Multiple sequence alignment - TraesCS3B01G586700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G586700 chr3B 100.000 2453 0 0 1 2453 813308268 813305816 0.000000e+00 4530.0
1 TraesCS3B01G586700 chr3B 90.312 1796 140 21 605 2388 788510226 788511999 0.000000e+00 2322.0
2 TraesCS3B01G586700 chr3B 90.217 1523 127 15 933 2452 27487922 27486419 0.000000e+00 1967.0
3 TraesCS3B01G586700 chr3B 91.277 1261 86 11 604 1842 809059558 809058300 0.000000e+00 1698.0
4 TraesCS3B01G586700 chr3B 88.721 1259 107 16 605 1839 788406586 788405339 0.000000e+00 1506.0
5 TraesCS3B01G586700 chr3B 90.076 1179 80 18 605 1753 818053277 818052106 0.000000e+00 1495.0
6 TraesCS3B01G586700 chr3B 88.739 888 64 18 605 1471 825572727 825571855 0.000000e+00 1053.0
7 TraesCS3B01G586700 chr3B 86.310 935 93 14 1542 2452 825545785 825544862 0.000000e+00 985.0
8 TraesCS3B01G586700 chr3B 88.763 792 71 10 829 1607 824380201 824379415 0.000000e+00 953.0
9 TraesCS3B01G586700 chr3B 94.575 424 17 4 1 423 764445977 764445559 0.000000e+00 651.0
10 TraesCS3B01G586700 chr3B 85.784 619 49 9 605 1204 813269809 813269211 9.640000e-174 619.0
11 TraesCS3B01G586700 chr3B 95.640 344 13 2 1 343 824380764 824380422 3.570000e-153 551.0
12 TraesCS3B01G586700 chr3B 95.804 286 11 1 85 369 809061975 809061690 6.180000e-126 460.0
13 TraesCS3B01G586700 chr3B 87.302 378 39 4 1823 2197 818052018 818051647 8.110000e-115 424.0
14 TraesCS3B01G586700 chr3B 86.935 199 23 2 1388 1585 813267011 813266815 1.140000e-53 220.0
15 TraesCS3B01G586700 chr3B 94.444 54 3 0 1 54 809062024 809061971 1.560000e-12 84.2
16 TraesCS3B01G586700 chr3B 91.667 60 0 1 364 423 809059610 809059556 7.270000e-11 78.7
17 TraesCS3B01G586700 chr3B 90.323 62 1 1 362 423 824380433 824380377 2.620000e-10 76.8
18 TraesCS3B01G586700 chrUn 86.847 1072 93 19 812 1839 364044718 364045785 0.000000e+00 1155.0
19 TraesCS3B01G586700 chrUn 88.933 750 55 6 1193 1942 380530548 380529827 0.000000e+00 900.0
20 TraesCS3B01G586700 chrUn 88.661 732 45 15 776 1471 232147738 232147009 0.000000e+00 857.0
21 TraesCS3B01G586700 chrUn 88.661 732 45 15 776 1471 291110909 291111638 0.000000e+00 857.0
22 TraesCS3B01G586700 chrUn 87.171 608 51 5 1193 1800 342673372 342672792 0.000000e+00 665.0
23 TraesCS3B01G586700 chrUn 87.171 608 51 5 1193 1800 473078030 473077450 0.000000e+00 665.0
24 TraesCS3B01G586700 chrUn 94.575 424 17 4 1 423 232153184 232152766 0.000000e+00 651.0
25 TraesCS3B01G586700 chrUn 94.575 424 17 4 1 423 237972223 237971805 0.000000e+00 651.0
26 TraesCS3B01G586700 chrUn 86.162 542 48 8 682 1200 342674377 342673840 5.920000e-156 560.0
27 TraesCS3B01G586700 chrUn 85.688 545 51 8 679 1200 388617868 388618408 1.280000e-152 549.0
28 TraesCS3B01G586700 chrUn 86.957 299 39 0 1541 1839 430928045 430928343 1.090000e-88 337.0
29 TraesCS3B01G586700 chrUn 92.571 175 12 1 604 778 232152768 232152595 1.460000e-62 250.0
30 TraesCS3B01G586700 chrUn 92.571 175 12 1 604 778 237971807 237971634 1.460000e-62 250.0
31 TraesCS3B01G586700 chrUn 80.569 211 34 5 1908 2113 96321917 96321709 3.270000e-34 156.0
32 TraesCS3B01G586700 chr7B 91.192 193 15 2 421 611 657200458 657200650 6.730000e-66 261.0
33 TraesCS3B01G586700 chr1D 91.579 190 14 2 419 606 93501171 93500982 6.730000e-66 261.0
34 TraesCS3B01G586700 chr1D 78.986 276 53 5 2178 2450 317321269 317320996 1.500000e-42 183.0
35 TraesCS3B01G586700 chr5B 91.192 193 14 3 421 610 2812595 2812403 2.420000e-65 259.0
36 TraesCS3B01G586700 chr5B 92.350 183 13 1 422 603 214123324 214123506 2.420000e-65 259.0
37 TraesCS3B01G586700 chr5B 83.212 274 43 3 2178 2450 575775439 575775710 5.240000e-62 248.0
38 TraesCS3B01G586700 chr6D 91.099 191 15 2 418 606 11192754 11192944 8.700000e-65 257.0
39 TraesCS3B01G586700 chr6D 90.576 191 16 2 421 609 335300553 335300363 4.050000e-63 252.0
40 TraesCS3B01G586700 chr2D 91.489 188 14 2 421 606 26038967 26038780 8.700000e-65 257.0
41 TraesCS3B01G586700 chr6B 91.053 190 15 2 423 610 33072964 33072775 3.130000e-64 255.0
42 TraesCS3B01G586700 chr3D 91.489 188 12 3 421 606 511346620 511346435 3.130000e-64 255.0
43 TraesCS3B01G586700 chr3D 78.369 282 56 5 2172 2450 157787110 157787389 6.970000e-41 178.0
44 TraesCS3B01G586700 chr4B 82.847 274 45 2 2178 2450 407383329 407383601 6.780000e-61 244.0
45 TraesCS3B01G586700 chr2A 79.927 274 53 2 2178 2450 683625519 683625247 1.490000e-47 200.0
46 TraesCS3B01G586700 chr7A 78.594 313 53 13 1891 2197 85091125 85090821 6.920000e-46 195.0
47 TraesCS3B01G586700 chr1A 78.086 324 54 11 1878 2197 560444760 560445070 3.220000e-44 189.0
48 TraesCS3B01G586700 chr1A 78.623 276 54 5 2178 2450 39440705 39440432 6.970000e-41 178.0
49 TraesCS3B01G586700 chr1A 77.551 294 51 12 1909 2197 479825636 479825919 1.950000e-36 163.0
50 TraesCS3B01G586700 chr5A 76.780 323 62 8 1878 2197 32163959 32164271 4.200000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G586700 chr3B 813305816 813308268 2452 True 4530.000000 4530 100.000000 1 2453 1 chr3B.!!$R4 2452
1 TraesCS3B01G586700 chr3B 788510226 788511999 1773 False 2322.000000 2322 90.312000 605 2388 1 chr3B.!!$F1 1783
2 TraesCS3B01G586700 chr3B 27486419 27487922 1503 True 1967.000000 1967 90.217000 933 2452 1 chr3B.!!$R1 1519
3 TraesCS3B01G586700 chr3B 788405339 788406586 1247 True 1506.000000 1506 88.721000 605 1839 1 chr3B.!!$R3 1234
4 TraesCS3B01G586700 chr3B 825571855 825572727 872 True 1053.000000 1053 88.739000 605 1471 1 chr3B.!!$R6 866
5 TraesCS3B01G586700 chr3B 825544862 825545785 923 True 985.000000 985 86.310000 1542 2452 1 chr3B.!!$R5 910
6 TraesCS3B01G586700 chr3B 818051647 818053277 1630 True 959.500000 1495 88.689000 605 2197 2 chr3B.!!$R9 1592
7 TraesCS3B01G586700 chr3B 809058300 809062024 3724 True 580.225000 1698 93.298000 1 1842 4 chr3B.!!$R7 1841
8 TraesCS3B01G586700 chr3B 824379415 824380764 1349 True 526.933333 953 91.575333 1 1607 3 chr3B.!!$R10 1606
9 TraesCS3B01G586700 chr3B 813266815 813269809 2994 True 419.500000 619 86.359500 605 1585 2 chr3B.!!$R8 980
10 TraesCS3B01G586700 chrUn 364044718 364045785 1067 False 1155.000000 1155 86.847000 812 1839 1 chrUn.!!$F2 1027
11 TraesCS3B01G586700 chrUn 380529827 380530548 721 True 900.000000 900 88.933000 1193 1942 1 chrUn.!!$R3 749
12 TraesCS3B01G586700 chrUn 232147009 232147738 729 True 857.000000 857 88.661000 776 1471 1 chrUn.!!$R2 695
13 TraesCS3B01G586700 chrUn 291110909 291111638 729 False 857.000000 857 88.661000 776 1471 1 chrUn.!!$F1 695
14 TraesCS3B01G586700 chrUn 473077450 473078030 580 True 665.000000 665 87.171000 1193 1800 1 chrUn.!!$R4 607
15 TraesCS3B01G586700 chrUn 342672792 342674377 1585 True 612.500000 665 86.666500 682 1800 2 chrUn.!!$R7 1118
16 TraesCS3B01G586700 chrUn 388617868 388618408 540 False 549.000000 549 85.688000 679 1200 1 chrUn.!!$F3 521
17 TraesCS3B01G586700 chrUn 232152595 232153184 589 True 450.500000 651 93.573000 1 778 2 chrUn.!!$R5 777
18 TraesCS3B01G586700 chrUn 237971634 237972223 589 True 450.500000 651 93.573000 1 778 2 chrUn.!!$R6 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 2631 0.033405 CCTCCCGTCTGGTTCCTAGA 60.033 60.0 0.0 0.0 34.77 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 6892 0.45826 ACGTTTGCAAAGTTCACCCC 59.542 50.0 13.26 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 4.565166 CGATGTGTTTTCCTATACGAGCAA 59.435 41.667 0.00 0.00 0.00 3.91
336 338 5.088739 GTCAAATTGCAGTTAGATGTTCGG 58.911 41.667 0.00 0.00 0.00 4.30
423 2511 1.394917 GCATCACGCTGGTTGAGTAAG 59.605 52.381 0.00 0.00 37.77 2.34
424 2512 2.002586 CATCACGCTGGTTGAGTAAGG 58.997 52.381 0.00 0.00 0.00 2.69
425 2513 0.320374 TCACGCTGGTTGAGTAAGGG 59.680 55.000 0.00 0.00 0.00 3.95
426 2514 0.673644 CACGCTGGTTGAGTAAGGGG 60.674 60.000 0.00 0.00 0.00 4.79
427 2515 1.078426 CGCTGGTTGAGTAAGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
428 2516 1.838073 CGCTGGTTGAGTAAGGGGGT 61.838 60.000 0.00 0.00 0.00 4.95
429 2517 0.322546 GCTGGTTGAGTAAGGGGGTG 60.323 60.000 0.00 0.00 0.00 4.61
430 2518 1.064825 CTGGTTGAGTAAGGGGGTGT 58.935 55.000 0.00 0.00 0.00 4.16
431 2519 1.423921 CTGGTTGAGTAAGGGGGTGTT 59.576 52.381 0.00 0.00 0.00 3.32
432 2520 1.854280 TGGTTGAGTAAGGGGGTGTTT 59.146 47.619 0.00 0.00 0.00 2.83
433 2521 2.235891 GGTTGAGTAAGGGGGTGTTTG 58.764 52.381 0.00 0.00 0.00 2.93
434 2522 2.235891 GTTGAGTAAGGGGGTGTTTGG 58.764 52.381 0.00 0.00 0.00 3.28
435 2523 1.525175 TGAGTAAGGGGGTGTTTGGT 58.475 50.000 0.00 0.00 0.00 3.67
436 2524 1.854280 TGAGTAAGGGGGTGTTTGGTT 59.146 47.619 0.00 0.00 0.00 3.67
437 2525 2.158579 TGAGTAAGGGGGTGTTTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
438 2526 1.854280 AGTAAGGGGGTGTTTGGTTCA 59.146 47.619 0.00 0.00 0.00 3.18
439 2527 2.158519 AGTAAGGGGGTGTTTGGTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
440 2528 0.930726 AAGGGGGTGTTTGGTTCAGA 59.069 50.000 0.00 0.00 0.00 3.27
441 2529 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
442 2530 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
443 2531 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
444 2532 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
445 2533 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
446 2534 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
447 2535 3.288092 GGTGTTTGGTTCAGAAGTCCTT 58.712 45.455 0.00 0.00 0.00 3.36
448 2536 3.066760 GGTGTTTGGTTCAGAAGTCCTTG 59.933 47.826 0.00 0.00 0.00 3.61
449 2537 3.066760 GTGTTTGGTTCAGAAGTCCTTGG 59.933 47.826 0.00 0.00 0.00 3.61
450 2538 3.053991 TGTTTGGTTCAGAAGTCCTTGGA 60.054 43.478 0.00 0.00 0.00 3.53
451 2539 2.930826 TGGTTCAGAAGTCCTTGGAC 57.069 50.000 11.59 11.59 0.00 4.02
452 2540 2.408565 TGGTTCAGAAGTCCTTGGACT 58.591 47.619 15.93 15.93 36.92 3.85
453 2541 2.777692 TGGTTCAGAAGTCCTTGGACTT 59.222 45.455 28.80 28.80 46.86 3.01
454 2542 3.202151 TGGTTCAGAAGTCCTTGGACTTT 59.798 43.478 28.95 18.59 44.53 2.66
455 2543 4.207955 GGTTCAGAAGTCCTTGGACTTTT 58.792 43.478 28.95 22.94 44.53 2.27
456 2544 4.645136 GGTTCAGAAGTCCTTGGACTTTTT 59.355 41.667 28.95 19.93 44.53 1.94
457 2545 5.221067 GGTTCAGAAGTCCTTGGACTTTTTC 60.221 44.000 28.95 19.59 44.53 2.29
458 2546 5.373812 TCAGAAGTCCTTGGACTTTTTCT 57.626 39.130 28.95 21.14 44.53 2.52
459 2547 6.494666 TCAGAAGTCCTTGGACTTTTTCTA 57.505 37.500 28.95 14.66 44.53 2.10
460 2548 6.525629 TCAGAAGTCCTTGGACTTTTTCTAG 58.474 40.000 28.95 17.95 44.53 2.43
461 2549 6.099845 TCAGAAGTCCTTGGACTTTTTCTAGT 59.900 38.462 28.95 10.50 44.53 2.57
462 2550 6.425417 CAGAAGTCCTTGGACTTTTTCTAGTC 59.575 42.308 28.95 17.24 44.53 2.59
474 2562 8.397215 GACTTTTTCTAGTCCGAGAACTAATC 57.603 38.462 0.00 0.00 38.88 1.75
475 2563 7.893658 ACTTTTTCTAGTCCGAGAACTAATCA 58.106 34.615 0.00 0.00 35.17 2.57
476 2564 8.365647 ACTTTTTCTAGTCCGAGAACTAATCAA 58.634 33.333 0.00 0.00 35.17 2.57
477 2565 9.204570 CTTTTTCTAGTCCGAGAACTAATCAAA 57.795 33.333 0.00 0.00 35.17 2.69
478 2566 9.550406 TTTTTCTAGTCCGAGAACTAATCAAAA 57.450 29.630 0.00 0.00 35.17 2.44
479 2567 9.550406 TTTTCTAGTCCGAGAACTAATCAAAAA 57.450 29.630 0.00 0.00 35.17 1.94
504 2592 6.987403 AAGTCTCCAGTAGAGTCTTTTTCT 57.013 37.500 0.00 0.00 45.17 2.52
506 2594 7.696992 AGTCTCCAGTAGAGTCTTTTTCTAG 57.303 40.000 0.00 0.00 43.71 2.43
507 2595 7.235804 AGTCTCCAGTAGAGTCTTTTTCTAGT 58.764 38.462 0.00 0.00 43.71 2.57
508 2596 7.392393 AGTCTCCAGTAGAGTCTTTTTCTAGTC 59.608 40.741 0.00 0.00 43.71 2.59
509 2597 6.660094 TCTCCAGTAGAGTCTTTTTCTAGTCC 59.340 42.308 0.00 0.00 43.71 3.85
510 2598 5.715753 TCCAGTAGAGTCTTTTTCTAGTCCC 59.284 44.000 0.00 0.00 30.30 4.46
511 2599 5.717654 CCAGTAGAGTCTTTTTCTAGTCCCT 59.282 44.000 0.00 0.00 30.30 4.20
512 2600 6.350612 CCAGTAGAGTCTTTTTCTAGTCCCTG 60.351 46.154 0.00 0.00 30.30 4.45
513 2601 6.209788 CAGTAGAGTCTTTTTCTAGTCCCTGT 59.790 42.308 0.00 0.00 30.30 4.00
514 2602 7.393796 CAGTAGAGTCTTTTTCTAGTCCCTGTA 59.606 40.741 0.00 0.00 30.30 2.74
515 2603 6.593268 AGAGTCTTTTTCTAGTCCCTGTAC 57.407 41.667 0.00 0.00 0.00 2.90
516 2604 6.075984 AGAGTCTTTTTCTAGTCCCTGTACA 58.924 40.000 0.00 0.00 0.00 2.90
517 2605 6.553852 AGAGTCTTTTTCTAGTCCCTGTACAA 59.446 38.462 0.00 0.00 0.00 2.41
518 2606 7.070821 AGAGTCTTTTTCTAGTCCCTGTACAAA 59.929 37.037 0.00 0.00 0.00 2.83
519 2607 7.571025 AGTCTTTTTCTAGTCCCTGTACAAAA 58.429 34.615 0.00 0.00 0.00 2.44
520 2608 8.050930 AGTCTTTTTCTAGTCCCTGTACAAAAA 58.949 33.333 0.00 0.00 0.00 1.94
535 2623 3.978876 AAAAATCCCTCCCGTCTGG 57.021 52.632 0.00 0.00 0.00 3.86
536 2624 1.073098 AAAAATCCCTCCCGTCTGGT 58.927 50.000 0.00 0.00 34.77 4.00
537 2625 1.073098 AAAATCCCTCCCGTCTGGTT 58.927 50.000 0.00 0.00 34.77 3.67
538 2626 0.618981 AAATCCCTCCCGTCTGGTTC 59.381 55.000 0.00 0.00 34.77 3.62
539 2627 1.272554 AATCCCTCCCGTCTGGTTCC 61.273 60.000 0.00 0.00 34.77 3.62
540 2628 2.182858 ATCCCTCCCGTCTGGTTCCT 62.183 60.000 0.00 0.00 34.77 3.36
541 2629 1.001248 CCCTCCCGTCTGGTTCCTA 59.999 63.158 0.00 0.00 34.77 2.94
542 2630 1.043673 CCCTCCCGTCTGGTTCCTAG 61.044 65.000 0.00 0.00 34.77 3.02
543 2631 0.033405 CCTCCCGTCTGGTTCCTAGA 60.033 60.000 0.00 0.00 34.77 2.43
544 2632 1.394618 CTCCCGTCTGGTTCCTAGAG 58.605 60.000 0.00 0.00 34.77 2.43
545 2633 0.997363 TCCCGTCTGGTTCCTAGAGA 59.003 55.000 0.00 0.00 34.77 3.10
546 2634 1.104630 CCCGTCTGGTTCCTAGAGAC 58.895 60.000 0.00 0.00 34.04 3.36
547 2635 1.616187 CCCGTCTGGTTCCTAGAGACA 60.616 57.143 8.70 0.00 36.67 3.41
548 2636 2.379972 CCGTCTGGTTCCTAGAGACAT 58.620 52.381 8.70 0.00 36.67 3.06
549 2637 2.761208 CCGTCTGGTTCCTAGAGACATT 59.239 50.000 8.70 0.00 36.67 2.71
550 2638 3.195825 CCGTCTGGTTCCTAGAGACATTT 59.804 47.826 8.70 0.00 36.67 2.32
551 2639 4.322801 CCGTCTGGTTCCTAGAGACATTTT 60.323 45.833 8.70 0.00 36.67 1.82
552 2640 5.105473 CCGTCTGGTTCCTAGAGACATTTTA 60.105 44.000 8.70 0.00 36.67 1.52
553 2641 6.037098 CGTCTGGTTCCTAGAGACATTTTAG 58.963 44.000 8.70 0.00 36.67 1.85
554 2642 6.342111 GTCTGGTTCCTAGAGACATTTTAGG 58.658 44.000 4.15 0.00 36.83 2.69
555 2643 5.425539 TCTGGTTCCTAGAGACATTTTAGGG 59.574 44.000 0.00 0.00 35.67 3.53
556 2644 5.347124 TGGTTCCTAGAGACATTTTAGGGA 58.653 41.667 0.00 0.00 35.67 4.20
557 2645 5.189145 TGGTTCCTAGAGACATTTTAGGGAC 59.811 44.000 0.00 0.45 40.79 4.46
558 2646 5.425862 GGTTCCTAGAGACATTTTAGGGACT 59.574 44.000 7.85 0.00 41.13 3.85
559 2647 6.070136 GGTTCCTAGAGACATTTTAGGGACTT 60.070 42.308 7.85 0.00 41.13 3.01
560 2648 7.395617 GTTCCTAGAGACATTTTAGGGACTTT 58.604 38.462 0.00 0.00 39.17 2.66
561 2649 7.569599 TCCTAGAGACATTTTAGGGACTTTT 57.430 36.000 0.00 0.00 41.75 2.27
562 2650 7.985589 TCCTAGAGACATTTTAGGGACTTTTT 58.014 34.615 0.00 0.00 41.75 1.94
563 2651 8.101419 TCCTAGAGACATTTTAGGGACTTTTTC 58.899 37.037 0.00 0.00 41.75 2.29
564 2652 8.103935 CCTAGAGACATTTTAGGGACTTTTTCT 58.896 37.037 0.00 0.00 41.75 2.52
567 2655 8.661345 AGAGACATTTTAGGGACTTTTTCTAGT 58.339 33.333 0.00 0.00 41.75 2.57
568 2656 8.850007 AGACATTTTAGGGACTTTTTCTAGTC 57.150 34.615 0.00 0.00 43.05 2.59
569 2657 8.661345 AGACATTTTAGGGACTTTTTCTAGTCT 58.339 33.333 0.00 0.00 43.26 3.24
570 2658 8.850007 ACATTTTAGGGACTTTTTCTAGTCTC 57.150 34.615 0.00 0.00 44.42 3.36
576 2664 6.211587 GGGACTTTTTCTAGTCTCTAGGAC 57.788 45.833 0.00 3.84 41.50 3.85
592 2680 9.844790 GTCTCTAGGACTAAAAAGTCTCTAAAC 57.155 37.037 5.59 2.45 41.46 2.01
593 2681 9.022884 TCTCTAGGACTAAAAAGTCTCTAAACC 57.977 37.037 5.59 0.00 38.74 3.27
594 2682 8.716674 TCTAGGACTAAAAAGTCTCTAAACCA 57.283 34.615 5.59 0.00 38.74 3.67
595 2683 9.151177 TCTAGGACTAAAAAGTCTCTAAACCAA 57.849 33.333 5.59 0.00 38.74 3.67
596 2684 9.774413 CTAGGACTAAAAAGTCTCTAAACCAAA 57.226 33.333 5.59 0.00 38.74 3.28
597 2685 8.447924 AGGACTAAAAAGTCTCTAAACCAAAC 57.552 34.615 5.59 0.00 38.74 2.93
598 2686 8.050930 AGGACTAAAAAGTCTCTAAACCAAACA 58.949 33.333 5.59 0.00 38.74 2.83
599 2687 8.127327 GGACTAAAAAGTCTCTAAACCAAACAC 58.873 37.037 5.59 0.00 38.74 3.32
600 2688 7.993101 ACTAAAAAGTCTCTAAACCAAACACC 58.007 34.615 0.00 0.00 0.00 4.16
601 2689 5.847111 AAAAGTCTCTAAACCAAACACCC 57.153 39.130 0.00 0.00 0.00 4.61
602 2690 3.503800 AGTCTCTAAACCAAACACCCC 57.496 47.619 0.00 0.00 0.00 4.95
603 2691 3.053826 AGTCTCTAAACCAAACACCCCT 58.946 45.455 0.00 0.00 0.00 4.79
604 2692 4.237018 AGTCTCTAAACCAAACACCCCTA 58.763 43.478 0.00 0.00 0.00 3.53
605 2693 4.661709 AGTCTCTAAACCAAACACCCCTAA 59.338 41.667 0.00 0.00 0.00 2.69
626 2715 2.150397 ATACGCAGAATAACTCGGGC 57.850 50.000 0.00 0.00 0.00 6.13
818 2907 1.734655 TTCTCACCCTCTTTGCTCCT 58.265 50.000 0.00 0.00 0.00 3.69
834 2923 2.356125 GCTCCTGAGGTAAGCATTCCAA 60.356 50.000 7.26 0.00 36.06 3.53
870 2969 5.173312 ACAATTTCTCATATAGTTCGCGTCG 59.827 40.000 5.77 0.00 0.00 5.12
957 3079 1.145598 ATCTCCCGAGCGTCGAGTA 59.854 57.895 0.00 0.00 43.74 2.59
1623 6376 2.088423 TGCCGGATTTTAAATCGCAGT 58.912 42.857 5.05 0.00 0.00 4.40
1638 6391 1.253800 CGCAGTCGATGAGAAATGTCG 59.746 52.381 0.00 0.00 38.10 4.35
1657 6410 2.693762 GCTCGCTTTGCATGGCTCA 61.694 57.895 9.22 0.00 0.00 4.26
1672 6425 8.462589 TGCATGGCTCATTAAATCATAGTAAA 57.537 30.769 0.00 0.00 0.00 2.01
1733 6486 4.759516 TCTAAACGGACAAAGATTTGGC 57.240 40.909 9.91 6.43 45.50 4.52
1743 6496 4.020543 ACAAAGATTTGGCCCGCTATTTA 58.979 39.130 0.00 0.00 42.34 1.40
1765 6518 2.041081 TCCGTTTGGAATGGTTGGAGAT 59.959 45.455 0.00 0.00 42.85 2.75
1800 6553 2.658285 CATCTGCCCAAATCTAGCCAA 58.342 47.619 0.00 0.00 0.00 4.52
1814 6567 2.990967 CCAATGCGCCCAACTGGT 60.991 61.111 4.18 0.00 36.04 4.00
1985 6781 9.469807 AATTTTAATTGTCGCAAGTACATTGAA 57.530 25.926 8.63 0.00 41.83 2.69
1986 6782 8.500837 TTTTAATTGTCGCAAGTACATTGAAG 57.499 30.769 8.63 3.35 41.83 3.02
1997 6793 5.966742 AGTACATTGAAGGAAAAAGAGCC 57.033 39.130 0.00 0.00 0.00 4.70
2007 6803 4.962155 AGGAAAAAGAGCCGGTATATCTG 58.038 43.478 1.90 0.00 0.00 2.90
2014 6810 3.069729 AGAGCCGGTATATCTGTTGGTTC 59.930 47.826 1.90 0.00 0.00 3.62
2035 6833 5.612725 TCACAATGAGTCCACATATGCTA 57.387 39.130 1.58 0.00 0.00 3.49
2065 6863 9.853921 CAAATTATTTTGAAGTTGAAAGTGAGC 57.146 29.630 4.42 0.00 44.11 4.26
2077 6875 4.388485 TGAAAGTGAGCTGCTTAATCACA 58.612 39.130 18.20 8.90 44.59 3.58
2120 6938 5.038033 GTGAACTTTGCAAACGTTAATGGA 58.962 37.500 19.91 0.00 0.00 3.41
2137 6960 2.497138 TGGACATGCTCAACTCAACTG 58.503 47.619 0.00 0.00 0.00 3.16
2219 7043 6.092807 CCTTTGCAAGTACTGAAATAGAGGTC 59.907 42.308 0.00 0.00 0.00 3.85
2268 7092 6.173191 TCTTAACAAGTAACAATTAGCGCC 57.827 37.500 2.29 0.00 0.00 6.53
2335 7165 5.843019 AGGACAAATTGGGAAGTTCTCTA 57.157 39.130 3.98 0.00 0.00 2.43
2340 7170 8.678199 GGACAAATTGGGAAGTTCTCTAATAAG 58.322 37.037 3.98 3.45 0.00 1.73
2367 7197 3.735237 AGTGTTCTCGAAGACACATGT 57.265 42.857 24.42 0.00 37.08 3.21
2375 7205 4.857037 TCTCGAAGACACATGTGAATTACG 59.143 41.667 31.94 24.96 0.00 3.18
2379 7209 4.265904 AGACACATGTGAATTACGGTCA 57.734 40.909 31.94 0.00 0.00 4.02
2385 7215 5.049749 CACATGTGAATTACGGTCAAGTCAA 60.050 40.000 21.64 0.00 34.62 3.18
2452 7282 3.239253 GTGGGTGGACCGGTGAGT 61.239 66.667 14.63 0.00 44.64 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.854614 ATTACTATGGGAAAATGCATACTCTC 57.145 34.615 0.00 0.00 0.00 3.20
146 147 2.107204 AGCCAGGTTGAGTCTTTCACAT 59.893 45.455 0.00 0.00 34.94 3.21
423 2511 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
424 2512 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
425 2513 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
426 2514 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
427 2515 3.066760 CCAAGGACTTCTGAACCAAACAC 59.933 47.826 0.58 0.00 0.00 3.32
428 2516 3.053991 TCCAAGGACTTCTGAACCAAACA 60.054 43.478 0.58 0.00 0.00 2.83
429 2517 3.315470 GTCCAAGGACTTCTGAACCAAAC 59.685 47.826 11.94 0.00 41.57 2.93
430 2518 3.551846 GTCCAAGGACTTCTGAACCAAA 58.448 45.455 11.94 0.00 41.57 3.28
431 2519 3.208747 GTCCAAGGACTTCTGAACCAA 57.791 47.619 11.94 0.00 41.57 3.67
432 2520 2.930826 GTCCAAGGACTTCTGAACCA 57.069 50.000 11.94 0.00 41.57 3.67
449 2537 8.027771 TGATTAGTTCTCGGACTAGAAAAAGTC 58.972 37.037 0.00 0.00 44.31 3.01
450 2538 7.893658 TGATTAGTTCTCGGACTAGAAAAAGT 58.106 34.615 0.00 0.00 37.24 2.66
451 2539 8.758633 TTGATTAGTTCTCGGACTAGAAAAAG 57.241 34.615 0.00 0.00 37.24 2.27
452 2540 9.550406 TTTTGATTAGTTCTCGGACTAGAAAAA 57.450 29.630 0.00 0.00 37.24 1.94
453 2541 9.550406 TTTTTGATTAGTTCTCGGACTAGAAAA 57.450 29.630 0.00 0.00 37.24 2.29
482 2570 7.235804 ACTAGAAAAAGACTCTACTGGAGACT 58.764 38.462 0.00 0.00 45.91 3.24
483 2571 7.362315 GGACTAGAAAAAGACTCTACTGGAGAC 60.362 44.444 0.00 0.00 44.45 3.36
484 2572 6.660094 GGACTAGAAAAAGACTCTACTGGAGA 59.340 42.308 0.00 0.00 44.45 3.71
485 2573 6.127563 GGGACTAGAAAAAGACTCTACTGGAG 60.128 46.154 0.00 0.00 46.87 3.86
486 2574 5.715753 GGGACTAGAAAAAGACTCTACTGGA 59.284 44.000 0.00 0.00 0.00 3.86
487 2575 5.717654 AGGGACTAGAAAAAGACTCTACTGG 59.282 44.000 0.00 0.00 36.02 4.00
488 2576 6.209788 ACAGGGACTAGAAAAAGACTCTACTG 59.790 42.308 0.00 0.00 36.02 2.74
489 2577 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
490 2578 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
491 2579 7.236529 TGTACAGGGACTAGAAAAAGACTCTA 58.763 38.462 0.00 0.00 36.02 2.43
492 2580 6.075984 TGTACAGGGACTAGAAAAAGACTCT 58.924 40.000 0.00 0.00 36.02 3.24
493 2581 6.342338 TGTACAGGGACTAGAAAAAGACTC 57.658 41.667 0.00 0.00 36.02 3.36
494 2582 6.742559 TTGTACAGGGACTAGAAAAAGACT 57.257 37.500 0.00 0.00 36.02 3.24
495 2583 7.797038 TTTTGTACAGGGACTAGAAAAAGAC 57.203 36.000 0.00 0.00 36.02 3.01
517 2605 1.073098 ACCAGACGGGAGGGATTTTT 58.927 50.000 0.00 0.00 41.15 1.94
518 2606 1.004394 GAACCAGACGGGAGGGATTTT 59.996 52.381 0.00 0.00 41.15 1.82
519 2607 0.618981 GAACCAGACGGGAGGGATTT 59.381 55.000 0.00 0.00 41.15 2.17
520 2608 1.272554 GGAACCAGACGGGAGGGATT 61.273 60.000 0.00 0.00 41.15 3.01
521 2609 1.689582 GGAACCAGACGGGAGGGAT 60.690 63.158 0.00 0.00 41.15 3.85
522 2610 1.512201 TAGGAACCAGACGGGAGGGA 61.512 60.000 0.00 0.00 41.15 4.20
523 2611 1.001248 TAGGAACCAGACGGGAGGG 59.999 63.158 0.00 0.00 41.15 4.30
524 2612 0.033405 TCTAGGAACCAGACGGGAGG 60.033 60.000 0.00 0.00 41.15 4.30
525 2613 1.064611 TCTCTAGGAACCAGACGGGAG 60.065 57.143 0.00 0.00 41.15 4.30
526 2614 0.997363 TCTCTAGGAACCAGACGGGA 59.003 55.000 0.00 0.00 41.15 5.14
527 2615 1.104630 GTCTCTAGGAACCAGACGGG 58.895 60.000 0.00 0.00 44.81 5.28
528 2616 1.835494 TGTCTCTAGGAACCAGACGG 58.165 55.000 4.59 0.00 39.63 4.79
529 2617 4.457834 AAATGTCTCTAGGAACCAGACG 57.542 45.455 4.59 0.00 39.63 4.18
530 2618 6.342111 CCTAAAATGTCTCTAGGAACCAGAC 58.658 44.000 2.35 2.35 35.17 3.51
531 2619 5.425539 CCCTAAAATGTCTCTAGGAACCAGA 59.574 44.000 0.00 0.00 35.17 3.86
532 2620 5.425539 TCCCTAAAATGTCTCTAGGAACCAG 59.574 44.000 0.00 0.00 35.17 4.00
533 2621 5.189145 GTCCCTAAAATGTCTCTAGGAACCA 59.811 44.000 0.00 0.00 35.17 3.67
534 2622 5.425862 AGTCCCTAAAATGTCTCTAGGAACC 59.574 44.000 0.00 0.00 35.17 3.62
535 2623 6.547930 AGTCCCTAAAATGTCTCTAGGAAC 57.452 41.667 0.00 0.00 35.17 3.62
536 2624 7.569599 AAAGTCCCTAAAATGTCTCTAGGAA 57.430 36.000 0.00 0.00 35.17 3.36
537 2625 7.569599 AAAAGTCCCTAAAATGTCTCTAGGA 57.430 36.000 0.00 0.00 35.17 2.94
538 2626 8.103935 AGAAAAAGTCCCTAAAATGTCTCTAGG 58.896 37.037 0.00 0.00 33.30 3.02
541 2629 8.661345 ACTAGAAAAAGTCCCTAAAATGTCTCT 58.339 33.333 0.00 0.00 0.00 3.10
542 2630 8.850007 ACTAGAAAAAGTCCCTAAAATGTCTC 57.150 34.615 0.00 0.00 0.00 3.36
543 2631 8.661345 AGACTAGAAAAAGTCCCTAAAATGTCT 58.339 33.333 0.00 0.00 45.86 3.41
544 2632 8.850007 AGACTAGAAAAAGTCCCTAAAATGTC 57.150 34.615 0.00 0.00 45.86 3.06
545 2633 8.661345 AGAGACTAGAAAAAGTCCCTAAAATGT 58.339 33.333 0.00 0.00 45.86 2.71
548 2636 8.813951 CCTAGAGACTAGAAAAAGTCCCTAAAA 58.186 37.037 0.00 0.00 45.86 1.52
549 2637 8.175431 TCCTAGAGACTAGAAAAAGTCCCTAAA 58.825 37.037 0.00 0.00 45.86 1.85
550 2638 7.614974 GTCCTAGAGACTAGAAAAAGTCCCTAA 59.385 40.741 0.00 0.00 45.86 2.69
551 2639 7.118060 GTCCTAGAGACTAGAAAAAGTCCCTA 58.882 42.308 0.00 0.00 45.86 3.53
552 2640 5.953548 GTCCTAGAGACTAGAAAAAGTCCCT 59.046 44.000 0.00 0.00 45.86 4.20
553 2641 6.211587 GTCCTAGAGACTAGAAAAAGTCCC 57.788 45.833 0.00 0.00 45.86 4.46
566 2654 9.844790 GTTTAGAGACTTTTTAGTCCTAGAGAC 57.155 37.037 1.88 0.00 46.71 3.36
567 2655 9.022884 GGTTTAGAGACTTTTTAGTCCTAGAGA 57.977 37.037 1.88 0.00 39.50 3.10
568 2656 8.804204 TGGTTTAGAGACTTTTTAGTCCTAGAG 58.196 37.037 1.88 0.00 39.50 2.43
569 2657 8.716674 TGGTTTAGAGACTTTTTAGTCCTAGA 57.283 34.615 1.88 0.00 39.50 2.43
570 2658 9.774413 TTTGGTTTAGAGACTTTTTAGTCCTAG 57.226 33.333 1.88 0.00 39.50 3.02
571 2659 9.551734 GTTTGGTTTAGAGACTTTTTAGTCCTA 57.448 33.333 1.88 1.82 39.50 2.94
572 2660 8.050930 TGTTTGGTTTAGAGACTTTTTAGTCCT 58.949 33.333 1.88 2.63 39.50 3.85
573 2661 8.127327 GTGTTTGGTTTAGAGACTTTTTAGTCC 58.873 37.037 1.88 0.00 39.50 3.85
574 2662 8.127327 GGTGTTTGGTTTAGAGACTTTTTAGTC 58.873 37.037 0.00 0.00 39.00 2.59
575 2663 7.067859 GGGTGTTTGGTTTAGAGACTTTTTAGT 59.932 37.037 0.00 0.00 0.00 2.24
576 2664 7.423199 GGGTGTTTGGTTTAGAGACTTTTTAG 58.577 38.462 0.00 0.00 0.00 1.85
577 2665 6.321945 GGGGTGTTTGGTTTAGAGACTTTTTA 59.678 38.462 0.00 0.00 0.00 1.52
578 2666 5.128171 GGGGTGTTTGGTTTAGAGACTTTTT 59.872 40.000 0.00 0.00 0.00 1.94
579 2667 4.647853 GGGGTGTTTGGTTTAGAGACTTTT 59.352 41.667 0.00 0.00 0.00 2.27
580 2668 4.079385 AGGGGTGTTTGGTTTAGAGACTTT 60.079 41.667 0.00 0.00 0.00 2.66
581 2669 3.462205 AGGGGTGTTTGGTTTAGAGACTT 59.538 43.478 0.00 0.00 0.00 3.01
582 2670 3.053826 AGGGGTGTTTGGTTTAGAGACT 58.946 45.455 0.00 0.00 0.00 3.24
583 2671 3.503800 AGGGGTGTTTGGTTTAGAGAC 57.496 47.619 0.00 0.00 0.00 3.36
584 2672 5.649970 TTTAGGGGTGTTTGGTTTAGAGA 57.350 39.130 0.00 0.00 0.00 3.10
585 2673 6.911250 ATTTTAGGGGTGTTTGGTTTAGAG 57.089 37.500 0.00 0.00 0.00 2.43
586 2674 6.430616 CGTATTTTAGGGGTGTTTGGTTTAGA 59.569 38.462 0.00 0.00 0.00 2.10
587 2675 6.614160 CGTATTTTAGGGGTGTTTGGTTTAG 58.386 40.000 0.00 0.00 0.00 1.85
588 2676 5.048154 GCGTATTTTAGGGGTGTTTGGTTTA 60.048 40.000 0.00 0.00 0.00 2.01
589 2677 4.262121 GCGTATTTTAGGGGTGTTTGGTTT 60.262 41.667 0.00 0.00 0.00 3.27
590 2678 3.256383 GCGTATTTTAGGGGTGTTTGGTT 59.744 43.478 0.00 0.00 0.00 3.67
591 2679 2.821378 GCGTATTTTAGGGGTGTTTGGT 59.179 45.455 0.00 0.00 0.00 3.67
592 2680 2.820787 TGCGTATTTTAGGGGTGTTTGG 59.179 45.455 0.00 0.00 0.00 3.28
593 2681 3.754323 TCTGCGTATTTTAGGGGTGTTTG 59.246 43.478 0.00 0.00 0.00 2.93
594 2682 4.023726 TCTGCGTATTTTAGGGGTGTTT 57.976 40.909 0.00 0.00 0.00 2.83
595 2683 3.706600 TCTGCGTATTTTAGGGGTGTT 57.293 42.857 0.00 0.00 0.00 3.32
596 2684 3.706600 TTCTGCGTATTTTAGGGGTGT 57.293 42.857 0.00 0.00 0.00 4.16
597 2685 5.820947 AGTTATTCTGCGTATTTTAGGGGTG 59.179 40.000 0.00 0.00 0.00 4.61
598 2686 5.997843 AGTTATTCTGCGTATTTTAGGGGT 58.002 37.500 0.00 0.00 0.00 4.95
599 2687 5.176958 CGAGTTATTCTGCGTATTTTAGGGG 59.823 44.000 0.00 0.00 0.00 4.79
600 2688 5.176958 CCGAGTTATTCTGCGTATTTTAGGG 59.823 44.000 0.00 0.00 0.00 3.53
601 2689 5.176958 CCCGAGTTATTCTGCGTATTTTAGG 59.823 44.000 0.00 0.00 0.00 2.69
602 2690 5.333111 GCCCGAGTTATTCTGCGTATTTTAG 60.333 44.000 0.00 0.00 0.00 1.85
603 2691 4.508861 GCCCGAGTTATTCTGCGTATTTTA 59.491 41.667 0.00 0.00 0.00 1.52
604 2692 3.311596 GCCCGAGTTATTCTGCGTATTTT 59.688 43.478 0.00 0.00 0.00 1.82
605 2693 2.870411 GCCCGAGTTATTCTGCGTATTT 59.130 45.455 0.00 0.00 0.00 1.40
626 2715 0.817634 TTCTTGGTCCAGTGCAACCG 60.818 55.000 0.99 0.00 38.45 4.44
818 2907 4.661222 TGTTCATTGGAATGCTTACCTCA 58.339 39.130 0.00 0.00 36.36 3.86
870 2969 1.282157 AGGGGCGGATTTATAGGCATC 59.718 52.381 0.00 0.00 0.00 3.91
957 3079 0.681733 TCGAAGCAAACTCTGGCTCT 59.318 50.000 0.00 0.00 40.01 4.09
1019 3141 3.339093 CCCCCTCCCTGTTCACCC 61.339 72.222 0.00 0.00 0.00 4.61
1134 3271 1.255667 GGTTGTAGCCGACCTCCTCA 61.256 60.000 0.00 0.00 41.39 3.86
1623 6376 1.533965 CGAGCCGACATTTCTCATCGA 60.534 52.381 0.00 0.00 38.10 3.59
1638 6391 3.407046 GAGCCATGCAAAGCGAGCC 62.407 63.158 5.75 0.00 0.00 4.70
1701 6454 1.067364 TCCGTTTAGATCGGCGCATTA 59.933 47.619 10.83 0.00 46.49 1.90
1704 6457 1.517694 GTCCGTTTAGATCGGCGCA 60.518 57.895 10.83 0.00 46.49 6.09
1724 6477 3.826729 GGATAAATAGCGGGCCAAATCTT 59.173 43.478 4.39 0.00 0.00 2.40
1733 6486 2.841215 TCCAAACGGATAAATAGCGGG 58.159 47.619 0.00 0.00 0.00 6.13
1743 6496 2.041081 TCTCCAACCATTCCAAACGGAT 59.959 45.455 0.00 0.00 30.78 4.18
1814 6567 5.076182 TGCATGAAAGTCTAAATGGGTTGA 58.924 37.500 0.00 0.00 0.00 3.18
1972 6768 5.631096 GCTCTTTTTCCTTCAATGTACTTGC 59.369 40.000 0.00 0.00 34.66 4.01
1985 6781 4.409247 ACAGATATACCGGCTCTTTTTCCT 59.591 41.667 0.00 0.00 0.00 3.36
1986 6782 4.704965 ACAGATATACCGGCTCTTTTTCC 58.295 43.478 0.00 0.00 0.00 3.13
1997 6793 5.815222 TCATTGTGAACCAACAGATATACCG 59.185 40.000 0.00 0.00 35.44 4.02
2007 6803 2.948979 TGTGGACTCATTGTGAACCAAC 59.051 45.455 0.00 0.00 35.70 3.77
2014 6810 6.682423 TTTAGCATATGTGGACTCATTGTG 57.318 37.500 4.29 0.00 0.00 3.33
2065 6863 7.977904 TCATACTGAAATGTGTGATTAAGCAG 58.022 34.615 0.00 0.00 34.09 4.24
2094 6892 0.458260 ACGTTTGCAAAGTTCACCCC 59.542 50.000 13.26 0.00 0.00 4.95
2120 6938 3.544684 TGTTCAGTTGAGTTGAGCATGT 58.455 40.909 0.00 0.00 32.00 3.21
2171 6994 5.977725 GGATGAGCATGATGAAAACATCTTG 59.022 40.000 16.34 16.34 38.79 3.02
2197 7020 5.932303 GTGACCTCTATTTCAGTACTTGCAA 59.068 40.000 0.00 0.00 0.00 4.08
2261 7085 2.147958 CACCTTTGTTACTGGCGCTAA 58.852 47.619 7.64 0.00 0.00 3.09
2268 7092 4.024048 CACCTTACTGCACCTTTGTTACTG 60.024 45.833 0.00 0.00 0.00 2.74
2322 7152 6.620877 TGCTTCTTATTAGAGAACTTCCCA 57.379 37.500 0.00 0.00 32.50 4.37
2325 7155 8.994170 ACACTTTGCTTCTTATTAGAGAACTTC 58.006 33.333 0.00 0.00 32.50 3.01
2335 7165 6.706270 TCTTCGAGAACACTTTGCTTCTTATT 59.294 34.615 0.00 0.00 0.00 1.40
2340 7170 3.555956 TGTCTTCGAGAACACTTTGCTTC 59.444 43.478 0.00 0.00 0.00 3.86
2367 7197 6.869315 TGAAATTGACTTGACCGTAATTCA 57.131 33.333 0.00 0.00 0.00 2.57
2375 7205 8.299570 ACTAAACATCATGAAATTGACTTGACC 58.700 33.333 0.00 0.00 0.00 4.02
2422 7252 5.534654 CGGTCCACCCACATATCAAATTATT 59.465 40.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.