Multiple sequence alignment - TraesCS3B01G586400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G586400 chr3B 100.000 3338 0 0 1 3338 812797723 812801060 0.000000e+00 6165
1 TraesCS3B01G586400 chr3B 79.175 970 167 25 1187 2133 812722292 812721335 1.010000e-179 640
2 TraesCS3B01G586400 chr3B 79.283 753 137 14 1415 2160 812726791 812726051 2.970000e-140 508
3 TraesCS3B01G586400 chr3B 92.623 244 12 3 1 239 159940245 159940003 2.470000e-91 346
4 TraesCS3B01G586400 chr3B 90.055 181 17 1 1160 1340 813902300 813902479 2.000000e-57 233
5 TraesCS3B01G586400 chr3B 76.129 465 79 18 2905 3338 548054169 548053706 7.250000e-52 215
6 TraesCS3B01G586400 chr3B 85.556 180 25 1 1166 1344 812727067 812726888 1.580000e-43 187
7 TraesCS3B01G586400 chr3B 83.832 167 22 5 3175 3338 811101206 811101042 1.600000e-33 154
8 TraesCS3B01G586400 chr3D 94.295 2261 100 12 1099 3338 605034326 605036578 0.000000e+00 3434
9 TraesCS3B01G586400 chr3D 90.703 839 44 12 251 1084 605033471 605034280 0.000000e+00 1086
10 TraesCS3B01G586400 chr3D 79.769 954 161 22 1187 2133 604968318 604967390 0.000000e+00 664
11 TraesCS3B01G586400 chr3D 88.636 176 20 0 1166 1341 605027070 605026895 7.250000e-52 215
12 TraesCS3B01G586400 chr3D 80.000 175 27 6 3005 3175 11319055 11318885 4.520000e-24 122
13 TraesCS3B01G586400 chrUn 81.423 759 136 5 1419 2175 46203765 46204520 1.700000e-172 616
14 TraesCS3B01G586400 chrUn 78.545 275 42 11 3079 3338 29856322 29856050 7.410000e-37 165
15 TraesCS3B01G586400 chr4D 80.822 730 130 9 1451 2175 485043041 485042317 6.250000e-157 564
16 TraesCS3B01G586400 chr4D 80.822 730 130 9 1451 2175 485064984 485064260 6.250000e-157 564
17 TraesCS3B01G586400 chr4D 90.997 311 25 3 2434 2744 205755377 205755070 1.850000e-112 416
18 TraesCS3B01G586400 chr3A 79.867 750 142 9 1415 2160 735981652 735980908 1.050000e-149 540
19 TraesCS3B01G586400 chr3A 79.683 758 133 16 1382 2133 735976151 735975409 8.200000e-146 527
20 TraesCS3B01G586400 chr3A 88.506 174 20 0 1167 1340 737180911 737181084 9.380000e-51 211
21 TraesCS3B01G586400 chr3A 86.705 173 14 6 1187 1352 735976319 735976149 2.050000e-42 183
22 TraesCS3B01G586400 chr3A 78.755 273 39 12 3084 3338 723574238 723573967 7.410000e-37 165
23 TraesCS3B01G586400 chr7B 92.568 296 19 3 2452 2744 374490496 374490201 3.980000e-114 422
24 TraesCS3B01G586400 chr7B 79.433 282 41 9 3069 3334 616688906 616689186 2.050000e-42 183
25 TraesCS3B01G586400 chr1A 90.323 310 28 2 2436 2744 472152342 472152650 4.010000e-109 405
26 TraesCS3B01G586400 chr1A 93.496 246 9 4 1 240 147698412 147698656 3.170000e-95 359
27 TraesCS3B01G586400 chr2D 91.156 294 24 2 2452 2744 59629621 59629329 6.710000e-107 398
28 TraesCS3B01G586400 chr2A 90.196 306 28 2 2441 2745 434863484 434863788 6.710000e-107 398
29 TraesCS3B01G586400 chr2A 89.677 310 32 0 2435 2744 27603489 27603798 2.410000e-106 396
30 TraesCS3B01G586400 chr2A 92.800 250 7 4 1 239 519352795 519352546 5.300000e-93 351
31 TraesCS3B01G586400 chr2A 92.623 244 9 2 1 239 686178252 686178013 3.190000e-90 342
32 TraesCS3B01G586400 chr6A 90.132 304 25 3 2442 2744 153519705 153519406 1.120000e-104 390
33 TraesCS3B01G586400 chr6A 89.902 307 26 3 2441 2747 435564006 435563705 1.120000e-104 390
34 TraesCS3B01G586400 chr6A 92.683 246 12 2 1 240 51391840 51391595 1.910000e-92 350
35 TraesCS3B01G586400 chr1B 93.902 246 8 3 1 240 667883553 667883797 6.810000e-97 364
36 TraesCS3B01G586400 chr1B 92.623 244 11 3 1 239 46007203 46006962 8.870000e-91 344
37 TraesCS3B01G586400 chr7A 94.215 242 7 3 1 237 633422408 633422647 2.450000e-96 363
38 TraesCS3B01G586400 chr6B 92.245 245 13 2 1 240 117890015 117890258 3.190000e-90 342
39 TraesCS3B01G586400 chr2B 79.070 387 53 16 2892 3253 373064065 373064448 1.200000e-59 241
40 TraesCS3B01G586400 chr2B 77.060 449 75 18 2892 3315 373090499 373090944 2.000000e-57 233
41 TraesCS3B01G586400 chr2B 78.445 283 37 17 2914 3176 768565741 768566019 2.660000e-36 163
42 TraesCS3B01G586400 chr7D 75.840 476 82 18 2892 3338 160655496 160655025 9.380000e-51 211
43 TraesCS3B01G586400 chr5A 75.372 471 85 15 2895 3338 567529960 567530426 7.300000e-47 198
44 TraesCS3B01G586400 chr5A 75.365 479 80 26 2892 3338 673835515 673835043 2.630000e-46 196
45 TraesCS3B01G586400 chr5A 76.289 291 56 10 2896 3174 520223939 520223650 3.470000e-30 143
46 TraesCS3B01G586400 chr4B 83.871 186 26 4 1165 1348 618252113 618251930 1.230000e-39 174
47 TraesCS3B01G586400 chr4B 82.447 188 25 5 1165 1348 618241452 618241269 1.240000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G586400 chr3B 812797723 812801060 3337 False 6165 6165 100.000 1 3338 1 chr3B.!!$F1 3337
1 TraesCS3B01G586400 chr3B 812721335 812727067 5732 True 445 640 81.338 1166 2160 3 chr3B.!!$R4 994
2 TraesCS3B01G586400 chr3D 605033471 605036578 3107 False 2260 3434 92.499 251 3338 2 chr3D.!!$F1 3087
3 TraesCS3B01G586400 chr3D 604967390 604968318 928 True 664 664 79.769 1187 2133 1 chr3D.!!$R2 946
4 TraesCS3B01G586400 chrUn 46203765 46204520 755 False 616 616 81.423 1419 2175 1 chrUn.!!$F1 756
5 TraesCS3B01G586400 chr4D 485042317 485043041 724 True 564 564 80.822 1451 2175 1 chr4D.!!$R2 724
6 TraesCS3B01G586400 chr4D 485064260 485064984 724 True 564 564 80.822 1451 2175 1 chr4D.!!$R3 724
7 TraesCS3B01G586400 chr3A 735980908 735981652 744 True 540 540 79.867 1415 2160 1 chr3A.!!$R2 745
8 TraesCS3B01G586400 chr3A 735975409 735976319 910 True 355 527 83.194 1187 2133 2 chr3A.!!$R3 946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 651 0.041833 TTCTGCCTAGCTGACTCCCT 59.958 55.0 0.0 0.0 36.32 4.20 F
1012 1013 0.035056 CCCTCCCAACTCACCATCAC 60.035 60.0 0.0 0.0 0.00 3.06 F
1021 1022 0.514255 CTCACCATCACAACTGCACG 59.486 55.0 0.0 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 6625 0.036306 GTGACGGTCAACCCTGGAAT 59.964 55.0 13.23 0.0 0.00 3.01 R
2042 6874 0.253044 ACCGGCATGTTAGCAGTCAT 59.747 50.0 0.00 0.0 35.83 3.06 R
2798 7637 0.888619 TCAAACAACACCAACGGCAA 59.111 45.0 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.403276 CGAAGGGACTGTCGACTTC 57.597 57.895 23.06 23.06 40.86 3.01
19 20 0.882474 CGAAGGGACTGTCGACTTCT 59.118 55.000 26.66 4.20 40.86 2.85
20 21 2.082231 CGAAGGGACTGTCGACTTCTA 58.918 52.381 26.66 0.00 40.86 2.10
21 22 2.159544 CGAAGGGACTGTCGACTTCTAC 60.160 54.545 26.66 10.11 40.86 2.59
22 23 1.836802 AGGGACTGTCGACTTCTACC 58.163 55.000 17.92 12.21 37.18 3.18
23 24 1.355043 AGGGACTGTCGACTTCTACCT 59.645 52.381 17.92 14.20 37.18 3.08
24 25 2.169330 GGGACTGTCGACTTCTACCTT 58.831 52.381 17.92 0.00 0.00 3.50
25 26 2.164017 GGGACTGTCGACTTCTACCTTC 59.836 54.545 17.92 1.55 0.00 3.46
26 27 2.159544 GGACTGTCGACTTCTACCTTCG 60.160 54.545 17.92 0.00 0.00 3.79
27 28 2.740981 GACTGTCGACTTCTACCTTCGA 59.259 50.000 17.92 0.00 39.38 3.71
28 29 2.743126 ACTGTCGACTTCTACCTTCGAG 59.257 50.000 17.92 3.36 42.16 4.04
29 30 2.082231 TGTCGACTTCTACCTTCGAGG 58.918 52.381 17.92 0.03 42.16 4.63
30 31 2.289882 TGTCGACTTCTACCTTCGAGGA 60.290 50.000 17.92 0.00 42.16 3.71
31 32 2.352342 GTCGACTTCTACCTTCGAGGAG 59.648 54.545 8.70 0.00 42.16 3.69
32 33 2.027377 TCGACTTCTACCTTCGAGGAGT 60.027 50.000 7.76 0.00 37.67 3.85
33 34 2.748532 CGACTTCTACCTTCGAGGAGTT 59.251 50.000 7.76 0.00 37.67 3.01
34 35 3.181508 CGACTTCTACCTTCGAGGAGTTC 60.182 52.174 7.76 0.00 37.67 3.01
35 36 3.090790 ACTTCTACCTTCGAGGAGTTCC 58.909 50.000 7.76 0.00 37.67 3.62
36 37 1.747709 TCTACCTTCGAGGAGTTCCG 58.252 55.000 7.76 0.00 37.67 4.30
37 38 1.004044 TCTACCTTCGAGGAGTTCCGT 59.996 52.381 7.76 0.00 37.67 4.69
38 39 1.817447 CTACCTTCGAGGAGTTCCGTT 59.183 52.381 7.76 0.00 37.67 4.44
39 40 0.602060 ACCTTCGAGGAGTTCCGTTC 59.398 55.000 7.76 0.00 37.67 3.95
40 41 0.108756 CCTTCGAGGAGTTCCGTTCC 60.109 60.000 0.00 0.00 37.67 3.62
41 42 0.601558 CTTCGAGGAGTTCCGTTCCA 59.398 55.000 0.00 0.00 42.08 3.53
42 43 0.601558 TTCGAGGAGTTCCGTTCCAG 59.398 55.000 0.00 0.00 42.08 3.86
43 44 0.538977 TCGAGGAGTTCCGTTCCAGT 60.539 55.000 0.00 0.00 42.08 4.00
44 45 0.109226 CGAGGAGTTCCGTTCCAGTC 60.109 60.000 0.00 0.00 42.08 3.51
45 46 1.258676 GAGGAGTTCCGTTCCAGTCT 58.741 55.000 0.00 0.00 42.08 3.24
46 47 1.619332 GAGGAGTTCCGTTCCAGTCTT 59.381 52.381 0.00 0.00 42.08 3.01
47 48 2.037381 GAGGAGTTCCGTTCCAGTCTTT 59.963 50.000 0.00 0.00 42.08 2.52
48 49 2.143925 GGAGTTCCGTTCCAGTCTTTG 58.856 52.381 0.00 0.00 34.74 2.77
49 50 1.531578 GAGTTCCGTTCCAGTCTTTGC 59.468 52.381 0.00 0.00 0.00 3.68
50 51 0.234884 GTTCCGTTCCAGTCTTTGCG 59.765 55.000 0.00 0.00 0.00 4.85
51 52 0.179067 TTCCGTTCCAGTCTTTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
52 53 0.599204 TCCGTTCCAGTCTTTGCGTC 60.599 55.000 0.00 0.00 0.00 5.19
53 54 0.878523 CCGTTCCAGTCTTTGCGTCA 60.879 55.000 0.00 0.00 0.00 4.35
54 55 0.232303 CGTTCCAGTCTTTGCGTCAC 59.768 55.000 0.00 0.00 0.00 3.67
55 56 1.583054 GTTCCAGTCTTTGCGTCACT 58.417 50.000 0.00 0.00 0.00 3.41
56 57 1.261619 GTTCCAGTCTTTGCGTCACTG 59.738 52.381 0.00 0.00 37.81 3.66
58 59 1.571460 CAGTCTTTGCGTCACTGGC 59.429 57.895 0.00 0.00 34.96 4.85
59 60 1.146041 AGTCTTTGCGTCACTGGCA 59.854 52.632 0.00 0.00 38.93 4.92
60 61 1.160329 AGTCTTTGCGTCACTGGCAC 61.160 55.000 0.00 0.00 40.71 5.01
61 62 1.891919 TCTTTGCGTCACTGGCACC 60.892 57.895 0.00 0.00 40.71 5.01
62 63 3.240606 CTTTGCGTCACTGGCACCG 62.241 63.158 0.00 0.00 40.71 4.94
66 67 3.414700 CGTCACTGGCACCGCTTC 61.415 66.667 0.00 0.00 0.00 3.86
67 68 3.414700 GTCACTGGCACCGCTTCG 61.415 66.667 0.00 0.00 0.00 3.79
68 69 3.611674 TCACTGGCACCGCTTCGA 61.612 61.111 0.00 0.00 0.00 3.71
69 70 3.414700 CACTGGCACCGCTTCGAC 61.415 66.667 0.00 0.00 0.00 4.20
70 71 3.616721 ACTGGCACCGCTTCGACT 61.617 61.111 0.00 0.00 0.00 4.18
71 72 3.114616 CTGGCACCGCTTCGACTG 61.115 66.667 0.00 0.00 0.00 3.51
101 102 2.661718 GGGGGTGTTGGGTATATTGTG 58.338 52.381 0.00 0.00 0.00 3.33
102 103 2.024751 GGGGGTGTTGGGTATATTGTGT 60.025 50.000 0.00 0.00 0.00 3.72
103 104 3.202595 GGGGGTGTTGGGTATATTGTGTA 59.797 47.826 0.00 0.00 0.00 2.90
104 105 4.201657 GGGGTGTTGGGTATATTGTGTAC 58.798 47.826 0.00 0.00 0.00 2.90
105 106 3.872771 GGGTGTTGGGTATATTGTGTACG 59.127 47.826 0.00 0.00 0.00 3.67
106 107 4.506758 GGTGTTGGGTATATTGTGTACGT 58.493 43.478 0.00 0.00 0.00 3.57
107 108 4.330620 GGTGTTGGGTATATTGTGTACGTG 59.669 45.833 0.00 0.00 0.00 4.49
108 109 4.931002 GTGTTGGGTATATTGTGTACGTGT 59.069 41.667 0.00 0.00 0.00 4.49
109 110 6.098679 GTGTTGGGTATATTGTGTACGTGTA 58.901 40.000 0.00 0.00 0.00 2.90
110 111 6.757947 GTGTTGGGTATATTGTGTACGTGTAT 59.242 38.462 0.00 0.00 0.00 2.29
111 112 7.920151 GTGTTGGGTATATTGTGTACGTGTATA 59.080 37.037 0.00 0.00 0.00 1.47
112 113 8.640651 TGTTGGGTATATTGTGTACGTGTATAT 58.359 33.333 0.00 0.00 0.00 0.86
113 114 9.480053 GTTGGGTATATTGTGTACGTGTATATT 57.520 33.333 0.00 0.00 0.00 1.28
115 116 9.478768 TGGGTATATTGTGTACGTGTATATTTG 57.521 33.333 0.00 0.00 0.00 2.32
116 117 9.480053 GGGTATATTGTGTACGTGTATATTTGT 57.520 33.333 0.00 0.00 0.00 2.83
120 121 7.661127 ATTGTGTACGTGTATATTTGTGTGT 57.339 32.000 0.00 0.00 0.00 3.72
121 122 8.760103 ATTGTGTACGTGTATATTTGTGTGTA 57.240 30.769 0.00 0.00 0.00 2.90
122 123 7.800015 TGTGTACGTGTATATTTGTGTGTAG 57.200 36.000 0.00 0.00 0.00 2.74
123 124 6.807720 TGTGTACGTGTATATTTGTGTGTAGG 59.192 38.462 0.00 0.00 0.00 3.18
124 125 6.254157 GTGTACGTGTATATTTGTGTGTAGGG 59.746 42.308 0.00 0.00 0.00 3.53
125 126 4.186159 ACGTGTATATTTGTGTGTAGGGC 58.814 43.478 0.00 0.00 0.00 5.19
126 127 3.558418 CGTGTATATTTGTGTGTAGGGCC 59.442 47.826 0.00 0.00 0.00 5.80
127 128 3.881089 GTGTATATTTGTGTGTAGGGCCC 59.119 47.826 16.46 16.46 0.00 5.80
128 129 3.523972 TGTATATTTGTGTGTAGGGCCCA 59.476 43.478 27.56 7.27 0.00 5.36
129 130 2.500392 TATTTGTGTGTAGGGCCCAC 57.500 50.000 27.56 20.24 0.00 4.61
130 131 0.251608 ATTTGTGTGTAGGGCCCACC 60.252 55.000 27.56 14.70 40.67 4.61
139 140 2.035783 GGGCCCACCTCCTGTTTC 59.964 66.667 19.95 0.00 35.85 2.78
140 141 2.035783 GGCCCACCTCCTGTTTCC 59.964 66.667 0.00 0.00 0.00 3.13
141 142 2.539081 GGCCCACCTCCTGTTTCCT 61.539 63.158 0.00 0.00 0.00 3.36
142 143 1.460699 GCCCACCTCCTGTTTCCTT 59.539 57.895 0.00 0.00 0.00 3.36
143 144 0.178961 GCCCACCTCCTGTTTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
144 145 1.620822 CCCACCTCCTGTTTCCTTTG 58.379 55.000 0.00 0.00 0.00 2.77
145 146 1.133482 CCCACCTCCTGTTTCCTTTGT 60.133 52.381 0.00 0.00 0.00 2.83
146 147 2.107552 CCCACCTCCTGTTTCCTTTGTA 59.892 50.000 0.00 0.00 0.00 2.41
147 148 3.245264 CCCACCTCCTGTTTCCTTTGTAT 60.245 47.826 0.00 0.00 0.00 2.29
148 149 4.018779 CCCACCTCCTGTTTCCTTTGTATA 60.019 45.833 0.00 0.00 0.00 1.47
149 150 5.186198 CCACCTCCTGTTTCCTTTGTATAG 58.814 45.833 0.00 0.00 0.00 1.31
150 151 5.280521 CCACCTCCTGTTTCCTTTGTATAGT 60.281 44.000 0.00 0.00 0.00 2.12
151 152 6.238648 CACCTCCTGTTTCCTTTGTATAGTT 58.761 40.000 0.00 0.00 0.00 2.24
152 153 6.149474 CACCTCCTGTTTCCTTTGTATAGTTG 59.851 42.308 0.00 0.00 0.00 3.16
153 154 6.043938 ACCTCCTGTTTCCTTTGTATAGTTGA 59.956 38.462 0.00 0.00 0.00 3.18
154 155 6.595716 CCTCCTGTTTCCTTTGTATAGTTGAG 59.404 42.308 0.00 0.00 0.00 3.02
155 156 6.472887 TCCTGTTTCCTTTGTATAGTTGAGG 58.527 40.000 0.00 0.00 0.00 3.86
156 157 6.043938 TCCTGTTTCCTTTGTATAGTTGAGGT 59.956 38.462 0.00 0.00 0.00 3.85
157 158 6.715264 CCTGTTTCCTTTGTATAGTTGAGGTT 59.285 38.462 0.00 0.00 0.00 3.50
158 159 7.308589 CCTGTTTCCTTTGTATAGTTGAGGTTG 60.309 40.741 0.00 0.00 0.00 3.77
159 160 7.057894 TGTTTCCTTTGTATAGTTGAGGTTGT 58.942 34.615 0.00 0.00 0.00 3.32
160 161 7.012894 TGTTTCCTTTGTATAGTTGAGGTTGTG 59.987 37.037 0.00 0.00 0.00 3.33
161 162 5.556915 TCCTTTGTATAGTTGAGGTTGTGG 58.443 41.667 0.00 0.00 0.00 4.17
162 163 4.156008 CCTTTGTATAGTTGAGGTTGTGGC 59.844 45.833 0.00 0.00 0.00 5.01
163 164 3.343941 TGTATAGTTGAGGTTGTGGCC 57.656 47.619 0.00 0.00 0.00 5.36
164 165 2.026636 TGTATAGTTGAGGTTGTGGCCC 60.027 50.000 0.00 0.00 0.00 5.80
165 166 1.072266 ATAGTTGAGGTTGTGGCCCA 58.928 50.000 0.00 0.00 0.00 5.36
166 167 0.109723 TAGTTGAGGTTGTGGCCCAC 59.890 55.000 7.01 7.01 34.56 4.61
167 168 2.197324 TTGAGGTTGTGGCCCACC 59.803 61.111 12.25 3.64 32.73 4.61
168 169 2.391130 TTGAGGTTGTGGCCCACCT 61.391 57.895 16.46 16.46 36.63 4.00
169 170 2.034221 GAGGTTGTGGCCCACCTC 59.966 66.667 23.36 23.36 41.44 3.85
170 171 2.450502 AGGTTGTGGCCCACCTCT 60.451 61.111 12.25 3.11 36.63 3.69
171 172 2.282462 GGTTGTGGCCCACCTCTG 60.282 66.667 12.25 0.00 36.63 3.35
172 173 2.515901 GTTGTGGCCCACCTCTGT 59.484 61.111 12.25 0.00 36.63 3.41
173 174 1.758592 GTTGTGGCCCACCTCTGTA 59.241 57.895 12.25 0.00 36.63 2.74
174 175 0.605589 GTTGTGGCCCACCTCTGTAC 60.606 60.000 12.25 0.00 36.63 2.90
175 176 0.766674 TTGTGGCCCACCTCTGTACT 60.767 55.000 12.25 0.00 36.63 2.73
176 177 0.766674 TGTGGCCCACCTCTGTACTT 60.767 55.000 12.25 0.00 36.63 2.24
177 178 1.272807 GTGGCCCACCTCTGTACTTA 58.727 55.000 1.17 0.00 36.63 2.24
178 179 1.626825 GTGGCCCACCTCTGTACTTAA 59.373 52.381 1.17 0.00 36.63 1.85
179 180 1.626825 TGGCCCACCTCTGTACTTAAC 59.373 52.381 0.00 0.00 36.63 2.01
180 181 1.405121 GGCCCACCTCTGTACTTAACG 60.405 57.143 0.00 0.00 0.00 3.18
181 182 1.274447 GCCCACCTCTGTACTTAACGT 59.726 52.381 0.00 0.00 0.00 3.99
182 183 2.929592 GCCCACCTCTGTACTTAACGTG 60.930 54.545 0.00 0.00 0.00 4.49
183 184 2.334838 CCACCTCTGTACTTAACGTGC 58.665 52.381 0.00 0.00 0.00 5.34
184 185 2.334838 CACCTCTGTACTTAACGTGCC 58.665 52.381 0.00 0.00 0.00 5.01
185 186 2.029290 CACCTCTGTACTTAACGTGCCT 60.029 50.000 0.00 0.00 0.00 4.75
186 187 2.029290 ACCTCTGTACTTAACGTGCCTG 60.029 50.000 0.00 0.00 0.00 4.85
187 188 2.607187 CTCTGTACTTAACGTGCCTGG 58.393 52.381 0.00 0.00 0.00 4.45
188 189 1.965643 TCTGTACTTAACGTGCCTGGT 59.034 47.619 0.00 0.00 0.00 4.00
189 190 2.066262 CTGTACTTAACGTGCCTGGTG 58.934 52.381 0.00 0.00 0.00 4.17
190 191 0.794473 GTACTTAACGTGCCTGGTGC 59.206 55.000 0.00 0.00 41.77 5.01
199 200 2.359850 GCCTGGTGCACCGATCAA 60.360 61.111 30.07 12.05 40.77 2.57
200 201 1.750399 GCCTGGTGCACCGATCAAT 60.750 57.895 30.07 0.00 40.77 2.57
201 202 0.463654 GCCTGGTGCACCGATCAATA 60.464 55.000 30.07 10.51 40.77 1.90
202 203 1.299541 CCTGGTGCACCGATCAATAC 58.700 55.000 30.07 4.16 39.43 1.89
203 204 1.406751 CCTGGTGCACCGATCAATACA 60.407 52.381 30.07 8.97 39.43 2.29
204 205 2.564771 CTGGTGCACCGATCAATACAT 58.435 47.619 30.07 0.00 39.43 2.29
205 206 2.545526 CTGGTGCACCGATCAATACATC 59.454 50.000 30.07 2.63 39.43 3.06
206 207 1.526887 GGTGCACCGATCAATACATCG 59.473 52.381 22.49 0.00 44.45 3.84
216 217 5.912360 GATCAATACATCGAGATTGCACA 57.088 39.130 10.94 0.00 33.82 4.57
217 218 5.913637 GATCAATACATCGAGATTGCACAG 58.086 41.667 10.94 0.00 33.82 3.66
218 219 3.557185 TCAATACATCGAGATTGCACAGC 59.443 43.478 10.94 0.00 33.82 4.40
219 220 1.939974 TACATCGAGATTGCACAGCC 58.060 50.000 0.00 0.00 0.00 4.85
220 221 0.745845 ACATCGAGATTGCACAGCCC 60.746 55.000 0.00 0.00 0.00 5.19
221 222 0.745486 CATCGAGATTGCACAGCCCA 60.745 55.000 0.00 0.00 0.00 5.36
222 223 0.182061 ATCGAGATTGCACAGCCCAT 59.818 50.000 0.00 0.00 0.00 4.00
223 224 0.829990 TCGAGATTGCACAGCCCATA 59.170 50.000 0.00 0.00 0.00 2.74
224 225 1.209261 TCGAGATTGCACAGCCCATAA 59.791 47.619 0.00 0.00 0.00 1.90
225 226 1.331756 CGAGATTGCACAGCCCATAAC 59.668 52.381 0.00 0.00 0.00 1.89
226 227 2.648059 GAGATTGCACAGCCCATAACT 58.352 47.619 0.00 0.00 0.00 2.24
227 228 3.019564 GAGATTGCACAGCCCATAACTT 58.980 45.455 0.00 0.00 0.00 2.66
228 229 2.756760 AGATTGCACAGCCCATAACTTG 59.243 45.455 0.00 0.00 0.00 3.16
229 230 1.993956 TTGCACAGCCCATAACTTGT 58.006 45.000 0.00 0.00 0.00 3.16
230 231 1.533625 TGCACAGCCCATAACTTGTC 58.466 50.000 0.00 0.00 0.00 3.18
231 232 0.811281 GCACAGCCCATAACTTGTCC 59.189 55.000 0.00 0.00 0.00 4.02
232 233 1.614317 GCACAGCCCATAACTTGTCCT 60.614 52.381 0.00 0.00 0.00 3.85
233 234 2.795329 CACAGCCCATAACTTGTCCTT 58.205 47.619 0.00 0.00 0.00 3.36
234 235 2.749621 CACAGCCCATAACTTGTCCTTC 59.250 50.000 0.00 0.00 0.00 3.46
235 236 2.644798 ACAGCCCATAACTTGTCCTTCT 59.355 45.455 0.00 0.00 0.00 2.85
236 237 3.844211 ACAGCCCATAACTTGTCCTTCTA 59.156 43.478 0.00 0.00 0.00 2.10
237 238 4.192317 CAGCCCATAACTTGTCCTTCTAC 58.808 47.826 0.00 0.00 0.00 2.59
238 239 3.844211 AGCCCATAACTTGTCCTTCTACA 59.156 43.478 0.00 0.00 0.00 2.74
239 240 4.288626 AGCCCATAACTTGTCCTTCTACAA 59.711 41.667 0.00 0.00 37.75 2.41
240 241 4.395231 GCCCATAACTTGTCCTTCTACAAC 59.605 45.833 0.00 0.00 35.56 3.32
241 242 5.556915 CCCATAACTTGTCCTTCTACAACA 58.443 41.667 0.00 0.00 35.56 3.33
242 243 6.001460 CCCATAACTTGTCCTTCTACAACAA 58.999 40.000 0.00 0.00 35.56 2.83
243 244 6.072673 CCCATAACTTGTCCTTCTACAACAAC 60.073 42.308 0.00 0.00 35.56 3.32
244 245 6.485313 CCATAACTTGTCCTTCTACAACAACA 59.515 38.462 0.00 0.00 35.56 3.33
245 246 7.307989 CCATAACTTGTCCTTCTACAACAACAG 60.308 40.741 0.00 0.00 35.56 3.16
246 247 5.353394 ACTTGTCCTTCTACAACAACAGA 57.647 39.130 0.00 0.00 35.56 3.41
247 248 5.930135 ACTTGTCCTTCTACAACAACAGAT 58.070 37.500 0.00 0.00 35.56 2.90
248 249 7.062749 ACTTGTCCTTCTACAACAACAGATA 57.937 36.000 0.00 0.00 35.56 1.98
249 250 7.155328 ACTTGTCCTTCTACAACAACAGATAG 58.845 38.462 0.00 0.00 35.56 2.08
250 251 6.037786 TGTCCTTCTACAACAACAGATAGG 57.962 41.667 0.00 0.00 0.00 2.57
251 252 5.778241 TGTCCTTCTACAACAACAGATAGGA 59.222 40.000 0.00 0.00 31.46 2.94
252 253 6.269077 TGTCCTTCTACAACAACAGATAGGAA 59.731 38.462 0.00 0.00 33.66 3.36
253 254 6.814146 GTCCTTCTACAACAACAGATAGGAAG 59.186 42.308 0.00 0.00 33.66 3.46
254 255 6.497259 TCCTTCTACAACAACAGATAGGAAGT 59.503 38.462 0.00 0.00 31.22 3.01
262 263 7.827729 ACAACAACAGATAGGAAGTATTTACCC 59.172 37.037 0.00 0.00 0.00 3.69
271 272 6.051179 AGGAAGTATTTACCCTGAAGTGAC 57.949 41.667 0.00 0.00 0.00 3.67
272 273 5.785940 AGGAAGTATTTACCCTGAAGTGACT 59.214 40.000 0.00 0.00 0.00 3.41
274 275 7.456902 AGGAAGTATTTACCCTGAAGTGACTTA 59.543 37.037 0.00 0.00 0.00 2.24
275 276 8.098912 GGAAGTATTTACCCTGAAGTGACTTAA 58.901 37.037 0.00 0.00 0.00 1.85
276 277 9.668497 GAAGTATTTACCCTGAAGTGACTTAAT 57.332 33.333 0.00 0.00 0.00 1.40
277 278 9.668497 AAGTATTTACCCTGAAGTGACTTAATC 57.332 33.333 0.00 0.00 0.00 1.75
280 281 7.979444 TTTACCCTGAAGTGACTTAATCAAG 57.021 36.000 0.00 0.00 39.72 3.02
282 283 5.308825 ACCCTGAAGTGACTTAATCAAGTG 58.691 41.667 0.00 0.00 45.18 3.16
284 285 5.180117 CCCTGAAGTGACTTAATCAAGTGTG 59.820 44.000 0.00 0.00 45.18 3.82
293 294 2.949177 AATCAAGTGTGTACCCTGCA 57.051 45.000 0.00 0.00 0.00 4.41
306 307 1.918262 ACCCTGCATGGAAGAGAATCA 59.082 47.619 15.66 0.00 35.84 2.57
308 309 2.950309 CCCTGCATGGAAGAGAATCAAG 59.050 50.000 0.97 0.00 35.84 3.02
310 311 3.626670 CCTGCATGGAAGAGAATCAAGTC 59.373 47.826 0.00 0.00 35.84 3.01
311 312 3.614092 TGCATGGAAGAGAATCAAGTCC 58.386 45.455 0.00 0.00 37.82 3.85
317 318 6.227298 TGGAAGAGAATCAAGTCCATACTC 57.773 41.667 0.00 0.00 37.73 2.59
365 366 1.208052 GTTGACCATGAGAGCCAGCTA 59.792 52.381 0.00 0.00 0.00 3.32
366 367 1.117994 TGACCATGAGAGCCAGCTAG 58.882 55.000 0.00 0.00 0.00 3.42
367 368 0.392336 GACCATGAGAGCCAGCTAGG 59.608 60.000 0.00 0.00 41.84 3.02
368 369 0.326048 ACCATGAGAGCCAGCTAGGT 60.326 55.000 0.00 0.00 40.61 3.08
369 370 1.062886 ACCATGAGAGCCAGCTAGGTA 60.063 52.381 0.00 0.00 40.61 3.08
393 394 5.209659 AGGTAGAGTCGGATTAGGACAATT 58.790 41.667 0.00 0.00 36.87 2.32
419 420 6.869206 AAGGTATACACATACACCTGTTCT 57.131 37.500 5.01 0.00 40.54 3.01
430 431 2.894126 ACACCTGTTCTCGAACTCTGAT 59.106 45.455 10.75 0.00 41.67 2.90
440 441 2.897326 TCGAACTCTGATTCCAAGTCCA 59.103 45.455 0.00 0.00 0.00 4.02
448 449 8.059798 ACTCTGATTCCAAGTCCAAATTTATG 57.940 34.615 0.00 0.00 0.00 1.90
538 539 4.455877 GCCTGCAAGTGATTACTAAACAGT 59.544 41.667 11.21 0.00 35.69 3.55
556 557 4.158015 ACAGTGGTTACCAGCTAAGTAGT 58.842 43.478 3.45 0.00 32.34 2.73
634 635 2.297315 TCAGATGCGTGTCTCTGTTTCT 59.703 45.455 0.00 0.00 39.87 2.52
638 639 0.601311 GCGTGTCTCTGTTTCTGCCT 60.601 55.000 0.00 0.00 0.00 4.75
650 651 0.041833 TTCTGCCTAGCTGACTCCCT 59.958 55.000 0.00 0.00 36.32 4.20
655 656 2.759973 TAGCTGACTCCCTGCGGG 60.760 66.667 3.88 3.88 46.11 6.13
656 657 3.602075 TAGCTGACTCCCTGCGGGT 62.602 63.158 11.58 0.00 44.74 5.28
657 658 4.021925 GCTGACTCCCTGCGGGTT 62.022 66.667 11.58 0.74 44.74 4.11
658 659 2.750350 CTGACTCCCTGCGGGTTT 59.250 61.111 11.58 0.38 44.74 3.27
696 697 6.044682 CCAACAGCAAAGATAATTGATTCCC 58.955 40.000 0.00 0.00 31.84 3.97
697 698 6.127253 CCAACAGCAAAGATAATTGATTCCCT 60.127 38.462 0.00 0.00 31.84 4.20
703 704 3.393800 AGATAATTGATTCCCTGTCGCG 58.606 45.455 0.00 0.00 0.00 5.87
734 735 9.295214 CATATGCCTAACAAGATATAGAAGTCG 57.705 37.037 0.00 0.00 0.00 4.18
735 736 6.085555 TGCCTAACAAGATATAGAAGTCGG 57.914 41.667 0.00 0.00 0.00 4.79
745 746 0.174845 TAGAAGTCGGTTCGCCATGG 59.825 55.000 7.63 7.63 40.49 3.66
778 779 4.647564 ACCATGTGAAAGAGAATCACCT 57.352 40.909 4.40 0.00 45.19 4.00
779 780 4.583871 ACCATGTGAAAGAGAATCACCTC 58.416 43.478 4.40 0.00 45.19 3.85
780 781 4.042062 ACCATGTGAAAGAGAATCACCTCA 59.958 41.667 4.40 0.00 45.19 3.86
787 788 7.939039 TGTGAAAGAGAATCACCTCATTTAGTT 59.061 33.333 4.40 0.00 45.19 2.24
809 810 8.477419 AGTTATCAATTCTTGTTTGGGAAAGA 57.523 30.769 0.00 0.00 0.00 2.52
824 825 4.410883 TGGGAAAGAAGGAACAGTAGTTGA 59.589 41.667 0.00 0.00 38.30 3.18
839 840 2.230660 AGTTGACCAAAGCCAGCTAAC 58.769 47.619 0.00 0.00 0.00 2.34
840 841 1.953686 GTTGACCAAAGCCAGCTAACA 59.046 47.619 0.00 0.00 0.00 2.41
842 843 2.229792 TGACCAAAGCCAGCTAACAAG 58.770 47.619 0.00 0.00 0.00 3.16
856 857 7.201565 GCCAGCTAACAAGAAGAGTGTAATTAG 60.202 40.741 0.00 0.00 0.00 1.73
870 871 7.500559 AGAGTGTAATTAGGATGATCAAAAGGC 59.499 37.037 0.00 0.00 0.00 4.35
876 877 3.393800 AGGATGATCAAAAGGCGATACG 58.606 45.455 0.00 0.00 0.00 3.06
880 881 4.593597 TGATCAAAAGGCGATACGTTTC 57.406 40.909 0.00 0.00 35.36 2.78
899 900 1.501170 TCCCAAACCCACAATCCAAGA 59.499 47.619 0.00 0.00 0.00 3.02
909 910 5.010617 ACCCACAATCCAAGACATAAACAAC 59.989 40.000 0.00 0.00 0.00 3.32
913 914 7.309377 CCACAATCCAAGACATAAACAACTCAT 60.309 37.037 0.00 0.00 0.00 2.90
1009 1010 2.127708 GTATCCCTCCCAACTCACCAT 58.872 52.381 0.00 0.00 0.00 3.55
1010 1011 1.216990 ATCCCTCCCAACTCACCATC 58.783 55.000 0.00 0.00 0.00 3.51
1011 1012 0.178876 TCCCTCCCAACTCACCATCA 60.179 55.000 0.00 0.00 0.00 3.07
1012 1013 0.035056 CCCTCCCAACTCACCATCAC 60.035 60.000 0.00 0.00 0.00 3.06
1013 1014 0.692476 CCTCCCAACTCACCATCACA 59.308 55.000 0.00 0.00 0.00 3.58
1014 1015 1.073763 CCTCCCAACTCACCATCACAA 59.926 52.381 0.00 0.00 0.00 3.33
1015 1016 2.154462 CTCCCAACTCACCATCACAAC 58.846 52.381 0.00 0.00 0.00 3.32
1016 1017 1.774254 TCCCAACTCACCATCACAACT 59.226 47.619 0.00 0.00 0.00 3.16
1017 1018 1.881973 CCCAACTCACCATCACAACTG 59.118 52.381 0.00 0.00 0.00 3.16
1018 1019 1.267806 CCAACTCACCATCACAACTGC 59.732 52.381 0.00 0.00 0.00 4.40
1019 1020 1.948834 CAACTCACCATCACAACTGCA 59.051 47.619 0.00 0.00 0.00 4.41
1020 1021 1.597742 ACTCACCATCACAACTGCAC 58.402 50.000 0.00 0.00 0.00 4.57
1021 1022 0.514255 CTCACCATCACAACTGCACG 59.486 55.000 0.00 0.00 0.00 5.34
1081 1082 3.640029 ACTTCGTCACTTCAAGTAGGGAA 59.360 43.478 0.00 0.00 0.00 3.97
1083 1084 3.986277 TCGTCACTTCAAGTAGGGAAAC 58.014 45.455 0.00 0.00 0.00 2.78
1084 1085 3.385433 TCGTCACTTCAAGTAGGGAAACA 59.615 43.478 0.00 0.00 0.00 2.83
1086 1087 4.500887 CGTCACTTCAAGTAGGGAAACAGA 60.501 45.833 0.00 0.00 0.00 3.41
1087 1088 4.991687 GTCACTTCAAGTAGGGAAACAGAG 59.008 45.833 0.00 0.00 0.00 3.35
1088 1089 4.899457 TCACTTCAAGTAGGGAAACAGAGA 59.101 41.667 0.00 0.00 0.00 3.10
1089 1090 5.365605 TCACTTCAAGTAGGGAAACAGAGAA 59.634 40.000 0.00 0.00 0.00 2.87
1090 1091 6.043243 TCACTTCAAGTAGGGAAACAGAGAAT 59.957 38.462 0.00 0.00 0.00 2.40
1091 1092 7.234782 TCACTTCAAGTAGGGAAACAGAGAATA 59.765 37.037 0.00 0.00 0.00 1.75
1092 1093 8.043710 CACTTCAAGTAGGGAAACAGAGAATAT 58.956 37.037 0.00 0.00 0.00 1.28
1093 1094 8.261522 ACTTCAAGTAGGGAAACAGAGAATATC 58.738 37.037 0.00 0.00 0.00 1.63
1094 1095 7.979786 TCAAGTAGGGAAACAGAGAATATCT 57.020 36.000 0.00 0.00 39.56 1.98
1219 1252 1.201424 GGTTCGGTAAGAGGGACCAT 58.799 55.000 0.00 0.00 36.72 3.55
1223 1256 1.191535 CGGTAAGAGGGACCATGTGA 58.808 55.000 0.00 0.00 36.72 3.58
1315 6105 0.748005 GCATCGTTATGTGCCCAGGT 60.748 55.000 0.00 0.00 35.38 4.00
1364 6167 9.914131 ATATATACATACATCATGCGTATCACC 57.086 33.333 5.03 0.00 38.29 4.02
1401 6206 6.775629 TCACACATACTAGCTATGTCCATACA 59.224 38.462 12.32 0.00 43.21 2.29
1747 6579 2.496817 GCCTTCGACGGAGCATCT 59.503 61.111 12.95 0.00 33.73 2.90
1793 6625 2.618816 GCCAAATGGGAGTCTGACATCA 60.619 50.000 10.88 5.49 40.01 3.07
1880 6712 6.480320 AGTGTTCGATATCATGGCTAAAGTTC 59.520 38.462 3.12 0.00 0.00 3.01
2042 6874 3.366724 CGATTACGTCAACAAGCTTAGCA 59.633 43.478 7.07 0.00 34.56 3.49
2175 7007 5.221762 TGGTTACTGCTCAGGCTAACTAAAA 60.222 40.000 1.66 0.00 39.59 1.52
2208 7040 3.055719 GCCACCATCCGTGTGTGG 61.056 66.667 3.58 3.58 43.64 4.17
2229 7061 9.705290 GTGTGGGAGTCATAAATAAATTTGTTT 57.295 29.630 15.89 15.89 0.00 2.83
2301 7138 4.223700 TGTCCAAGATATCACTGAGCTTGT 59.776 41.667 5.32 0.00 35.41 3.16
2304 7141 6.818644 GTCCAAGATATCACTGAGCTTGTTTA 59.181 38.462 5.32 0.00 35.41 2.01
2429 7266 2.225491 GCTGGAGCTCTCATACTCTACG 59.775 54.545 14.64 0.00 38.21 3.51
2439 7276 9.373603 AGCTCTCATACTCTACGTATATACTTG 57.626 37.037 11.05 0.00 36.69 3.16
2448 7285 3.163467 ACGTATATACTTGCTCCCTCCC 58.837 50.000 11.05 0.00 0.00 4.30
2459 7296 0.535797 CTCCCTCCCTACGGTGAAAC 59.464 60.000 0.00 0.00 0.00 2.78
2484 7323 8.095287 CGTGTACGTTTGACTTTAAAATTTGT 57.905 30.769 0.00 0.00 34.11 2.83
2581 7420 7.604164 CGGTAATCAAGACCAATAGCATTCTAT 59.396 37.037 0.00 0.00 36.72 1.98
2641 7480 5.578157 TGGGGGTAGGATAATTAAAGAGC 57.422 43.478 0.00 0.00 0.00 4.09
2652 7491 6.371271 GGATAATTAAAGAGCAGAGAGATGGC 59.629 42.308 0.00 0.00 0.00 4.40
2732 7571 6.567050 TCTATATGTACACTTTTCACCGGAC 58.433 40.000 9.46 0.00 0.00 4.79
2798 7637 2.331451 GTTGGACGCGCTTTGCTT 59.669 55.556 5.73 0.00 43.27 3.91
2799 7638 1.299089 GTTGGACGCGCTTTGCTTT 60.299 52.632 5.73 0.00 43.27 3.51
2817 7656 0.888619 TTGCCGTTGGTGTTGTTTGA 59.111 45.000 0.00 0.00 0.00 2.69
2990 7829 3.691118 TGGATCTGGAATTTTTCGCTCTG 59.309 43.478 0.00 0.00 0.00 3.35
3075 7914 5.298777 GGATTTGATTTGATGAGTGGAGGAG 59.701 44.000 0.00 0.00 0.00 3.69
3092 7931 3.654414 AGGAGACGATGAAGTGTGTTTC 58.346 45.455 0.00 0.00 0.00 2.78
3097 7936 4.511826 AGACGATGAAGTGTGTTTCCTTTC 59.488 41.667 0.00 0.00 0.00 2.62
3138 7977 1.271926 GGTGGGCCTTTCATAGTGTGT 60.272 52.381 4.53 0.00 0.00 3.72
3171 8010 9.555727 GTTATCTGCTAATCAACCCATACTTAA 57.444 33.333 0.00 0.00 0.00 1.85
3173 8012 8.627208 ATCTGCTAATCAACCCATACTTAATG 57.373 34.615 0.00 0.00 35.15 1.90
3191 8042 1.140161 GTGCGTCGGTGGCTACATA 59.860 57.895 1.52 0.00 0.00 2.29
3207 8058 8.692710 GTGGCTACATATACTATATTGGTGCTA 58.307 37.037 0.00 0.00 0.00 3.49
3228 8079 5.916883 GCTACAATATCACATGTTGGCATTC 59.083 40.000 0.00 0.00 35.92 2.67
3229 8080 6.238842 GCTACAATATCACATGTTGGCATTCT 60.239 38.462 0.00 0.00 35.92 2.40
3272 8123 3.249917 GCACGGGGTTGATACATTTTTG 58.750 45.455 0.00 0.00 0.00 2.44
3273 8124 3.249917 CACGGGGTTGATACATTTTTGC 58.750 45.455 0.00 0.00 0.00 3.68
3278 8129 1.917303 GTTGATACATTTTTGCGGCCG 59.083 47.619 24.05 24.05 0.00 6.13
3287 8138 2.227089 TTTTGCGGCCGGTTGTTGTT 62.227 50.000 29.38 0.00 0.00 2.83
3290 8141 3.111939 CGGCCGGTTGTTGTTGAA 58.888 55.556 20.10 0.00 0.00 2.69
3313 8164 5.189659 TGATTTGTAAAAAGGTTGACCCG 57.810 39.130 0.00 0.00 38.74 5.28
3326 8177 1.548081 TGACCCGGTCAGAATCGTTA 58.452 50.000 16.73 0.00 37.67 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.882474 AGAAGTCGACAGTCCCTTCG 59.118 55.000 19.50 0.00 38.62 3.79
1 2 2.164017 GGTAGAAGTCGACAGTCCCTTC 59.836 54.545 19.50 11.34 34.82 3.46
3 4 1.355043 AGGTAGAAGTCGACAGTCCCT 59.645 52.381 19.50 13.43 0.00 4.20
4 5 1.836802 AGGTAGAAGTCGACAGTCCC 58.163 55.000 19.50 11.51 0.00 4.46
6 7 2.740981 TCGAAGGTAGAAGTCGACAGTC 59.259 50.000 19.50 14.35 38.78 3.51
7 8 2.743126 CTCGAAGGTAGAAGTCGACAGT 59.257 50.000 19.50 4.69 38.78 3.55
8 9 2.096174 CCTCGAAGGTAGAAGTCGACAG 59.904 54.545 19.50 1.11 38.78 3.51
9 10 2.082231 CCTCGAAGGTAGAAGTCGACA 58.918 52.381 19.50 0.00 38.78 4.35
10 11 2.352342 CTCCTCGAAGGTAGAAGTCGAC 59.648 54.545 7.70 7.70 38.78 4.20
11 12 2.027377 ACTCCTCGAAGGTAGAAGTCGA 60.027 50.000 0.00 0.00 41.22 4.20
12 13 2.358015 ACTCCTCGAAGGTAGAAGTCG 58.642 52.381 0.00 0.00 36.53 4.18
13 14 3.129113 GGAACTCCTCGAAGGTAGAAGTC 59.871 52.174 0.00 0.00 36.53 3.01
14 15 3.090790 GGAACTCCTCGAAGGTAGAAGT 58.909 50.000 0.00 0.00 36.53 3.01
15 16 2.097791 CGGAACTCCTCGAAGGTAGAAG 59.902 54.545 0.00 0.00 36.53 2.85
16 17 2.089980 CGGAACTCCTCGAAGGTAGAA 58.910 52.381 0.00 0.00 36.53 2.10
17 18 1.004044 ACGGAACTCCTCGAAGGTAGA 59.996 52.381 0.00 0.00 36.53 2.59
18 19 1.461559 ACGGAACTCCTCGAAGGTAG 58.538 55.000 0.00 0.00 36.53 3.18
19 20 1.815003 GAACGGAACTCCTCGAAGGTA 59.185 52.381 0.00 0.00 36.53 3.08
20 21 0.602060 GAACGGAACTCCTCGAAGGT 59.398 55.000 0.00 0.00 36.53 3.50
21 22 0.108756 GGAACGGAACTCCTCGAAGG 60.109 60.000 0.00 0.00 36.46 3.46
22 23 0.601558 TGGAACGGAACTCCTCGAAG 59.398 55.000 0.00 0.00 33.77 3.79
23 24 0.601558 CTGGAACGGAACTCCTCGAA 59.398 55.000 0.00 0.00 36.31 3.71
24 25 0.538977 ACTGGAACGGAACTCCTCGA 60.539 55.000 0.00 0.00 38.67 4.04
25 26 0.109226 GACTGGAACGGAACTCCTCG 60.109 60.000 0.00 0.00 38.67 4.63
26 27 1.258676 AGACTGGAACGGAACTCCTC 58.741 55.000 0.00 0.00 38.67 3.71
27 28 1.718280 AAGACTGGAACGGAACTCCT 58.282 50.000 0.00 0.00 38.67 3.69
28 29 2.143925 CAAAGACTGGAACGGAACTCC 58.856 52.381 0.00 0.00 38.67 3.85
29 30 1.531578 GCAAAGACTGGAACGGAACTC 59.468 52.381 0.00 0.00 38.67 3.01
30 31 1.594331 GCAAAGACTGGAACGGAACT 58.406 50.000 0.00 0.00 38.67 3.01
31 32 0.234884 CGCAAAGACTGGAACGGAAC 59.765 55.000 0.00 0.00 38.67 3.62
32 33 0.179067 ACGCAAAGACTGGAACGGAA 60.179 50.000 0.00 0.00 38.67 4.30
33 34 0.599204 GACGCAAAGACTGGAACGGA 60.599 55.000 0.00 0.00 38.67 4.69
34 35 0.878523 TGACGCAAAGACTGGAACGG 60.879 55.000 0.00 0.00 42.99 4.44
35 36 0.232303 GTGACGCAAAGACTGGAACG 59.768 55.000 0.00 0.00 0.00 3.95
36 37 1.261619 CAGTGACGCAAAGACTGGAAC 59.738 52.381 0.00 0.00 34.63 3.62
37 38 1.581934 CAGTGACGCAAAGACTGGAA 58.418 50.000 0.00 0.00 34.63 3.53
38 39 3.289128 CAGTGACGCAAAGACTGGA 57.711 52.632 0.00 0.00 34.63 3.86
40 41 1.159713 TGCCAGTGACGCAAAGACTG 61.160 55.000 0.00 0.00 37.45 3.51
41 42 1.146041 TGCCAGTGACGCAAAGACT 59.854 52.632 0.00 0.00 32.05 3.24
42 43 1.279840 GTGCCAGTGACGCAAAGAC 59.720 57.895 0.00 0.00 38.13 3.01
43 44 1.891919 GGTGCCAGTGACGCAAAGA 60.892 57.895 0.00 0.00 38.13 2.52
44 45 2.639286 GGTGCCAGTGACGCAAAG 59.361 61.111 0.00 0.00 38.13 2.77
45 46 3.276091 CGGTGCCAGTGACGCAAA 61.276 61.111 0.00 0.00 38.13 3.68
49 50 3.414700 GAAGCGGTGCCAGTGACG 61.415 66.667 0.00 0.00 0.00 4.35
50 51 3.414700 CGAAGCGGTGCCAGTGAC 61.415 66.667 0.00 0.00 0.00 3.67
51 52 3.611674 TCGAAGCGGTGCCAGTGA 61.612 61.111 0.00 0.00 0.00 3.41
52 53 3.414700 GTCGAAGCGGTGCCAGTG 61.415 66.667 0.00 0.00 0.00 3.66
53 54 3.616721 AGTCGAAGCGGTGCCAGT 61.617 61.111 0.00 0.00 0.00 4.00
54 55 3.114616 CAGTCGAAGCGGTGCCAG 61.115 66.667 0.00 0.00 0.00 4.85
81 82 2.024751 ACACAATATACCCAACACCCCC 60.025 50.000 0.00 0.00 0.00 5.40
82 83 3.375647 ACACAATATACCCAACACCCC 57.624 47.619 0.00 0.00 0.00 4.95
83 84 3.872771 CGTACACAATATACCCAACACCC 59.127 47.826 0.00 0.00 0.00 4.61
84 85 4.330620 CACGTACACAATATACCCAACACC 59.669 45.833 0.00 0.00 0.00 4.16
85 86 4.931002 ACACGTACACAATATACCCAACAC 59.069 41.667 0.00 0.00 0.00 3.32
86 87 5.149973 ACACGTACACAATATACCCAACA 57.850 39.130 0.00 0.00 0.00 3.33
87 88 9.480053 AATATACACGTACACAATATACCCAAC 57.520 33.333 0.00 0.00 0.00 3.77
89 90 9.478768 CAAATATACACGTACACAATATACCCA 57.521 33.333 0.00 0.00 0.00 4.51
90 91 9.480053 ACAAATATACACGTACACAATATACCC 57.520 33.333 0.00 0.00 0.00 3.69
94 95 9.373603 ACACACAAATATACACGTACACAATAT 57.626 29.630 0.00 0.00 0.00 1.28
95 96 8.760103 ACACACAAATATACACGTACACAATA 57.240 30.769 0.00 0.00 0.00 1.90
96 97 7.661127 ACACACAAATATACACGTACACAAT 57.339 32.000 0.00 0.00 0.00 2.71
97 98 7.328982 CCTACACACAAATATACACGTACACAA 59.671 37.037 0.00 0.00 0.00 3.33
98 99 6.807720 CCTACACACAAATATACACGTACACA 59.192 38.462 0.00 0.00 0.00 3.72
99 100 6.254157 CCCTACACACAAATATACACGTACAC 59.746 42.308 0.00 0.00 0.00 2.90
100 101 6.331845 CCCTACACACAAATATACACGTACA 58.668 40.000 0.00 0.00 0.00 2.90
101 102 5.232838 GCCCTACACACAAATATACACGTAC 59.767 44.000 0.00 0.00 0.00 3.67
102 103 5.350633 GCCCTACACACAAATATACACGTA 58.649 41.667 0.00 0.00 0.00 3.57
103 104 4.186159 GCCCTACACACAAATATACACGT 58.814 43.478 0.00 0.00 0.00 4.49
104 105 3.558418 GGCCCTACACACAAATATACACG 59.442 47.826 0.00 0.00 0.00 4.49
105 106 3.881089 GGGCCCTACACACAAATATACAC 59.119 47.826 17.04 0.00 0.00 2.90
106 107 3.523972 TGGGCCCTACACACAAATATACA 59.476 43.478 25.70 0.00 0.00 2.29
107 108 3.881089 GTGGGCCCTACACACAAATATAC 59.119 47.826 25.70 2.94 38.67 1.47
108 109 3.117813 GGTGGGCCCTACACACAAATATA 60.118 47.826 25.70 0.00 40.54 0.86
109 110 2.357777 GGTGGGCCCTACACACAAATAT 60.358 50.000 25.70 0.00 40.54 1.28
110 111 1.004979 GGTGGGCCCTACACACAAATA 59.995 52.381 25.70 0.00 40.54 1.40
111 112 0.251608 GGTGGGCCCTACACACAAAT 60.252 55.000 25.70 0.00 40.54 2.32
112 113 1.151908 GGTGGGCCCTACACACAAA 59.848 57.895 25.70 0.00 40.54 2.83
113 114 1.772567 AGGTGGGCCCTACACACAA 60.773 57.895 25.70 0.00 43.87 3.33
114 115 2.122144 AGGTGGGCCCTACACACA 60.122 61.111 25.70 0.00 43.87 3.72
115 116 2.669240 GAGGTGGGCCCTACACAC 59.331 66.667 25.70 12.48 46.51 3.82
116 117 2.609610 GGAGGTGGGCCCTACACA 60.610 66.667 25.70 0.00 46.51 3.72
119 120 1.498176 AAACAGGAGGTGGGCCCTAC 61.498 60.000 25.70 18.94 46.51 3.18
120 121 1.151677 AAACAGGAGGTGGGCCCTA 60.152 57.895 25.70 6.58 46.51 3.53
122 123 2.035783 GAAACAGGAGGTGGGCCC 59.964 66.667 17.59 17.59 34.57 5.80
123 124 2.035783 GGAAACAGGAGGTGGGCC 59.964 66.667 0.00 0.00 0.00 5.80
124 125 0.178961 AAAGGAAACAGGAGGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
125 126 1.133482 ACAAAGGAAACAGGAGGTGGG 60.133 52.381 0.00 0.00 0.00 4.61
126 127 2.364972 ACAAAGGAAACAGGAGGTGG 57.635 50.000 0.00 0.00 0.00 4.61
127 128 5.805728 ACTATACAAAGGAAACAGGAGGTG 58.194 41.667 0.00 0.00 0.00 4.00
128 129 6.043938 TCAACTATACAAAGGAAACAGGAGGT 59.956 38.462 0.00 0.00 0.00 3.85
129 130 6.472887 TCAACTATACAAAGGAAACAGGAGG 58.527 40.000 0.00 0.00 0.00 4.30
130 131 6.595716 CCTCAACTATACAAAGGAAACAGGAG 59.404 42.308 0.00 0.00 0.00 3.69
131 132 6.043938 ACCTCAACTATACAAAGGAAACAGGA 59.956 38.462 0.00 0.00 0.00 3.86
132 133 6.238648 ACCTCAACTATACAAAGGAAACAGG 58.761 40.000 0.00 0.00 0.00 4.00
133 134 7.228706 ACAACCTCAACTATACAAAGGAAACAG 59.771 37.037 0.00 0.00 0.00 3.16
134 135 7.012894 CACAACCTCAACTATACAAAGGAAACA 59.987 37.037 0.00 0.00 0.00 2.83
135 136 7.360361 CACAACCTCAACTATACAAAGGAAAC 58.640 38.462 0.00 0.00 0.00 2.78
136 137 6.488683 CCACAACCTCAACTATACAAAGGAAA 59.511 38.462 0.00 0.00 0.00 3.13
137 138 6.001460 CCACAACCTCAACTATACAAAGGAA 58.999 40.000 0.00 0.00 0.00 3.36
138 139 5.556915 CCACAACCTCAACTATACAAAGGA 58.443 41.667 0.00 0.00 0.00 3.36
139 140 4.156008 GCCACAACCTCAACTATACAAAGG 59.844 45.833 0.00 0.00 0.00 3.11
140 141 4.156008 GGCCACAACCTCAACTATACAAAG 59.844 45.833 0.00 0.00 0.00 2.77
141 142 4.076394 GGCCACAACCTCAACTATACAAA 58.924 43.478 0.00 0.00 0.00 2.83
142 143 3.560453 GGGCCACAACCTCAACTATACAA 60.560 47.826 4.39 0.00 0.00 2.41
143 144 2.026636 GGGCCACAACCTCAACTATACA 60.027 50.000 4.39 0.00 0.00 2.29
144 145 2.026636 TGGGCCACAACCTCAACTATAC 60.027 50.000 0.00 0.00 0.00 1.47
145 146 2.026636 GTGGGCCACAACCTCAACTATA 60.027 50.000 31.26 0.00 34.08 1.31
146 147 1.072266 TGGGCCACAACCTCAACTAT 58.928 50.000 0.00 0.00 0.00 2.12
147 148 0.109723 GTGGGCCACAACCTCAACTA 59.890 55.000 31.26 0.00 34.08 2.24
148 149 1.152756 GTGGGCCACAACCTCAACT 60.153 57.895 31.26 0.00 34.08 3.16
149 150 2.200337 GGTGGGCCACAACCTCAAC 61.200 63.158 35.69 13.88 35.86 3.18
150 151 2.197324 GGTGGGCCACAACCTCAA 59.803 61.111 35.69 0.00 35.86 3.02
151 152 2.776526 AGGTGGGCCACAACCTCA 60.777 61.111 35.69 0.00 37.57 3.86
152 153 2.034221 GAGGTGGGCCACAACCTC 59.966 66.667 35.69 28.30 37.57 3.85
153 154 2.450502 AGAGGTGGGCCACAACCT 60.451 61.111 35.69 25.10 37.57 3.50
154 155 1.774894 TACAGAGGTGGGCCACAACC 61.775 60.000 35.69 23.20 37.57 3.77
155 156 0.605589 GTACAGAGGTGGGCCACAAC 60.606 60.000 35.69 26.97 35.86 3.32
156 157 0.766674 AGTACAGAGGTGGGCCACAA 60.767 55.000 35.69 12.29 35.86 3.33
157 158 0.766674 AAGTACAGAGGTGGGCCACA 60.767 55.000 35.69 13.58 35.86 4.17
158 159 1.272807 TAAGTACAGAGGTGGGCCAC 58.727 55.000 28.69 28.69 37.19 5.01
159 160 1.626825 GTTAAGTACAGAGGTGGGCCA 59.373 52.381 0.00 0.00 37.19 5.36
160 161 1.405121 CGTTAAGTACAGAGGTGGGCC 60.405 57.143 0.00 0.00 0.00 5.80
161 162 1.274447 ACGTTAAGTACAGAGGTGGGC 59.726 52.381 0.00 0.00 0.00 5.36
162 163 2.929592 GCACGTTAAGTACAGAGGTGGG 60.930 54.545 13.86 0.00 31.76 4.61
163 164 2.334838 GCACGTTAAGTACAGAGGTGG 58.665 52.381 13.86 0.00 31.76 4.61
164 165 2.029290 AGGCACGTTAAGTACAGAGGTG 60.029 50.000 0.00 3.87 33.61 4.00
165 166 2.029290 CAGGCACGTTAAGTACAGAGGT 60.029 50.000 0.00 0.00 0.00 3.85
166 167 2.607187 CAGGCACGTTAAGTACAGAGG 58.393 52.381 0.00 0.00 0.00 3.69
167 168 2.029290 ACCAGGCACGTTAAGTACAGAG 60.029 50.000 0.00 0.00 0.00 3.35
168 169 1.965643 ACCAGGCACGTTAAGTACAGA 59.034 47.619 0.00 0.00 0.00 3.41
169 170 2.066262 CACCAGGCACGTTAAGTACAG 58.934 52.381 0.00 0.00 0.00 2.74
170 171 1.874739 GCACCAGGCACGTTAAGTACA 60.875 52.381 0.00 0.00 43.97 2.90
171 172 0.794473 GCACCAGGCACGTTAAGTAC 59.206 55.000 0.00 0.00 43.97 2.73
172 173 3.220447 GCACCAGGCACGTTAAGTA 57.780 52.632 0.00 0.00 43.97 2.24
173 174 4.058797 GCACCAGGCACGTTAAGT 57.941 55.556 0.00 0.00 43.97 2.24
182 183 0.463654 TATTGATCGGTGCACCAGGC 60.464 55.000 34.16 21.79 45.13 4.85
183 184 1.299541 GTATTGATCGGTGCACCAGG 58.700 55.000 34.16 19.77 35.14 4.45
184 185 2.022764 TGTATTGATCGGTGCACCAG 57.977 50.000 34.16 25.45 35.14 4.00
185 186 2.560504 GATGTATTGATCGGTGCACCA 58.439 47.619 34.16 21.66 35.14 4.17
186 187 1.526887 CGATGTATTGATCGGTGCACC 59.473 52.381 26.78 26.78 41.29 5.01
187 188 2.469826 TCGATGTATTGATCGGTGCAC 58.530 47.619 8.80 8.80 44.41 4.57
188 189 2.360801 TCTCGATGTATTGATCGGTGCA 59.639 45.455 0.00 0.00 44.41 4.57
189 190 3.013276 TCTCGATGTATTGATCGGTGC 57.987 47.619 0.00 0.00 44.41 5.01
190 191 4.143242 GCAATCTCGATGTATTGATCGGTG 60.143 45.833 15.55 0.00 44.41 4.94
191 192 3.990469 GCAATCTCGATGTATTGATCGGT 59.010 43.478 15.55 0.00 44.41 4.69
192 193 3.989817 TGCAATCTCGATGTATTGATCGG 59.010 43.478 15.55 0.00 44.41 4.18
193 194 4.445385 TGTGCAATCTCGATGTATTGATCG 59.555 41.667 15.55 0.00 45.43 3.69
194 195 5.614231 GCTGTGCAATCTCGATGTATTGATC 60.614 44.000 15.55 9.54 35.53 2.92
195 196 4.212847 GCTGTGCAATCTCGATGTATTGAT 59.787 41.667 15.55 0.00 35.53 2.57
196 197 3.557185 GCTGTGCAATCTCGATGTATTGA 59.443 43.478 15.55 0.00 35.53 2.57
197 198 3.303593 GGCTGTGCAATCTCGATGTATTG 60.304 47.826 9.68 9.68 36.40 1.90
198 199 2.874701 GGCTGTGCAATCTCGATGTATT 59.125 45.455 0.00 0.00 0.00 1.89
199 200 2.487934 GGCTGTGCAATCTCGATGTAT 58.512 47.619 0.00 0.00 0.00 2.29
200 201 1.473257 GGGCTGTGCAATCTCGATGTA 60.473 52.381 0.00 0.00 0.00 2.29
201 202 0.745845 GGGCTGTGCAATCTCGATGT 60.746 55.000 0.00 0.00 0.00 3.06
202 203 0.745486 TGGGCTGTGCAATCTCGATG 60.745 55.000 0.00 0.00 0.00 3.84
203 204 0.182061 ATGGGCTGTGCAATCTCGAT 59.818 50.000 0.00 0.00 0.00 3.59
204 205 0.829990 TATGGGCTGTGCAATCTCGA 59.170 50.000 0.00 0.00 0.00 4.04
205 206 1.331756 GTTATGGGCTGTGCAATCTCG 59.668 52.381 0.00 0.00 0.00 4.04
206 207 2.648059 AGTTATGGGCTGTGCAATCTC 58.352 47.619 0.00 0.00 0.00 2.75
207 208 2.756760 CAAGTTATGGGCTGTGCAATCT 59.243 45.455 0.00 0.00 0.00 2.40
208 209 2.493278 ACAAGTTATGGGCTGTGCAATC 59.507 45.455 0.00 0.00 0.00 2.67
209 210 2.493278 GACAAGTTATGGGCTGTGCAAT 59.507 45.455 0.00 0.00 0.00 3.56
210 211 1.885887 GACAAGTTATGGGCTGTGCAA 59.114 47.619 0.00 0.00 0.00 4.08
211 212 1.533625 GACAAGTTATGGGCTGTGCA 58.466 50.000 0.00 0.00 0.00 4.57
212 213 0.811281 GGACAAGTTATGGGCTGTGC 59.189 55.000 0.00 0.00 0.00 4.57
213 214 2.496899 AGGACAAGTTATGGGCTGTG 57.503 50.000 0.00 0.00 0.00 3.66
214 215 2.644798 AGAAGGACAAGTTATGGGCTGT 59.355 45.455 0.00 0.00 0.00 4.40
215 216 3.356529 AGAAGGACAAGTTATGGGCTG 57.643 47.619 0.00 0.00 0.00 4.85
216 217 3.844211 TGTAGAAGGACAAGTTATGGGCT 59.156 43.478 0.00 0.00 0.00 5.19
217 218 4.216411 TGTAGAAGGACAAGTTATGGGC 57.784 45.455 0.00 0.00 0.00 5.36
218 219 5.556915 TGTTGTAGAAGGACAAGTTATGGG 58.443 41.667 0.00 0.00 39.93 4.00
219 220 6.485313 TGTTGTTGTAGAAGGACAAGTTATGG 59.515 38.462 0.00 0.00 39.93 2.74
220 221 7.441157 TCTGTTGTTGTAGAAGGACAAGTTATG 59.559 37.037 0.00 0.00 39.93 1.90
221 222 7.506114 TCTGTTGTTGTAGAAGGACAAGTTAT 58.494 34.615 0.00 0.00 39.93 1.89
222 223 6.880484 TCTGTTGTTGTAGAAGGACAAGTTA 58.120 36.000 0.00 0.00 39.93 2.24
223 224 5.741011 TCTGTTGTTGTAGAAGGACAAGTT 58.259 37.500 0.00 0.00 39.93 2.66
224 225 5.353394 TCTGTTGTTGTAGAAGGACAAGT 57.647 39.130 0.00 0.00 39.93 3.16
225 226 6.591834 CCTATCTGTTGTTGTAGAAGGACAAG 59.408 42.308 0.00 0.00 39.93 3.16
226 227 6.269077 TCCTATCTGTTGTTGTAGAAGGACAA 59.731 38.462 0.00 0.00 36.98 3.18
227 228 5.778241 TCCTATCTGTTGTTGTAGAAGGACA 59.222 40.000 0.00 0.00 31.44 4.02
228 229 6.282199 TCCTATCTGTTGTTGTAGAAGGAC 57.718 41.667 0.00 0.00 31.44 3.85
229 230 6.497259 ACTTCCTATCTGTTGTTGTAGAAGGA 59.503 38.462 0.00 0.00 32.98 3.36
230 231 6.702329 ACTTCCTATCTGTTGTTGTAGAAGG 58.298 40.000 0.00 0.00 0.00 3.46
231 232 9.877178 AATACTTCCTATCTGTTGTTGTAGAAG 57.123 33.333 0.00 0.00 0.00 2.85
235 236 9.880157 GGTAAATACTTCCTATCTGTTGTTGTA 57.120 33.333 0.00 0.00 0.00 2.41
236 237 7.827729 GGGTAAATACTTCCTATCTGTTGTTGT 59.172 37.037 0.00 0.00 0.00 3.32
237 238 8.047310 AGGGTAAATACTTCCTATCTGTTGTTG 58.953 37.037 0.00 0.00 0.00 3.33
238 239 8.047310 CAGGGTAAATACTTCCTATCTGTTGTT 58.953 37.037 0.00 0.00 0.00 2.83
239 240 7.402071 TCAGGGTAAATACTTCCTATCTGTTGT 59.598 37.037 0.00 0.00 0.00 3.32
240 241 7.792032 TCAGGGTAAATACTTCCTATCTGTTG 58.208 38.462 0.00 0.00 0.00 3.33
241 242 7.989947 TCAGGGTAAATACTTCCTATCTGTT 57.010 36.000 0.00 0.00 0.00 3.16
242 243 7.624077 ACTTCAGGGTAAATACTTCCTATCTGT 59.376 37.037 0.00 0.00 0.00 3.41
243 244 7.928706 CACTTCAGGGTAAATACTTCCTATCTG 59.071 40.741 0.00 0.00 0.00 2.90
244 245 7.844779 TCACTTCAGGGTAAATACTTCCTATCT 59.155 37.037 0.00 0.00 0.00 1.98
245 246 7.927092 GTCACTTCAGGGTAAATACTTCCTATC 59.073 40.741 0.00 0.00 0.00 2.08
246 247 7.624077 AGTCACTTCAGGGTAAATACTTCCTAT 59.376 37.037 0.00 0.00 0.00 2.57
247 248 6.958192 AGTCACTTCAGGGTAAATACTTCCTA 59.042 38.462 0.00 0.00 0.00 2.94
248 249 5.785940 AGTCACTTCAGGGTAAATACTTCCT 59.214 40.000 0.00 0.00 0.00 3.36
249 250 6.051179 AGTCACTTCAGGGTAAATACTTCC 57.949 41.667 0.00 0.00 0.00 3.46
250 251 9.668497 ATTAAGTCACTTCAGGGTAAATACTTC 57.332 33.333 0.00 0.00 0.00 3.01
251 252 9.668497 GATTAAGTCACTTCAGGGTAAATACTT 57.332 33.333 0.00 0.00 0.00 2.24
252 253 8.822805 TGATTAAGTCACTTCAGGGTAAATACT 58.177 33.333 0.00 0.00 0.00 2.12
253 254 9.444600 TTGATTAAGTCACTTCAGGGTAAATAC 57.555 33.333 0.00 0.00 36.32 1.89
254 255 9.667107 CTTGATTAAGTCACTTCAGGGTAAATA 57.333 33.333 0.00 0.00 36.32 1.40
258 259 6.042781 ACACTTGATTAAGTCACTTCAGGGTA 59.957 38.462 0.00 0.00 45.12 3.69
259 260 5.163195 ACACTTGATTAAGTCACTTCAGGGT 60.163 40.000 0.00 0.00 45.12 4.34
262 263 6.851222 ACACACTTGATTAAGTCACTTCAG 57.149 37.500 0.00 0.00 45.12 3.02
271 272 4.323417 TGCAGGGTACACACTTGATTAAG 58.677 43.478 0.00 0.00 39.86 1.85
272 273 4.359434 TGCAGGGTACACACTTGATTAA 57.641 40.909 0.00 0.00 0.00 1.40
274 275 2.949177 TGCAGGGTACACACTTGATT 57.051 45.000 0.00 0.00 0.00 2.57
275 276 2.618816 CCATGCAGGGTACACACTTGAT 60.619 50.000 9.85 0.00 0.00 2.57
276 277 1.271325 CCATGCAGGGTACACACTTGA 60.271 52.381 9.85 0.00 0.00 3.02
277 278 1.167851 CCATGCAGGGTACACACTTG 58.832 55.000 9.85 0.00 0.00 3.16
280 281 1.003118 TCTTCCATGCAGGGTACACAC 59.997 52.381 18.43 0.00 38.24 3.82
281 282 1.278985 CTCTTCCATGCAGGGTACACA 59.721 52.381 18.43 0.00 38.24 3.72
282 283 1.555075 TCTCTTCCATGCAGGGTACAC 59.445 52.381 18.43 0.00 38.24 2.90
284 285 3.118261 TGATTCTCTTCCATGCAGGGTAC 60.118 47.826 18.43 0.00 38.24 3.34
293 294 6.614906 AGAGTATGGACTTGATTCTCTTCCAT 59.385 38.462 14.17 14.17 46.58 3.41
306 307 8.837389 GTTGTTAAACAAGAAGAGTATGGACTT 58.163 33.333 0.00 0.00 39.00 3.01
308 309 7.170320 TCGTTGTTAAACAAGAAGAGTATGGAC 59.830 37.037 0.00 0.00 39.00 4.02
310 311 7.416154 TCGTTGTTAAACAAGAAGAGTATGG 57.584 36.000 0.00 0.00 39.00 2.74
311 312 8.009974 CCTTCGTTGTTAAACAAGAAGAGTATG 58.990 37.037 17.60 4.18 41.00 2.39
313 314 7.267128 TCCTTCGTTGTTAAACAAGAAGAGTA 58.733 34.615 17.60 6.33 41.00 2.59
317 318 7.414436 TGATTCCTTCGTTGTTAAACAAGAAG 58.586 34.615 4.70 4.70 39.00 2.85
365 366 4.414846 TCCTAATCCGACTCTACCTTACCT 59.585 45.833 0.00 0.00 0.00 3.08
366 367 4.518590 GTCCTAATCCGACTCTACCTTACC 59.481 50.000 0.00 0.00 0.00 2.85
367 368 5.128919 TGTCCTAATCCGACTCTACCTTAC 58.871 45.833 0.00 0.00 0.00 2.34
368 369 5.378230 TGTCCTAATCCGACTCTACCTTA 57.622 43.478 0.00 0.00 0.00 2.69
369 370 4.246712 TGTCCTAATCCGACTCTACCTT 57.753 45.455 0.00 0.00 0.00 3.50
393 394 8.818860 AGAACAGGTGTATGTGTATACCTTTTA 58.181 33.333 0.00 0.00 46.67 1.52
409 410 2.307768 TCAGAGTTCGAGAACAGGTGT 58.692 47.619 17.00 0.00 43.47 4.16
415 416 4.561105 ACTTGGAATCAGAGTTCGAGAAC 58.439 43.478 7.83 7.83 41.45 3.01
419 420 2.897326 TGGACTTGGAATCAGAGTTCGA 59.103 45.455 0.00 0.00 0.00 3.71
430 431 6.041409 TGAGTTGCATAAATTTGGACTTGGAA 59.959 34.615 0.00 0.00 0.00 3.53
440 441 9.553064 CTAGGTAGATCTGAGTTGCATAAATTT 57.447 33.333 5.18 0.00 0.00 1.82
448 449 6.975772 CAGTTAACTAGGTAGATCTGAGTTGC 59.024 42.308 8.04 12.60 32.75 4.17
538 539 5.482526 TGATTGACTACTTAGCTGGTAACCA 59.517 40.000 0.00 0.00 0.00 3.67
556 557 4.202233 TGCATTGACTTTGCCTTTGATTGA 60.202 37.500 0.00 0.00 39.39 2.57
634 635 2.362369 GCAGGGAGTCAGCTAGGCA 61.362 63.158 0.00 0.00 0.00 4.75
650 651 1.971167 CAGCAAGGCTAAACCCGCA 60.971 57.895 0.00 0.00 39.37 5.69
655 656 1.604604 TGGTGTCAGCAAGGCTAAAC 58.395 50.000 1.29 0.00 36.40 2.01
656 657 1.953686 GTTGGTGTCAGCAAGGCTAAA 59.046 47.619 17.48 0.00 36.40 1.85
657 658 1.133945 TGTTGGTGTCAGCAAGGCTAA 60.134 47.619 17.48 0.00 36.40 3.09
658 659 0.472044 TGTTGGTGTCAGCAAGGCTA 59.528 50.000 17.48 2.79 36.40 3.93
721 722 3.220110 TGGCGAACCGACTTCTATATCT 58.780 45.455 0.00 0.00 39.70 1.98
722 723 3.637998 TGGCGAACCGACTTCTATATC 57.362 47.619 0.00 0.00 39.70 1.63
723 724 3.306088 CCATGGCGAACCGACTTCTATAT 60.306 47.826 0.00 0.00 39.70 0.86
724 725 2.035449 CCATGGCGAACCGACTTCTATA 59.965 50.000 0.00 0.00 39.70 1.31
725 726 1.202533 CCATGGCGAACCGACTTCTAT 60.203 52.381 0.00 0.00 39.70 1.98
726 727 0.174845 CCATGGCGAACCGACTTCTA 59.825 55.000 0.00 0.00 39.70 2.10
729 730 1.079127 CTCCATGGCGAACCGACTT 60.079 57.895 6.96 0.00 39.70 3.01
730 731 1.827399 AACTCCATGGCGAACCGACT 61.827 55.000 9.17 0.00 39.70 4.18
732 733 1.375396 CAACTCCATGGCGAACCGA 60.375 57.895 9.17 0.00 39.70 4.69
733 734 1.635663 GACAACTCCATGGCGAACCG 61.636 60.000 9.17 0.00 39.70 4.44
734 735 0.321653 AGACAACTCCATGGCGAACC 60.322 55.000 9.17 0.00 31.91 3.62
735 736 2.271800 CTAGACAACTCCATGGCGAAC 58.728 52.381 9.17 0.00 31.91 3.95
745 746 6.688578 TCTTTCACATGGTACTAGACAACTC 58.311 40.000 0.00 0.00 0.00 3.01
809 810 3.883489 GCTTTGGTCAACTACTGTTCCTT 59.117 43.478 0.00 0.00 33.52 3.36
824 825 2.656947 TCTTGTTAGCTGGCTTTGGT 57.343 45.000 0.00 0.00 0.00 3.67
839 840 9.605275 TTGATCATCCTAATTACACTCTTCTTG 57.395 33.333 0.00 0.00 0.00 3.02
856 857 3.131396 ACGTATCGCCTTTTGATCATCC 58.869 45.455 0.00 0.00 0.00 3.51
870 871 1.465777 GTGGGTTTGGGAAACGTATCG 59.534 52.381 0.00 0.00 42.29 2.92
876 877 2.043227 TGGATTGTGGGTTTGGGAAAC 58.957 47.619 0.00 0.00 40.65 2.78
880 881 1.618343 GTCTTGGATTGTGGGTTTGGG 59.382 52.381 0.00 0.00 0.00 4.12
899 900 7.613022 ACTGGATTCATGATGAGTTGTTTATGT 59.387 33.333 0.00 0.00 0.00 2.29
909 910 5.608449 TGAGCTTACTGGATTCATGATGAG 58.392 41.667 0.00 0.00 0.00 2.90
913 914 4.141846 GGTCTGAGCTTACTGGATTCATGA 60.142 45.833 0.00 0.00 0.00 3.07
1009 1010 1.537348 GGTAGTGACGTGCAGTTGTGA 60.537 52.381 0.00 0.00 0.00 3.58
1010 1011 0.859232 GGTAGTGACGTGCAGTTGTG 59.141 55.000 0.00 0.00 0.00 3.33
1011 1012 0.462375 TGGTAGTGACGTGCAGTTGT 59.538 50.000 0.00 0.00 0.00 3.32
1012 1013 1.577468 TTGGTAGTGACGTGCAGTTG 58.423 50.000 0.00 0.00 0.00 3.16
1013 1014 1.937899 GTTTGGTAGTGACGTGCAGTT 59.062 47.619 0.00 0.00 0.00 3.16
1014 1015 1.134640 TGTTTGGTAGTGACGTGCAGT 60.135 47.619 0.00 0.00 0.00 4.40
1015 1016 1.526887 CTGTTTGGTAGTGACGTGCAG 59.473 52.381 0.00 0.00 0.00 4.41
1016 1017 1.137282 TCTGTTTGGTAGTGACGTGCA 59.863 47.619 0.00 0.00 0.00 4.57
1017 1018 1.792949 CTCTGTTTGGTAGTGACGTGC 59.207 52.381 0.00 0.00 0.00 5.34
1018 1019 3.364889 TCTCTGTTTGGTAGTGACGTG 57.635 47.619 0.00 0.00 0.00 4.49
1019 1020 4.602340 ATTCTCTGTTTGGTAGTGACGT 57.398 40.909 0.00 0.00 0.00 4.34
1020 1021 6.565234 AGATATTCTCTGTTTGGTAGTGACG 58.435 40.000 0.00 0.00 31.12 4.35
1021 1022 7.548097 TGAGATATTCTCTGTTTGGTAGTGAC 58.452 38.462 6.13 0.00 43.73 3.67
1081 1082 6.059787 AGCAAGGTTGAGATATTCTCTGTT 57.940 37.500 6.13 0.00 43.73 3.16
1083 1084 5.695816 GCTAGCAAGGTTGAGATATTCTCTG 59.304 44.000 10.63 0.00 43.73 3.35
1084 1085 5.221621 GGCTAGCAAGGTTGAGATATTCTCT 60.222 44.000 18.24 0.00 43.73 3.10
1086 1087 4.202409 GGGCTAGCAAGGTTGAGATATTCT 60.202 45.833 18.24 0.00 0.00 2.40
1087 1088 4.068599 GGGCTAGCAAGGTTGAGATATTC 58.931 47.826 18.24 0.00 0.00 1.75
1088 1089 3.718956 AGGGCTAGCAAGGTTGAGATATT 59.281 43.478 18.24 0.00 0.00 1.28
1089 1090 3.072184 CAGGGCTAGCAAGGTTGAGATAT 59.928 47.826 18.24 0.00 0.00 1.63
1090 1091 2.435805 CAGGGCTAGCAAGGTTGAGATA 59.564 50.000 18.24 0.00 0.00 1.98
1091 1092 1.211457 CAGGGCTAGCAAGGTTGAGAT 59.789 52.381 18.24 0.00 0.00 2.75
1092 1093 0.615331 CAGGGCTAGCAAGGTTGAGA 59.385 55.000 18.24 0.00 0.00 3.27
1093 1094 0.326264 ACAGGGCTAGCAAGGTTGAG 59.674 55.000 18.24 0.00 0.00 3.02
1094 1095 0.036732 CACAGGGCTAGCAAGGTTGA 59.963 55.000 18.24 0.00 0.00 3.18
1162 1195 2.174349 GAGTTCTTTGGCAGCGCG 59.826 61.111 0.00 0.00 0.00 6.86
1171 1204 3.562176 GGTGGATCATGTGGGAGTTCTTT 60.562 47.826 0.00 0.00 0.00 2.52
1219 1252 1.134995 GTGTCATCGCAGGAGATCACA 60.135 52.381 0.00 0.00 29.18 3.58
1223 1256 0.904649 TTGGTGTCATCGCAGGAGAT 59.095 50.000 0.00 0.00 0.00 2.75
1315 6105 3.664107 CTTACAGCAGTAGGTCTTGCAA 58.336 45.455 0.00 0.00 0.00 4.08
1389 6194 9.529325 TCGACTTCTTAATTTGTATGGACATAG 57.471 33.333 0.00 0.00 34.86 2.23
1401 6206 8.738645 ATTTAGGCATCTCGACTTCTTAATTT 57.261 30.769 0.00 0.00 32.25 1.82
1449 6281 0.108756 GGGGTAGAAGTCGCACACTC 60.109 60.000 0.00 0.00 32.30 3.51
1747 6579 3.756082 AGGTTGGCAGGGATTTCAATA 57.244 42.857 0.00 0.00 0.00 1.90
1793 6625 0.036306 GTGACGGTCAACCCTGGAAT 59.964 55.000 13.23 0.00 0.00 3.01
1880 6712 0.979709 TCCTCCTCAGTGATGGGCAG 60.980 60.000 0.00 0.00 0.00 4.85
2042 6874 0.253044 ACCGGCATGTTAGCAGTCAT 59.747 50.000 0.00 0.00 35.83 3.06
2107 6939 1.597854 CCTTGCCACTTCGCAGTCA 60.598 57.895 0.00 0.00 40.53 3.41
2175 7007 2.279842 GGCCACATTGAAGCCACAT 58.720 52.632 14.23 0.00 46.34 3.21
2229 7061 4.866508 ATCAACTACTTCTGTCCGTGAA 57.133 40.909 0.00 0.00 0.00 3.18
2374 7211 4.270834 AGCTCTAGGTTATCACGAGTTCA 58.729 43.478 0.00 0.00 0.00 3.18
2423 7260 5.354792 GGAGGGAGCAAGTATATACGTAGAG 59.645 48.000 7.23 0.00 0.00 2.43
2429 7266 4.398673 CGTAGGGAGGGAGCAAGTATATAC 59.601 50.000 4.60 4.60 0.00 1.47
2459 7296 8.095287 ACAAATTTTAAAGTCAAACGTACACG 57.905 30.769 0.00 0.00 46.33 4.49
2465 7302 7.513190 TGTGGACAAATTTTAAAGTCAAACG 57.487 32.000 8.22 0.00 32.79 3.60
2538 7377 3.512033 ACCGTGTGATAAGAGAGAAGC 57.488 47.619 0.00 0.00 0.00 3.86
2539 7378 6.796426 TGATTACCGTGTGATAAGAGAGAAG 58.204 40.000 0.00 0.00 0.00 2.85
2548 7387 5.408880 TTGGTCTTGATTACCGTGTGATA 57.591 39.130 0.00 0.00 40.08 2.15
2596 7435 7.322664 CCAATGACCTAAGTGCATGTAAAAAT 58.677 34.615 0.00 0.00 0.00 1.82
2600 7439 4.269183 CCCAATGACCTAAGTGCATGTAA 58.731 43.478 0.00 0.00 0.00 2.41
2641 7480 2.178890 GCAAGCCGCCATCTCTCTG 61.179 63.158 0.00 0.00 32.94 3.35
2652 7491 1.352114 CATTGGAAATGTGCAAGCCG 58.648 50.000 0.00 0.00 38.60 5.52
2732 7571 3.432378 AGTTAGGCATATACTCCCTCCG 58.568 50.000 0.00 0.00 0.00 4.63
2764 7603 4.830600 GTCCAACCCTTCCAGTTTTCATTA 59.169 41.667 0.00 0.00 0.00 1.90
2775 7614 4.699522 AGCGCGTCCAACCCTTCC 62.700 66.667 8.43 0.00 0.00 3.46
2798 7637 0.888619 TCAAACAACACCAACGGCAA 59.111 45.000 0.00 0.00 0.00 4.52
2799 7638 1.107114 ATCAAACAACACCAACGGCA 58.893 45.000 0.00 0.00 0.00 5.69
2920 7759 7.928103 AGTTCATTTCATGATGAGTCTAATGC 58.072 34.615 11.02 1.83 39.39 3.56
2925 7764 6.719301 AGGAAGTTCATTTCATGATGAGTCT 58.281 36.000 5.01 0.00 39.39 3.24
2959 7798 8.673711 CGAAAAATTCCAGATCCACAATACTAA 58.326 33.333 0.00 0.00 0.00 2.24
2984 7823 8.495949 TCTTTAACTTTTATCAAGTTCAGAGCG 58.504 33.333 3.27 0.00 40.58 5.03
3028 7867 4.017867 CCCCCTCAGTTCCAAAATAAGGTA 60.018 45.833 0.00 0.00 0.00 3.08
3075 7914 4.511826 AGAAAGGAAACACACTTCATCGTC 59.488 41.667 0.00 0.00 0.00 4.20
3092 7931 9.825972 CATAACACCGCATTATAAATAGAAAGG 57.174 33.333 0.00 0.00 0.00 3.11
3097 7936 7.361713 CCCACCATAACACCGCATTATAAATAG 60.362 40.741 0.00 0.00 0.00 1.73
3109 7948 0.610785 AAAGGCCCACCATAACACCG 60.611 55.000 0.00 0.00 39.06 4.94
3138 7977 5.353123 GGTTGATTAGCAGATAACACCGAAA 59.647 40.000 0.00 0.00 0.00 3.46
3171 8010 2.125673 GTAGCCACCGACGCACAT 60.126 61.111 0.00 0.00 0.00 3.21
3172 8011 1.596895 TATGTAGCCACCGACGCACA 61.597 55.000 0.00 0.00 0.00 4.57
3173 8012 0.249322 ATATGTAGCCACCGACGCAC 60.249 55.000 0.00 0.00 0.00 5.34
3207 8058 6.534475 AAGAATGCCAACATGTGATATTGT 57.466 33.333 0.00 0.00 36.36 2.71
3210 8061 7.844009 AGAAAAAGAATGCCAACATGTGATAT 58.156 30.769 0.00 0.00 36.36 1.63
3228 8079 3.328050 ACCCTCTCACCACCTAGAAAAAG 59.672 47.826 0.00 0.00 0.00 2.27
3229 8080 3.072476 CACCCTCTCACCACCTAGAAAAA 59.928 47.826 0.00 0.00 0.00 1.94
3272 8123 2.414840 ATTCAACAACAACCGGCCGC 62.415 55.000 22.85 0.00 0.00 6.53
3273 8124 0.662970 CATTCAACAACAACCGGCCG 60.663 55.000 21.04 21.04 0.00 6.13
3278 8129 9.701355 CTTTTTACAAATCATTCAACAACAACC 57.299 29.630 0.00 0.00 0.00 3.77
3287 8138 7.213678 GGGTCAACCTTTTTACAAATCATTCA 58.786 34.615 0.00 0.00 35.85 2.57
3290 8141 5.279256 CCGGGTCAACCTTTTTACAAATCAT 60.279 40.000 0.00 0.00 36.97 2.45
3313 8164 4.698304 TGGATTTGGTTAACGATTCTGACC 59.302 41.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.