Multiple sequence alignment - TraesCS3B01G586000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G586000 chr3B 100.000 3064 0 0 1 3064 812683817 812680754 0.000000e+00 5659
1 TraesCS3B01G586000 chr3B 78.743 668 136 5 1340 2004 812722018 812721354 2.800000e-120 442
2 TraesCS3B01G586000 chr3A 91.013 1925 117 29 170 2073 735845232 735847121 0.000000e+00 2545
3 TraesCS3B01G586000 chr3A 79.910 667 130 4 1340 2004 735981618 735980954 1.280000e-133 486
4 TraesCS3B01G586000 chr3A 78.711 667 129 9 1340 2004 737181150 737181805 1.690000e-117 433
5 TraesCS3B01G586000 chr3A 92.437 238 16 2 2801 3038 735849234 735849469 3.780000e-89 339
6 TraesCS3B01G586000 chr3A 89.080 174 14 5 1 170 735845025 735845197 8.610000e-51 211
7 TraesCS3B01G586000 chr3A 82.684 231 24 9 2260 2478 735847630 735847856 1.120000e-44 191
8 TraesCS3B01G586000 chr3D 93.771 1509 79 6 579 2076 604892618 604891114 0.000000e+00 2252
9 TraesCS3B01G586000 chr3D 84.201 576 36 11 2117 2643 604891109 604890540 2.730000e-140 508
10 TraesCS3B01G586000 chr3D 79.233 626 126 4 1340 1963 605026829 605026206 1.690000e-117 433
11 TraesCS3B01G586000 chr3D 78.507 670 134 10 1340 2004 604968073 604967409 6.070000e-117 431
12 TraesCS3B01G586000 chr3D 76.966 712 154 9 1340 2046 605034679 605035385 6.160000e-107 398
13 TraesCS3B01G586000 chrUn 78.726 691 135 8 1339 2023 46203794 46204478 4.660000e-123 451
14 TraesCS3B01G586000 chr4D 75.562 667 150 8 1340 2003 484929889 484929233 1.770000e-82 316
15 TraesCS3B01G586000 chr5A 75.672 670 141 10 1340 2004 666116693 666116041 6.380000e-82 315
16 TraesCS3B01G586000 chr5A 74.925 666 147 15 1340 1996 666073510 666072856 1.390000e-73 287
17 TraesCS3B01G586000 chr4B 96.450 169 6 0 2639 2807 431792151 431792319 2.330000e-71 279
18 TraesCS3B01G586000 chr2B 96.450 169 6 0 2637 2805 713695964 713695796 2.330000e-71 279
19 TraesCS3B01G586000 chr2B 96.933 163 5 0 2642 2804 664125038 664125200 1.080000e-69 274
20 TraesCS3B01G586000 chr7B 96.933 163 5 0 2642 2804 497576786 497576624 1.080000e-69 274
21 TraesCS3B01G586000 chr1B 96.933 163 5 0 2642 2804 52616714 52616876 1.080000e-69 274
22 TraesCS3B01G586000 chr1B 96.364 165 6 0 2640 2804 397443002 397443166 3.890000e-69 272
23 TraesCS3B01G586000 chr5B 96.364 165 6 0 2641 2805 646470166 646470330 3.890000e-69 272
24 TraesCS3B01G586000 chr5B 95.808 167 7 0 2639 2805 182470952 182471118 1.400000e-68 270
25 TraesCS3B01G586000 chr6D 94.828 174 8 1 2633 2805 24998368 24998195 1.400000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G586000 chr3B 812680754 812683817 3063 True 5659.0 5659 100.0000 1 3064 1 chr3B.!!$R1 3063
1 TraesCS3B01G586000 chr3B 812721354 812722018 664 True 442.0 442 78.7430 1340 2004 1 chr3B.!!$R2 664
2 TraesCS3B01G586000 chr3A 735845025 735849469 4444 False 821.5 2545 88.8035 1 3038 4 chr3A.!!$F2 3037
3 TraesCS3B01G586000 chr3A 735980954 735981618 664 True 486.0 486 79.9100 1340 2004 1 chr3A.!!$R1 664
4 TraesCS3B01G586000 chr3A 737181150 737181805 655 False 433.0 433 78.7110 1340 2004 1 chr3A.!!$F1 664
5 TraesCS3B01G586000 chr3D 604890540 604892618 2078 True 1380.0 2252 88.9860 579 2643 2 chr3D.!!$R3 2064
6 TraesCS3B01G586000 chr3D 605026206 605026829 623 True 433.0 433 79.2330 1340 1963 1 chr3D.!!$R2 623
7 TraesCS3B01G586000 chr3D 604967409 604968073 664 True 431.0 431 78.5070 1340 2004 1 chr3D.!!$R1 664
8 TraesCS3B01G586000 chr3D 605034679 605035385 706 False 398.0 398 76.9660 1340 2046 1 chr3D.!!$F1 706
9 TraesCS3B01G586000 chrUn 46203794 46204478 684 False 451.0 451 78.7260 1339 2023 1 chrUn.!!$F1 684
10 TraesCS3B01G586000 chr4D 484929233 484929889 656 True 316.0 316 75.5620 1340 2003 1 chr4D.!!$R1 663
11 TraesCS3B01G586000 chr5A 666116041 666116693 652 True 315.0 315 75.6720 1340 2004 1 chr5A.!!$R2 664
12 TraesCS3B01G586000 chr5A 666072856 666073510 654 True 287.0 287 74.9250 1340 1996 1 chr5A.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.099791 AAACCGACACCAAGCAAACG 59.900 50.0 0.00 0.0 0.0 3.60 F
735 793 0.107214 CATGGATGTAACGTGGGCCT 60.107 55.0 4.53 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 1895 0.510359 CAAGTGAGCAAGACAGTCGC 59.490 55.0 0.00 0.0 0.0 5.19 R
2099 2172 0.033920 TTCATGTCTGACTGCGTGCT 59.966 50.0 9.51 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 0.099791 AAACCGACACCAAGCAAACG 59.900 50.000 0.00 0.00 0.00 3.60
86 87 3.560636 AACGGGCTTTGCTACATCTAT 57.439 42.857 0.00 0.00 0.00 1.98
125 126 1.347707 CCTACACAAGAGCTGGGTTGA 59.652 52.381 0.00 0.00 39.23 3.18
126 127 2.026822 CCTACACAAGAGCTGGGTTGAT 60.027 50.000 0.00 0.00 39.23 2.57
133 134 5.699915 CACAAGAGCTGGGTTGATATGATAG 59.300 44.000 0.00 0.00 0.00 2.08
136 137 5.158141 AGAGCTGGGTTGATATGATAGGAA 58.842 41.667 0.00 0.00 0.00 3.36
137 138 5.248020 AGAGCTGGGTTGATATGATAGGAAG 59.752 44.000 0.00 0.00 0.00 3.46
139 143 5.608437 AGCTGGGTTGATATGATAGGAAGAA 59.392 40.000 0.00 0.00 0.00 2.52
205 247 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
207 249 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
208 250 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
212 254 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
214 256 5.276440 AGAGAGAGAGAGAGAGAGAGAGTT 58.724 45.833 0.00 0.00 0.00 3.01
216 258 6.897966 AGAGAGAGAGAGAGAGAGAGAGTTTA 59.102 42.308 0.00 0.00 0.00 2.01
217 259 7.566879 AGAGAGAGAGAGAGAGAGAGAGTTTAT 59.433 40.741 0.00 0.00 0.00 1.40
220 262 8.783660 AGAGAGAGAGAGAGAGAGTTTATAGA 57.216 38.462 0.00 0.00 0.00 1.98
221 263 8.643324 AGAGAGAGAGAGAGAGAGTTTATAGAC 58.357 40.741 0.00 0.00 0.00 2.59
277 322 1.944024 TGCCAAGTAAACAACTCGTGG 59.056 47.619 0.00 0.00 38.61 4.94
297 342 2.031258 GCTCTGGCCTAAGTTTCCTC 57.969 55.000 3.32 0.00 0.00 3.71
298 343 1.557371 GCTCTGGCCTAAGTTTCCTCT 59.443 52.381 3.32 0.00 0.00 3.69
316 361 2.196997 CTCGGGGCTTGGATGGTTGA 62.197 60.000 0.00 0.00 0.00 3.18
318 363 1.384191 GGGGCTTGGATGGTTGAGT 59.616 57.895 0.00 0.00 0.00 3.41
319 364 0.623723 GGGGCTTGGATGGTTGAGTA 59.376 55.000 0.00 0.00 0.00 2.59
338 392 5.636903 AGTATGGACTCAATAGCATGGTT 57.363 39.130 1.12 0.00 0.00 3.67
377 431 9.520204 AACATGTGAAGTTCTTTACATTTCTTG 57.480 29.630 16.51 11.19 31.84 3.02
381 435 7.556275 TGTGAAGTTCTTTACATTTCTTGGTCT 59.444 33.333 4.17 0.00 0.00 3.85
382 436 9.052759 GTGAAGTTCTTTACATTTCTTGGTCTA 57.947 33.333 4.17 0.00 0.00 2.59
484 538 6.764085 CGGGAATAGTATGAAAACCACACATA 59.236 38.462 0.00 0.00 0.00 2.29
506 561 8.815912 ACATATATTTGGCCTATTTTGGATTCC 58.184 33.333 3.32 0.00 0.00 3.01
558 613 2.875087 TACGATAACCATGTGACCCG 57.125 50.000 0.00 0.00 0.00 5.28
559 614 0.177141 ACGATAACCATGTGACCCGG 59.823 55.000 0.00 0.00 0.00 5.73
568 623 1.892474 CATGTGACCCGGTTTTGGATT 59.108 47.619 0.00 0.00 0.00 3.01
571 626 2.766828 TGTGACCCGGTTTTGGATTTTT 59.233 40.909 0.00 0.00 0.00 1.94
675 733 3.826729 AGCCAAACACTATCTTCCAAACC 59.173 43.478 0.00 0.00 0.00 3.27
734 792 0.107410 TCATGGATGTAACGTGGGCC 60.107 55.000 0.00 0.00 0.00 5.80
735 793 0.107214 CATGGATGTAACGTGGGCCT 60.107 55.000 4.53 0.00 0.00 5.19
856 916 5.796350 AGAGGGAACAAATTTCGTAATCG 57.204 39.130 0.00 0.00 38.55 3.34
885 945 1.725641 TTAGCAAGCACTCATGGACG 58.274 50.000 0.00 0.00 0.00 4.79
967 1029 4.095483 CGTTAACGTACTACACCCATCTCT 59.905 45.833 19.75 0.00 34.11 3.10
1095 1161 1.448893 GCCGTCCAACTTCGCCATA 60.449 57.895 0.00 0.00 0.00 2.74
1490 1563 4.939399 GCCCATTTCATTGGCACC 57.061 55.556 0.00 0.00 44.70 5.01
1654 1727 1.370437 CCATCGATCTCCCTGCCAG 59.630 63.158 0.00 0.00 0.00 4.85
1822 1895 2.882876 CTACGGTGTCACGGAGGG 59.117 66.667 16.66 3.40 41.08 4.30
2076 2149 6.164176 AGTGATAGTTGAAGTACTTTTCCGG 58.836 40.000 10.02 0.00 0.00 5.14
2077 2150 4.933400 TGATAGTTGAAGTACTTTTCCGGC 59.067 41.667 10.02 0.00 0.00 6.13
2078 2151 3.487120 AGTTGAAGTACTTTTCCGGCT 57.513 42.857 10.02 0.57 0.00 5.52
2079 2152 4.612264 AGTTGAAGTACTTTTCCGGCTA 57.388 40.909 10.02 0.00 0.00 3.93
2080 2153 4.566987 AGTTGAAGTACTTTTCCGGCTAG 58.433 43.478 10.02 0.00 0.00 3.42
2081 2154 4.282703 AGTTGAAGTACTTTTCCGGCTAGA 59.717 41.667 10.02 0.00 0.00 2.43
2082 2155 4.184079 TGAAGTACTTTTCCGGCTAGAC 57.816 45.455 10.02 0.00 0.00 2.59
2083 2156 2.935481 AGTACTTTTCCGGCTAGACG 57.065 50.000 12.22 12.22 0.00 4.18
2084 2157 2.165998 AGTACTTTTCCGGCTAGACGT 58.834 47.619 18.49 0.00 0.00 4.34
2085 2158 2.560105 AGTACTTTTCCGGCTAGACGTT 59.440 45.455 18.49 0.00 0.00 3.99
2086 2159 1.792006 ACTTTTCCGGCTAGACGTTG 58.208 50.000 18.49 1.99 0.00 4.10
2087 2160 0.442699 CTTTTCCGGCTAGACGTTGC 59.557 55.000 18.49 0.00 0.00 4.17
2088 2161 0.952010 TTTTCCGGCTAGACGTTGCC 60.952 55.000 18.49 15.28 45.25 4.52
2089 2162 1.823169 TTTCCGGCTAGACGTTGCCT 61.823 55.000 18.49 3.91 46.42 4.75
2090 2163 1.823169 TTCCGGCTAGACGTTGCCTT 61.823 55.000 18.49 0.00 46.42 4.35
2091 2164 0.966875 TCCGGCTAGACGTTGCCTTA 60.967 55.000 18.49 9.62 46.42 2.69
2092 2165 0.527817 CCGGCTAGACGTTGCCTTAG 60.528 60.000 18.49 0.00 46.42 2.18
2093 2166 1.146358 CGGCTAGACGTTGCCTTAGC 61.146 60.000 10.69 14.05 46.42 3.09
2094 2167 0.175989 GGCTAGACGTTGCCTTAGCT 59.824 55.000 17.20 0.00 45.26 3.32
2095 2168 1.407979 GGCTAGACGTTGCCTTAGCTA 59.592 52.381 17.20 0.00 45.26 3.32
2096 2169 2.544069 GGCTAGACGTTGCCTTAGCTAG 60.544 54.545 17.20 9.34 45.26 3.42
2097 2170 2.733517 CTAGACGTTGCCTTAGCTAGC 58.266 52.381 6.62 6.62 40.80 3.42
2098 2171 0.175989 AGACGTTGCCTTAGCTAGCC 59.824 55.000 12.13 0.00 40.80 3.93
2099 2172 0.108329 GACGTTGCCTTAGCTAGCCA 60.108 55.000 12.13 0.00 40.80 4.75
2100 2173 0.108138 ACGTTGCCTTAGCTAGCCAG 60.108 55.000 12.13 7.87 40.80 4.85
2110 2183 2.262603 CTAGCCAGCACGCAGTCA 59.737 61.111 0.00 0.00 41.61 3.41
2111 2184 1.808799 CTAGCCAGCACGCAGTCAG 60.809 63.158 0.00 0.00 41.61 3.51
2114 2187 2.029518 CCAGCACGCAGTCAGACA 59.970 61.111 2.66 0.00 41.61 3.41
2140 2214 8.523523 TGAATAATTGAGTTCATGCACAAAAG 57.476 30.769 0.00 0.00 29.93 2.27
2141 2215 8.143193 TGAATAATTGAGTTCATGCACAAAAGT 58.857 29.630 0.00 0.00 29.93 2.66
2142 2216 7.878477 ATAATTGAGTTCATGCACAAAAGTG 57.122 32.000 0.00 0.00 0.00 3.16
2143 2217 4.717233 TTGAGTTCATGCACAAAAGTGT 57.283 36.364 0.00 0.00 39.07 3.55
2144 2218 5.826601 TTGAGTTCATGCACAAAAGTGTA 57.173 34.783 0.00 0.00 35.72 2.90
2185 2259 5.222442 TGGATCTTTTTGGAGAAACCCCATA 60.222 40.000 0.00 0.00 38.00 2.74
2186 2260 5.899547 GGATCTTTTTGGAGAAACCCCATAT 59.100 40.000 0.00 0.00 38.00 1.78
2194 2268 9.474313 TTTTGGAGAAACCCCATATATATATGC 57.526 33.333 22.44 10.96 36.76 3.14
2273 2746 8.015087 CCATGCATACACAGTAATATTTTACGG 58.985 37.037 0.00 5.02 42.14 4.02
2426 2903 8.875168 TGGTGGGTATTTTTCATAAACTTGATT 58.125 29.630 0.00 0.00 0.00 2.57
2427 2904 9.719355 GGTGGGTATTTTTCATAAACTTGATTT 57.281 29.630 0.00 0.00 0.00 2.17
2465 2951 7.972832 TGTACACTACAATTTTACAAGGAGG 57.027 36.000 0.00 0.00 35.38 4.30
2481 2967 9.948964 TTACAAGGAGGTAATAAAAACTAGGTC 57.051 33.333 0.00 0.00 0.00 3.85
2566 4279 1.156095 TGACCTGCCTCCTCAGACA 59.844 57.895 0.00 0.00 36.19 3.41
2586 4299 4.406456 ACATCAACCACCAAAGATAGCAA 58.594 39.130 0.00 0.00 0.00 3.91
2588 4301 6.186957 ACATCAACCACCAAAGATAGCAATA 58.813 36.000 0.00 0.00 0.00 1.90
2593 4306 4.017499 ACCACCAAAGATAGCAATAGGGTT 60.017 41.667 0.00 0.00 0.00 4.11
2594 4307 4.580580 CCACCAAAGATAGCAATAGGGTTC 59.419 45.833 0.00 0.00 0.00 3.62
2616 4329 3.199946 CCAATTACCTCCTGCAGTCCTAA 59.800 47.826 13.81 3.15 0.00 2.69
2643 4356 4.499037 GGAACCCATGAAGTTGTTGTAC 57.501 45.455 5.89 0.00 0.00 2.90
2644 4357 4.142038 GGAACCCATGAAGTTGTTGTACT 58.858 43.478 5.89 0.00 0.00 2.73
2645 4358 4.215613 GGAACCCATGAAGTTGTTGTACTC 59.784 45.833 5.89 0.00 0.00 2.59
2646 4359 3.751518 ACCCATGAAGTTGTTGTACTCC 58.248 45.455 0.00 0.00 0.00 3.85
2647 4360 3.081804 CCCATGAAGTTGTTGTACTCCC 58.918 50.000 0.00 0.00 0.00 4.30
2648 4361 3.244911 CCCATGAAGTTGTTGTACTCCCT 60.245 47.826 0.00 0.00 0.00 4.20
2649 4362 4.003648 CCATGAAGTTGTTGTACTCCCTC 58.996 47.826 0.00 0.00 0.00 4.30
2650 4363 4.263068 CCATGAAGTTGTTGTACTCCCTCT 60.263 45.833 0.00 0.00 0.00 3.69
2651 4364 4.336889 TGAAGTTGTTGTACTCCCTCTG 57.663 45.455 0.00 0.00 0.00 3.35
2652 4365 3.709653 TGAAGTTGTTGTACTCCCTCTGT 59.290 43.478 0.00 0.00 0.00 3.41
2653 4366 4.163458 TGAAGTTGTTGTACTCCCTCTGTT 59.837 41.667 0.00 0.00 0.00 3.16
2654 4367 4.338379 AGTTGTTGTACTCCCTCTGTTC 57.662 45.455 0.00 0.00 0.00 3.18
2655 4368 3.071167 AGTTGTTGTACTCCCTCTGTTCC 59.929 47.826 0.00 0.00 0.00 3.62
2656 4369 2.972348 TGTTGTACTCCCTCTGTTCCT 58.028 47.619 0.00 0.00 0.00 3.36
2657 4370 4.122337 TGTTGTACTCCCTCTGTTCCTA 57.878 45.455 0.00 0.00 0.00 2.94
2658 4371 4.485875 TGTTGTACTCCCTCTGTTCCTAA 58.514 43.478 0.00 0.00 0.00 2.69
2659 4372 4.903049 TGTTGTACTCCCTCTGTTCCTAAA 59.097 41.667 0.00 0.00 0.00 1.85
2660 4373 5.546499 TGTTGTACTCCCTCTGTTCCTAAAT 59.454 40.000 0.00 0.00 0.00 1.40
2661 4374 6.727231 TGTTGTACTCCCTCTGTTCCTAAATA 59.273 38.462 0.00 0.00 0.00 1.40
2662 4375 7.402071 TGTTGTACTCCCTCTGTTCCTAAATAT 59.598 37.037 0.00 0.00 0.00 1.28
2663 4376 8.921205 GTTGTACTCCCTCTGTTCCTAAATATA 58.079 37.037 0.00 0.00 0.00 0.86
2664 4377 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
2665 4378 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
2666 4379 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
2667 4380 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2668 4381 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2669 4382 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2670 4383 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2671 4384 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
2672 4385 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
2687 4400 6.783708 AGTCTTTGTAGAGATTCCAGTAGG 57.216 41.667 0.00 0.00 0.00 3.18
2688 4401 6.257586 AGTCTTTGTAGAGATTCCAGTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
2689 4402 6.153680 AGTCTTTGTAGAGATTCCAGTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
2704 4417 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
2705 4418 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
2706 4419 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
2707 4420 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
2708 4421 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
2709 4422 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
2710 4423 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2711 4424 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2712 4425 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
2713 4426 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
2714 4427 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2715 4428 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2716 4429 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2717 4430 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2718 4431 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2719 4432 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2720 4433 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2721 4434 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
2722 4435 7.156876 ACGGAGCAAAATGAATGAATCTAAA 57.843 32.000 0.00 0.00 0.00 1.85
2723 4436 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
2724 4437 7.094205 ACGGAGCAAAATGAATGAATCTAAACT 60.094 33.333 0.00 0.00 0.00 2.66
2725 4438 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
2748 4461 9.555727 ACTTAAAATGCAACTATATACATCCGT 57.444 29.630 0.00 0.00 0.00 4.69
2752 4465 7.539712 AATGCAACTATATACATCCGTATGC 57.460 36.000 0.00 0.00 38.79 3.14
2753 4466 5.099575 TGCAACTATATACATCCGTATGCG 58.900 41.667 0.00 0.00 38.79 4.73
2771 4484 8.018677 CGTATGCGGTTTATAATGAAATCTCT 57.981 34.615 0.00 0.00 0.00 3.10
2772 4485 9.135843 CGTATGCGGTTTATAATGAAATCTCTA 57.864 33.333 0.00 0.00 0.00 2.43
2774 4487 8.902540 ATGCGGTTTATAATGAAATCTCTACA 57.097 30.769 0.00 0.00 0.00 2.74
2775 4488 8.725405 TGCGGTTTATAATGAAATCTCTACAA 57.275 30.769 0.00 0.00 0.00 2.41
2776 4489 9.168451 TGCGGTTTATAATGAAATCTCTACAAA 57.832 29.630 0.00 0.00 0.00 2.83
2777 4490 9.651718 GCGGTTTATAATGAAATCTCTACAAAG 57.348 33.333 0.00 0.00 0.00 2.77
2793 4506 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
2794 4507 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
2795 4508 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
2796 4509 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
2797 4510 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
2798 4511 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2799 4512 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2800 4513 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2854 4567 5.802465 CCACACATATATGGAAGAGAGCAT 58.198 41.667 16.96 0.00 38.34 3.79
2859 4572 7.892771 ACACATATATGGAAGAGAGCATAGAGA 59.107 37.037 16.96 0.00 0.00 3.10
2875 4588 8.489676 AGCATAGAGAAGATAAGGAGAATCAA 57.510 34.615 0.00 0.00 36.25 2.57
2900 4613 2.463876 GAAGCACAGAAAAGCCAACAC 58.536 47.619 0.00 0.00 0.00 3.32
2923 4636 1.133915 CCCAATACGGCCAACCATACT 60.134 52.381 2.24 0.00 34.57 2.12
2924 4637 1.946768 CCAATACGGCCAACCATACTG 59.053 52.381 2.24 0.00 34.57 2.74
2925 4638 2.420827 CCAATACGGCCAACCATACTGA 60.421 50.000 2.24 0.00 34.57 3.41
2927 4640 0.173935 TACGGCCAACCATACTGACG 59.826 55.000 2.24 0.00 34.57 4.35
2945 4658 1.083806 CGGCACACACTCGTATGCAT 61.084 55.000 3.79 3.79 39.92 3.96
2966 4679 2.189521 GGTATGAGGTGCCCACGG 59.810 66.667 0.00 0.00 0.00 4.94
2995 4708 2.032030 GCGTCCATCCCAACAAATATCG 60.032 50.000 0.00 0.00 0.00 2.92
3009 4722 4.158949 ACAAATATCGTTAAAGGGCCAACC 59.841 41.667 6.18 0.00 40.67 3.77
3024 4737 3.307410 GGCCAACCCCAGAAAAATTTAGG 60.307 47.826 0.00 0.00 0.00 2.69
3038 4751 4.824479 AATTTAGGTTTTGCAGGGATGG 57.176 40.909 0.00 0.00 0.00 3.51
3039 4752 2.990740 TTAGGTTTTGCAGGGATGGT 57.009 45.000 0.00 0.00 0.00 3.55
3040 4753 4.390129 TTTAGGTTTTGCAGGGATGGTA 57.610 40.909 0.00 0.00 0.00 3.25
3041 4754 2.215942 AGGTTTTGCAGGGATGGTAC 57.784 50.000 0.00 0.00 0.00 3.34
3058 4771 4.657013 TGGTACATACAACATTTGGCTGA 58.343 39.130 0.00 0.00 34.12 4.26
3059 4772 4.699735 TGGTACATACAACATTTGGCTGAG 59.300 41.667 0.00 0.00 34.12 3.35
3060 4773 4.941263 GGTACATACAACATTTGGCTGAGA 59.059 41.667 0.00 0.00 34.12 3.27
3061 4774 5.414454 GGTACATACAACATTTGGCTGAGAA 59.586 40.000 0.00 0.00 34.12 2.87
3062 4775 6.095440 GGTACATACAACATTTGGCTGAGAAT 59.905 38.462 0.00 0.00 34.12 2.40
3063 4776 7.282224 GGTACATACAACATTTGGCTGAGAATA 59.718 37.037 0.00 0.00 34.12 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.193536 AGCCCGTTTGCTTGGTGTC 61.194 57.895 0.00 0.00 38.85 3.67
64 65 6.881805 ACATAGATGTAGCAAAGCCCGTTTG 61.882 44.000 0.00 0.00 42.90 2.93
69 70 6.884280 ATTTACATAGATGTAGCAAAGCCC 57.116 37.500 2.79 0.00 43.44 5.19
86 87 9.478238 TGTGTAGGGTTACATAGACTATTTACA 57.522 33.333 0.00 0.00 41.56 2.41
110 111 4.785346 ATCATATCAACCCAGCTCTTGT 57.215 40.909 0.00 0.00 0.00 3.16
111 112 5.012458 TCCTATCATATCAACCCAGCTCTTG 59.988 44.000 0.00 0.00 0.00 3.02
163 167 7.337689 TCTCTCTCTCTCTCTCTCTCAATTTTG 59.662 40.741 0.00 0.00 0.00 2.44
164 168 7.405292 TCTCTCTCTCTCTCTCTCTCAATTTT 58.595 38.462 0.00 0.00 0.00 1.82
167 171 5.901853 TCTCTCTCTCTCTCTCTCTCTCAAT 59.098 44.000 0.00 0.00 0.00 2.57
168 172 5.272402 TCTCTCTCTCTCTCTCTCTCTCAA 58.728 45.833 0.00 0.00 0.00 3.02
247 292 8.823220 AGTTGTTTACTTGGCAATAATCCTAT 57.177 30.769 0.00 0.00 31.29 2.57
297 342 1.750399 CAACCATCCAAGCCCCGAG 60.750 63.158 0.00 0.00 0.00 4.63
298 343 2.196997 CTCAACCATCCAAGCCCCGA 62.197 60.000 0.00 0.00 0.00 5.14
316 361 5.371526 CAACCATGCTATTGAGTCCATACT 58.628 41.667 0.00 0.00 39.21 2.12
318 363 4.165950 ACCAACCATGCTATTGAGTCCATA 59.834 41.667 4.63 0.00 0.00 2.74
319 364 3.053395 ACCAACCATGCTATTGAGTCCAT 60.053 43.478 4.63 0.00 0.00 3.41
327 381 3.009723 CACGAGAACCAACCATGCTATT 58.990 45.455 0.00 0.00 0.00 1.73
338 392 0.179032 ACATGTTGCCACGAGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
441 495 5.024785 TCCCGGCAAAAATTACTTTGTTT 57.975 34.783 0.00 0.00 38.35 2.83
442 496 4.674281 TCCCGGCAAAAATTACTTTGTT 57.326 36.364 0.00 0.00 38.35 2.83
443 497 4.674281 TTCCCGGCAAAAATTACTTTGT 57.326 36.364 0.00 0.00 38.35 2.83
456 510 3.054287 TGGTTTTCATACTATTCCCGGCA 60.054 43.478 0.00 0.00 0.00 5.69
457 511 3.314357 GTGGTTTTCATACTATTCCCGGC 59.686 47.826 0.00 0.00 0.00 6.13
459 513 4.938832 TGTGTGGTTTTCATACTATTCCCG 59.061 41.667 0.00 0.00 38.18 5.14
460 514 8.691661 ATATGTGTGGTTTTCATACTATTCCC 57.308 34.615 0.00 0.00 38.18 3.97
484 538 7.876978 ATGGAATCCAAAATAGGCCAAATAT 57.123 32.000 5.89 0.00 36.95 1.28
544 599 2.231529 CAAAACCGGGTCACATGGTTA 58.768 47.619 6.32 0.00 44.93 2.85
628 686 7.925993 TGAGATTTTCGTTACAGTGTTGAAAT 58.074 30.769 0.00 1.80 0.00 2.17
635 693 3.745975 TGGCTGAGATTTTCGTTACAGTG 59.254 43.478 0.00 0.00 0.00 3.66
675 733 2.439701 TACTCCGGCACTCCCTCG 60.440 66.667 0.00 0.00 0.00 4.63
734 792 1.197721 CTTGCCACTGGTTAGCGAAAG 59.802 52.381 0.00 0.00 0.00 2.62
735 793 1.234821 CTTGCCACTGGTTAGCGAAA 58.765 50.000 0.00 0.00 0.00 3.46
829 889 8.631480 ATTACGAAATTTGTTCCCTCTTTAGT 57.369 30.769 0.00 0.00 0.00 2.24
838 898 5.627780 ACTTTGCGATTACGAAATTTGTTCC 59.372 36.000 0.00 0.00 42.66 3.62
885 945 1.076332 GCTCCATGTACGTGTCAACC 58.924 55.000 13.91 0.00 0.00 3.77
967 1029 1.135527 CGCCTTGATACACCGGAGTTA 59.864 52.381 9.46 0.00 0.00 2.24
1113 1179 1.609208 CATCCCGCTTCCCCATTAAG 58.391 55.000 0.00 0.00 0.00 1.85
1117 1183 4.569180 CGCATCCCGCTTCCCCAT 62.569 66.667 0.00 0.00 39.08 4.00
1246 1312 6.398918 GCAGAGATTAACTAACTGAAGGTGA 58.601 40.000 0.00 0.00 0.00 4.02
1822 1895 0.510359 CAAGTGAGCAAGACAGTCGC 59.490 55.000 0.00 0.00 0.00 5.19
2076 2149 2.733517 CTAGCTAAGGCAACGTCTAGC 58.266 52.381 0.00 0.00 46.39 3.42
2077 2150 2.733517 GCTAGCTAAGGCAACGTCTAG 58.266 52.381 7.70 0.00 46.39 2.43
2078 2151 2.865343 GCTAGCTAAGGCAACGTCTA 57.135 50.000 7.70 0.00 46.39 2.59
2079 2152 3.742983 GCTAGCTAAGGCAACGTCT 57.257 52.632 7.70 0.00 46.39 4.18
2093 2166 1.808799 CTGACTGCGTGCTGGCTAG 60.809 63.158 6.15 0.00 0.00 3.42
2094 2167 2.262603 CTGACTGCGTGCTGGCTA 59.737 61.111 6.15 0.00 0.00 3.93
2095 2168 3.619767 TCTGACTGCGTGCTGGCT 61.620 61.111 6.15 0.00 0.00 4.75
2096 2169 3.418068 GTCTGACTGCGTGCTGGC 61.418 66.667 0.00 0.43 0.00 4.85
2097 2170 1.375140 ATGTCTGACTGCGTGCTGG 60.375 57.895 9.51 0.00 0.00 4.85
2098 2171 0.668401 TCATGTCTGACTGCGTGCTG 60.668 55.000 9.51 0.00 0.00 4.41
2099 2172 0.033920 TTCATGTCTGACTGCGTGCT 59.966 50.000 9.51 0.00 0.00 4.40
2100 2173 1.081892 ATTCATGTCTGACTGCGTGC 58.918 50.000 9.51 0.00 0.00 5.34
2101 2174 5.063817 TCAATTATTCATGTCTGACTGCGTG 59.936 40.000 9.51 3.51 0.00 5.34
2102 2175 5.178061 TCAATTATTCATGTCTGACTGCGT 58.822 37.500 9.51 0.96 0.00 5.24
2103 2176 5.292834 ACTCAATTATTCATGTCTGACTGCG 59.707 40.000 9.51 0.00 0.00 5.18
2104 2177 6.674694 ACTCAATTATTCATGTCTGACTGC 57.325 37.500 9.51 0.00 0.00 4.40
2105 2178 8.260270 TGAACTCAATTATTCATGTCTGACTG 57.740 34.615 9.51 5.29 29.89 3.51
2114 2187 9.146984 CTTTTGTGCATGAACTCAATTATTCAT 57.853 29.630 5.18 6.12 44.52 2.57
2193 2267 8.190784 GGGTCTATGTGCCAATAAAATATATGC 58.809 37.037 0.00 0.00 0.00 3.14
2194 2268 9.466497 AGGGTCTATGTGCCAATAAAATATATG 57.534 33.333 0.00 0.00 0.00 1.78
2232 2608 3.300388 TGCATGGTAGGAAGAGAGTAGG 58.700 50.000 0.00 0.00 0.00 3.18
2442 2928 7.974482 ACCTCCTTGTAAAATTGTAGTGTAC 57.026 36.000 0.00 0.00 0.00 2.90
2456 2942 9.103582 TGACCTAGTTTTTATTACCTCCTTGTA 57.896 33.333 0.00 0.00 0.00 2.41
2523 4236 6.151985 ACACATGGAGAAAATATTACGCCAAA 59.848 34.615 16.94 1.91 37.10 3.28
2532 4245 4.641989 GCAGGTCACACATGGAGAAAATAT 59.358 41.667 0.00 0.00 29.37 1.28
2533 4246 4.009675 GCAGGTCACACATGGAGAAAATA 58.990 43.478 0.00 0.00 29.37 1.40
2566 4279 5.829924 CCTATTGCTATCTTTGGTGGTTGAT 59.170 40.000 0.00 0.00 0.00 2.57
2586 4299 3.138468 GCAGGAGGTAATTGGAACCCTAT 59.862 47.826 0.00 0.00 37.77 2.57
2588 4301 1.285078 GCAGGAGGTAATTGGAACCCT 59.715 52.381 0.00 0.00 37.77 4.34
2593 4306 1.559682 GGACTGCAGGAGGTAATTGGA 59.440 52.381 19.93 0.00 0.00 3.53
2594 4307 1.561542 AGGACTGCAGGAGGTAATTGG 59.438 52.381 19.93 0.00 0.00 3.16
2616 4329 1.747444 ACTTCATGGGTTCCCAGAGT 58.253 50.000 16.04 15.07 39.73 3.24
2632 4345 4.444449 GGAACAGAGGGAGTACAACAACTT 60.444 45.833 0.00 0.00 0.00 2.66
2643 4356 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
2644 4357 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2645 4358 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
2646 4359 9.892130 ACAAAGACTTATATTTAGGAACAGAGG 57.108 33.333 0.00 0.00 0.00 3.69
2661 4374 8.919145 CCTACTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
2662 4375 7.894364 ACCTACTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
2663 4376 6.726764 ACCTACTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
2664 4377 6.153680 CACCTACTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
2665 4378 6.334202 CACCTACTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
2666 4379 5.422331 CCACCTACTGGAATCTCTACAAAGA 59.578 44.000 0.00 0.00 43.95 2.52
2667 4380 5.665459 CCACCTACTGGAATCTCTACAAAG 58.335 45.833 0.00 0.00 43.95 2.77
2668 4381 5.677319 CCACCTACTGGAATCTCTACAAA 57.323 43.478 0.00 0.00 43.95 2.83
2680 4393 2.621998 CCGTATGTAGTCCACCTACTGG 59.378 54.545 0.00 0.00 45.36 4.00
2681 4394 3.548770 TCCGTATGTAGTCCACCTACTG 58.451 50.000 0.00 0.00 45.36 2.74
2682 4395 3.818180 CTCCGTATGTAGTCCACCTACT 58.182 50.000 0.00 0.00 45.36 2.57
2683 4396 2.292845 GCTCCGTATGTAGTCCACCTAC 59.707 54.545 0.00 0.00 45.36 3.18
2684 4397 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
2685 4398 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
2686 4399 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
2687 4400 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
2688 4401 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2689 4402 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2690 4403 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2691 4404 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2692 4405 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2693 4406 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2694 4407 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2695 4408 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2696 4409 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2697 4410 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
2698 4411 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
2699 4412 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
2700 4413 8.992835 AAGTTTAGATTCATTCATTTTGCTCC 57.007 30.769 0.00 0.00 0.00 4.70
2722 4435 9.555727 ACGGATGTATATAGTTGCATTTTAAGT 57.444 29.630 0.00 0.00 0.00 2.24
2726 4439 8.450964 GCATACGGATGTATATAGTTGCATTTT 58.549 33.333 9.90 0.00 39.28 1.82
2727 4440 7.201522 CGCATACGGATGTATATAGTTGCATTT 60.202 37.037 9.90 0.00 39.28 2.32
2728 4441 6.255670 CGCATACGGATGTATATAGTTGCATT 59.744 38.462 9.90 0.00 39.28 3.56
2729 4442 5.748630 CGCATACGGATGTATATAGTTGCAT 59.251 40.000 9.90 0.00 39.28 3.96
2730 4443 5.099575 CGCATACGGATGTATATAGTTGCA 58.900 41.667 9.90 0.00 39.28 4.08
2731 4444 5.621635 CGCATACGGATGTATATAGTTGC 57.378 43.478 9.90 0.00 39.28 4.17
2746 4459 8.018677 AGAGATTTCATTATAAACCGCATACG 57.981 34.615 0.00 0.00 39.67 3.06
2748 4461 9.990360 TGTAGAGATTTCATTATAAACCGCATA 57.010 29.630 0.00 0.00 0.00 3.14
2749 4462 8.902540 TGTAGAGATTTCATTATAAACCGCAT 57.097 30.769 0.00 0.00 0.00 4.73
2750 4463 8.725405 TTGTAGAGATTTCATTATAAACCGCA 57.275 30.769 0.00 0.00 0.00 5.69
2751 4464 9.651718 CTTTGTAGAGATTTCATTATAAACCGC 57.348 33.333 0.00 0.00 0.00 5.68
2767 4480 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
2768 4481 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
2769 4482 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
2770 4483 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
2771 4484 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
2772 4485 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
2773 4486 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
2774 4487 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2775 4488 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2776 4489 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2777 4490 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2778 4491 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2779 4492 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2780 4493 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2781 4494 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2782 4495 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2783 4496 4.344102 TGATACTCCCTCCGTTCCTAAATG 59.656 45.833 0.00 0.00 0.00 2.32
2784 4497 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
2785 4498 3.958798 CTGATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
2786 4499 3.053095 ACTGATACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
2787 4500 2.512896 ACTGATACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
2788 4501 1.288335 ACTGATACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
2789 4502 1.409427 CACTGATACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
2790 4503 2.376109 TCACTGATACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
2791 4504 2.526888 TCACTGATACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
2792 4505 2.311463 CATCACTGATACTCCCTCCGT 58.689 52.381 0.00 0.00 0.00 4.69
2793 4506 1.615883 CCATCACTGATACTCCCTCCG 59.384 57.143 0.00 0.00 0.00 4.63
2794 4507 1.346068 GCCATCACTGATACTCCCTCC 59.654 57.143 0.00 0.00 0.00 4.30
2795 4508 2.042464 TGCCATCACTGATACTCCCTC 58.958 52.381 0.00 0.00 0.00 4.30
2796 4509 2.171448 GTTGCCATCACTGATACTCCCT 59.829 50.000 0.00 0.00 0.00 4.20
2797 4510 2.092968 TGTTGCCATCACTGATACTCCC 60.093 50.000 0.00 0.00 0.00 4.30
2798 4511 3.118629 TCTGTTGCCATCACTGATACTCC 60.119 47.826 0.00 0.00 0.00 3.85
2799 4512 4.128925 TCTGTTGCCATCACTGATACTC 57.871 45.455 0.00 0.00 0.00 2.59
2800 4513 4.449131 CATCTGTTGCCATCACTGATACT 58.551 43.478 0.00 0.00 0.00 2.12
2829 4542 4.573900 CTCTCTTCCATATATGTGTGGCC 58.426 47.826 11.73 0.00 36.62 5.36
2833 4546 7.892771 TCTCTATGCTCTCTTCCATATATGTGT 59.107 37.037 11.73 0.00 0.00 3.72
2854 4567 7.288852 CCCACTTGATTCTCCTTATCTTCTCTA 59.711 40.741 0.00 0.00 0.00 2.43
2859 4572 6.642733 TTCCCACTTGATTCTCCTTATCTT 57.357 37.500 0.00 0.00 0.00 2.40
2875 4588 1.322442 GCTTTTCTGTGCTTCCCACT 58.678 50.000 0.00 0.00 44.92 4.00
2923 4636 0.388006 CATACGAGTGTGTGCCGTCA 60.388 55.000 0.00 0.00 37.69 4.35
2924 4637 2.359792 CATACGAGTGTGTGCCGTC 58.640 57.895 0.00 0.00 37.69 4.79
2925 4638 4.571250 CATACGAGTGTGTGCCGT 57.429 55.556 0.00 0.00 39.94 5.68
2972 4685 0.970427 ATTTGTTGGGATGGACGCCC 60.970 55.000 0.00 0.00 46.22 6.13
2974 4687 2.032030 CGATATTTGTTGGGATGGACGC 60.032 50.000 0.00 0.00 0.00 5.19
2981 4694 4.399934 GCCCTTTAACGATATTTGTTGGGA 59.600 41.667 14.73 0.00 33.86 4.37
2985 4698 5.336929 GGTTGGCCCTTTAACGATATTTGTT 60.337 40.000 0.00 0.75 0.00 2.83
3009 4722 5.469760 CCTGCAAAACCTAAATTTTTCTGGG 59.530 40.000 0.00 0.00 33.35 4.45
3014 4727 6.003326 CCATCCCTGCAAAACCTAAATTTTT 58.997 36.000 0.00 0.00 29.17 1.94
3024 4737 4.013728 TGTATGTACCATCCCTGCAAAAC 58.986 43.478 0.00 0.00 0.00 2.43
3038 4751 6.494893 TTCTCAGCCAAATGTTGTATGTAC 57.505 37.500 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.