000 0.00 0.00 0.00 3.02
103 104 5.227152 GTCGCTCTTCTTCTTCTTCTTTCT 58.773 41.667 0.00 0.00 0.00 2.52
104 105 4.387559 GGTCGCTCTTCTTCTTCTTCTTTC 59.612 45.833 0.00 0.00 0.00 2.62
105 106 4.039852 AGGTCGCTCTTCTTCTTCTTCTTT 59.960 41.667 0.00 0.00 0.00 2.52
106 107 3.576550 AGGTCGCTCTTCTTCTTCTTCTT 59.423 43.478 0.00 0.00 0.00 2.52
107 108 3.161866 AGGTCGCTCTTCTTCTTCTTCT 58.838 45.455 0.00 0.00 0.00 2.85
108 109 3.507786 GAGGTCGCTCTTCTTCTTCTTC 58.492 50.000 0.00 0.00 0.00 2.87
109 110 2.232696 GGAGGTCGCTCTTCTTCTTCTT 59.767 50.000 0.00 0.00 0.00 2.52
110 111 1.822371 GGAGGTCGCTCTTCTTCTTCT 59.178 52.381 0.00 0.00 0.00 2.85
111 112 1.546476 TGGAGGTCGCTCTTCTTCTTC 59.454 52.381 0.00 0.00 0.00 2.87
112 113 1.273886 GTGGAGGTCGCTCTTCTTCTT 59.726 52.381 0.00 0.00 0.00 2.52
113 114 0.892063 GTGGAGGTCGCTCTTCTTCT 59.108 55.000 0.00 0.00 0.00 2.85
114 115 0.603569 TGTGGAGGTCGCTCTTCTTC 59.396 55.000 0.00 0.00 0.00 2.87
115 116 1.048601 TTGTGGAGGTCGCTCTTCTT 58.951 50.000 0.00 0.00 0.00 2.52
116 117 0.318762 GTTGTGGAGGTCGCTCTTCT 59.681 55.000 0.00 0.00 0.00 2.85
117 118 0.033504 TGTTGTGGAGGTCGCTCTTC 59.966 55.000 0.00 0.00 0.00 2.87
118 119 0.468226 TTGTTGTGGAGGTCGCTCTT 59.532 50.000 0.00 0.00 0.00 2.85
119 120 0.249911 GTTGTTGTGGAGGTCGCTCT 60.250 55.000 0.00 0.00 0.00 4.09
120 121 0.531974 TGTTGTTGTGGAGGTCGCTC 60.532 55.000 0.00 0.00 0.00 5.03
121 122 0.532862 CTGTTGTTGTGGAGGTCGCT 60.533 55.000 0.00 0.00 0.00 4.93
122 123 0.814010 ACTGTTGTTGTGGAGGTCGC 60.814 55.000 0.00 0.00 0.00 5.19
123 124 1.217882 GACTGTTGTTGTGGAGGTCG 58.782 55.000 0.00 0.00 0.00 4.79
124 125 1.217882 CGACTGTTGTTGTGGAGGTC 58.782 55.000 0.00 0.00 0.00 3.85
125 126 0.179056 CCGACTGTTGTTGTGGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
126 127 0.884704 CCCGACTGTTGTTGTGGAGG 60.885 60.000 0.00 0.00 0.00 4.30
127 128 0.105964 TCCCGACTGTTGTTGTGGAG 59.894 55.000 0.00 0.00 0.00 3.86
128 129 0.762418 ATCCCGACTGTTGTTGTGGA 59.238 50.000 0.00 0.00 34.05 4.02
129 130 1.535462 GAATCCCGACTGTTGTTGTGG 59.465 52.381 0.00 0.00 0.00 4.17
130 131 2.494059 AGAATCCCGACTGTTGTTGTG 58.506 47.619 0.00 0.00 0.00 3.33
131 132 2.878406 CAAGAATCCCGACTGTTGTTGT 59.122 45.455 0.00 0.00 0.00 3.32
132 133 2.878406 ACAAGAATCCCGACTGTTGTTG 59.122 45.455 0.00 0.00 33.75 3.33
133 134 3.208747 ACAAGAATCCCGACTGTTGTT 57.791 42.857 0.00 0.00 0.00 2.83
134 135 2.930826 ACAAGAATCCCGACTGTTGT 57.069 45.000 0.00 0.00 0.00 3.32
135 136 3.403038 AGAACAAGAATCCCGACTGTTG 58.597 45.455 0.00 0.00 0.00 3.33
136 137 3.325135 AGAGAACAAGAATCCCGACTGTT 59.675 43.478 0.00 0.00 0.00 3.16
137 138 2.900546 AGAGAACAAGAATCCCGACTGT 59.099 45.455 0.00 0.00 0.00 3.55
138 139 3.056536 TGAGAGAACAAGAATCCCGACTG 60.057 47.826 0.00 0.00 0.00 3.51
139 140 3.165875 TGAGAGAACAAGAATCCCGACT 58.834 45.455 0.00 0.00 0.00 4.18
140 141 3.594603 TGAGAGAACAAGAATCCCGAC 57.405 47.619 0.00 0.00 0.00 4.79
141 142 7.597288 TTATATGAGAGAACAAGAATCCCGA 57.403 36.000 0.00 0.00 0.00 5.14
142 143 7.332926 CCATTATATGAGAGAACAAGAATCCCG 59.667 40.741 0.00 0.00 0.00 5.14
143 144 7.609532 CCCATTATATGAGAGAACAAGAATCCC 59.390 40.741 0.00 0.00 0.00 3.85
144 145 8.160106 ACCCATTATATGAGAGAACAAGAATCC 58.840 37.037 0.00 0.00 0.00 3.01
147 148 9.213777 ACTACCCATTATATGAGAGAACAAGAA 57.786 33.333 0.00 0.00 0.00 2.52
148 149 8.642432 CACTACCCATTATATGAGAGAACAAGA 58.358 37.037 0.00 0.00 0.00 3.02
149 150 7.875041 CCACTACCCATTATATGAGAGAACAAG 59.125 40.741 0.00 0.00 0.00 3.16
150 151 7.202093 CCCACTACCCATTATATGAGAGAACAA 60.202 40.741 0.00 0.00 0.00 2.83
151 152 6.270000 CCCACTACCCATTATATGAGAGAACA 59.730 42.308 0.00 0.00 0.00 3.18
152 153 6.702329 CCCACTACCCATTATATGAGAGAAC 58.298 44.000 0.00 0.00 0.00 3.01
153 154 5.248477 GCCCACTACCCATTATATGAGAGAA 59.752 44.000 0.00 0.00 0.00 2.87
154 155 4.777896 GCCCACTACCCATTATATGAGAGA 59.222 45.833 0.00 0.00 0.00 3.10
155 156 4.780021 AGCCCACTACCCATTATATGAGAG 59.220 45.833 0.00 0.00 0.00 3.20
156 157 4.763355 AGCCCACTACCCATTATATGAGA 58.237 43.478 0.00 0.00 0.00 3.27
157 158 5.249393 AGAAGCCCACTACCCATTATATGAG 59.751 44.000 0.00 0.00 0.00 2.90
158 159 5.013079 CAGAAGCCCACTACCCATTATATGA 59.987 44.000 0.00 0.00 0.00 2.15
159 160 5.248640 CAGAAGCCCACTACCCATTATATG 58.751 45.833 0.00 0.00 0.00 1.78
160 161 4.263506 GCAGAAGCCCACTACCCATTATAT 60.264 45.833 0.00 0.00 33.58 0.86
161 162 3.072476 GCAGAAGCCCACTACCCATTATA 59.928 47.826 0.00 0.00 33.58 0.98
162 163 2.158608 GCAGAAGCCCACTACCCATTAT 60.159 50.000 0.00 0.00 33.58 1.28
163 164 1.211949 GCAGAAGCCCACTACCCATTA 59.788 52.381 0.00 0.00 33.58 1.90
164 165 0.034089 GCAGAAGCCCACTACCCATT 60.034 55.000 0.00 0.00 33.58 3.16
165 166 1.207488 TGCAGAAGCCCACTACCCAT 61.207 55.000 0.00 0.00 41.13 4.00
166 167 1.845664 TGCAGAAGCCCACTACCCA 60.846 57.895 0.00 0.00 41.13 4.51
167 168 1.377333 GTGCAGAAGCCCACTACCC 60.377 63.158 0.00 0.00 41.13 3.69
168 169 1.377333 GGTGCAGAAGCCCACTACC 60.377 63.158 0.00 0.00 41.13 3.18
169 170 0.391793 GAGGTGCAGAAGCCCACTAC 60.392 60.000 0.00 0.00 41.13 2.73
170 171 0.545309 AGAGGTGCAGAAGCCCACTA 60.545 55.000 0.00 0.00 41.13 2.74
171 172 1.422161 AAGAGGTGCAGAAGCCCACT 61.422 55.000 0.00 0.00 41.13 4.00
172 173 0.538287 AAAGAGGTGCAGAAGCCCAC 60.538 55.000 0.00 0.00 41.13 4.61
173 174 0.538057 CAAAGAGGTGCAGAAGCCCA 60.538 55.000 0.00 0.00 41.13 5.36
174 175 1.246737 CCAAAGAGGTGCAGAAGCCC 61.247 60.000 0.00 0.00 41.13 5.19
175 176 1.246737 CCCAAAGAGGTGCAGAAGCC 61.247 60.000 0.00 0.00 35.33 4.35
176 177 1.871126 GCCCAAAGAGGTGCAGAAGC 61.871 60.000 0.00 0.00 34.73 3.86
177 178 0.251077 AGCCCAAAGAGGTGCAGAAG 60.251 55.000 0.00 0.00 36.41 2.85
178 179 0.538057 CAGCCCAAAGAGGTGCAGAA 60.538 55.000 0.00 0.00 36.41 3.02
179 180 1.073722 CAGCCCAAAGAGGTGCAGA 59.926 57.895 0.00 0.00 36.41 4.26
180 181 3.677527 CAGCCCAAAGAGGTGCAG 58.322 61.111 0.00 0.00 36.41 4.41
183 184 0.038166 TTAGGCAGCCCAAAGAGGTG 59.962 55.000 8.22 0.00 34.66 4.00
184 185 0.777446 TTTAGGCAGCCCAAAGAGGT 59.223 50.000 8.22 0.00 34.66 3.85
185 186 1.821136 CTTTTAGGCAGCCCAAAGAGG 59.179 52.381 22.14 7.48 30.24 3.69
186 187 1.821136 CCTTTTAGGCAGCCCAAAGAG 59.179 52.381 26.04 17.20 30.24 2.85
187 188 1.923356 CCTTTTAGGCAGCCCAAAGA 58.077 50.000 26.04 10.21 30.24 2.52
198 199 3.430453 TGACCATTTGAGGCCTTTTAGG 58.570 45.455 6.77 8.74 38.80 2.69
199 200 4.952335 AGATGACCATTTGAGGCCTTTTAG 59.048 41.667 6.77 0.00 0.00 1.85
200 201 4.934356 AGATGACCATTTGAGGCCTTTTA 58.066 39.130 6.77 0.00 0.00 1.52
201 202 3.766051 GAGATGACCATTTGAGGCCTTTT 59.234 43.478 6.77 0.00 0.00 2.27
202 203 3.359950 GAGATGACCATTTGAGGCCTTT 58.640 45.455 6.77 0.00 0.00 3.11
203 204 2.357569 GGAGATGACCATTTGAGGCCTT 60.358 50.000 6.77 0.00 0.00 4.35
204 205 1.213926 GGAGATGACCATTTGAGGCCT 59.786 52.381 3.86 3.86 0.00 5.19
205 206 1.213926 AGGAGATGACCATTTGAGGCC 59.786 52.381 0.00 0.00 0.00 5.19
206 207 2.092753 TGAGGAGATGACCATTTGAGGC 60.093 50.000 0.00 0.00 0.00 4.70
207 208 3.054875 TGTGAGGAGATGACCATTTGAGG 60.055 47.826 0.00 0.00 0.00 3.86
208 209 4.190001 CTGTGAGGAGATGACCATTTGAG 58.810 47.826 0.00 0.00 0.00 3.02
209 210 3.620719 GCTGTGAGGAGATGACCATTTGA 60.621 47.826 0.00 0.00 0.00 2.69
210 211 2.681848 GCTGTGAGGAGATGACCATTTG 59.318 50.000 0.00 0.00 0.00 2.32
211 212 2.356535 GGCTGTGAGGAGATGACCATTT 60.357 50.000 0.00 0.00 0.00 2.32
212 213 1.211457 GGCTGTGAGGAGATGACCATT 59.789 52.381 0.00 0.00 0.00 3.16
213 214 0.835941 GGCTGTGAGGAGATGACCAT 59.164 55.000 0.00 0.00 0.00 3.55
214 215 1.267574 GGGCTGTGAGGAGATGACCA 61.268 60.000 0.00 0.00 0.00 4.02
215 216 1.267574 TGGGCTGTGAGGAGATGACC 61.268 60.000 0.00 0.00 0.00 4.02
216 217 0.107945 GTGGGCTGTGAGGAGATGAC 60.108 60.000 0.00 0.00 0.00 3.06
217 218 0.545071 TGTGGGCTGTGAGGAGATGA 60.545 55.000 0.00 0.00 0.00 2.92
218 219 0.545171 ATGTGGGCTGTGAGGAGATG 59.455 55.000 0.00 0.00 0.00 2.90
219 220 0.545171 CATGTGGGCTGTGAGGAGAT 59.455 55.000 0.00 0.00 0.00 2.75
220 221 0.545071 TCATGTGGGCTGTGAGGAGA 60.545 55.000 0.00 0.00 0.00 3.71
221 222 0.107800 CTCATGTGGGCTGTGAGGAG 60.108 60.000 0.00 0.00 36.57 3.69
222 223 1.985614 CTCATGTGGGCTGTGAGGA 59.014 57.895 0.00 0.00 36.57 3.71
223 224 4.631773 CTCATGTGGGCTGTGAGG 57.368 61.111 0.00 0.00 36.57 3.86
224 225 0.107800 CTCCTCATGTGGGCTGTGAG 60.108 60.000 13.71 0.00 39.20 3.51
225 226 1.556373 CCTCCTCATGTGGGCTGTGA 61.556 60.000 13.71 0.00 0.00 3.58
226 227 1.077930 CCTCCTCATGTGGGCTGTG 60.078 63.158 13.71 0.62 0.00 3.66
227 228 2.304056 CCCTCCTCATGTGGGCTGT 61.304 63.158 13.71 0.00 40.76 4.40
228 229 2.593978 CCCTCCTCATGTGGGCTG 59.406 66.667 13.71 5.00 40.76 4.85
251 252 0.806102 CTAGGGTGTGCCGATTGTCG 60.806 60.000 0.00 0.00 40.07 4.35
252 253 1.090052 GCTAGGGTGTGCCGATTGTC 61.090 60.000 0.00 0.00 34.97 3.18
253 254 1.078426 GCTAGGGTGTGCCGATTGT 60.078 57.895 0.00 0.00 34.97 2.71
254 255 0.811616 GAGCTAGGGTGTGCCGATTG 60.812 60.000 0.00 0.00 34.97 2.67
255 256 1.264749 TGAGCTAGGGTGTGCCGATT 61.265 55.000 0.00 0.00 34.97 3.34
256 257 1.685765 TGAGCTAGGGTGTGCCGAT 60.686 57.895 0.00 0.00 34.97 4.18
257 258 2.283604 TGAGCTAGGGTGTGCCGA 60.284 61.111 0.00 0.00 34.97 5.54
258 259 2.125512 GTGAGCTAGGGTGTGCCG 60.126 66.667 0.00 0.00 34.97 5.69
259 260 2.125512 CGTGAGCTAGGGTGTGCC 60.126 66.667 0.00 0.00 0.00 5.01
260 261 1.446272 GACGTGAGCTAGGGTGTGC 60.446 63.158 0.00 0.00 0.00 4.57
261 262 1.215647 GGACGTGAGCTAGGGTGTG 59.784 63.158 0.00 0.00 0.00 3.82
262 263 0.966370 GAGGACGTGAGCTAGGGTGT 60.966 60.000 0.00 0.00 0.00 4.16
263 264 1.668101 GGAGGACGTGAGCTAGGGTG 61.668 65.000 0.00 0.00 0.00 4.61
264 265 1.380112 GGAGGACGTGAGCTAGGGT 60.380 63.158 0.00 0.00 0.00 4.34
265 266 2.482333 CGGAGGACGTGAGCTAGGG 61.482 68.421 0.00 0.00 37.93 3.53
266 267 3.111939 CGGAGGACGTGAGCTAGG 58.888 66.667 0.00 0.00 37.93 3.02
283 284 3.670377 GTGGACGGCTGGCAAACC 61.670 66.667 0.00 1.87 0.00 3.27
284 285 2.193536 AAGTGGACGGCTGGCAAAC 61.194 57.895 0.00 0.00 0.00 2.93
285 286 2.192861 CAAGTGGACGGCTGGCAAA 61.193 57.895 0.00 0.00 0.00 3.68
286 287 2.594303 CAAGTGGACGGCTGGCAA 60.594 61.111 0.00 0.00 0.00 4.52
287 288 4.641645 CCAAGTGGACGGCTGGCA 62.642 66.667 0.00 0.00 37.39 4.92
293 294 2.046892 CCTCAGCCAAGTGGACGG 60.047 66.667 0.18 0.00 37.39 4.79
294 295 1.374758 GACCTCAGCCAAGTGGACG 60.375 63.158 0.18 0.00 37.39 4.79
295 296 1.374758 CGACCTCAGCCAAGTGGAC 60.375 63.158 0.18 0.00 37.39 4.02
296 297 3.059982 CGACCTCAGCCAAGTGGA 58.940 61.111 0.18 0.00 37.39 4.02
297 298 2.743928 GCGACCTCAGCCAAGTGG 60.744 66.667 0.00 0.00 38.53 4.00
350 351 2.022129 CTGTTCGGAGTGGCGTCAC 61.022 63.158 13.44 13.44 43.93 3.67
351 352 2.338620 CTGTTCGGAGTGGCGTCA 59.661 61.111 0.00 0.00 0.00 4.35
352 353 2.432628 CCTGTTCGGAGTGGCGTC 60.433 66.667 0.00 0.00 33.16 5.19
353 354 4.003788 CCCTGTTCGGAGTGGCGT 62.004 66.667 0.00 0.00 33.16 5.68
356 357 4.760047 CGGCCCTGTTCGGAGTGG 62.760 72.222 0.00 0.00 33.16 4.00
390 391 0.618680 TGCATCTGCTACAGGGGACT 60.619 55.000 3.53 0.00 41.85 3.85
391 392 0.179062 CTGCATCTGCTACAGGGGAC 60.179 60.000 3.53 0.00 42.66 4.46
392 393 0.325577 TCTGCATCTGCTACAGGGGA 60.326 55.000 3.53 0.00 42.66 4.81
393 394 0.106335 CTCTGCATCTGCTACAGGGG 59.894 60.000 3.53 0.00 42.66 4.79
394 395 0.532417 GCTCTGCATCTGCTACAGGG 60.532 60.000 3.53 0.00 42.66 4.45
395 396 0.177373 TGCTCTGCATCTGCTACAGG 59.823 55.000 3.53 0.00 42.66 4.00
396 397 1.573026 CTGCTCTGCATCTGCTACAG 58.427 55.000 3.53 2.55 42.66 2.74
397 398 0.461516 GCTGCTCTGCATCTGCTACA 60.462 55.000 3.53 0.00 42.66 2.74
398 399 1.489070 CGCTGCTCTGCATCTGCTAC 61.489 60.000 3.53 0.09 42.66 3.58
399 400 1.227176 CGCTGCTCTGCATCTGCTA 60.227 57.895 3.53 0.00 42.66 3.49
400 401 2.511829 CGCTGCTCTGCATCTGCT 60.512 61.111 3.53 0.00 42.66 4.24
401 402 2.037913 CTTCGCTGCTCTGCATCTGC 62.038 60.000 0.00 0.00 38.13 4.26
402 403 1.429927 CCTTCGCTGCTCTGCATCTG 61.430 60.000 0.00 0.00 38.13 2.90
403 404 1.153409 CCTTCGCTGCTCTGCATCT 60.153 57.895 0.00 0.00 38.13 2.90
404 405 2.821688 GCCTTCGCTGCTCTGCATC 61.822 63.158 0.00 0.00 38.13 3.91
405 406 2.823147 GCCTTCGCTGCTCTGCAT 60.823 61.111 0.00 0.00 38.13 3.96
424 425 4.722700 CAGGGAAGGTGGCGGTGG 62.723 72.222 0.00 0.00 0.00 4.61
425 426 4.722700 CCAGGGAAGGTGGCGGTG 62.723 72.222 0.00 0.00 0.00 4.94
486 487 4.845307 CCCTCCCTTCCCTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
487 488 4.845307 CCCCTCCCTTCCCTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
488 489 4.845307 CCCCCTCCCTTCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
507 508 4.506255 AACCATAGCCCCGCTGCC 62.506 66.667 0.00 0.00 40.10 4.85
508 509 2.052104 AAAACCATAGCCCCGCTGC 61.052 57.895 0.00 0.00 40.10 5.25
509 510 0.679640 TCAAAACCATAGCCCCGCTG 60.680 55.000 0.00 0.00 40.10 5.18
510 511 0.394352 CTCAAAACCATAGCCCCGCT 60.394 55.000 0.00 0.00 43.41 5.52
511 512 2.004808 GCTCAAAACCATAGCCCCGC 62.005 60.000 0.00 0.00 0.00 6.13
512 513 2.106844 GCTCAAAACCATAGCCCCG 58.893 57.895 0.00 0.00 0.00 5.73
516 517 1.384222 CGGGGGCTCAAAACCATAGC 61.384 60.000 0.00 0.00 35.47 2.97
517 518 0.254747 TCGGGGGCTCAAAACCATAG 59.745 55.000 0.00 0.00 0.00 2.23
518 519 0.254747 CTCGGGGGCTCAAAACCATA 59.745 55.000 0.00 0.00 0.00 2.74
519 520 1.000896 CTCGGGGGCTCAAAACCAT 60.001 57.895 0.00 0.00 0.00 3.55
520 521 2.406002 GACTCGGGGGCTCAAAACCA 62.406 60.000 0.00 0.00 0.00 3.67
521 522 1.674651 GACTCGGGGGCTCAAAACC 60.675 63.158 0.00 0.00 0.00 3.27
522 523 2.033194 CGACTCGGGGGCTCAAAAC 61.033 63.158 0.00 0.00 0.00 2.43
523 524 2.345991 CGACTCGGGGGCTCAAAA 59.654 61.111 0.00 0.00 0.00 2.44
524 525 4.388499 GCGACTCGGGGGCTCAAA 62.388 66.667 0.00 0.00 0.00 2.69
542 543 1.553690 ATGGTGTCACTCCCTTCCGG 61.554 60.000 2.35 0.00 0.00 5.14
543 544 0.324943 AATGGTGTCACTCCCTTCCG 59.675 55.000 2.35 0.00 0.00 4.30
544 545 2.092914 CCTAATGGTGTCACTCCCTTCC 60.093 54.545 2.35 0.00 0.00 3.46
545 546 2.572104 ACCTAATGGTGTCACTCCCTTC 59.428 50.000 2.35 0.00 46.51 3.46
546 547 2.632537 ACCTAATGGTGTCACTCCCTT 58.367 47.619 2.35 0.00 46.51 3.95
547 548 2.344093 ACCTAATGGTGTCACTCCCT 57.656 50.000 2.35 0.00 46.51 4.20
558 559 4.618920 AGGCGGAAGTATAACCTAATGG 57.381 45.455 0.00 0.00 39.83 3.16
559 560 5.238650 CCAAAGGCGGAAGTATAACCTAATG 59.761 44.000 0.00 0.00 0.00 1.90
575 576 4.654091 ATTACATTTCCATCCAAAGGCG 57.346 40.909 0.00 0.00 0.00 5.52
624 625 4.911514 AATTAACTTCGGCTGTTGTGTT 57.088 36.364 0.00 0.00 0.00 3.32
626 627 7.081349 TGAATTAATTAACTTCGGCTGTTGTG 58.919 34.615 0.00 0.00 0.00 3.33
646 647 7.122055 TGCCCTAATCGTGAAAGTATTTGAATT 59.878 33.333 0.00 0.00 39.27 2.17
651 652 8.691661 AATATGCCCTAATCGTGAAAGTATTT 57.308 30.769 0.00 0.00 43.98 1.40
654 655 8.402472 CAAAAATATGCCCTAATCGTGAAAGTA 58.598 33.333 0.00 0.00 0.00 2.24
670 671 7.254218 GCCACTGATCTAAAAGCAAAAATATGC 60.254 37.037 0.00 0.00 46.78 3.14
671 672 7.223387 GGCCACTGATCTAAAAGCAAAAATATG 59.777 37.037 0.00 0.00 0.00 1.78
679 680 2.819608 GTTGGCCACTGATCTAAAAGCA 59.180 45.455 3.88 0.00 0.00 3.91
759 763 1.004595 CGTGCAGGATGTGATGTGAG 58.995 55.000 0.00 0.00 39.31 3.51
785 789 1.739562 CTGCAGGAGAAGCGTGGAC 60.740 63.158 5.57 0.00 33.10 4.02
793 797 2.346766 TCAAACTTGCTGCAGGAGAA 57.653 45.000 19.16 0.00 0.00 2.87
794 798 1.949525 GTTCAAACTTGCTGCAGGAGA 59.050 47.619 19.16 9.99 0.00 3.71
797 801 2.400399 CATGTTCAAACTTGCTGCAGG 58.600 47.619 17.12 10.47 0.00 4.85
839 843 2.738213 ATCTGATCGATTGGGCGCCC 62.738 60.000 39.40 39.40 0.00 6.13
859 863 4.937620 GTGGCAGAAGAAATCATGTGACTA 59.062 41.667 0.00 0.00 0.00 2.59
903 907 2.351210 GCAACGCCGATCGCATTC 60.351 61.111 10.32 0.00 43.23 2.67
929 933 7.043125 CGCTTAGTATATATGATGTGATGGCAC 60.043 40.741 0.00 0.00 45.35 5.01
930 934 6.980397 CGCTTAGTATATATGATGTGATGGCA 59.020 38.462 0.00 0.00 0.00 4.92
931 935 6.980978 ACGCTTAGTATATATGATGTGATGGC 59.019 38.462 0.00 0.00 0.00 4.40
932 936 7.649705 GGACGCTTAGTATATATGATGTGATGG 59.350 40.741 0.00 0.00 0.00 3.51
933 937 8.409371 AGGACGCTTAGTATATATGATGTGATG 58.591 37.037 0.00 0.00 0.00 3.07
934 938 8.526667 AGGACGCTTAGTATATATGATGTGAT 57.473 34.615 0.00 0.00 0.00 3.06
951 955 0.106708 TCTGCTGAACAAGGACGCTT 59.893 50.000 0.00 0.00 0.00 4.68
967 971 4.439426 GCTGAGTACAGTGTACTCCATCTG 60.439 50.000 40.75 29.76 45.04 2.90
1109 1136 2.507452 CGAGGGCCTGCATCATGA 59.493 61.111 12.95 0.00 0.00 3.07
1197 1225 2.022129 GACCTCACGGTTCAGCACG 61.022 63.158 0.00 0.00 45.73 5.34
1227 1263 1.001641 GATGGGCTTCCACTGCTGT 60.002 57.895 0.00 0.00 44.44 4.40
1278 1314 4.111016 CTACTGCGGTCGTCGGCA 62.111 66.667 13.54 13.54 45.17 5.69
1309 1345 2.345244 CAGCACCTTGAGCTCGGT 59.655 61.111 9.64 8.43 41.14 4.69
1481 1523 4.500116 GCACGGACGGGAGCTCTC 62.500 72.222 14.64 9.06 0.00 3.20
1590 1646 3.319198 GGAGGAACACGGGGAGCA 61.319 66.667 0.00 0.00 0.00 4.26
1620 1678 4.338879 ACCATCTATGCAGCTTCAACTTT 58.661 39.130 0.00 0.00 0.00 2.66
1679 1737 8.768501 TCTTTAAGACTATCTTATGAGCCAGA 57.231 34.615 0.00 0.00 38.60 3.86
1701 1759 7.014808 GTGTCAGGCTTAGGATAAGACTATCTT 59.985 40.741 4.62 0.00 40.35 2.40
1702 1760 6.492087 GTGTCAGGCTTAGGATAAGACTATCT 59.508 42.308 4.62 0.00 32.89 1.98
1703 1761 6.568844 CGTGTCAGGCTTAGGATAAGACTATC 60.569 46.154 4.62 2.77 32.89 2.08
1704 1762 5.241949 CGTGTCAGGCTTAGGATAAGACTAT 59.758 44.000 4.62 0.00 32.89 2.12
1705 1763 4.579340 CGTGTCAGGCTTAGGATAAGACTA 59.421 45.833 4.62 0.00 32.89 2.59
1706 1764 3.381908 CGTGTCAGGCTTAGGATAAGACT 59.618 47.826 0.00 0.00 35.62 3.24
1707 1765 3.707793 CGTGTCAGGCTTAGGATAAGAC 58.292 50.000 0.76 0.00 0.00 3.01
1708 1766 2.100916 GCGTGTCAGGCTTAGGATAAGA 59.899 50.000 10.25 0.00 0.00 2.10
1709 1767 2.159099 TGCGTGTCAGGCTTAGGATAAG 60.159 50.000 17.72 0.00 0.00 1.73
1710 1768 1.828595 TGCGTGTCAGGCTTAGGATAA 59.171 47.619 17.72 0.00 0.00 1.75
1711 1769 1.480789 TGCGTGTCAGGCTTAGGATA 58.519 50.000 17.72 0.00 0.00 2.59
1712 1770 0.613260 TTGCGTGTCAGGCTTAGGAT 59.387 50.000 17.72 0.00 0.00 3.24
1812 1871 9.660180 AAGTAGAAAAAGGCTTATCTCTAACAG 57.340 33.333 16.14 0.00 0.00 3.16
1831 1890 4.015541 AGGGGGTGGATAGAGAAAGTAGAA 60.016 45.833 0.00 0.00 0.00 2.10
1837 1896 2.844348 GTTGAGGGGGTGGATAGAGAAA 59.156 50.000 0.00 0.00 0.00 2.52
1844 1903 0.912487 TAAGCGTTGAGGGGGTGGAT 60.912 55.000 0.00 0.00 0.00 3.41
1845 1904 0.912487 ATAAGCGTTGAGGGGGTGGA 60.912 55.000 0.00 0.00 0.00 4.02
1846 1905 0.463833 GATAAGCGTTGAGGGGGTGG 60.464 60.000 0.00 0.00 0.00 4.61
1859 1918 8.777865 TTAAGAGTGCCATGTATATGATAAGC 57.222 34.615 0.25 0.00 36.36 3.09
1866 1925 7.875041 GTGACATCTTAAGAGTGCCATGTATAT 59.125 37.037 11.53 0.00 0.00 0.86
1871 1930 4.511527 AGTGACATCTTAAGAGTGCCATG 58.488 43.478 11.53 5.70 0.00 3.66
1872 1931 4.833478 AGTGACATCTTAAGAGTGCCAT 57.167 40.909 11.53 0.00 0.00 4.40
1893 1952 5.442391 GGGGCTTTAAGGATGTGTACAATA 58.558 41.667 0.00 0.00 0.00 1.90
1913 1972 0.679640 TAATGCTTGTGCTTCCGGGG 60.680 55.000 0.00 0.00 40.48 5.73
1935 1994 1.599518 ATGGCACGCCGTTCAAAGA 60.600 52.632 3.13 0.00 39.42 2.52
1943 2002 3.703255 TACCGTACATGGCACGCCG 62.703 63.158 14.59 6.69 38.07 6.46
1946 2005 0.179094 ATGGTACCGTACATGGCACG 60.179 55.000 4.29 13.43 39.10 5.34
1953 2012 3.770625 CCATGCATGGTACCGTACA 57.229 52.632 33.68 9.52 43.05 2.90
1963 2022 0.949397 CGATCCCTTGACCATGCATG 59.051 55.000 20.19 20.19 0.00 4.06
1964 2023 0.179009 CCGATCCCTTGACCATGCAT 60.179 55.000 0.00 0.00 0.00 3.96
1965 2024 1.224315 CCGATCCCTTGACCATGCA 59.776 57.895 0.00 0.00 0.00 3.96
1966 2025 1.526917 CCCGATCCCTTGACCATGC 60.527 63.158 0.00 0.00 0.00 4.06
1976 2035 1.608046 CCTAGAGCCTCCCGATCCC 60.608 68.421 0.00 0.00 0.00 3.85
2030 2089 1.963338 ACGAGCAAAGCAGCAGGAC 60.963 57.895 0.00 0.00 36.85 3.85
2038 2097 4.143326 GGCTTTATTTTTCACGAGCAAAGC 60.143 41.667 7.44 7.44 43.40 3.51
2047 2106 9.476202 AAAATACTCTGTGGCTTTATTTTTCAC 57.524 29.630 0.00 0.00 31.38 3.18
2056 2115 9.830975 AAATTAACAAAAATACTCTGTGGCTTT 57.169 25.926 0.00 0.00 0.00 3.51
2157 2216 7.175467 TCAGTGCATGAACTTGTCTTCAATAAT 59.825 33.333 2.59 0.00 33.85 1.28
2160 2219 4.823442 TCAGTGCATGAACTTGTCTTCAAT 59.177 37.500 2.59 0.00 33.85 2.57
2177 2236 8.510505 AGAAATACTGATTTTCTTTCTCAGTGC 58.489 33.333 13.20 2.66 46.71 4.40
2213 2273 9.190858 CAAAATCACGAATATTTTTCCAACTCA 57.809 29.630 0.00 0.00 35.00 3.41
2214 2274 9.405587 TCAAAATCACGAATATTTTTCCAACTC 57.594 29.630 0.00 0.00 35.00 3.01
2239 2299 8.086851 AGACCATTAATTTGTGCATGTTTTTC 57.913 30.769 0.00 0.00 0.00 2.29
2303 2364 9.513906 TTCTTTTCCCATTTTTCTTCTTTGTTT 57.486 25.926 0.00 0.00 0.00 2.83
2370 2431 2.169144 TGTAGATGGGCTCATGACACAG 59.831 50.000 2.16 0.00 32.98 3.66
2372 2433 2.555199 GTGTAGATGGGCTCATGACAC 58.445 52.381 20.18 20.18 38.52 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.