Multiple sequence alignment - TraesCS3B01G585700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G585700 chr3B 100.000 5576 0 0 1 5576 812578369 812572794 0.000000e+00 10298.0
1 TraesCS3B01G585700 chr3B 88.102 1101 91 18 1166 2262 357693501 357692437 0.000000e+00 1271.0
2 TraesCS3B01G585700 chr3B 91.597 119 8 2 4937 5054 189507478 189507361 4.470000e-36 163.0
3 TraesCS3B01G585700 chr3D 92.703 2508 144 18 2454 4936 604866613 604864120 0.000000e+00 3581.0
4 TraesCS3B01G585700 chr3D 92.990 1726 88 12 738 2451 604868411 604866707 0.000000e+00 2486.0
5 TraesCS3B01G585700 chr3D 92.604 338 22 2 5204 5541 604863141 604862807 3.020000e-132 483.0
6 TraesCS3B01G585700 chr3D 88.581 289 22 4 1 289 604869938 604869661 1.920000e-89 340.0
7 TraesCS3B01G585700 chr3D 96.133 181 4 3 680 858 604868592 604868413 5.460000e-75 292.0
8 TraesCS3B01G585700 chr3A 94.627 2252 78 15 649 2885 735888298 735890521 0.000000e+00 3448.0
9 TraesCS3B01G585700 chr3A 94.346 2087 80 16 2878 4948 735890669 735892733 0.000000e+00 3166.0
10 TraesCS3B01G585700 chr3A 93.566 373 21 2 5204 5576 735893119 735893488 2.270000e-153 553.0
11 TraesCS3B01G585700 chr6A 88.193 1101 90 18 1166 2262 359069144 359070208 0.000000e+00 1277.0
12 TraesCS3B01G585700 chr2D 87.255 1020 111 13 1177 2192 609552234 609553238 0.000000e+00 1146.0
13 TraesCS3B01G585700 chr6B 84.653 1023 125 17 1204 2214 566796356 566795354 0.000000e+00 990.0
14 TraesCS3B01G585700 chr6B 93.750 112 7 0 4947 5058 126722440 126722329 9.610000e-38 169.0
15 TraesCS3B01G585700 chr2A 87.848 683 53 13 1166 1846 588986344 588986998 0.000000e+00 774.0
16 TraesCS3B01G585700 chr7D 88.871 629 59 6 1196 1824 541414294 541413677 0.000000e+00 763.0
17 TraesCS3B01G585700 chr7A 88.496 565 59 5 1196 1760 657008824 657008266 0.000000e+00 678.0
18 TraesCS3B01G585700 chr4A 87.668 446 42 6 1821 2262 104120780 104120344 1.790000e-139 507.0
19 TraesCS3B01G585700 chr4A 95.327 107 5 0 4947 5053 61025561 61025455 2.670000e-38 171.0
20 TraesCS3B01G585700 chr1A 87.668 446 42 6 1821 2262 514685818 514686254 1.790000e-139 507.0
21 TraesCS3B01G585700 chr1B 87.500 448 41 8 1821 2262 611688739 611689177 2.320000e-138 503.0
22 TraesCS3B01G585700 chr2B 87.444 446 42 7 1821 2262 35378406 35378841 8.340000e-138 501.0
23 TraesCS3B01G585700 chr2B 96.262 107 4 0 4947 5053 460439559 460439665 5.740000e-40 176.0
24 TraesCS3B01G585700 chrUn 87.917 240 18 8 314 547 55794962 55795196 7.120000e-69 272.0
25 TraesCS3B01G585700 chrUn 100.000 30 0 0 285 314 55794921 55794950 7.800000e-04 56.5
26 TraesCS3B01G585700 chr7B 84.099 283 21 10 285 553 522120636 522120908 9.270000e-63 252.0
27 TraesCS3B01G585700 chr7B 85.915 213 23 6 339 548 27590895 27590687 2.610000e-53 220.0
28 TraesCS3B01G585700 chr7B 94.595 111 5 1 4947 5057 316313684 316313793 2.670000e-38 171.0
29 TraesCS3B01G585700 chr7B 95.327 107 5 0 4947 5053 672952642 672952748 2.670000e-38 171.0
30 TraesCS3B01G585700 chr7B 95.327 107 5 0 4947 5053 672957709 672957815 2.670000e-38 171.0
31 TraesCS3B01G585700 chr7B 95.327 107 5 0 4947 5053 736300446 736300552 2.670000e-38 171.0
32 TraesCS3B01G585700 chr5A 90.217 184 14 2 2013 2192 473046989 473046806 2.600000e-58 237.0
33 TraesCS3B01G585700 chr5B 85.792 183 19 3 370 552 229143043 229143218 2.650000e-43 187.0
34 TraesCS3B01G585700 chr4D 94.783 115 6 0 4944 5058 39410785 39410671 4.440000e-41 180.0
35 TraesCS3B01G585700 chr1D 92.188 64 4 1 691 753 168357156 168357093 7.690000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G585700 chr3B 812572794 812578369 5575 True 10298.0 10298 100.000000 1 5576 1 chr3B.!!$R3 5575
1 TraesCS3B01G585700 chr3B 357692437 357693501 1064 True 1271.0 1271 88.102000 1166 2262 1 chr3B.!!$R2 1096
2 TraesCS3B01G585700 chr3D 604862807 604869938 7131 True 1436.4 3581 92.602200 1 5541 5 chr3D.!!$R1 5540
3 TraesCS3B01G585700 chr3A 735888298 735893488 5190 False 2389.0 3448 94.179667 649 5576 3 chr3A.!!$F1 4927
4 TraesCS3B01G585700 chr6A 359069144 359070208 1064 False 1277.0 1277 88.193000 1166 2262 1 chr6A.!!$F1 1096
5 TraesCS3B01G585700 chr2D 609552234 609553238 1004 False 1146.0 1146 87.255000 1177 2192 1 chr2D.!!$F1 1015
6 TraesCS3B01G585700 chr6B 566795354 566796356 1002 True 990.0 990 84.653000 1204 2214 1 chr6B.!!$R2 1010
7 TraesCS3B01G585700 chr2A 588986344 588986998 654 False 774.0 774 87.848000 1166 1846 1 chr2A.!!$F1 680
8 TraesCS3B01G585700 chr7D 541413677 541414294 617 True 763.0 763 88.871000 1196 1824 1 chr7D.!!$R1 628
9 TraesCS3B01G585700 chr7A 657008266 657008824 558 True 678.0 678 88.496000 1196 1760 1 chr7A.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1936 0.105408 TCTCCGCCTTATAAACCGCC 59.895 55.000 0.29 0.0 0.00 6.13 F
1095 2055 3.565214 TCCAAACCCTCGCTGCCA 61.565 61.111 0.00 0.0 0.00 4.92 F
1778 2761 1.302832 CCACAGAGGTGTTGGAGGC 60.303 63.158 0.00 0.0 43.71 4.70 F
2871 3965 0.989164 GCGCTTGGTTTTATTTCCGC 59.011 50.000 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 2762 0.108138 CCTTCTCGCTCCGAAACCAT 60.108 55.000 0.00 0.0 34.74 3.55 R
2790 3884 2.571206 CGTTTTTCGTTAGCTGGCTTC 58.429 47.619 0.00 0.0 34.52 3.86 R
3680 4945 0.618458 ACCCACTTGGCGATGTGTAT 59.382 50.000 12.61 0.0 37.83 2.29 R
4667 5944 0.249120 CAGGGATGTCGCTAACACCA 59.751 55.000 0.00 0.0 41.75 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.698766 AGCTTCACTCAATGTCATTGTTTTTC 59.301 34.615 22.01 9.16 41.02 2.29
78 79 7.555554 TCAATGTCATTGTTTTTCCATGGTTTT 59.444 29.630 22.01 0.00 41.02 2.43
88 89 5.708877 TTTCCATGGTTTTTACTTACCCG 57.291 39.130 12.58 0.00 33.34 5.28
115 116 1.951602 GGTTTGTACAACTGACCCACC 59.048 52.381 14.58 11.08 0.00 4.61
138 139 6.127451 ACCTGAATGTCAACTATGTACGATGA 60.127 38.462 0.00 0.00 0.00 2.92
159 160 9.478019 CGATGAGTACAACATTAAAATGAAGTC 57.522 33.333 9.60 5.32 39.67 3.01
181 182 5.293569 GTCCTTTGGGTCAATTCGTGTATAG 59.706 44.000 0.00 0.00 0.00 1.31
199 200 9.448294 CGTGTATAGACAAGGTAGTTAATTCTC 57.552 37.037 0.49 0.00 37.31 2.87
201 202 8.133627 TGTATAGACAAGGTAGTTAATTCTCGC 58.866 37.037 0.00 0.00 30.68 5.03
203 204 3.869832 GACAAGGTAGTTAATTCTCGCCC 59.130 47.826 0.00 0.00 0.00 6.13
204 205 3.262405 ACAAGGTAGTTAATTCTCGCCCA 59.738 43.478 0.00 0.00 0.00 5.36
206 207 3.870274 AGGTAGTTAATTCTCGCCCAAC 58.130 45.455 0.00 0.00 0.00 3.77
207 208 3.518303 AGGTAGTTAATTCTCGCCCAACT 59.482 43.478 0.00 0.00 34.10 3.16
208 209 4.019591 AGGTAGTTAATTCTCGCCCAACTT 60.020 41.667 0.00 0.00 32.09 2.66
210 211 4.015872 AGTTAATTCTCGCCCAACTTGA 57.984 40.909 0.00 0.00 0.00 3.02
211 212 4.589908 AGTTAATTCTCGCCCAACTTGAT 58.410 39.130 0.00 0.00 0.00 2.57
212 213 4.636206 AGTTAATTCTCGCCCAACTTGATC 59.364 41.667 0.00 0.00 0.00 2.92
213 214 2.787473 ATTCTCGCCCAACTTGATCA 57.213 45.000 0.00 0.00 0.00 2.92
214 215 2.787473 TTCTCGCCCAACTTGATCAT 57.213 45.000 0.00 0.00 0.00 2.45
215 216 3.904800 TTCTCGCCCAACTTGATCATA 57.095 42.857 0.00 0.00 0.00 2.15
216 217 3.904800 TCTCGCCCAACTTGATCATAA 57.095 42.857 0.00 0.00 0.00 1.90
217 218 3.797039 TCTCGCCCAACTTGATCATAAG 58.203 45.455 0.00 0.00 0.00 1.73
218 219 3.450817 TCTCGCCCAACTTGATCATAAGA 59.549 43.478 0.00 0.00 0.00 2.10
219 220 3.797039 TCGCCCAACTTGATCATAAGAG 58.203 45.455 0.00 0.00 0.00 2.85
220 221 2.874701 CGCCCAACTTGATCATAAGAGG 59.125 50.000 0.00 0.36 0.00 3.69
221 222 3.682718 CGCCCAACTTGATCATAAGAGGT 60.683 47.826 0.00 0.00 0.00 3.85
233 234 0.320374 TAAGAGGTTCACCAGCACCG 59.680 55.000 0.00 0.00 36.06 4.94
241 242 2.435938 ACCAGCACCGGCAATACG 60.436 61.111 0.00 0.00 44.61 3.06
261 262 1.066605 GGTGCACATACCGATCGTACT 59.933 52.381 20.43 0.00 0.00 2.73
266 267 4.517832 TGCACATACCGATCGTACTATCTT 59.482 41.667 15.09 0.00 0.00 2.40
267 268 4.852104 GCACATACCGATCGTACTATCTTG 59.148 45.833 15.09 6.46 0.00 3.02
286 287 0.881118 GGGCAAGAACTCGCAATTCA 59.119 50.000 0.00 0.00 0.00 2.57
289 290 2.589014 GCAAGAACTCGCAATTCAAGG 58.411 47.619 0.00 0.00 0.00 3.61
290 291 2.226437 GCAAGAACTCGCAATTCAAGGA 59.774 45.455 0.00 0.00 0.00 3.36
291 292 3.669023 GCAAGAACTCGCAATTCAAGGAG 60.669 47.826 0.00 0.00 0.00 3.69
293 294 2.303022 AGAACTCGCAATTCAAGGAGGA 59.697 45.455 0.00 0.00 0.00 3.71
294 295 2.393271 ACTCGCAATTCAAGGAGGAG 57.607 50.000 0.00 0.00 0.00 3.69
295 296 1.902508 ACTCGCAATTCAAGGAGGAGA 59.097 47.619 0.00 0.00 0.00 3.71
297 298 2.935201 CTCGCAATTCAAGGAGGAGAAG 59.065 50.000 0.00 0.00 0.00 2.85
298 299 2.567169 TCGCAATTCAAGGAGGAGAAGA 59.433 45.455 0.00 0.00 0.00 2.87
299 300 3.007940 TCGCAATTCAAGGAGGAGAAGAA 59.992 43.478 0.00 0.00 0.00 2.52
300 301 3.373439 CGCAATTCAAGGAGGAGAAGAAG 59.627 47.826 0.00 0.00 0.00 2.85
302 303 4.566488 GCAATTCAAGGAGGAGAAGAAGGA 60.566 45.833 0.00 0.00 0.00 3.36
303 304 4.835284 ATTCAAGGAGGAGAAGAAGGAC 57.165 45.455 0.00 0.00 0.00 3.85
305 306 2.171840 CAAGGAGGAGAAGAAGGACGA 58.828 52.381 0.00 0.00 0.00 4.20
306 307 2.137810 AGGAGGAGAAGAAGGACGAG 57.862 55.000 0.00 0.00 0.00 4.18
307 308 1.107945 GGAGGAGAAGAAGGACGAGG 58.892 60.000 0.00 0.00 0.00 4.63
308 309 1.341187 GGAGGAGAAGAAGGACGAGGA 60.341 57.143 0.00 0.00 0.00 3.71
309 310 1.746787 GAGGAGAAGAAGGACGAGGAC 59.253 57.143 0.00 0.00 0.00 3.85
311 312 1.451067 GAGAAGAAGGACGAGGACGA 58.549 55.000 0.00 0.00 42.66 4.20
312 313 1.130938 GAGAAGAAGGACGAGGACGAC 59.869 57.143 0.00 0.00 42.66 4.34
313 314 0.179194 GAAGAAGGACGAGGACGACG 60.179 60.000 0.00 0.00 42.66 5.12
318 319 4.808238 GACGAGGACGACGGCGAC 62.808 72.222 22.49 12.72 42.66 5.19
332 333 2.399611 CGACCTCGCCGCATTTTC 59.600 61.111 0.00 0.00 0.00 2.29
333 334 2.791927 GACCTCGCCGCATTTTCC 59.208 61.111 0.00 0.00 0.00 3.13
340 341 3.061848 CCGCATTTTCCGGCCTGT 61.062 61.111 0.00 0.00 39.22 4.00
341 342 1.747367 CCGCATTTTCCGGCCTGTA 60.747 57.895 0.00 0.00 39.22 2.74
342 343 1.714899 CCGCATTTTCCGGCCTGTAG 61.715 60.000 0.00 0.00 39.22 2.74
344 345 0.733150 GCATTTTCCGGCCTGTAGTC 59.267 55.000 0.00 0.00 0.00 2.59
346 347 0.743345 ATTTTCCGGCCTGTAGTCGC 60.743 55.000 0.00 0.00 0.00 5.19
354 355 2.201022 CCTGTAGTCGCGGCCCTAT 61.201 63.158 7.31 0.00 0.00 2.57
355 356 1.740285 CTGTAGTCGCGGCCCTATT 59.260 57.895 7.31 0.00 0.00 1.73
358 359 0.935196 GTAGTCGCGGCCCTATTTTG 59.065 55.000 7.31 0.00 0.00 2.44
359 360 0.538118 TAGTCGCGGCCCTATTTTGT 59.462 50.000 7.31 0.00 0.00 2.83
362 363 1.068125 GTCGCGGCCCTATTTTGTTTT 60.068 47.619 6.13 0.00 0.00 2.43
363 364 1.614413 TCGCGGCCCTATTTTGTTTTT 59.386 42.857 6.13 0.00 0.00 1.94
403 651 9.997482 TTATGTAAGAAACTATTTCAATTCGCC 57.003 29.630 4.25 0.00 42.10 5.54
404 652 6.539324 TGTAAGAAACTATTTCAATTCGCCG 58.461 36.000 4.25 0.00 42.10 6.46
405 653 4.616181 AGAAACTATTTCAATTCGCCGG 57.384 40.909 0.00 0.00 42.10 6.13
407 655 4.698304 AGAAACTATTTCAATTCGCCGGAA 59.302 37.500 5.05 0.00 42.10 4.30
408 656 5.357032 AGAAACTATTTCAATTCGCCGGAAT 59.643 36.000 5.05 0.00 42.10 3.01
409 657 6.540914 AGAAACTATTTCAATTCGCCGGAATA 59.459 34.615 5.05 0.00 40.28 1.75
412 660 7.972832 ACTATTTCAATTCGCCGGAATAATA 57.027 32.000 5.05 0.00 41.99 0.98
414 662 9.661563 ACTATTTCAATTCGCCGGAATAATATA 57.338 29.630 5.05 0.00 41.99 0.86
418 666 9.619316 TTTCAATTCGCCGGAATAATATAAATG 57.381 29.630 5.05 0.00 41.99 2.32
420 668 8.788806 TCAATTCGCCGGAATAATATAAATGTT 58.211 29.630 5.05 0.00 41.99 2.71
421 669 9.405587 CAATTCGCCGGAATAATATAAATGTTT 57.594 29.630 5.05 0.00 41.99 2.83
425 673 6.088883 CGCCGGAATAATATAAATGTTTTGCC 59.911 38.462 5.05 0.00 0.00 4.52
426 674 6.088883 GCCGGAATAATATAAATGTTTTGCCG 59.911 38.462 5.05 0.00 0.00 5.69
428 676 7.863375 CCGGAATAATATAAATGTTTTGCCGAA 59.137 33.333 0.00 0.00 34.88 4.30
429 677 9.405587 CGGAATAATATAAATGTTTTGCCGAAT 57.594 29.630 4.09 0.00 34.88 3.34
437 685 6.720012 AAATGTTTTGCCGAATATTTGTCC 57.280 33.333 1.99 0.00 31.73 4.02
438 686 4.855715 TGTTTTGCCGAATATTTGTCCA 57.144 36.364 1.99 0.00 0.00 4.02
439 687 4.804108 TGTTTTGCCGAATATTTGTCCAG 58.196 39.130 1.99 0.00 0.00 3.86
440 688 3.502191 TTTGCCGAATATTTGTCCAGC 57.498 42.857 1.99 0.00 0.00 4.85
441 689 2.418368 TGCCGAATATTTGTCCAGCT 57.582 45.000 1.99 0.00 0.00 4.24
442 690 2.288666 TGCCGAATATTTGTCCAGCTC 58.711 47.619 1.99 0.00 0.00 4.09
443 691 1.261619 GCCGAATATTTGTCCAGCTCG 59.738 52.381 1.99 0.00 0.00 5.03
444 692 1.261619 CCGAATATTTGTCCAGCTCGC 59.738 52.381 1.99 0.00 0.00 5.03
445 693 2.205074 CGAATATTTGTCCAGCTCGCT 58.795 47.619 0.00 0.00 0.00 4.93
446 694 2.033407 CGAATATTTGTCCAGCTCGCTG 60.033 50.000 11.83 11.83 43.26 5.18
447 695 2.988010 ATATTTGTCCAGCTCGCTGA 57.012 45.000 19.78 3.99 46.30 4.26
448 696 2.760634 TATTTGTCCAGCTCGCTGAA 57.239 45.000 19.78 6.83 46.30 3.02
449 697 2.119801 ATTTGTCCAGCTCGCTGAAT 57.880 45.000 19.78 8.77 46.30 2.57
450 698 1.896220 TTTGTCCAGCTCGCTGAATT 58.104 45.000 19.78 0.00 46.30 2.17
451 699 1.896220 TTGTCCAGCTCGCTGAATTT 58.104 45.000 19.78 0.00 46.30 1.82
452 700 1.896220 TGTCCAGCTCGCTGAATTTT 58.104 45.000 19.78 0.00 46.30 1.82
453 701 3.052455 TGTCCAGCTCGCTGAATTTTA 57.948 42.857 19.78 0.00 46.30 1.52
454 702 3.002791 TGTCCAGCTCGCTGAATTTTAG 58.997 45.455 19.78 1.99 46.30 1.85
455 703 3.262420 GTCCAGCTCGCTGAATTTTAGA 58.738 45.455 19.78 4.32 46.30 2.10
456 704 3.873952 GTCCAGCTCGCTGAATTTTAGAT 59.126 43.478 19.78 0.00 46.30 1.98
457 705 4.333926 GTCCAGCTCGCTGAATTTTAGATT 59.666 41.667 19.78 0.00 46.30 2.40
458 706 4.572389 TCCAGCTCGCTGAATTTTAGATTC 59.428 41.667 19.78 0.00 46.30 2.52
459 707 4.333649 CCAGCTCGCTGAATTTTAGATTCA 59.666 41.667 19.78 0.00 46.30 2.57
460 708 5.163723 CCAGCTCGCTGAATTTTAGATTCAA 60.164 40.000 19.78 0.00 46.30 2.69
461 709 6.317088 CAGCTCGCTGAATTTTAGATTCAAA 58.683 36.000 13.43 0.00 46.30 2.69
462 710 6.803320 CAGCTCGCTGAATTTTAGATTCAAAA 59.197 34.615 13.43 0.00 46.30 2.44
463 711 6.803807 AGCTCGCTGAATTTTAGATTCAAAAC 59.196 34.615 0.03 0.00 37.55 2.43
464 712 6.582295 GCTCGCTGAATTTTAGATTCAAAACA 59.418 34.615 0.03 0.00 37.55 2.83
465 713 7.114811 GCTCGCTGAATTTTAGATTCAAAACAA 59.885 33.333 0.03 0.00 37.55 2.83
466 714 9.132521 CTCGCTGAATTTTAGATTCAAAACAAT 57.867 29.630 0.03 0.00 37.55 2.71
467 715 9.474920 TCGCTGAATTTTAGATTCAAAACAATT 57.525 25.926 0.03 0.00 37.55 2.32
479 727 8.495148 AGATTCAAAACAATTTAAAACATCCGC 58.505 29.630 0.00 0.00 0.00 5.54
480 728 6.532365 TCAAAACAATTTAAAACATCCGCC 57.468 33.333 0.00 0.00 0.00 6.13
481 729 6.284459 TCAAAACAATTTAAAACATCCGCCT 58.716 32.000 0.00 0.00 0.00 5.52
482 730 6.201806 TCAAAACAATTTAAAACATCCGCCTG 59.798 34.615 0.00 0.00 0.00 4.85
483 731 4.186856 ACAATTTAAAACATCCGCCTGG 57.813 40.909 0.00 0.00 0.00 4.45
484 732 3.056179 ACAATTTAAAACATCCGCCTGGG 60.056 43.478 0.00 0.00 35.24 4.45
485 733 1.551452 TTTAAAACATCCGCCTGGGG 58.449 50.000 3.33 3.33 36.01 4.96
486 734 0.968393 TTAAAACATCCGCCTGGGGC 60.968 55.000 5.02 0.00 46.75 5.80
505 753 3.647771 GACCCTGGGCCTTCGGTT 61.648 66.667 14.08 0.00 0.00 4.44
506 754 3.920093 GACCCTGGGCCTTCGGTTG 62.920 68.421 14.08 0.00 0.00 3.77
507 755 4.740822 CCCTGGGCCTTCGGTTGG 62.741 72.222 4.53 0.00 0.00 3.77
508 756 4.740822 CCTGGGCCTTCGGTTGGG 62.741 72.222 4.53 0.00 0.00 4.12
509 757 3.646715 CTGGGCCTTCGGTTGGGA 61.647 66.667 4.53 0.00 0.00 4.37
510 758 3.179339 TGGGCCTTCGGTTGGGAA 61.179 61.111 4.53 0.00 0.00 3.97
511 759 2.675423 GGGCCTTCGGTTGGGAAC 60.675 66.667 0.84 0.00 0.00 3.62
524 772 3.965660 GGAACCAGATCGCCCCTA 58.034 61.111 0.00 0.00 0.00 3.53
525 773 1.749033 GGAACCAGATCGCCCCTAG 59.251 63.158 0.00 0.00 0.00 3.02
526 774 1.749033 GAACCAGATCGCCCCTAGG 59.251 63.158 0.06 0.06 0.00 3.02
538 786 0.179054 CCCCTAGGCCGACTTTTAGC 60.179 60.000 2.05 0.00 0.00 3.09
539 787 0.529992 CCCTAGGCCGACTTTTAGCG 60.530 60.000 2.05 0.00 0.00 4.26
540 788 1.152383 CCTAGGCCGACTTTTAGCGC 61.152 60.000 0.00 0.00 0.00 5.92
541 789 1.152383 CTAGGCCGACTTTTAGCGCC 61.152 60.000 2.29 0.00 0.00 6.53
542 790 2.894240 TAGGCCGACTTTTAGCGCCG 62.894 60.000 2.29 0.00 0.00 6.46
543 791 3.861263 GCCGACTTTTAGCGCCGG 61.861 66.667 13.63 13.63 42.74 6.13
544 792 2.433664 CCGACTTTTAGCGCCGGT 60.434 61.111 2.29 0.00 35.83 5.28
545 793 2.030958 CCGACTTTTAGCGCCGGTT 61.031 57.895 2.29 0.00 35.83 4.44
546 794 1.418755 CGACTTTTAGCGCCGGTTC 59.581 57.895 2.29 0.00 0.00 3.62
547 795 1.418755 GACTTTTAGCGCCGGTTCG 59.581 57.895 2.29 0.00 0.00 3.95
548 796 1.287041 GACTTTTAGCGCCGGTTCGT 61.287 55.000 2.29 0.00 0.00 3.85
549 797 1.287041 ACTTTTAGCGCCGGTTCGTC 61.287 55.000 2.29 0.00 0.00 4.20
550 798 1.963190 CTTTTAGCGCCGGTTCGTCC 61.963 60.000 2.29 0.00 0.00 4.79
551 799 3.938019 TTTAGCGCCGGTTCGTCCC 62.938 63.158 2.29 0.00 0.00 4.46
559 807 2.202892 GGTTCGTCCCCGAGATGC 60.203 66.667 0.00 0.00 45.24 3.91
560 808 2.722201 GGTTCGTCCCCGAGATGCT 61.722 63.158 0.00 0.00 45.24 3.79
561 809 1.227002 GTTCGTCCCCGAGATGCTC 60.227 63.158 0.00 0.00 45.24 4.26
562 810 1.379977 TTCGTCCCCGAGATGCTCT 60.380 57.895 0.00 0.00 45.24 4.09
563 811 0.970937 TTCGTCCCCGAGATGCTCTT 60.971 55.000 0.00 0.00 45.24 2.85
564 812 0.106868 TCGTCCCCGAGATGCTCTTA 60.107 55.000 0.00 0.00 38.40 2.10
565 813 0.962489 CGTCCCCGAGATGCTCTTAT 59.038 55.000 0.00 0.00 35.63 1.73
566 814 1.068194 CGTCCCCGAGATGCTCTTATC 60.068 57.143 0.00 0.00 35.63 1.75
567 815 2.243810 GTCCCCGAGATGCTCTTATCT 58.756 52.381 0.00 0.00 40.02 1.98
568 816 2.630580 GTCCCCGAGATGCTCTTATCTT 59.369 50.000 0.00 0.00 37.53 2.40
569 817 3.827302 GTCCCCGAGATGCTCTTATCTTA 59.173 47.826 0.00 0.00 37.53 2.10
570 818 4.281182 GTCCCCGAGATGCTCTTATCTTAA 59.719 45.833 0.00 0.00 37.53 1.85
571 819 4.899457 TCCCCGAGATGCTCTTATCTTAAA 59.101 41.667 0.00 0.00 37.53 1.52
572 820 5.011125 TCCCCGAGATGCTCTTATCTTAAAG 59.989 44.000 0.00 0.00 37.53 1.85
573 821 5.221541 CCCCGAGATGCTCTTATCTTAAAGT 60.222 44.000 0.00 0.00 37.53 2.66
574 822 6.015350 CCCCGAGATGCTCTTATCTTAAAGTA 60.015 42.308 0.00 0.00 37.53 2.24
575 823 7.434492 CCCGAGATGCTCTTATCTTAAAGTAA 58.566 38.462 0.00 0.00 37.53 2.24
576 824 7.926555 CCCGAGATGCTCTTATCTTAAAGTAAA 59.073 37.037 0.00 0.00 37.53 2.01
577 825 9.314321 CCGAGATGCTCTTATCTTAAAGTAAAA 57.686 33.333 0.00 0.00 37.53 1.52
583 831 8.512138 TGCTCTTATCTTAAAGTAAAACAAGCC 58.488 33.333 0.00 0.00 0.00 4.35
584 832 8.512138 GCTCTTATCTTAAAGTAAAACAAGCCA 58.488 33.333 0.00 0.00 0.00 4.75
597 845 9.260002 AGTAAAACAAGCCAACATTTGAATTAG 57.740 29.630 0.00 0.00 0.00 1.73
600 848 5.232463 ACAAGCCAACATTTGAATTAGCAG 58.768 37.500 0.00 0.00 0.00 4.24
604 852 5.185635 AGCCAACATTTGAATTAGCAGCTTA 59.814 36.000 0.00 0.00 0.00 3.09
605 853 5.868801 GCCAACATTTGAATTAGCAGCTTAA 59.131 36.000 0.00 0.00 0.00 1.85
606 854 6.368516 GCCAACATTTGAATTAGCAGCTTAAA 59.631 34.615 0.00 0.00 0.00 1.52
607 855 7.412237 GCCAACATTTGAATTAGCAGCTTAAAG 60.412 37.037 0.00 0.00 0.00 1.85
608 856 7.599998 CCAACATTTGAATTAGCAGCTTAAAGT 59.400 33.333 0.00 0.00 0.00 2.66
609 857 9.624697 CAACATTTGAATTAGCAGCTTAAAGTA 57.375 29.630 0.00 0.00 0.00 2.24
618 866 9.678941 AATTAGCAGCTTAAAGTAAAACAAGTC 57.321 29.630 0.00 0.00 0.00 3.01
619 867 6.693315 AGCAGCTTAAAGTAAAACAAGTCA 57.307 33.333 0.00 0.00 0.00 3.41
620 868 7.095695 AGCAGCTTAAAGTAAAACAAGTCAA 57.904 32.000 0.00 0.00 0.00 3.18
621 869 6.972901 AGCAGCTTAAAGTAAAACAAGTCAAC 59.027 34.615 0.00 0.00 0.00 3.18
622 870 6.750039 GCAGCTTAAAGTAAAACAAGTCAACA 59.250 34.615 0.00 0.00 0.00 3.33
623 871 7.435192 GCAGCTTAAAGTAAAACAAGTCAACAT 59.565 33.333 0.00 0.00 0.00 2.71
636 1457 5.922544 ACAAGTCAACATTTGAATTAGCAGC 59.077 36.000 1.63 0.00 45.07 5.25
639 1460 6.154445 AGTCAACATTTGAATTAGCAGCTTG 58.846 36.000 0.00 0.00 42.15 4.01
640 1461 6.016024 AGTCAACATTTGAATTAGCAGCTTGA 60.016 34.615 0.00 0.00 42.15 3.02
645 1466 7.533426 ACATTTGAATTAGCAGCTTGAACTAG 58.467 34.615 0.00 0.00 0.00 2.57
647 1468 7.928307 TTTGAATTAGCAGCTTGAACTAGAT 57.072 32.000 0.00 0.00 0.00 1.98
675 1496 8.748380 AGTTTATGCATGAGAAAAACTAAAGC 57.252 30.769 18.53 0.66 38.31 3.51
676 1497 7.814587 AGTTTATGCATGAGAAAAACTAAAGCC 59.185 33.333 18.53 0.00 38.31 4.35
677 1498 4.519540 TGCATGAGAAAAACTAAAGCCC 57.480 40.909 0.00 0.00 0.00 5.19
678 1499 3.258123 TGCATGAGAAAAACTAAAGCCCC 59.742 43.478 0.00 0.00 0.00 5.80
736 1576 2.758423 GCCCCGTTCTGTTAATCCATTT 59.242 45.455 0.00 0.00 0.00 2.32
795 1635 3.804329 GCCGGCCCCCTGTGATTA 61.804 66.667 18.11 0.00 0.00 1.75
908 1868 2.907179 CGGGGACTTTCCAGGGCTT 61.907 63.158 0.00 0.00 38.64 4.35
945 1905 0.179062 CATCCTGTGGCTAGTGCTCC 60.179 60.000 0.00 0.00 39.59 4.70
949 1909 1.536418 TGTGGCTAGTGCTCCCAGT 60.536 57.895 0.00 0.00 39.59 4.00
976 1936 0.105408 TCTCCGCCTTATAAACCGCC 59.895 55.000 0.29 0.00 0.00 6.13
1095 2055 3.565214 TCCAAACCCTCGCTGCCA 61.565 61.111 0.00 0.00 0.00 4.92
1647 2630 3.592814 TCCGCTGTATCGCCGGAG 61.593 66.667 5.05 0.00 45.30 4.63
1778 2761 1.302832 CCACAGAGGTGTTGGAGGC 60.303 63.158 0.00 0.00 43.71 4.70
1779 2762 1.451504 CACAGAGGTGTTGGAGGCA 59.548 57.895 0.00 0.00 40.24 4.75
1981 2972 3.243873 CCGCCTAGCTTCTGTTGATATCA 60.244 47.826 0.00 0.00 0.00 2.15
2065 3057 6.060788 ACCAAAGCAAATTTCAGCCAATTTA 58.939 32.000 0.00 0.00 35.09 1.40
2298 3291 5.499139 ACCGTAGCCAAATTCAATATGTG 57.501 39.130 0.00 0.00 0.00 3.21
2417 3411 3.788333 ATGCCATGTCTGCACAATAAC 57.212 42.857 0.00 0.00 42.38 1.89
2452 3446 4.467198 AACTGGTCCTTAAGATGTACCG 57.533 45.455 3.36 5.61 32.69 4.02
2725 3819 4.563786 GCTCAAGTAACTGGTCCTAAAGCT 60.564 45.833 0.00 0.00 0.00 3.74
2790 3884 6.561737 TGACAGTCACTAGTCTAGAAACTG 57.438 41.667 26.95 26.95 42.24 3.16
2871 3965 0.989164 GCGCTTGGTTTTATTTCCGC 59.011 50.000 0.00 0.00 0.00 5.54
2902 4151 6.540189 GCTGACATTGTGTGATTACTAGGAAT 59.460 38.462 0.00 0.00 0.00 3.01
3075 4335 4.653801 ACATTTTTGTCACCCTTAAAGGCT 59.346 37.500 0.00 0.00 32.73 4.58
3092 4352 1.151172 GCTTTGTGTTTGGTTGCCCG 61.151 55.000 0.00 0.00 0.00 6.13
3270 4533 7.652909 TGATTTGTCTGTTGCTTTTATTTGGAG 59.347 33.333 0.00 0.00 0.00 3.86
3376 4641 8.428536 GCACATAAAGAATACGAAGCTATAGTG 58.571 37.037 0.84 0.00 0.00 2.74
3680 4945 3.650281 TGGAGAGCAAATGGAGCATTA 57.350 42.857 0.00 0.00 32.43 1.90
3735 5002 2.808906 ATGTTCCCCACTTTCTAGCC 57.191 50.000 0.00 0.00 0.00 3.93
3819 5086 3.172229 AGTTCGCCTTATTCTGAGCTC 57.828 47.619 6.82 6.82 0.00 4.09
3848 5115 4.270566 GCATCTCTTACTCTGAACTGCATG 59.729 45.833 0.00 0.00 0.00 4.06
3897 5164 7.692460 TTGTTGTTGATTCTCAGCATCTTAT 57.308 32.000 0.00 0.00 37.44 1.73
3906 5173 8.260114 TGATTCTCAGCATCTTATCAACTGTTA 58.740 33.333 0.00 0.00 0.00 2.41
3907 5174 7.834068 TTCTCAGCATCTTATCAACTGTTAC 57.166 36.000 0.00 0.00 0.00 2.50
4087 5354 0.895100 ATCGGGTGTGCACTGCAAAT 60.895 50.000 19.41 3.68 41.47 2.32
4102 5369 8.079809 TGCACTGCAAATCTTATGAATCATATG 58.920 33.333 0.00 6.78 34.76 1.78
4127 5394 8.787818 TGACCCACTCCTATTCCTATTTATTTT 58.212 33.333 0.00 0.00 0.00 1.82
4241 5508 6.310711 CGGAGATTCAAGTAAGTAACCAAGTC 59.689 42.308 0.00 0.00 0.00 3.01
4347 5617 6.263842 TGATGTTATCTTCATTGCAGGAATCC 59.736 38.462 3.70 0.00 0.00 3.01
4389 5659 3.782523 TGCCAATAGAGGAGAAATCTGGT 59.217 43.478 0.00 0.00 0.00 4.00
4435 5705 2.101415 TGTATTGGCAGGACAGATCTCG 59.899 50.000 0.00 0.00 0.00 4.04
4506 5776 4.888326 ATCTCCATCTGAGGCATCTAAC 57.112 45.455 0.00 0.00 41.76 2.34
4509 5779 1.688735 CCATCTGAGGCATCTAACGGA 59.311 52.381 0.00 0.00 0.00 4.69
4535 5805 1.544314 GCAGAGGCAACCTGAAGAACT 60.544 52.381 5.88 0.00 40.72 3.01
4576 5846 7.121382 TGGCAAAAGAAAGGATAGAGATTGAT 58.879 34.615 0.00 0.00 0.00 2.57
4620 5896 1.401552 GAAGCATGCCGTATTTCTGCA 59.598 47.619 15.66 0.00 40.27 4.41
4626 5902 1.785321 CCGTATTTCTGCAACGCGT 59.215 52.632 5.58 5.58 35.36 6.01
4667 5944 2.188817 GTAGTCCAGGAACAGGGATGT 58.811 52.381 0.00 0.00 36.51 3.06
4668 5945 0.987294 AGTCCAGGAACAGGGATGTG 59.013 55.000 0.00 0.00 36.51 3.21
4776 6053 5.168526 TGGTTCAGTTTTCATCGAGTTTG 57.831 39.130 0.00 0.00 0.00 2.93
4803 6080 1.761784 TGGGCAAAAGAACTGCATTGT 59.238 42.857 0.00 0.00 41.78 2.71
4822 6099 8.243426 TGCATTGTTTCAAAGGATAGTGTTATC 58.757 33.333 0.00 0.00 35.87 1.75
4888 6165 4.173036 ACCATTTGTTTTCCGTGCTATG 57.827 40.909 0.00 0.00 0.00 2.23
4894 6171 6.576551 TTTGTTTTCCGTGCTATGTTTTTC 57.423 33.333 0.00 0.00 0.00 2.29
4895 6172 4.612943 TGTTTTCCGTGCTATGTTTTTCC 58.387 39.130 0.00 0.00 0.00 3.13
4915 6192 4.858850 TCCTTGGCAATGATAGTGTGAAT 58.141 39.130 0.00 0.00 0.00 2.57
4928 6205 8.763049 TGATAGTGTGAATAACTGAACAAGAG 57.237 34.615 0.00 0.00 0.00 2.85
4936 6213 0.674895 ACTGAACAAGAGCGGCCATC 60.675 55.000 2.24 0.00 0.00 3.51
4941 6218 1.741401 CAAGAGCGGCCATCGTTGA 60.741 57.895 2.24 0.00 41.72 3.18
4942 6219 1.448540 AAGAGCGGCCATCGTTGAG 60.449 57.895 2.24 0.00 41.72 3.02
4946 6223 2.325082 GCGGCCATCGTTGAGTGTT 61.325 57.895 2.24 0.00 41.72 3.32
4947 6224 1.017177 GCGGCCATCGTTGAGTGTTA 61.017 55.000 2.24 0.00 41.72 2.41
4948 6225 0.719465 CGGCCATCGTTGAGTGTTAC 59.281 55.000 2.24 0.00 0.00 2.50
4949 6226 1.671850 CGGCCATCGTTGAGTGTTACT 60.672 52.381 2.24 0.00 0.00 2.24
4950 6227 2.000447 GGCCATCGTTGAGTGTTACTC 59.000 52.381 0.00 2.11 45.26 2.59
4951 6228 2.000447 GCCATCGTTGAGTGTTACTCC 59.000 52.381 6.52 0.00 44.44 3.85
4952 6229 2.618053 CCATCGTTGAGTGTTACTCCC 58.382 52.381 6.52 0.00 44.44 4.30
4953 6230 2.233922 CCATCGTTGAGTGTTACTCCCT 59.766 50.000 6.52 0.00 44.44 4.20
4954 6231 3.512680 CATCGTTGAGTGTTACTCCCTC 58.487 50.000 6.52 0.00 44.44 4.30
4955 6232 1.891150 TCGTTGAGTGTTACTCCCTCC 59.109 52.381 6.52 0.00 44.44 4.30
4956 6233 1.402456 CGTTGAGTGTTACTCCCTCCG 60.402 57.143 6.52 0.83 44.44 4.63
4957 6234 1.617357 GTTGAGTGTTACTCCCTCCGT 59.383 52.381 6.52 0.00 44.44 4.69
4958 6235 1.542492 TGAGTGTTACTCCCTCCGTC 58.458 55.000 6.52 0.00 44.44 4.79
4959 6236 0.816373 GAGTGTTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 39.28 4.79
4960 6237 0.964358 AGTGTTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
4961 6238 1.679977 TGTTACTCCCTCCGTCCGG 60.680 63.158 0.00 0.00 0.00 5.14
4962 6239 1.379044 GTTACTCCCTCCGTCCGGA 60.379 63.158 0.00 0.00 42.90 5.14
4963 6240 0.967380 GTTACTCCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
4964 6241 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
4965 6242 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4966 6243 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4967 6244 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4968 6245 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4969 6246 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4970 6247 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4971 6248 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4972 6249 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4973 6250 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4974 6251 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4975 6252 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
4976 6253 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
4977 6254 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
4978 6255 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
4979 6256 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
4980 6257 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
4981 6258 7.201574 CGTCCGGAAATACTTGTCATTGAAATA 60.202 37.037 5.23 0.00 0.00 1.40
4982 6259 8.122952 GTCCGGAAATACTTGTCATTGAAATAG 58.877 37.037 5.23 0.00 0.00 1.73
4983 6260 8.044309 TCCGGAAATACTTGTCATTGAAATAGA 58.956 33.333 0.00 0.00 0.00 1.98
4984 6261 8.840321 CCGGAAATACTTGTCATTGAAATAGAT 58.160 33.333 0.00 0.00 0.00 1.98
4985 6262 9.655769 CGGAAATACTTGTCATTGAAATAGATG 57.344 33.333 0.00 0.00 0.00 2.90
5028 6305 9.553064 AGTTCTAGATACATCCATTTTGATGAC 57.447 33.333 7.93 0.44 43.94 3.06
5029 6306 9.330063 GTTCTAGATACATCCATTTTGATGACA 57.670 33.333 7.93 0.00 43.94 3.58
5030 6307 9.904198 TTCTAGATACATCCATTTTGATGACAA 57.096 29.630 7.93 0.00 43.94 3.18
5031 6308 9.551734 TCTAGATACATCCATTTTGATGACAAG 57.448 33.333 7.93 0.00 43.94 3.16
5032 6309 9.334947 CTAGATACATCCATTTTGATGACAAGT 57.665 33.333 7.93 0.00 43.94 3.16
5034 6311 9.857656 AGATACATCCATTTTGATGACAAGTAT 57.142 29.630 7.93 0.00 43.94 2.12
5040 6317 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
5041 6318 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
5042 6319 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
5043 6320 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
5044 6321 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
5045 6322 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
5046 6323 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
5047 6324 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
5048 6325 4.202377 TGACAAGTATTTTTGGACGGAGGA 60.202 41.667 0.00 0.00 32.32 3.71
5049 6326 4.721132 ACAAGTATTTTTGGACGGAGGAA 58.279 39.130 0.00 0.00 32.32 3.36
5050 6327 4.760204 ACAAGTATTTTTGGACGGAGGAAG 59.240 41.667 0.00 0.00 32.32 3.46
5079 6356 8.951243 AGTTTCAGAAAAGCTATTAGAATGTCC 58.049 33.333 0.00 0.00 0.00 4.02
5104 6471 9.165035 CCATTTTGATGCAATGTATTTTTAGGT 57.835 29.630 0.00 0.00 30.73 3.08
5109 6476 9.853555 TTGATGCAATGTATTTTTAGGTTACAG 57.146 29.630 0.00 0.00 30.03 2.74
5110 6477 7.973388 TGATGCAATGTATTTTTAGGTTACAGC 59.027 33.333 0.00 0.00 30.03 4.40
5111 6478 7.461182 TGCAATGTATTTTTAGGTTACAGCT 57.539 32.000 0.00 0.00 30.03 4.24
5128 7185 1.797025 GCTCTTAACTTGAGCGTGGT 58.203 50.000 0.00 0.00 45.73 4.16
5129 7186 1.461127 GCTCTTAACTTGAGCGTGGTG 59.539 52.381 0.00 0.00 45.73 4.17
5131 7188 3.589988 CTCTTAACTTGAGCGTGGTGAT 58.410 45.455 0.00 0.00 0.00 3.06
5133 7190 2.093306 TAACTTGAGCGTGGTGATGG 57.907 50.000 0.00 0.00 0.00 3.51
5144 7201 2.094078 CGTGGTGATGGCAATTGGAAAT 60.094 45.455 7.72 0.00 0.00 2.17
5148 7205 5.936956 GTGGTGATGGCAATTGGAAATTTAA 59.063 36.000 7.72 0.00 0.00 1.52
5149 7206 5.936956 TGGTGATGGCAATTGGAAATTTAAC 59.063 36.000 7.72 0.00 0.00 2.01
5151 7208 5.637387 GTGATGGCAATTGGAAATTTAACGT 59.363 36.000 7.72 0.00 0.00 3.99
5154 7211 7.329717 TGATGGCAATTGGAAATTTAACGTTAC 59.670 33.333 7.70 0.00 0.00 2.50
5155 7212 5.927115 TGGCAATTGGAAATTTAACGTTACC 59.073 36.000 7.70 6.24 0.00 2.85
5156 7213 6.160684 GGCAATTGGAAATTTAACGTTACCT 58.839 36.000 7.70 0.00 0.00 3.08
5165 7224 7.094933 GGAAATTTAACGTTACCTGTGATCAGT 60.095 37.037 7.70 0.00 39.82 3.41
5268 7384 8.585471 ACAAAAACTGATACCATGATCAAGAT 57.415 30.769 0.00 0.00 35.44 2.40
5286 7402 5.775195 TCAAGATATTATTCAGAGGCCGAGA 59.225 40.000 0.00 0.00 0.00 4.04
5299 7415 5.070180 CAGAGGCCGAGATGAATATCCATAT 59.930 44.000 0.00 0.00 33.64 1.78
5300 7416 6.266330 CAGAGGCCGAGATGAATATCCATATA 59.734 42.308 0.00 0.00 33.64 0.86
5329 7445 6.668541 TTAAGAGACTGCACATTAAGATGC 57.331 37.500 6.75 6.75 42.40 3.91
5335 7451 3.693085 ACTGCACATTAAGATGCCAAGAG 59.307 43.478 10.37 4.84 41.33 2.85
5452 7568 0.887933 ATTTCCCGAACGCTGCAAAT 59.112 45.000 0.00 0.00 0.00 2.32
5506 7622 5.048782 GCAACACATGATTGTAGGAAGAACA 60.049 40.000 0.00 0.00 33.76 3.18
5509 7625 7.765695 ACACATGATTGTAGGAAGAACAATT 57.234 32.000 0.00 0.00 45.24 2.32
5552 7668 9.708092 ATCGAAGCATATTATCCATGAGATATG 57.292 33.333 0.00 4.09 37.31 1.78
5558 7674 8.512956 GCATATTATCCATGAGATATGATTGCC 58.487 37.037 15.52 2.10 37.31 4.52
5568 7684 7.734924 TGAGATATGATTGCCATTTGTCTAC 57.265 36.000 0.00 0.00 36.71 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.073549 TCACGGGTAAGTAAAAACCATGG 58.926 43.478 11.19 11.19 37.51 3.66
88 89 3.252458 GTCAGTTGTACAAACCCCATCAC 59.748 47.826 10.51 0.00 0.00 3.06
96 97 2.616842 CAGGTGGGTCAGTTGTACAAAC 59.383 50.000 10.51 5.08 0.00 2.93
115 116 6.975197 ACTCATCGTACATAGTTGACATTCAG 59.025 38.462 0.00 0.00 0.00 3.02
138 139 9.965824 CAAAGGACTTCATTTTAATGTTGTACT 57.034 29.630 2.66 6.10 36.36 2.73
154 155 3.058224 CACGAATTGACCCAAAGGACTTC 60.058 47.826 0.00 0.00 36.73 3.01
159 160 5.293569 GTCTATACACGAATTGACCCAAAGG 59.706 44.000 0.00 0.00 40.04 3.11
163 164 5.408880 TTGTCTATACACGAATTGACCCA 57.591 39.130 0.00 0.00 34.61 4.51
181 182 3.869832 GGGCGAGAATTAACTACCTTGTC 59.130 47.826 0.00 0.00 0.00 3.18
199 200 2.874701 CCTCTTATGATCAAGTTGGGCG 59.125 50.000 0.00 0.00 0.00 6.13
201 202 5.355350 GTGAACCTCTTATGATCAAGTTGGG 59.645 44.000 0.00 2.70 0.00 4.12
203 204 5.939883 TGGTGAACCTCTTATGATCAAGTTG 59.060 40.000 0.00 0.00 36.82 3.16
204 205 6.126863 TGGTGAACCTCTTATGATCAAGTT 57.873 37.500 0.00 0.00 36.82 2.66
206 207 4.574013 GCTGGTGAACCTCTTATGATCAAG 59.426 45.833 0.00 0.00 36.82 3.02
207 208 4.019411 TGCTGGTGAACCTCTTATGATCAA 60.019 41.667 0.00 0.00 36.82 2.57
208 209 3.519107 TGCTGGTGAACCTCTTATGATCA 59.481 43.478 0.00 0.00 36.82 2.92
210 211 3.370953 GGTGCTGGTGAACCTCTTATGAT 60.371 47.826 0.37 0.00 38.90 2.45
211 212 2.027192 GGTGCTGGTGAACCTCTTATGA 60.027 50.000 0.37 0.00 38.90 2.15
212 213 2.359900 GGTGCTGGTGAACCTCTTATG 58.640 52.381 0.37 0.00 38.90 1.90
213 214 1.066143 CGGTGCTGGTGAACCTCTTAT 60.066 52.381 0.37 0.00 39.85 1.73
214 215 0.320374 CGGTGCTGGTGAACCTCTTA 59.680 55.000 0.37 0.00 39.85 2.10
215 216 1.071471 CGGTGCTGGTGAACCTCTT 59.929 57.895 0.37 0.00 39.85 2.85
216 217 2.743718 CGGTGCTGGTGAACCTCT 59.256 61.111 0.37 0.00 39.85 3.69
217 218 2.358737 CCGGTGCTGGTGAACCTC 60.359 66.667 0.37 0.00 39.85 3.85
218 219 4.643387 GCCGGTGCTGGTGAACCT 62.643 66.667 1.90 0.00 39.85 3.50
219 220 4.947147 TGCCGGTGCTGGTGAACC 62.947 66.667 1.90 0.00 38.58 3.62
220 221 0.958382 TATTGCCGGTGCTGGTGAAC 60.958 55.000 1.90 0.00 38.71 3.18
221 222 0.958382 GTATTGCCGGTGCTGGTGAA 60.958 55.000 1.90 0.00 38.71 3.18
233 234 0.661020 GGTATGTGCACCGTATTGCC 59.339 55.000 15.69 3.47 42.25 4.52
241 242 1.066605 AGTACGATCGGTATGTGCACC 59.933 52.381 20.98 0.00 32.74 5.01
257 258 4.113354 CGAGTTCTTGCCCAAGATAGTAC 58.887 47.826 11.17 6.94 45.78 2.73
261 262 1.277842 TGCGAGTTCTTGCCCAAGATA 59.722 47.619 11.17 1.29 45.78 1.98
266 267 0.881118 GAATTGCGAGTTCTTGCCCA 59.119 50.000 9.23 0.00 0.00 5.36
267 268 0.881118 TGAATTGCGAGTTCTTGCCC 59.119 50.000 9.23 0.00 0.00 5.36
286 287 2.452505 CTCGTCCTTCTTCTCCTCCTT 58.547 52.381 0.00 0.00 0.00 3.36
289 290 1.746787 GTCCTCGTCCTTCTTCTCCTC 59.253 57.143 0.00 0.00 0.00 3.71
290 291 1.842052 GTCCTCGTCCTTCTTCTCCT 58.158 55.000 0.00 0.00 0.00 3.69
291 292 0.452585 CGTCCTCGTCCTTCTTCTCC 59.547 60.000 0.00 0.00 0.00 3.71
293 294 1.166989 GTCGTCCTCGTCCTTCTTCT 58.833 55.000 0.00 0.00 38.33 2.85
294 295 0.179194 CGTCGTCCTCGTCCTTCTTC 60.179 60.000 0.00 0.00 38.33 2.87
295 296 1.584380 CCGTCGTCCTCGTCCTTCTT 61.584 60.000 0.00 0.00 38.33 2.52
297 298 2.484203 CCGTCGTCCTCGTCCTTC 59.516 66.667 0.00 0.00 38.33 3.46
298 299 3.745803 GCCGTCGTCCTCGTCCTT 61.746 66.667 0.00 0.00 38.33 3.36
316 317 2.791927 GGAAAATGCGGCGAGGTC 59.208 61.111 12.98 0.00 0.00 3.85
318 319 3.876198 CCGGAAAATGCGGCGAGG 61.876 66.667 12.98 0.00 46.11 4.63
325 326 0.733150 GACTACAGGCCGGAAAATGC 59.267 55.000 10.86 0.00 0.00 3.56
326 327 1.006832 CGACTACAGGCCGGAAAATG 58.993 55.000 10.86 0.00 0.00 2.32
327 328 0.743345 GCGACTACAGGCCGGAAAAT 60.743 55.000 10.86 0.00 0.00 1.82
329 330 2.263540 GCGACTACAGGCCGGAAA 59.736 61.111 10.86 0.00 0.00 3.13
330 331 4.124351 CGCGACTACAGGCCGGAA 62.124 66.667 10.86 0.00 0.00 4.30
336 337 1.745320 AATAGGGCCGCGACTACAGG 61.745 60.000 8.23 0.00 0.00 4.00
337 338 0.104304 AAATAGGGCCGCGACTACAG 59.896 55.000 8.23 0.00 0.00 2.74
338 339 0.538118 AAAATAGGGCCGCGACTACA 59.462 50.000 8.23 0.00 0.00 2.74
339 340 0.935196 CAAAATAGGGCCGCGACTAC 59.065 55.000 8.23 0.00 0.00 2.73
340 341 0.538118 ACAAAATAGGGCCGCGACTA 59.462 50.000 8.23 7.71 0.00 2.59
341 342 0.322187 AACAAAATAGGGCCGCGACT 60.322 50.000 8.23 5.30 0.00 4.18
342 343 0.524414 AAACAAAATAGGGCCGCGAC 59.476 50.000 8.23 0.00 0.00 5.19
344 345 2.073117 AAAAACAAAATAGGGCCGCG 57.927 45.000 0.00 0.00 0.00 6.46
378 626 8.332464 CGGCGAATTGAAATAGTTTCTTACATA 58.668 33.333 0.00 0.00 40.32 2.29
383 631 4.698304 TCCGGCGAATTGAAATAGTTTCTT 59.302 37.500 9.30 0.00 40.32 2.52
384 632 4.258543 TCCGGCGAATTGAAATAGTTTCT 58.741 39.130 9.30 0.00 40.32 2.52
385 633 4.609691 TCCGGCGAATTGAAATAGTTTC 57.390 40.909 9.30 0.00 40.08 2.78
386 634 5.576447 ATTCCGGCGAATTGAAATAGTTT 57.424 34.783 9.30 0.00 35.00 2.66
387 635 6.687081 TTATTCCGGCGAATTGAAATAGTT 57.313 33.333 9.30 0.00 39.49 2.24
388 636 6.877611 ATTATTCCGGCGAATTGAAATAGT 57.122 33.333 9.30 0.00 39.49 2.12
392 640 9.619316 CATTTATATTATTCCGGCGAATTGAAA 57.381 29.630 9.30 4.73 39.49 2.69
393 641 8.788806 ACATTTATATTATTCCGGCGAATTGAA 58.211 29.630 9.30 3.15 39.49 2.69
394 642 8.330466 ACATTTATATTATTCCGGCGAATTGA 57.670 30.769 9.30 0.00 39.49 2.57
396 644 9.974980 AAAACATTTATATTATTCCGGCGAATT 57.025 25.926 9.30 0.00 39.49 2.17
399 647 6.858993 GCAAAACATTTATATTATTCCGGCGA 59.141 34.615 9.30 0.00 0.00 5.54
400 648 6.088883 GGCAAAACATTTATATTATTCCGGCG 59.911 38.462 0.00 0.00 0.00 6.46
401 649 6.088883 CGGCAAAACATTTATATTATTCCGGC 59.911 38.462 0.00 0.00 0.00 6.13
402 650 7.364200 TCGGCAAAACATTTATATTATTCCGG 58.636 34.615 0.00 0.00 0.00 5.14
403 651 8.789881 TTCGGCAAAACATTTATATTATTCCG 57.210 30.769 0.00 0.00 0.00 4.30
412 660 8.037758 TGGACAAATATTCGGCAAAACATTTAT 58.962 29.630 0.00 0.00 0.00 1.40
414 662 6.226787 TGGACAAATATTCGGCAAAACATTT 58.773 32.000 0.00 0.00 0.00 2.32
416 664 5.398603 TGGACAAATATTCGGCAAAACAT 57.601 34.783 0.00 0.00 0.00 2.71
417 665 4.804108 CTGGACAAATATTCGGCAAAACA 58.196 39.130 0.00 0.00 0.00 2.83
418 666 3.612423 GCTGGACAAATATTCGGCAAAAC 59.388 43.478 1.78 0.00 0.00 2.43
420 668 3.088532 AGCTGGACAAATATTCGGCAAA 58.911 40.909 8.04 0.00 0.00 3.68
421 669 2.682856 GAGCTGGACAAATATTCGGCAA 59.317 45.455 0.00 0.00 0.00 4.52
425 673 2.033407 CAGCGAGCTGGACAAATATTCG 60.033 50.000 16.69 0.00 40.17 3.34
426 674 3.198068 TCAGCGAGCTGGACAAATATTC 58.802 45.455 22.93 0.00 43.75 1.75
428 676 2.988010 TCAGCGAGCTGGACAAATAT 57.012 45.000 22.93 0.00 43.75 1.28
429 677 2.760634 TTCAGCGAGCTGGACAAATA 57.239 45.000 22.93 1.01 43.75 1.40
430 678 2.119801 ATTCAGCGAGCTGGACAAAT 57.880 45.000 22.93 13.13 43.75 2.32
431 679 1.896220 AATTCAGCGAGCTGGACAAA 58.104 45.000 22.93 11.51 43.75 2.83
432 680 1.896220 AAATTCAGCGAGCTGGACAA 58.104 45.000 22.93 11.84 43.75 3.18
433 681 1.896220 AAAATTCAGCGAGCTGGACA 58.104 45.000 22.93 9.58 43.75 4.02
434 682 3.262420 TCTAAAATTCAGCGAGCTGGAC 58.738 45.455 22.93 0.00 43.75 4.02
435 683 3.610040 TCTAAAATTCAGCGAGCTGGA 57.390 42.857 22.93 16.57 43.75 3.86
436 684 4.333649 TGAATCTAAAATTCAGCGAGCTGG 59.666 41.667 22.93 7.02 43.75 4.85
437 685 5.475273 TGAATCTAAAATTCAGCGAGCTG 57.525 39.130 18.20 18.20 44.86 4.24
438 686 6.500684 TTTGAATCTAAAATTCAGCGAGCT 57.499 33.333 0.00 0.00 38.98 4.09
439 687 6.582295 TGTTTTGAATCTAAAATTCAGCGAGC 59.418 34.615 1.24 0.00 38.98 5.03
440 688 8.506140 TTGTTTTGAATCTAAAATTCAGCGAG 57.494 30.769 1.24 0.00 38.98 5.03
441 689 9.474920 AATTGTTTTGAATCTAAAATTCAGCGA 57.525 25.926 1.24 0.00 38.98 4.93
453 701 8.495148 GCGGATGTTTTAAATTGTTTTGAATCT 58.505 29.630 0.00 0.00 0.00 2.40
454 702 7.744276 GGCGGATGTTTTAAATTGTTTTGAATC 59.256 33.333 0.00 0.00 0.00 2.52
455 703 7.443879 AGGCGGATGTTTTAAATTGTTTTGAAT 59.556 29.630 0.00 0.00 0.00 2.57
456 704 6.763610 AGGCGGATGTTTTAAATTGTTTTGAA 59.236 30.769 0.00 0.00 0.00 2.69
457 705 6.201806 CAGGCGGATGTTTTAAATTGTTTTGA 59.798 34.615 0.00 0.00 0.00 2.69
458 706 6.361899 CAGGCGGATGTTTTAAATTGTTTTG 58.638 36.000 0.00 0.00 0.00 2.44
459 707 5.468409 CCAGGCGGATGTTTTAAATTGTTTT 59.532 36.000 0.00 0.00 0.00 2.43
460 708 4.994217 CCAGGCGGATGTTTTAAATTGTTT 59.006 37.500 0.00 0.00 0.00 2.83
461 709 4.562552 CCCAGGCGGATGTTTTAAATTGTT 60.563 41.667 0.00 0.00 0.00 2.83
462 710 3.056179 CCCAGGCGGATGTTTTAAATTGT 60.056 43.478 0.00 0.00 0.00 2.71
463 711 3.520569 CCCAGGCGGATGTTTTAAATTG 58.479 45.455 0.00 0.00 0.00 2.32
464 712 2.499693 CCCCAGGCGGATGTTTTAAATT 59.500 45.455 0.00 0.00 0.00 1.82
465 713 2.107366 CCCCAGGCGGATGTTTTAAAT 58.893 47.619 0.00 0.00 0.00 1.40
466 714 1.551452 CCCCAGGCGGATGTTTTAAA 58.449 50.000 0.00 0.00 0.00 1.52
467 715 0.968393 GCCCCAGGCGGATGTTTTAA 60.968 55.000 0.00 0.00 39.62 1.52
468 716 1.379309 GCCCCAGGCGGATGTTTTA 60.379 57.895 0.00 0.00 39.62 1.52
469 717 2.679996 GCCCCAGGCGGATGTTTT 60.680 61.111 0.00 0.00 39.62 2.43
503 751 1.749258 GGGCGATCTGGTTCCCAAC 60.749 63.158 0.00 0.00 38.62 3.77
504 752 2.674754 GGGCGATCTGGTTCCCAA 59.325 61.111 0.00 0.00 38.62 4.12
505 753 2.539277 TAGGGGCGATCTGGTTCCCA 62.539 60.000 0.00 0.00 40.53 4.37
506 754 1.759459 CTAGGGGCGATCTGGTTCCC 61.759 65.000 0.00 0.00 38.03 3.97
507 755 1.749033 CTAGGGGCGATCTGGTTCC 59.251 63.158 0.00 0.00 0.00 3.62
508 756 1.749033 CCTAGGGGCGATCTGGTTC 59.251 63.158 0.00 0.00 0.00 3.62
509 757 3.971894 CCTAGGGGCGATCTGGTT 58.028 61.111 0.00 0.00 0.00 3.67
519 767 0.179054 GCTAAAAGTCGGCCTAGGGG 60.179 60.000 11.72 0.00 0.00 4.79
520 768 0.529992 CGCTAAAAGTCGGCCTAGGG 60.530 60.000 11.72 0.00 0.00 3.53
521 769 1.152383 GCGCTAAAAGTCGGCCTAGG 61.152 60.000 3.67 3.67 0.00 3.02
522 770 1.152383 GGCGCTAAAAGTCGGCCTAG 61.152 60.000 7.64 0.00 44.06 3.02
523 771 1.153509 GGCGCTAAAAGTCGGCCTA 60.154 57.895 7.64 0.00 44.06 3.93
524 772 2.436115 GGCGCTAAAAGTCGGCCT 60.436 61.111 7.64 0.00 44.06 5.19
525 773 3.861263 CGGCGCTAAAAGTCGGCC 61.861 66.667 7.64 0.00 46.53 6.13
526 774 3.861263 CCGGCGCTAAAAGTCGGC 61.861 66.667 7.64 0.00 45.92 5.54
527 775 1.963190 GAACCGGCGCTAAAAGTCGG 61.963 60.000 15.88 15.88 45.42 4.79
528 776 1.418755 GAACCGGCGCTAAAAGTCG 59.581 57.895 7.64 0.00 0.00 4.18
529 777 1.287041 ACGAACCGGCGCTAAAAGTC 61.287 55.000 7.64 0.00 33.86 3.01
530 778 1.287041 GACGAACCGGCGCTAAAAGT 61.287 55.000 7.64 0.48 33.86 2.66
531 779 1.418755 GACGAACCGGCGCTAAAAG 59.581 57.895 7.64 0.00 33.86 2.27
532 780 2.028733 GGACGAACCGGCGCTAAAA 61.029 57.895 7.64 0.00 34.63 1.52
533 781 2.432972 GGACGAACCGGCGCTAAA 60.433 61.111 7.64 0.00 34.63 1.85
534 782 4.440127 GGGACGAACCGGCGCTAA 62.440 66.667 7.64 0.00 44.47 3.09
557 805 8.512138 GGCTTGTTTTACTTTAAGATAAGAGCA 58.488 33.333 0.00 0.00 0.00 4.26
558 806 8.512138 TGGCTTGTTTTACTTTAAGATAAGAGC 58.488 33.333 0.00 0.00 0.00 4.09
561 809 9.959749 TGTTGGCTTGTTTTACTTTAAGATAAG 57.040 29.630 0.00 0.00 0.00 1.73
564 812 9.830975 AAATGTTGGCTTGTTTTACTTTAAGAT 57.169 25.926 0.00 0.00 0.00 2.40
565 813 9.092876 CAAATGTTGGCTTGTTTTACTTTAAGA 57.907 29.630 0.00 0.00 0.00 2.10
566 814 9.092876 TCAAATGTTGGCTTGTTTTACTTTAAG 57.907 29.630 0.00 0.00 0.00 1.85
567 815 9.436957 TTCAAATGTTGGCTTGTTTTACTTTAA 57.563 25.926 0.00 0.00 0.00 1.52
568 816 9.606631 ATTCAAATGTTGGCTTGTTTTACTTTA 57.393 25.926 0.00 0.00 0.00 1.85
569 817 7.913674 TTCAAATGTTGGCTTGTTTTACTTT 57.086 28.000 0.00 0.00 0.00 2.66
570 818 8.504812 AATTCAAATGTTGGCTTGTTTTACTT 57.495 26.923 0.00 0.00 0.00 2.24
571 819 9.260002 CTAATTCAAATGTTGGCTTGTTTTACT 57.740 29.630 0.00 0.00 0.00 2.24
572 820 8.009409 GCTAATTCAAATGTTGGCTTGTTTTAC 58.991 33.333 0.00 0.00 0.00 2.01
573 821 7.712639 TGCTAATTCAAATGTTGGCTTGTTTTA 59.287 29.630 0.00 0.00 33.58 1.52
574 822 6.541641 TGCTAATTCAAATGTTGGCTTGTTTT 59.458 30.769 0.00 0.00 33.58 2.43
575 823 6.054295 TGCTAATTCAAATGTTGGCTTGTTT 58.946 32.000 0.00 0.00 33.58 2.83
576 824 5.609423 TGCTAATTCAAATGTTGGCTTGTT 58.391 33.333 0.00 0.00 33.58 2.83
577 825 5.212532 TGCTAATTCAAATGTTGGCTTGT 57.787 34.783 0.00 0.00 33.58 3.16
578 826 4.092383 GCTGCTAATTCAAATGTTGGCTTG 59.908 41.667 0.00 0.00 33.58 4.01
579 827 4.020839 AGCTGCTAATTCAAATGTTGGCTT 60.021 37.500 0.00 0.00 33.58 4.35
580 828 3.512724 AGCTGCTAATTCAAATGTTGGCT 59.487 39.130 0.00 0.00 33.58 4.75
581 829 3.853475 AGCTGCTAATTCAAATGTTGGC 58.147 40.909 0.00 0.00 33.11 4.52
582 830 7.599998 ACTTTAAGCTGCTAATTCAAATGTTGG 59.400 33.333 0.90 0.00 0.00 3.77
583 831 8.524870 ACTTTAAGCTGCTAATTCAAATGTTG 57.475 30.769 0.90 0.00 0.00 3.33
597 845 6.750039 TGTTGACTTGTTTTACTTTAAGCTGC 59.250 34.615 0.00 0.00 0.00 5.25
600 848 9.900264 CAAATGTTGACTTGTTTTACTTTAAGC 57.100 29.630 0.00 0.00 0.00 3.09
608 856 9.809096 TGCTAATTCAAATGTTGACTTGTTTTA 57.191 25.926 4.40 0.00 39.87 1.52
609 857 8.715191 TGCTAATTCAAATGTTGACTTGTTTT 57.285 26.923 4.40 0.00 39.87 2.43
610 858 7.042523 GCTGCTAATTCAAATGTTGACTTGTTT 60.043 33.333 4.40 0.00 39.87 2.83
611 859 6.421801 GCTGCTAATTCAAATGTTGACTTGTT 59.578 34.615 4.40 0.00 39.87 2.83
612 860 5.922544 GCTGCTAATTCAAATGTTGACTTGT 59.077 36.000 4.40 0.00 39.87 3.16
613 861 6.154445 AGCTGCTAATTCAAATGTTGACTTG 58.846 36.000 0.00 0.00 39.87 3.16
614 862 6.336842 AGCTGCTAATTCAAATGTTGACTT 57.663 33.333 0.00 0.00 39.87 3.01
615 863 5.972107 AGCTGCTAATTCAAATGTTGACT 57.028 34.783 0.00 0.00 39.87 3.41
618 866 6.643770 AGTTCAAGCTGCTAATTCAAATGTTG 59.356 34.615 0.90 0.00 0.00 3.33
619 867 6.752168 AGTTCAAGCTGCTAATTCAAATGTT 58.248 32.000 0.90 0.00 0.00 2.71
620 868 6.336842 AGTTCAAGCTGCTAATTCAAATGT 57.663 33.333 0.90 0.00 0.00 2.71
621 869 7.755591 TCTAGTTCAAGCTGCTAATTCAAATG 58.244 34.615 0.90 0.00 0.00 2.32
622 870 7.928307 TCTAGTTCAAGCTGCTAATTCAAAT 57.072 32.000 0.90 0.00 0.00 2.32
623 871 7.928307 ATCTAGTTCAAGCTGCTAATTCAAA 57.072 32.000 0.90 0.00 0.00 2.69
633 1454 8.668353 TGCATAAACTTAATCTAGTTCAAGCTG 58.332 33.333 0.00 0.00 37.37 4.24
736 1576 5.924356 TCTCACAGTTATTCACTTGTTCCA 58.076 37.500 0.00 0.00 30.92 3.53
740 1580 6.595716 GGCTAATCTCACAGTTATTCACTTGT 59.404 38.462 0.00 0.00 30.92 3.16
795 1635 1.979693 GAGACGAGTGTGGAGCCCT 60.980 63.158 0.00 0.00 0.00 5.19
908 1868 1.295423 GAAGTGAGCGGGCCTAACA 59.705 57.895 0.84 0.00 0.00 2.41
945 1905 2.415010 CGGAGATGGCTCGACTGG 59.585 66.667 0.00 0.00 42.25 4.00
949 1909 0.827925 ATAAGGCGGAGATGGCTCGA 60.828 55.000 0.00 0.00 45.07 4.04
976 1936 1.448922 CTAGCCGAGGGGAGTTCGAG 61.449 65.000 0.00 0.00 40.36 4.04
1065 2025 1.600636 TTTGGACTTGGAGCCGCTG 60.601 57.895 0.00 0.00 0.00 5.18
1095 2055 1.909986 GGCTGGAGAGAAACCCTAACT 59.090 52.381 0.00 0.00 0.00 2.24
1660 2643 4.070552 GACCTCAAGGAGCGCGGT 62.071 66.667 12.23 12.23 38.94 5.68
1689 2672 1.966451 CACCTTGTCTGCGTTCCCC 60.966 63.158 0.00 0.00 0.00 4.81
1693 2676 2.037251 ACTCATACACCTTGTCTGCGTT 59.963 45.455 0.00 0.00 0.00 4.84
1778 2761 1.002366 CTTCTCGCTCCGAAACCATG 58.998 55.000 0.00 0.00 34.74 3.66
1779 2762 0.108138 CCTTCTCGCTCCGAAACCAT 60.108 55.000 0.00 0.00 34.74 3.55
1803 2786 1.153549 CTCAGCCTTACCAGCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
1981 2972 5.505181 AACTTCTGTGTATCCTCCATGTT 57.495 39.130 0.00 0.00 0.00 2.71
2065 3057 5.221925 CCAAGGGACAGTATATATGCACCTT 60.222 44.000 3.52 8.04 37.49 3.50
2212 3205 7.579339 TGTAAATCACATGATGACAGCTAGTCA 60.579 37.037 17.46 17.46 46.37 3.41
2213 3206 6.758416 TGTAAATCACATGATGACAGCTAGTC 59.242 38.462 0.00 8.75 41.24 2.59
2214 3207 6.643388 TGTAAATCACATGATGACAGCTAGT 58.357 36.000 0.00 0.00 41.24 2.57
2215 3208 7.543947 TTGTAAATCACATGATGACAGCTAG 57.456 36.000 0.00 0.00 41.24 3.42
2216 3209 7.823799 TCTTTGTAAATCACATGATGACAGCTA 59.176 33.333 0.00 2.02 41.24 3.32
2217 3210 6.656270 TCTTTGTAAATCACATGATGACAGCT 59.344 34.615 0.00 0.00 41.24 4.24
2309 3302 7.225397 GGCGATAGTTAACATAACGAATAAGC 58.775 38.462 8.61 0.19 39.35 3.09
2332 3326 5.306114 ACCATAGTTCTATAAACAGGGGC 57.694 43.478 0.00 0.00 0.00 5.80
2417 3411 4.021016 AGGACCAGTTACTTCAGTAAGCAG 60.021 45.833 0.00 0.00 40.74 4.24
2790 3884 2.571206 CGTTTTTCGTTAGCTGGCTTC 58.429 47.619 0.00 0.00 34.52 3.86
2871 3965 7.261325 AGTAATCACACAATGTCAGCTACTAG 58.739 38.462 0.00 0.00 0.00 2.57
3245 4507 7.867403 TCTCCAAATAAAAGCAACAGACAAATC 59.133 33.333 0.00 0.00 0.00 2.17
3253 4515 9.421806 CATGTATTTCTCCAAATAAAAGCAACA 57.578 29.630 0.00 0.00 36.43 3.33
3308 4571 9.252962 CAGAAGTCAAAATTTCAGCTTGTAAAT 57.747 29.630 0.00 0.00 0.00 1.40
3680 4945 0.618458 ACCCACTTGGCGATGTGTAT 59.382 50.000 12.61 0.00 37.83 2.29
3735 5002 2.205074 AGAAGTGCAAGAATATCCGCG 58.795 47.619 0.00 0.00 0.00 6.46
3819 5086 4.362932 TCAGAGTAAGAGATGCACTTCG 57.637 45.455 0.00 0.00 0.00 3.79
3836 5103 9.264719 CATATTAGTCAATACATGCAGTTCAGA 57.735 33.333 0.00 0.00 29.44 3.27
3897 5164 2.171027 ACCCAGGAAACGTAACAGTTGA 59.829 45.455 0.00 0.00 34.14 3.18
3906 5173 2.351706 TTAGCAAACCCAGGAAACGT 57.648 45.000 0.00 0.00 0.00 3.99
3907 5174 3.934457 ATTTAGCAAACCCAGGAAACG 57.066 42.857 0.00 0.00 0.00 3.60
4087 5354 6.789457 AGGAGTGGGTCATATGATTCATAAGA 59.211 38.462 9.02 8.73 29.74 2.10
4102 5369 9.067986 CAAAATAAATAGGAATAGGAGTGGGTC 57.932 37.037 0.00 0.00 0.00 4.46
4217 5484 7.159372 TGACTTGGTTACTTACTTGAATCTCC 58.841 38.462 0.00 0.00 0.00 3.71
4241 5508 9.255304 GATGATAGTAAGCTCTAGAAAAACCTG 57.745 37.037 0.00 0.00 0.00 4.00
4248 5515 5.182190 CCTGCGATGATAGTAAGCTCTAGAA 59.818 44.000 0.00 0.00 0.00 2.10
4250 5517 4.697828 TCCTGCGATGATAGTAAGCTCTAG 59.302 45.833 0.00 0.00 0.00 2.43
4308 5575 3.878086 AACATCAGTAACAGCACGTTG 57.122 42.857 2.05 0.00 38.63 4.10
4347 5617 0.803768 CGTGCCAAGATCCTGTCTCG 60.804 60.000 0.00 0.00 35.67 4.04
4389 5659 0.913205 AGGTCCTAGCTCTCTCGTCA 59.087 55.000 0.00 0.00 0.00 4.35
4435 5705 2.519780 TTCACGGGGTGGTTTGGC 60.520 61.111 0.00 0.00 33.87 4.52
4509 5779 4.357279 GGTTGCCTCTGCCCAGCT 62.357 66.667 0.00 0.00 36.33 4.24
4535 5805 2.031919 CAGTTACCGGTGCAGCCA 59.968 61.111 19.93 0.00 36.97 4.75
4620 5896 2.326550 CGCAGAACCAAACGCGTT 59.673 55.556 20.79 20.79 42.66 4.84
4626 5902 1.098712 AAAGCGGACGCAGAACCAAA 61.099 50.000 19.48 0.00 44.88 3.28
4667 5944 0.249120 CAGGGATGTCGCTAACACCA 59.751 55.000 0.00 0.00 41.75 4.17
4668 5945 0.535335 TCAGGGATGTCGCTAACACC 59.465 55.000 0.00 0.00 41.75 4.16
4786 6063 5.467902 TTGAAACAATGCAGTTCTTTTGC 57.532 34.783 0.00 0.00 41.86 3.68
4787 6064 6.313411 TCCTTTGAAACAATGCAGTTCTTTTG 59.687 34.615 0.00 0.00 0.00 2.44
4803 6080 9.123902 CATGGATGATAACACTATCCTTTGAAA 57.876 33.333 0.00 0.00 40.77 2.69
4822 6099 6.094464 ACTGTTGTACAATGTGATCATGGATG 59.906 38.462 12.26 0.00 34.19 3.51
4874 6151 4.866921 AGGAAAAACATAGCACGGAAAAC 58.133 39.130 0.00 0.00 0.00 2.43
4888 6165 5.634859 CACACTATCATTGCCAAGGAAAAAC 59.365 40.000 0.00 0.00 0.00 2.43
4894 6171 6.319658 AGTTATTCACACTATCATTGCCAAGG 59.680 38.462 0.00 0.00 0.00 3.61
4895 6172 7.066163 TCAGTTATTCACACTATCATTGCCAAG 59.934 37.037 0.00 0.00 0.00 3.61
4915 6192 0.394938 TGGCCGCTCTTGTTCAGTTA 59.605 50.000 0.00 0.00 0.00 2.24
4928 6205 1.017177 TAACACTCAACGATGGCCGC 61.017 55.000 0.00 0.00 43.32 6.53
4941 6218 0.964358 CGGACGGAGGGAGTAACACT 60.964 60.000 0.00 0.00 33.40 3.55
4942 6219 1.509923 CGGACGGAGGGAGTAACAC 59.490 63.158 0.00 0.00 0.00 3.32
4946 6223 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4947 6224 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4948 6225 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4949 6226 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4950 6227 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4951 6228 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4952 6229 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4953 6230 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4954 6231 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4955 6232 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
4956 6233 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
4957 6234 8.044309 TCTATTTCAATGACAAGTATTTCCGGA 58.956 33.333 0.00 0.00 0.00 5.14
4958 6235 8.208718 TCTATTTCAATGACAAGTATTTCCGG 57.791 34.615 0.00 0.00 0.00 5.14
4959 6236 9.655769 CATCTATTTCAATGACAAGTATTTCCG 57.344 33.333 0.00 0.00 0.00 4.30
5002 6279 9.553064 GTCATCAAAATGGATGTATCTAGAACT 57.447 33.333 0.00 0.00 44.00 3.01
5003 6280 9.330063 TGTCATCAAAATGGATGTATCTAGAAC 57.670 33.333 0.00 0.00 44.00 3.01
5004 6281 9.904198 TTGTCATCAAAATGGATGTATCTAGAA 57.096 29.630 0.00 0.00 44.00 2.10
5005 6282 9.551734 CTTGTCATCAAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 44.00 2.43
5006 6283 9.334947 ACTTGTCATCAAAATGGATGTATCTAG 57.665 33.333 0.00 0.00 44.00 2.43
5008 6285 9.857656 ATACTTGTCATCAAAATGGATGTATCT 57.142 29.630 0.00 0.00 44.00 1.98
5014 6291 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
5015 6292 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
5016 6293 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
5017 6294 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
5018 6295 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
5019 6296 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
5020 6297 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
5021 6298 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
5022 6299 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
5023 6300 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
5024 6301 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
5025 6302 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
5026 6303 4.320870 TCCTCCGTCCAAAAATACTTGTC 58.679 43.478 0.00 0.00 0.00 3.18
5027 6304 4.360951 TCCTCCGTCCAAAAATACTTGT 57.639 40.909 0.00 0.00 0.00 3.16
5028 6305 4.760204 ACTTCCTCCGTCCAAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
5029 6306 4.981812 ACTTCCTCCGTCCAAAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
5030 6307 4.635699 ACTTCCTCCGTCCAAAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
5031 6308 5.936372 ACTTACTTCCTCCGTCCAAAAATAC 59.064 40.000 0.00 0.00 0.00 1.89
5032 6309 6.117975 ACTTACTTCCTCCGTCCAAAAATA 57.882 37.500 0.00 0.00 0.00 1.40
5033 6310 4.981812 ACTTACTTCCTCCGTCCAAAAAT 58.018 39.130 0.00 0.00 0.00 1.82
5034 6311 4.426736 ACTTACTTCCTCCGTCCAAAAA 57.573 40.909 0.00 0.00 0.00 1.94
5035 6312 4.426736 AACTTACTTCCTCCGTCCAAAA 57.573 40.909 0.00 0.00 0.00 2.44
5036 6313 4.141665 TGAAACTTACTTCCTCCGTCCAAA 60.142 41.667 0.00 0.00 0.00 3.28
5037 6314 3.388676 TGAAACTTACTTCCTCCGTCCAA 59.611 43.478 0.00 0.00 0.00 3.53
5038 6315 2.967201 TGAAACTTACTTCCTCCGTCCA 59.033 45.455 0.00 0.00 0.00 4.02
5039 6316 3.257624 TCTGAAACTTACTTCCTCCGTCC 59.742 47.826 0.00 0.00 0.00 4.79
5040 6317 4.516365 TCTGAAACTTACTTCCTCCGTC 57.484 45.455 0.00 0.00 0.00 4.79
5041 6318 4.950205 TTCTGAAACTTACTTCCTCCGT 57.050 40.909 0.00 0.00 0.00 4.69
5042 6319 5.334182 GCTTTTCTGAAACTTACTTCCTCCG 60.334 44.000 1.58 0.00 0.00 4.63
5043 6320 5.765677 AGCTTTTCTGAAACTTACTTCCTCC 59.234 40.000 1.58 0.00 0.00 4.30
5044 6321 6.869315 AGCTTTTCTGAAACTTACTTCCTC 57.131 37.500 1.58 0.00 0.00 3.71
5045 6322 8.926092 AATAGCTTTTCTGAAACTTACTTCCT 57.074 30.769 1.58 0.00 0.00 3.36
5073 6350 8.795842 AAATACATTGCATCAAAATGGACATT 57.204 26.923 0.72 0.00 38.98 2.71
5084 6361 7.973388 GCTGTAACCTAAAAATACATTGCATCA 59.027 33.333 0.00 0.00 0.00 3.07
5110 6477 3.026630 TCACCACGCTCAAGTTAAGAG 57.973 47.619 0.00 0.00 36.21 2.85
5111 6478 3.325870 CATCACCACGCTCAAGTTAAGA 58.674 45.455 0.00 0.00 0.00 2.10
5117 7174 1.236616 TTGCCATCACCACGCTCAAG 61.237 55.000 0.00 0.00 0.00 3.02
5120 7177 0.179156 CAATTGCCATCACCACGCTC 60.179 55.000 0.00 0.00 0.00 5.03
5127 7184 5.637387 ACGTTAAATTTCCAATTGCCATCAC 59.363 36.000 0.00 0.00 0.00 3.06
5128 7185 5.788450 ACGTTAAATTTCCAATTGCCATCA 58.212 33.333 0.00 0.00 0.00 3.07
5129 7186 6.720012 AACGTTAAATTTCCAATTGCCATC 57.280 33.333 0.00 0.00 0.00 3.51
5131 7188 5.927115 GGTAACGTTAAATTTCCAATTGCCA 59.073 36.000 10.11 0.00 0.00 4.92
5133 7190 6.643360 ACAGGTAACGTTAAATTTCCAATTGC 59.357 34.615 10.11 0.00 46.39 3.56
5156 7213 5.924356 TGTTTCTCCTTGTTACTGATCACA 58.076 37.500 0.00 0.00 0.00 3.58
5165 7224 7.936847 TCTGAAGCTAATTGTTTCTCCTTGTTA 59.063 33.333 0.00 0.00 36.91 2.41
5240 7356 7.523293 TGATCATGGTATCAGTTTTTGTTGT 57.477 32.000 0.00 0.00 32.18 3.32
5257 7373 7.011202 CGGCCTCTGAATAATATCTTGATCATG 59.989 40.741 0.00 0.00 0.00 3.07
5268 7384 6.611613 ATTCATCTCGGCCTCTGAATAATA 57.388 37.500 13.86 0.00 36.76 0.98
5300 7416 9.890629 TCTTAATGTGCAGTCTCTTAATAATGT 57.109 29.630 0.00 0.00 0.00 2.71
5323 7439 4.916183 AGACTTTTAGCTCTTGGCATCTT 58.084 39.130 0.00 0.00 44.79 2.40
5329 7445 6.876257 ACTGAATGTAGACTTTTAGCTCTTGG 59.124 38.462 0.00 0.00 0.00 3.61
5335 7451 7.173390 ACCAGAAACTGAATGTAGACTTTTAGC 59.827 37.037 0.00 0.00 32.44 3.09
5452 7568 4.771577 AGTATTTGACCACCATTGCATTGA 59.228 37.500 10.14 0.00 0.00 2.57
5462 7578 5.637006 TGCATTACAAGTATTTGACCACC 57.363 39.130 4.81 0.00 37.73 4.61
5509 7625 8.078060 TGCTTCGATTTATATCCATCCTCATA 57.922 34.615 0.00 0.00 0.00 2.15
5552 7668 4.567959 GCAAATGGTAGACAAATGGCAATC 59.432 41.667 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.