Multiple sequence alignment - TraesCS3B01G585400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G585400 chr3B 100.000 6415 0 0 1 6415 812457029 812463443 0.000000e+00 11847
1 TraesCS3B01G585400 chr3B 85.714 854 77 23 18 842 200871707 200872544 0.000000e+00 859
2 TraesCS3B01G585400 chr3B 91.038 212 12 2 635 842 812412359 812412151 4.900000e-71 279
3 TraesCS3B01G585400 chr3D 91.475 2170 128 30 2115 4241 604685358 604687513 0.000000e+00 2929
4 TraesCS3B01G585400 chr3D 94.254 818 37 7 4713 5523 604687691 604688505 0.000000e+00 1242
5 TraesCS3B01G585400 chr3D 91.443 783 46 11 1338 2116 604684541 604685306 0.000000e+00 1055
6 TraesCS3B01G585400 chr3D 89.655 638 40 10 5557 6185 604688474 604689094 0.000000e+00 789
7 TraesCS3B01G585400 chr3D 87.671 511 22 22 844 1334 604683945 604684434 2.020000e-154 556
8 TraesCS3B01G585400 chr3D 90.330 424 27 6 5773 6185 604708451 604708871 1.570000e-150 544
9 TraesCS3B01G585400 chr3D 89.744 390 26 6 5773 6151 604743664 604743278 2.690000e-133 486
10 TraesCS3B01G585400 chr3D 93.966 232 12 2 6183 6413 604709395 604709625 3.680000e-92 350
11 TraesCS3B01G585400 chr3D 92.340 235 10 5 6187 6413 604689416 604689650 1.720000e-85 327
12 TraesCS3B01G585400 chr3A 92.464 2070 98 29 2115 4145 734839807 734841857 0.000000e+00 2905
13 TraesCS3B01G585400 chr3A 92.415 2070 103 28 2115 4145 734885187 734887241 0.000000e+00 2904
14 TraesCS3B01G585400 chr3A 93.390 1059 56 7 4161 5214 734842093 734843142 0.000000e+00 1555
15 TraesCS3B01G585400 chr3A 93.201 1059 58 7 4161 5214 734887477 734888526 0.000000e+00 1544
16 TraesCS3B01G585400 chr3A 93.139 787 45 8 1334 2116 734838974 734839755 0.000000e+00 1146
17 TraesCS3B01G585400 chr3A 92.164 587 30 6 5560 6132 734858798 734859382 0.000000e+00 815
18 TraesCS3B01G585400 chr3A 93.645 535 31 3 1585 2116 734884601 734885135 0.000000e+00 797
19 TraesCS3B01G585400 chr3A 91.312 587 35 6 5560 6132 734904225 734904809 0.000000e+00 787
20 TraesCS3B01G585400 chr3A 88.757 507 19 14 857 1335 734838366 734838862 2.580000e-163 586
21 TraesCS3B01G585400 chr3A 95.817 263 4 5 5251 5507 734851023 734851284 9.950000e-113 418
22 TraesCS3B01G585400 chr3A 95.057 263 6 5 5251 5507 734818463 734818724 2.150000e-109 407
23 TraesCS3B01G585400 chr3A 94.656 262 14 0 5924 6185 735359355 735359616 2.150000e-109 407
24 TraesCS3B01G585400 chr3A 94.340 265 4 6 5251 5507 734896435 734896696 4.660000e-106 396
25 TraesCS3B01G585400 chr3A 91.429 245 6 6 6183 6412 735359934 735360178 8.020000e-84 322
26 TraesCS3B01G585400 chr7D 91.058 1644 80 22 2570 4207 499627412 499625830 0.000000e+00 2159
27 TraesCS3B01G585400 chr7D 85.780 218 21 7 6203 6412 321047434 321047219 8.370000e-54 222
28 TraesCS3B01G585400 chr4B 89.557 1647 97 29 2570 4208 642737038 642738617 0.000000e+00 2019
29 TraesCS3B01G585400 chr4B 90.654 214 16 1 633 842 405279323 405279110 1.360000e-71 281
30 TraesCS3B01G585400 chr4B 86.559 186 19 5 5485 5667 92997155 92997337 3.920000e-47 200
31 TraesCS3B01G585400 chr7A 89.804 1530 87 23 2687 4208 109230796 109229328 0.000000e+00 1897
32 TraesCS3B01G585400 chr7A 89.536 1529 91 24 2687 4208 61493737 61492271 0.000000e+00 1873
33 TraesCS3B01G585400 chr7A 87.895 190 15 5 5491 5680 61022991 61023172 3.890000e-52 217
34 TraesCS3B01G585400 chr7A 86.413 184 17 7 5495 5671 666013612 666013794 1.820000e-45 195
35 TraesCS3B01G585400 chr7A 85.870 184 18 6 5491 5671 665996033 665996211 8.490000e-44 189
36 TraesCS3B01G585400 chr2B 87.081 1401 70 37 2570 3964 30335525 30334230 0.000000e+00 1482
37 TraesCS3B01G585400 chr2B 88.588 850 65 14 18 842 2540986 2541828 0.000000e+00 1003
38 TraesCS3B01G585400 chr2B 88.339 849 68 13 18 842 636412844 636413685 0.000000e+00 990
39 TraesCS3B01G585400 chr2B 94.848 330 13 1 3947 4272 30334048 30333719 4.440000e-141 512
40 TraesCS3B01G585400 chr2B 91.447 152 7 5 5522 5671 779633703 779633556 3.030000e-48 204
41 TraesCS3B01G585400 chr5A 83.849 1294 147 36 2838 4087 623024408 623023133 0.000000e+00 1175
42 TraesCS3B01G585400 chr5A 88.421 475 54 1 4725 5198 623022742 623022268 7.220000e-159 571
43 TraesCS3B01G585400 chr5A 79.751 642 98 25 1654 2269 623025738 623025103 2.750000e-118 436
44 TraesCS3B01G585400 chr5A 88.424 311 25 8 1025 1335 623026444 623026145 1.310000e-96 364
45 TraesCS3B01G585400 chr5D 83.769 1300 140 46 2838 4087 498732164 498730886 0.000000e+00 1166
46 TraesCS3B01G585400 chr5D 85.814 860 74 16 1 842 410301374 410302203 0.000000e+00 869
47 TraesCS3B01G585400 chr5D 85.674 712 90 9 4491 5198 498730683 498729980 0.000000e+00 739
48 TraesCS3B01G585400 chr5D 79.603 1108 139 54 1689 2769 498733451 498732404 0.000000e+00 713
49 TraesCS3B01G585400 chr5D 87.220 313 32 7 1025 1336 498734194 498733889 3.680000e-92 350
50 TraesCS3B01G585400 chr5B 83.564 1302 144 44 2838 4087 618284676 618283393 0.000000e+00 1155
51 TraesCS3B01G585400 chr5B 86.017 708 85 11 4495 5198 618283189 618282492 0.000000e+00 747
52 TraesCS3B01G585400 chr5B 79.397 1160 150 52 1654 2783 618286005 618284905 0.000000e+00 736
53 TraesCS3B01G585400 chr5B 95.305 213 10 0 1025 1237 618286920 618286708 7.970000e-89 339
54 TraesCS3B01G585400 chr5B 89.450 218 19 1 629 842 678577857 678577640 8.200000e-69 272
55 TraesCS3B01G585400 chr6B 92.105 798 56 4 51 842 662062568 662061772 0.000000e+00 1118
56 TraesCS3B01G585400 chr6B 87.975 632 52 21 18 627 320736690 320736061 0.000000e+00 725
57 TraesCS3B01G585400 chr6B 87.472 439 52 3 2302 2739 3551031 3551467 2.670000e-138 503
58 TraesCS3B01G585400 chr6B 87.302 441 53 3 2302 2741 3541300 3541738 9.600000e-138 501
59 TraesCS3B01G585400 chr4D 89.290 859 67 12 1 848 309905964 309905120 0.000000e+00 1053
60 TraesCS3B01G585400 chr4D 90.313 351 28 3 497 842 490105054 490104705 7.580000e-124 455
61 TraesCS3B01G585400 chr4D 89.401 217 19 1 630 842 309918844 309919060 2.950000e-68 270
62 TraesCS3B01G585400 chr7B 87.746 865 71 17 14 850 683209237 683208380 0.000000e+00 977
63 TraesCS3B01G585400 chr7B 87.676 852 69 12 18 842 708573464 708572622 0.000000e+00 959
64 TraesCS3B01G585400 chr7B 85.531 857 75 26 18 842 619057179 619058018 0.000000e+00 850
65 TraesCS3B01G585400 chr7B 87.640 445 50 5 2294 2737 61808338 61807898 4.440000e-141 512
66 TraesCS3B01G585400 chr2A 88.187 491 52 3 2306 2795 17648294 17647809 1.200000e-161 580
67 TraesCS3B01G585400 chr6D 88.008 492 51 5 2306 2795 7261898 7262383 5.580000e-160 575
68 TraesCS3B01G585400 chrUn 90.657 396 21 11 2214 2604 480790319 480790703 4.440000e-141 512
69 TraesCS3B01G585400 chrUn 87.571 177 13 7 5500 5674 132257976 132258145 5.070000e-46 196
70 TraesCS3B01G585400 chr1D 86.486 185 15 7 5491 5672 38417750 38417573 1.820000e-45 195
71 TraesCS3B01G585400 chr2D 84.375 192 17 9 5491 5671 19525934 19525745 6.610000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G585400 chr3B 812457029 812463443 6414 False 11847.000000 11847 100.000000 1 6415 1 chr3B.!!$F2 6414
1 TraesCS3B01G585400 chr3B 200871707 200872544 837 False 859.000000 859 85.714000 18 842 1 chr3B.!!$F1 824
2 TraesCS3B01G585400 chr3D 604683945 604689650 5705 False 1149.666667 2929 91.139667 844 6413 6 chr3D.!!$F1 5569
3 TraesCS3B01G585400 chr3D 604708451 604709625 1174 False 447.000000 544 92.148000 5773 6413 2 chr3D.!!$F2 640
4 TraesCS3B01G585400 chr3A 734884601 734888526 3925 False 1748.333333 2904 93.087000 1585 5214 3 chr3A.!!$F7 3629
5 TraesCS3B01G585400 chr3A 734838366 734843142 4776 False 1548.000000 2905 91.937500 857 5214 4 chr3A.!!$F6 4357
6 TraesCS3B01G585400 chr3A 734858798 734859382 584 False 815.000000 815 92.164000 5560 6132 1 chr3A.!!$F3 572
7 TraesCS3B01G585400 chr3A 734904225 734904809 584 False 787.000000 787 91.312000 5560 6132 1 chr3A.!!$F5 572
8 TraesCS3B01G585400 chr3A 735359355 735360178 823 False 364.500000 407 93.042500 5924 6412 2 chr3A.!!$F8 488
9 TraesCS3B01G585400 chr7D 499625830 499627412 1582 True 2159.000000 2159 91.058000 2570 4207 1 chr7D.!!$R2 1637
10 TraesCS3B01G585400 chr4B 642737038 642738617 1579 False 2019.000000 2019 89.557000 2570 4208 1 chr4B.!!$F2 1638
11 TraesCS3B01G585400 chr7A 109229328 109230796 1468 True 1897.000000 1897 89.804000 2687 4208 1 chr7A.!!$R2 1521
12 TraesCS3B01G585400 chr7A 61492271 61493737 1466 True 1873.000000 1873 89.536000 2687 4208 1 chr7A.!!$R1 1521
13 TraesCS3B01G585400 chr2B 2540986 2541828 842 False 1003.000000 1003 88.588000 18 842 1 chr2B.!!$F1 824
14 TraesCS3B01G585400 chr2B 30333719 30335525 1806 True 997.000000 1482 90.964500 2570 4272 2 chr2B.!!$R2 1702
15 TraesCS3B01G585400 chr2B 636412844 636413685 841 False 990.000000 990 88.339000 18 842 1 chr2B.!!$F2 824
16 TraesCS3B01G585400 chr5A 623022268 623026444 4176 True 636.500000 1175 85.111250 1025 5198 4 chr5A.!!$R1 4173
17 TraesCS3B01G585400 chr5D 410301374 410302203 829 False 869.000000 869 85.814000 1 842 1 chr5D.!!$F1 841
18 TraesCS3B01G585400 chr5D 498729980 498734194 4214 True 742.000000 1166 84.066500 1025 5198 4 chr5D.!!$R1 4173
19 TraesCS3B01G585400 chr5B 618282492 618286920 4428 True 744.250000 1155 86.070750 1025 5198 4 chr5B.!!$R2 4173
20 TraesCS3B01G585400 chr6B 662061772 662062568 796 True 1118.000000 1118 92.105000 51 842 1 chr6B.!!$R2 791
21 TraesCS3B01G585400 chr6B 320736061 320736690 629 True 725.000000 725 87.975000 18 627 1 chr6B.!!$R1 609
22 TraesCS3B01G585400 chr4D 309905120 309905964 844 True 1053.000000 1053 89.290000 1 848 1 chr4D.!!$R1 847
23 TraesCS3B01G585400 chr7B 683208380 683209237 857 True 977.000000 977 87.746000 14 850 1 chr7B.!!$R2 836
24 TraesCS3B01G585400 chr7B 708572622 708573464 842 True 959.000000 959 87.676000 18 842 1 chr7B.!!$R3 824
25 TraesCS3B01G585400 chr7B 619057179 619058018 839 False 850.000000 850 85.531000 18 842 1 chr7B.!!$F1 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 799 0.027979 CTGCCACTTGTCACGTTGTG 59.972 55.000 0.00 0.0 34.45 3.33 F
1007 1086 0.248843 CTTGCTCACCTCAGTCCTCC 59.751 60.000 0.00 0.0 0.00 4.30 F
1423 1876 0.603707 CCTGCTTGAAACCTCGCTGA 60.604 55.000 0.00 0.0 0.00 4.26 F
1845 2325 1.153823 GCACGTCCACATAGCGTCT 60.154 57.895 0.00 0.0 36.67 4.18 F
2861 3624 1.795286 CTCAGGCTGACGACTTTCAAC 59.205 52.381 14.43 0.0 0.00 3.18 F
3578 4394 0.250038 TCTTGCTCTCACTGTGCACC 60.250 55.000 15.69 0.0 43.67 5.01 F
4240 5508 1.200948 GGTTCTGGAGCAGTCAATTGC 59.799 52.381 0.00 0.0 44.41 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2853 1.418637 ACCAGCAGACCGGAACTAAAA 59.581 47.619 9.46 0.0 0.00 1.52 R
2844 3606 1.222115 GCGTTGAAAGTCGTCAGCCT 61.222 55.000 0.00 0.0 0.00 4.58 R
2852 3615 1.576421 CCTGCCTGCGTTGAAAGTC 59.424 57.895 0.00 0.0 0.00 3.01 R
3555 4358 1.265365 GCACAGTGAGAGCAAGAAACC 59.735 52.381 4.15 0.0 33.66 3.27 R
4807 6092 1.650528 CCTCTGAAGGAGAAGGGTGT 58.349 55.000 0.00 0.0 46.67 4.16 R
5039 6325 1.141881 CGGTGTCTTCATCTCCGGG 59.858 63.158 0.00 0.0 38.00 5.73 R
6001 7306 1.215423 GGGGGCTCTAACACCATGATT 59.785 52.381 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.973657 CTGACAGAAGCAAAAACAGCAT 58.026 40.909 0.00 0.00 0.00 3.79
28 29 7.156673 ACAGAAGCAAAAACAGCATCATAAAT 58.843 30.769 0.00 0.00 32.53 1.40
157 163 2.573462 TGCACAAGCTAGGAATCTCCTT 59.427 45.455 0.00 0.00 42.81 3.36
240 246 1.614525 TCAGATCTGTGGCCAGGCT 60.615 57.895 21.92 0.00 39.31 4.58
336 342 2.897326 GCACACCCAAAGAAACCCTAAT 59.103 45.455 0.00 0.00 0.00 1.73
376 382 2.667536 CCTGCACTTCGCTGCTGT 60.668 61.111 0.00 0.00 43.06 4.40
435 441 2.410322 AAACCATGGCCACGAGCTGA 62.410 55.000 8.16 0.00 43.05 4.26
543 619 1.705745 GGGGAACAGGAAGGAGAAAGT 59.294 52.381 0.00 0.00 0.00 2.66
553 629 3.498661 GGAAGGAGAAAGTGGGACAACAT 60.499 47.826 0.00 0.00 44.16 2.71
569 645 0.838987 ACATCGGTAGGTGTGGGGTT 60.839 55.000 0.00 0.00 0.00 4.11
573 649 2.761160 GTAGGTGTGGGGTTGGGG 59.239 66.667 0.00 0.00 0.00 4.96
574 650 2.533232 TAGGTGTGGGGTTGGGGG 60.533 66.667 0.00 0.00 0.00 5.40
575 651 3.130153 TAGGTGTGGGGTTGGGGGA 62.130 63.158 0.00 0.00 0.00 4.81
576 652 2.656269 TAGGTGTGGGGTTGGGGGAA 62.656 60.000 0.00 0.00 0.00 3.97
577 653 2.203582 GTGTGGGGTTGGGGGAAC 60.204 66.667 0.00 0.00 0.00 3.62
578 654 3.892162 TGTGGGGTTGGGGGAACG 61.892 66.667 0.00 0.00 35.12 3.95
579 655 4.671590 GTGGGGTTGGGGGAACGG 62.672 72.222 0.00 0.00 35.12 4.44
582 658 3.582358 GGGTTGGGGGAACGGGAA 61.582 66.667 0.00 0.00 35.12 3.97
583 659 2.282674 GGTTGGGGGAACGGGAAC 60.283 66.667 0.00 0.00 35.12 3.62
584 660 2.516909 GTTGGGGGAACGGGAACA 59.483 61.111 0.00 0.00 0.00 3.18
585 661 1.152715 GTTGGGGGAACGGGAACAA 60.153 57.895 0.00 0.00 0.00 2.83
586 662 1.152715 TTGGGGGAACGGGAACAAC 60.153 57.895 0.00 0.00 0.00 3.32
587 663 1.934459 TTGGGGGAACGGGAACAACA 61.934 55.000 0.00 0.00 0.00 3.33
588 664 1.152715 GGGGGAACGGGAACAACAA 60.153 57.895 0.00 0.00 0.00 2.83
589 665 1.457823 GGGGGAACGGGAACAACAAC 61.458 60.000 0.00 0.00 0.00 3.32
590 666 1.650363 GGGAACGGGAACAACAACG 59.350 57.895 0.00 0.00 0.00 4.10
591 667 1.650363 GGAACGGGAACAACAACGG 59.350 57.895 0.00 0.00 0.00 4.44
592 668 1.096967 GGAACGGGAACAACAACGGT 61.097 55.000 0.00 0.00 0.00 4.83
593 669 1.580815 GAACGGGAACAACAACGGTA 58.419 50.000 0.00 0.00 0.00 4.02
594 670 1.528161 GAACGGGAACAACAACGGTAG 59.472 52.381 0.00 0.00 0.00 3.18
595 671 0.249996 ACGGGAACAACAACGGTAGG 60.250 55.000 0.00 0.00 0.00 3.18
596 672 0.249996 CGGGAACAACAACGGTAGGT 60.250 55.000 0.00 0.00 0.00 3.08
597 673 1.232119 GGGAACAACAACGGTAGGTG 58.768 55.000 0.00 0.00 41.87 4.00
603 679 3.153825 CAACGGTAGGTGTGGGGT 58.846 61.111 0.00 0.00 0.00 4.95
604 680 1.302192 CAACGGTAGGTGTGGGGTG 60.302 63.158 0.00 0.00 0.00 4.61
605 681 2.522367 AACGGTAGGTGTGGGGTGG 61.522 63.158 0.00 0.00 0.00 4.61
606 682 3.712907 CGGTAGGTGTGGGGTGGG 61.713 72.222 0.00 0.00 0.00 4.61
607 683 3.335729 GGTAGGTGTGGGGTGGGG 61.336 72.222 0.00 0.00 0.00 4.96
608 684 2.204029 GTAGGTGTGGGGTGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
609 685 1.848895 GTAGGTGTGGGGTGGGGAA 60.849 63.158 0.00 0.00 0.00 3.97
610 686 1.848895 TAGGTGTGGGGTGGGGAAC 60.849 63.158 0.00 0.00 0.00 3.62
611 687 2.639673 TAGGTGTGGGGTGGGGAACA 62.640 60.000 0.00 0.00 0.00 3.18
612 688 2.115266 GTGTGGGGTGGGGAACAG 59.885 66.667 0.00 0.00 0.00 3.16
613 689 3.182263 TGTGGGGTGGGGAACAGG 61.182 66.667 0.00 0.00 0.00 4.00
614 690 2.856988 GTGGGGTGGGGAACAGGA 60.857 66.667 0.00 0.00 0.00 3.86
615 691 2.856988 TGGGGTGGGGAACAGGAC 60.857 66.667 0.00 0.00 0.00 3.85
616 692 3.658422 GGGGTGGGGAACAGGACC 61.658 72.222 0.00 0.00 0.00 4.46
617 693 2.856988 GGGTGGGGAACAGGACCA 60.857 66.667 0.00 0.00 0.00 4.02
618 694 2.757077 GGTGGGGAACAGGACCAG 59.243 66.667 0.00 0.00 34.39 4.00
619 695 2.034221 GTGGGGAACAGGACCAGC 59.966 66.667 0.00 0.00 34.39 4.85
620 696 2.449518 TGGGGAACAGGACCAGCA 60.450 61.111 0.00 0.00 0.00 4.41
621 697 2.081787 TGGGGAACAGGACCAGCAA 61.082 57.895 0.00 0.00 0.00 3.91
622 698 1.603739 GGGGAACAGGACCAGCAAC 60.604 63.158 0.00 0.00 0.00 4.17
623 699 1.966451 GGGAACAGGACCAGCAACG 60.966 63.158 0.00 0.00 0.00 4.10
624 700 1.966451 GGAACAGGACCAGCAACGG 60.966 63.158 0.00 0.00 0.00 4.44
625 701 1.227853 GAACAGGACCAGCAACGGT 60.228 57.895 0.00 0.00 43.91 4.83
626 702 0.034337 GAACAGGACCAGCAACGGTA 59.966 55.000 0.00 0.00 40.22 4.02
627 703 0.470766 AACAGGACCAGCAACGGTAA 59.529 50.000 0.00 0.00 40.22 2.85
628 704 0.470766 ACAGGACCAGCAACGGTAAA 59.529 50.000 0.00 0.00 40.22 2.01
629 705 1.073284 ACAGGACCAGCAACGGTAAAT 59.927 47.619 0.00 0.00 40.22 1.40
630 706 2.303600 ACAGGACCAGCAACGGTAAATA 59.696 45.455 0.00 0.00 40.22 1.40
631 707 3.054655 ACAGGACCAGCAACGGTAAATAT 60.055 43.478 0.00 0.00 40.22 1.28
632 708 3.945285 CAGGACCAGCAACGGTAAATATT 59.055 43.478 0.00 0.00 40.22 1.28
633 709 3.945285 AGGACCAGCAACGGTAAATATTG 59.055 43.478 0.00 0.00 40.22 1.90
637 713 2.113910 GCAACGGTAAATATTGCGGG 57.886 50.000 0.00 0.00 39.36 6.13
638 714 1.402613 GCAACGGTAAATATTGCGGGT 59.597 47.619 0.00 0.00 39.36 5.28
639 715 2.159352 GCAACGGTAAATATTGCGGGTT 60.159 45.455 0.00 0.00 39.36 4.11
640 716 3.430931 CAACGGTAAATATTGCGGGTTG 58.569 45.455 7.75 7.75 0.00 3.77
641 717 2.988570 ACGGTAAATATTGCGGGTTGA 58.011 42.857 0.00 0.00 0.00 3.18
642 718 3.345414 ACGGTAAATATTGCGGGTTGAA 58.655 40.909 0.00 0.00 0.00 2.69
643 719 3.949113 ACGGTAAATATTGCGGGTTGAAT 59.051 39.130 0.00 0.00 0.00 2.57
644 720 4.201970 ACGGTAAATATTGCGGGTTGAATG 60.202 41.667 0.00 0.00 0.00 2.67
645 721 4.616953 GGTAAATATTGCGGGTTGAATGG 58.383 43.478 0.00 0.00 0.00 3.16
646 722 4.339814 GGTAAATATTGCGGGTTGAATGGA 59.660 41.667 0.00 0.00 0.00 3.41
647 723 4.654091 AAATATTGCGGGTTGAATGGAG 57.346 40.909 0.00 0.00 0.00 3.86
648 724 2.799126 TATTGCGGGTTGAATGGAGT 57.201 45.000 0.00 0.00 0.00 3.85
649 725 1.463674 ATTGCGGGTTGAATGGAGTC 58.536 50.000 0.00 0.00 0.00 3.36
650 726 0.109532 TTGCGGGTTGAATGGAGTCA 59.890 50.000 0.00 0.00 0.00 3.41
651 727 0.109532 TGCGGGTTGAATGGAGTCAA 59.890 50.000 0.00 0.00 35.14 3.18
656 732 1.234821 GTTGAATGGAGTCAACGGCA 58.765 50.000 4.38 0.00 45.71 5.69
657 733 1.197721 GTTGAATGGAGTCAACGGCAG 59.802 52.381 4.38 0.00 45.71 4.85
658 734 0.321564 TGAATGGAGTCAACGGCAGG 60.322 55.000 0.00 0.00 0.00 4.85
659 735 1.002134 AATGGAGTCAACGGCAGGG 60.002 57.895 0.00 0.00 0.00 4.45
660 736 2.484287 AATGGAGTCAACGGCAGGGG 62.484 60.000 0.00 0.00 0.00 4.79
671 747 3.233231 GCAGGGGCCTTTGTGCAA 61.233 61.111 0.84 0.00 35.91 4.08
672 748 2.806009 GCAGGGGCCTTTGTGCAAA 61.806 57.895 0.84 0.00 35.91 3.68
673 749 1.828768 CAGGGGCCTTTGTGCAAAA 59.171 52.632 0.84 0.00 0.00 2.44
674 750 0.397564 CAGGGGCCTTTGTGCAAAAT 59.602 50.000 0.84 0.00 0.00 1.82
675 751 1.139439 AGGGGCCTTTGTGCAAAATT 58.861 45.000 0.84 0.00 0.00 1.82
676 752 1.202794 AGGGGCCTTTGTGCAAAATTG 60.203 47.619 0.84 0.00 0.00 2.32
677 753 1.237533 GGGCCTTTGTGCAAAATTGG 58.762 50.000 0.84 5.15 0.00 3.16
678 754 0.592637 GGCCTTTGTGCAAAATTGGC 59.407 50.000 20.03 20.03 38.00 4.52
679 755 1.307097 GCCTTTGTGCAAAATTGGCA 58.693 45.000 22.10 0.00 38.36 4.92
680 756 1.264826 GCCTTTGTGCAAAATTGGCAG 59.735 47.619 22.10 4.22 42.85 4.85
681 757 2.836262 CCTTTGTGCAAAATTGGCAGA 58.164 42.857 0.00 0.00 42.85 4.26
682 758 2.803956 CCTTTGTGCAAAATTGGCAGAG 59.196 45.455 0.00 0.00 42.85 3.35
683 759 1.868469 TTGTGCAAAATTGGCAGAGC 58.132 45.000 0.00 0.00 42.85 4.09
684 760 1.042229 TGTGCAAAATTGGCAGAGCT 58.958 45.000 0.00 0.00 42.85 4.09
685 761 1.269883 TGTGCAAAATTGGCAGAGCTG 60.270 47.619 0.00 0.00 42.85 4.24
686 762 1.000060 GTGCAAAATTGGCAGAGCTGA 60.000 47.619 0.00 0.00 42.85 4.26
687 763 1.000060 TGCAAAATTGGCAGAGCTGAC 60.000 47.619 0.85 0.00 39.62 3.51
688 764 1.670967 GCAAAATTGGCAGAGCTGACC 60.671 52.381 0.03 2.80 37.98 4.02
689 765 0.883833 AAAATTGGCAGAGCTGACCG 59.116 50.000 0.03 0.00 37.98 4.79
690 766 0.962356 AAATTGGCAGAGCTGACCGG 60.962 55.000 0.00 0.00 37.98 5.28
691 767 2.129555 AATTGGCAGAGCTGACCGGT 62.130 55.000 6.92 6.92 37.98 5.28
692 768 2.527951 ATTGGCAGAGCTGACCGGTC 62.528 60.000 28.17 28.17 37.98 4.79
693 769 4.459089 GGCAGAGCTGACCGGTCC 62.459 72.222 31.19 17.09 41.03 4.46
694 770 3.695606 GCAGAGCTGACCGGTCCA 61.696 66.667 31.19 17.90 41.03 4.02
695 771 3.023949 GCAGAGCTGACCGGTCCAT 62.024 63.158 31.19 17.08 41.03 3.41
696 772 1.142748 CAGAGCTGACCGGTCCATC 59.857 63.158 31.19 23.82 41.03 3.51
697 773 2.060980 AGAGCTGACCGGTCCATCC 61.061 63.158 31.19 17.44 41.03 3.51
698 774 2.039624 AGCTGACCGGTCCATCCT 59.960 61.111 31.19 18.02 0.00 3.24
699 775 2.022240 GAGCTGACCGGTCCATCCTC 62.022 65.000 31.19 23.72 34.06 3.71
700 776 2.060980 GCTGACCGGTCCATCCTCT 61.061 63.158 31.19 0.00 0.00 3.69
701 777 1.819229 CTGACCGGTCCATCCTCTG 59.181 63.158 31.19 5.92 0.00 3.35
710 786 4.950479 CATCCTCTGGACTGCCAC 57.050 61.111 0.00 0.00 39.92 5.01
711 787 2.294890 CATCCTCTGGACTGCCACT 58.705 57.895 0.00 0.00 39.92 4.00
712 788 0.617413 CATCCTCTGGACTGCCACTT 59.383 55.000 0.00 0.00 39.92 3.16
713 789 0.617413 ATCCTCTGGACTGCCACTTG 59.383 55.000 0.00 0.00 39.92 3.16
714 790 0.764369 TCCTCTGGACTGCCACTTGT 60.764 55.000 0.00 0.00 39.92 3.16
715 791 0.321122 CCTCTGGACTGCCACTTGTC 60.321 60.000 0.00 0.00 39.92 3.18
716 792 0.394192 CTCTGGACTGCCACTTGTCA 59.606 55.000 0.00 0.00 39.92 3.58
717 793 0.106708 TCTGGACTGCCACTTGTCAC 59.893 55.000 0.00 0.00 39.92 3.67
718 794 1.224069 CTGGACTGCCACTTGTCACG 61.224 60.000 0.00 0.00 39.92 4.35
719 795 1.227556 GGACTGCCACTTGTCACGT 60.228 57.895 0.00 0.00 35.11 4.49
720 796 0.814010 GGACTGCCACTTGTCACGTT 60.814 55.000 0.00 0.00 35.11 3.99
721 797 0.304705 GACTGCCACTTGTCACGTTG 59.695 55.000 0.00 0.00 33.75 4.10
722 798 0.392461 ACTGCCACTTGTCACGTTGT 60.392 50.000 0.00 0.00 0.00 3.32
723 799 0.027979 CTGCCACTTGTCACGTTGTG 59.972 55.000 0.00 0.00 34.45 3.33
724 800 0.391793 TGCCACTTGTCACGTTGTGA 60.392 50.000 0.00 0.00 40.50 3.58
725 801 0.304705 GCCACTTGTCACGTTGTGAG 59.695 55.000 0.00 0.00 43.57 3.51
726 802 1.651987 CCACTTGTCACGTTGTGAGT 58.348 50.000 0.00 0.00 43.57 3.41
727 803 1.327460 CCACTTGTCACGTTGTGAGTG 59.673 52.381 0.00 5.52 43.57 3.51
728 804 1.327460 CACTTGTCACGTTGTGAGTGG 59.673 52.381 0.00 0.00 43.57 4.00
729 805 1.206132 ACTTGTCACGTTGTGAGTGGA 59.794 47.619 0.00 0.00 43.57 4.02
730 806 2.158957 ACTTGTCACGTTGTGAGTGGAT 60.159 45.455 0.00 0.00 43.57 3.41
731 807 1.864565 TGTCACGTTGTGAGTGGATG 58.135 50.000 0.00 0.00 43.57 3.51
732 808 1.138069 TGTCACGTTGTGAGTGGATGT 59.862 47.619 0.00 0.00 43.57 3.06
733 809 1.526887 GTCACGTTGTGAGTGGATGTG 59.473 52.381 0.00 0.00 43.57 3.21
734 810 0.867746 CACGTTGTGAGTGGATGTGG 59.132 55.000 0.00 0.00 35.23 4.17
735 811 0.756294 ACGTTGTGAGTGGATGTGGA 59.244 50.000 0.00 0.00 0.00 4.02
736 812 1.148310 CGTTGTGAGTGGATGTGGAC 58.852 55.000 0.00 0.00 0.00 4.02
737 813 1.523758 GTTGTGAGTGGATGTGGACC 58.476 55.000 0.00 0.00 0.00 4.46
738 814 1.135960 TTGTGAGTGGATGTGGACCA 58.864 50.000 0.00 0.00 34.84 4.02
739 815 1.135960 TGTGAGTGGATGTGGACCAA 58.864 50.000 0.00 0.00 39.22 3.67
740 816 1.492599 TGTGAGTGGATGTGGACCAAA 59.507 47.619 0.00 0.00 39.22 3.28
741 817 2.092158 TGTGAGTGGATGTGGACCAAAA 60.092 45.455 0.00 0.00 39.22 2.44
742 818 2.293399 GTGAGTGGATGTGGACCAAAAC 59.707 50.000 0.00 0.00 39.22 2.43
743 819 2.092158 TGAGTGGATGTGGACCAAAACA 60.092 45.455 0.00 0.00 39.22 2.83
744 820 3.157087 GAGTGGATGTGGACCAAAACAT 58.843 45.455 0.00 0.00 39.69 2.71
751 827 5.902613 ATGTGGACCAAAACATCACATAG 57.097 39.130 0.00 0.00 44.22 2.23
752 828 4.979335 TGTGGACCAAAACATCACATAGA 58.021 39.130 0.00 0.00 34.01 1.98
753 829 5.003160 TGTGGACCAAAACATCACATAGAG 58.997 41.667 0.00 0.00 34.01 2.43
754 830 5.003804 GTGGACCAAAACATCACATAGAGT 58.996 41.667 0.00 0.00 0.00 3.24
769 845 7.573916 CACATAGAGTGTCAAGTTGTAAGAG 57.426 40.000 2.11 0.00 43.40 2.85
770 846 7.148641 CACATAGAGTGTCAAGTTGTAAGAGT 58.851 38.462 2.11 0.00 43.40 3.24
771 847 7.327275 CACATAGAGTGTCAAGTTGTAAGAGTC 59.673 40.741 2.11 0.00 43.40 3.36
772 848 5.203060 AGAGTGTCAAGTTGTAAGAGTCC 57.797 43.478 2.11 0.00 0.00 3.85
773 849 4.896482 AGAGTGTCAAGTTGTAAGAGTCCT 59.104 41.667 2.11 0.00 0.00 3.85
774 850 5.010213 AGAGTGTCAAGTTGTAAGAGTCCTC 59.990 44.000 2.11 0.00 0.00 3.71
775 851 4.649674 AGTGTCAAGTTGTAAGAGTCCTCA 59.350 41.667 2.11 0.00 0.00 3.86
776 852 5.128827 AGTGTCAAGTTGTAAGAGTCCTCAA 59.871 40.000 2.11 0.00 0.00 3.02
777 853 5.992217 GTGTCAAGTTGTAAGAGTCCTCAAT 59.008 40.000 2.11 0.00 0.00 2.57
778 854 7.015292 AGTGTCAAGTTGTAAGAGTCCTCAATA 59.985 37.037 2.11 0.00 0.00 1.90
779 855 7.656137 GTGTCAAGTTGTAAGAGTCCTCAATAA 59.344 37.037 2.11 0.00 0.00 1.40
780 856 7.656137 TGTCAAGTTGTAAGAGTCCTCAATAAC 59.344 37.037 2.11 0.32 0.00 1.89
781 857 7.656137 GTCAAGTTGTAAGAGTCCTCAATAACA 59.344 37.037 2.11 0.00 0.00 2.41
782 858 8.375506 TCAAGTTGTAAGAGTCCTCAATAACAT 58.624 33.333 2.11 0.00 0.00 2.71
783 859 9.003658 CAAGTTGTAAGAGTCCTCAATAACATT 57.996 33.333 0.00 0.00 0.00 2.71
784 860 9.574516 AAGTTGTAAGAGTCCTCAATAACATTT 57.425 29.630 0.00 0.00 0.00 2.32
785 861 9.574516 AGTTGTAAGAGTCCTCAATAACATTTT 57.425 29.630 0.00 0.00 0.00 1.82
786 862 9.612620 GTTGTAAGAGTCCTCAATAACATTTTG 57.387 33.333 0.00 0.00 0.00 2.44
787 863 8.918202 TGTAAGAGTCCTCAATAACATTTTGT 57.082 30.769 0.00 0.00 0.00 2.83
788 864 9.349713 TGTAAGAGTCCTCAATAACATTTTGTT 57.650 29.630 0.00 0.00 43.88 2.83
791 867 9.533253 AAGAGTCCTCAATAACATTTTGTTTTG 57.467 29.630 0.00 4.25 41.45 2.44
792 868 8.143835 AGAGTCCTCAATAACATTTTGTTTTGG 58.856 33.333 0.00 0.00 41.45 3.28
793 869 8.017418 AGTCCTCAATAACATTTTGTTTTGGA 57.983 30.769 0.00 0.00 41.45 3.53
794 870 7.926018 AGTCCTCAATAACATTTTGTTTTGGAC 59.074 33.333 11.18 11.18 41.45 4.02
795 871 7.926018 GTCCTCAATAACATTTTGTTTTGGACT 59.074 33.333 11.58 0.00 41.45 3.85
796 872 9.137459 TCCTCAATAACATTTTGTTTTGGACTA 57.863 29.630 0.00 0.00 41.45 2.59
797 873 9.757227 CCTCAATAACATTTTGTTTTGGACTAA 57.243 29.630 0.00 0.00 41.45 2.24
814 890 8.662781 TTGGACTAAAGTATCATATTCTGTGC 57.337 34.615 0.00 0.00 0.00 4.57
815 891 7.791029 TGGACTAAAGTATCATATTCTGTGCA 58.209 34.615 0.00 0.00 0.00 4.57
816 892 8.264347 TGGACTAAAGTATCATATTCTGTGCAA 58.736 33.333 0.00 0.00 0.00 4.08
817 893 8.768955 GGACTAAAGTATCATATTCTGTGCAAG 58.231 37.037 0.00 0.00 0.00 4.01
818 894 9.319143 GACTAAAGTATCATATTCTGTGCAAGT 57.681 33.333 0.00 0.00 0.00 3.16
819 895 9.672673 ACTAAAGTATCATATTCTGTGCAAGTT 57.327 29.630 0.00 0.00 0.00 2.66
822 898 7.928307 AGTATCATATTCTGTGCAAGTTTGT 57.072 32.000 0.00 0.00 0.00 2.83
823 899 7.755591 AGTATCATATTCTGTGCAAGTTTGTG 58.244 34.615 0.00 0.00 0.00 3.33
824 900 5.375417 TCATATTCTGTGCAAGTTTGTGG 57.625 39.130 0.00 0.00 0.00 4.17
825 901 5.069318 TCATATTCTGTGCAAGTTTGTGGA 58.931 37.500 0.00 0.00 0.00 4.02
826 902 5.711506 TCATATTCTGTGCAAGTTTGTGGAT 59.288 36.000 0.00 0.00 0.00 3.41
827 903 3.988379 TTCTGTGCAAGTTTGTGGATC 57.012 42.857 0.00 0.00 0.00 3.36
828 904 3.213206 TCTGTGCAAGTTTGTGGATCT 57.787 42.857 0.00 0.00 0.00 2.75
829 905 2.880268 TCTGTGCAAGTTTGTGGATCTG 59.120 45.455 0.00 0.00 0.00 2.90
830 906 1.955778 TGTGCAAGTTTGTGGATCTGG 59.044 47.619 0.00 0.00 0.00 3.86
831 907 1.270550 GTGCAAGTTTGTGGATCTGGG 59.729 52.381 0.00 0.00 0.00 4.45
832 908 0.890683 GCAAGTTTGTGGATCTGGGG 59.109 55.000 0.00 0.00 0.00 4.96
833 909 1.823250 GCAAGTTTGTGGATCTGGGGT 60.823 52.381 0.00 0.00 0.00 4.95
834 910 1.888512 CAAGTTTGTGGATCTGGGGTG 59.111 52.381 0.00 0.00 0.00 4.61
835 911 0.251341 AGTTTGTGGATCTGGGGTGC 60.251 55.000 0.00 0.00 0.00 5.01
836 912 0.251341 GTTTGTGGATCTGGGGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
837 913 1.004277 GTTTGTGGATCTGGGGTGCTA 59.996 52.381 0.00 0.00 0.00 3.49
838 914 1.595311 TTGTGGATCTGGGGTGCTAT 58.405 50.000 0.00 0.00 0.00 2.97
839 915 1.595311 TGTGGATCTGGGGTGCTATT 58.405 50.000 0.00 0.00 0.00 1.73
840 916 2.770447 TGTGGATCTGGGGTGCTATTA 58.230 47.619 0.00 0.00 0.00 0.98
841 917 2.438021 TGTGGATCTGGGGTGCTATTAC 59.562 50.000 0.00 0.00 0.00 1.89
842 918 2.706190 GTGGATCTGGGGTGCTATTACT 59.294 50.000 0.00 0.00 0.00 2.24
843 919 3.136626 GTGGATCTGGGGTGCTATTACTT 59.863 47.826 0.00 0.00 0.00 2.24
844 920 3.785887 TGGATCTGGGGTGCTATTACTTT 59.214 43.478 0.00 0.00 0.00 2.66
845 921 4.229582 TGGATCTGGGGTGCTATTACTTTT 59.770 41.667 0.00 0.00 0.00 2.27
846 922 5.201243 GGATCTGGGGTGCTATTACTTTTT 58.799 41.667 0.00 0.00 0.00 1.94
915 994 1.811679 GTCCTTAGCAGCCTCGTGC 60.812 63.158 0.00 0.00 44.35 5.34
953 1032 3.313524 GCCCCTGGCTTTGGGTTG 61.314 66.667 8.09 0.00 46.69 3.77
954 1033 2.604382 CCCCTGGCTTTGGGTTGG 60.604 66.667 9.28 0.00 43.09 3.77
955 1034 2.604382 CCCTGGCTTTGGGTTGGG 60.604 66.667 3.24 0.00 39.82 4.12
991 1070 0.601311 GAATCGCGATCTCCCCCTTG 60.601 60.000 23.92 0.00 0.00 3.61
997 1076 1.529309 GATCTCCCCCTTGCTCACC 59.471 63.158 0.00 0.00 0.00 4.02
998 1077 0.985490 GATCTCCCCCTTGCTCACCT 60.985 60.000 0.00 0.00 0.00 4.00
1000 1079 1.920325 CTCCCCCTTGCTCACCTCA 60.920 63.158 0.00 0.00 0.00 3.86
1001 1080 1.908340 CTCCCCCTTGCTCACCTCAG 61.908 65.000 0.00 0.00 0.00 3.35
1002 1081 2.227036 CCCCCTTGCTCACCTCAGT 61.227 63.158 0.00 0.00 0.00 3.41
1004 1083 1.298014 CCCTTGCTCACCTCAGTCC 59.702 63.158 0.00 0.00 0.00 3.85
1005 1084 1.197430 CCCTTGCTCACCTCAGTCCT 61.197 60.000 0.00 0.00 0.00 3.85
1007 1086 0.248843 CTTGCTCACCTCAGTCCTCC 59.751 60.000 0.00 0.00 0.00 4.30
1008 1087 1.536073 TTGCTCACCTCAGTCCTCCG 61.536 60.000 0.00 0.00 0.00 4.63
1010 1089 2.680352 TCACCTCAGTCCTCCGCC 60.680 66.667 0.00 0.00 0.00 6.13
1012 1091 4.316823 ACCTCAGTCCTCCGCCCA 62.317 66.667 0.00 0.00 0.00 5.36
1013 1092 3.775654 CCTCAGTCCTCCGCCCAC 61.776 72.222 0.00 0.00 0.00 4.61
1014 1093 3.775654 CTCAGTCCTCCGCCCACC 61.776 72.222 0.00 0.00 0.00 4.61
1032 1121 2.901840 CCCATCAATGGCGACGGG 60.902 66.667 3.33 0.00 46.70 5.28
1300 1406 2.125512 CCCTTTCCTCACGCTCGG 60.126 66.667 0.00 0.00 0.00 4.63
1415 1866 2.087646 GGATCAGGACCTGCTTGAAAC 58.912 52.381 17.33 0.00 36.10 2.78
1423 1876 0.603707 CCTGCTTGAAACCTCGCTGA 60.604 55.000 0.00 0.00 0.00 4.26
1431 1884 2.030893 TGAAACCTCGCTGAATTTGCAG 60.031 45.455 5.47 0.00 38.91 4.41
1518 1972 6.710295 TGTCTGTTAATGTTGTCTGCAGTTAT 59.290 34.615 14.67 0.00 0.00 1.89
1536 1990 9.848710 TGCAGTTATCATCTACTACTAGTACTT 57.151 33.333 0.00 0.00 0.00 2.24
1587 2047 5.438761 GGTGATGGACCAATACAAATAGC 57.561 43.478 0.00 0.00 45.34 2.97
1638 2110 5.243507 TGTGATGTAACACAAATGCAGGAAT 59.756 36.000 0.00 0.00 45.81 3.01
1640 2112 6.968904 GTGATGTAACACAAATGCAGGAATAG 59.031 38.462 0.00 0.00 40.11 1.73
1667 2141 5.413499 ACAAATTATTGTCTGCTTGGATGC 58.587 37.500 0.00 0.00 46.78 3.91
1686 2166 5.048364 GGATGCTAGTGTGATCTAATCGTCT 60.048 44.000 0.00 0.00 0.00 4.18
1722 2202 2.543578 GCAGGAGATTGCGTTGTCA 58.456 52.632 0.00 0.00 33.90 3.58
1845 2325 1.153823 GCACGTCCACATAGCGTCT 60.154 57.895 0.00 0.00 36.67 4.18
1969 2450 6.377327 AAACAGATGTGTGACTAAAACTGG 57.623 37.500 0.00 0.00 36.84 4.00
2044 2525 3.428870 CACCTCAGTTGTGTTTAGTAGCG 59.571 47.826 0.00 0.00 0.00 4.26
2154 2689 2.665777 CACCTCCGTGTGCTATTCG 58.334 57.895 0.00 0.00 35.10 3.34
2206 2742 3.821033 ACTGTCACCTAAAATTGTCCTGC 59.179 43.478 0.00 0.00 0.00 4.85
2269 2806 9.982651 TGTTCTTTATTATCTGGTGTATAGAGC 57.017 33.333 0.00 0.00 0.00 4.09
2270 2807 9.982651 GTTCTTTATTATCTGGTGTATAGAGCA 57.017 33.333 1.48 1.48 0.00 4.26
2361 2901 9.455847 GTTAATCTTTGCAATAAATCTGCTAGG 57.544 33.333 0.00 0.00 40.59 3.02
2362 2902 7.651027 AATCTTTGCAATAAATCTGCTAGGT 57.349 32.000 0.00 0.00 40.59 3.08
2528 3071 3.621268 TGATAGCGCTATCCAACACAAAC 59.379 43.478 40.44 21.69 40.84 2.93
2548 3091 7.352719 CAAACTGATTGTCCACTACTACTTC 57.647 40.000 0.00 0.00 34.16 3.01
2710 3261 4.737855 TCAATAGCAAGGTCTGTACTCC 57.262 45.455 0.00 0.00 0.00 3.85
2711 3262 3.130516 TCAATAGCAAGGTCTGTACTCCG 59.869 47.826 0.00 0.00 0.00 4.63
2720 3271 5.108187 AGGTCTGTACTCCGTACTGATAA 57.892 43.478 14.07 0.00 44.35 1.75
2724 3275 7.123847 AGGTCTGTACTCCGTACTGATAAATTT 59.876 37.037 14.07 0.00 44.35 1.82
2852 3615 5.837437 AGTTATAATTCTCTCAGGCTGACG 58.163 41.667 14.43 10.18 0.00 4.35
2854 3617 2.663826 AATTCTCTCAGGCTGACGAC 57.336 50.000 14.43 0.00 0.00 4.34
2861 3624 1.795286 CTCAGGCTGACGACTTTCAAC 59.205 52.381 14.43 0.00 0.00 3.18
3159 3923 9.121517 CATGATCTGTTTCATTTAACTTGTCAC 57.878 33.333 0.00 0.00 34.09 3.67
3177 3941 4.141959 TGTCACTGGATATTGCTCATCGAA 60.142 41.667 0.00 0.00 0.00 3.71
3185 3949 6.108687 GGATATTGCTCATCGAATCATGGTA 58.891 40.000 0.00 0.00 0.00 3.25
3188 3952 2.061773 GCTCATCGAATCATGGTACCG 58.938 52.381 7.57 0.00 0.00 4.02
3204 3968 4.074259 GGTACCGTTAACACCAATCCTTT 58.926 43.478 6.39 0.00 32.32 3.11
3207 3971 4.976864 ACCGTTAACACCAATCCTTTACT 58.023 39.130 6.39 0.00 0.00 2.24
3208 3972 6.112927 ACCGTTAACACCAATCCTTTACTA 57.887 37.500 6.39 0.00 0.00 1.82
3473 4262 9.899226 AAGCTGAAATCTGAATTGTAGTTTTAC 57.101 29.630 0.00 0.00 0.00 2.01
3506 4305 2.361119 GGACCCTCAAGTTTTGTGGTTC 59.639 50.000 8.56 4.61 41.53 3.62
3543 4346 7.534723 TCAAGTCTGTTGGTAGTTATACTGT 57.465 36.000 0.00 0.00 32.12 3.55
3544 4347 8.640063 TCAAGTCTGTTGGTAGTTATACTGTA 57.360 34.615 0.00 0.00 32.12 2.74
3549 4352 9.649167 GTCTGTTGGTAGTTATACTGTACAATT 57.351 33.333 0.00 0.00 32.12 2.32
3578 4394 0.250038 TCTTGCTCTCACTGTGCACC 60.250 55.000 15.69 0.00 43.67 5.01
3685 4503 2.693074 CCTTTGCCAGGTTAACTTGTGT 59.307 45.455 15.69 0.00 37.99 3.72
4215 5483 7.420002 TCATGATGAAAACATATTACTGCTGC 58.580 34.615 0.00 0.00 0.00 5.25
4217 5485 7.395190 TGATGAAAACATATTACTGCTGCTT 57.605 32.000 0.00 0.00 0.00 3.91
4240 5508 1.200948 GGTTCTGGAGCAGTCAATTGC 59.799 52.381 0.00 0.00 44.41 3.56
4466 5739 5.109210 TGGTTCGTGTGATTGATCTGATAC 58.891 41.667 0.00 0.00 0.00 2.24
4472 5745 7.267857 TCGTGTGATTGATCTGATACTCAAAT 58.732 34.615 0.00 0.00 35.20 2.32
4473 5746 7.436376 TCGTGTGATTGATCTGATACTCAAATC 59.564 37.037 0.00 0.00 35.20 2.17
4693 5978 7.148103 TGCGATTGATCTGATAATGAAACCAAA 60.148 33.333 0.00 0.00 0.00 3.28
4695 5980 7.859377 CGATTGATCTGATAATGAAACCAAAGG 59.141 37.037 0.00 0.00 0.00 3.11
4696 5981 8.827832 ATTGATCTGATAATGAAACCAAAGGA 57.172 30.769 0.00 0.00 0.00 3.36
4697 5982 7.630242 TGATCTGATAATGAAACCAAAGGAC 57.370 36.000 0.00 0.00 0.00 3.85
4698 5983 7.174413 TGATCTGATAATGAAACCAAAGGACA 58.826 34.615 0.00 0.00 0.00 4.02
4699 5984 7.337689 TGATCTGATAATGAAACCAAAGGACAG 59.662 37.037 0.00 0.00 0.00 3.51
4704 5989 2.374184 TGAAACCAAAGGACAGGTGTG 58.626 47.619 0.00 0.00 38.37 3.82
4705 5990 2.291282 TGAAACCAAAGGACAGGTGTGT 60.291 45.455 0.00 0.00 38.37 3.72
4706 5991 2.525105 AACCAAAGGACAGGTGTGTT 57.475 45.000 0.00 0.00 38.37 3.32
4707 5992 2.525105 ACCAAAGGACAGGTGTGTTT 57.475 45.000 0.00 0.00 36.88 2.83
4708 5993 2.099405 ACCAAAGGACAGGTGTGTTTG 58.901 47.619 7.25 7.25 36.88 2.93
4709 5994 2.291282 ACCAAAGGACAGGTGTGTTTGA 60.291 45.455 12.91 0.00 36.88 2.69
4710 5995 2.958355 CCAAAGGACAGGTGTGTTTGAT 59.042 45.455 12.91 0.00 36.88 2.57
4711 5996 3.004734 CCAAAGGACAGGTGTGTTTGATC 59.995 47.826 12.91 0.00 36.88 2.92
5057 6343 1.141881 CCCGGAGATGAAGACACCG 59.858 63.158 0.73 0.00 42.67 4.94
5434 6720 5.627499 TCATTTTCTGTAGTCCAATGCAC 57.373 39.130 0.00 0.00 0.00 4.57
5503 6794 9.247861 AGCAACACCAAAAATCTATCTATTTCT 57.752 29.630 0.00 0.00 0.00 2.52
5649 6943 0.252197 AGCCGTTAATCTGGTGGGAC 59.748 55.000 0.00 0.00 0.00 4.46
5665 6959 2.242708 TGGGACCAAATTATTAGGGCGT 59.757 45.455 0.00 0.00 0.00 5.68
5666 6960 3.458857 TGGGACCAAATTATTAGGGCGTA 59.541 43.478 0.00 0.00 0.00 4.42
5798 7092 4.020218 ACCTTAGGTTTTAGGTCCCGTAAC 60.020 45.833 0.00 0.00 40.78 2.50
5819 7113 7.167635 CGTAACCTATCCAATATATAAGCGCAG 59.832 40.741 11.47 0.00 0.00 5.18
5980 7285 2.100603 GCCTCGGTCTTCGTCTCG 59.899 66.667 0.00 0.00 40.32 4.04
6001 7306 4.344968 TCGCATTAAATCCTCCTCTGATCA 59.655 41.667 0.00 0.00 0.00 2.92
6027 7332 1.117150 GTGTTAGAGCCCCCGATGTA 58.883 55.000 0.00 0.00 0.00 2.29
6095 7400 4.020839 CAGGCAAGGATGTGAAGGAAAAAT 60.021 41.667 0.00 0.00 0.00 1.82
6142 7447 3.998913 TGTGGCCAACAATCTCAGATA 57.001 42.857 7.24 0.00 35.24 1.98
6350 8190 5.197451 TCATTAAATAGCCCCACGAATTGT 58.803 37.500 0.00 0.00 0.00 2.71
6413 8267 9.929180 GGTCTATCAGCAATAATACTATTGACA 57.071 33.333 8.08 0.00 44.99 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.607988 TTCTTTTGTTGACAGTTAGATTCAGTA 57.392 29.630 0.00 0.00 0.00 2.74
157 163 4.883585 GCATTTGATTCAGTGGATAGTGGA 59.116 41.667 0.00 0.00 0.00 4.02
240 246 1.202915 TCTTGTGCTTGGAATGGAGCA 60.203 47.619 0.00 0.00 45.91 4.26
296 302 4.082300 TGTGCATTGGTAGTTAGCAAATGG 60.082 41.667 7.73 3.17 45.38 3.16
336 342 6.068735 AGGTTAGATCTCTTTCTCTGGTAGGA 60.069 42.308 0.00 0.00 0.00 2.94
376 382 3.749064 GTCCGGCGCTGAGTCAGA 61.749 66.667 24.55 2.34 32.44 3.27
388 394 1.079127 ATTCTGGCAGTTCGTCCGG 60.079 57.895 15.27 0.00 0.00 5.14
435 441 4.696455 CTTTGAACCCTTGAACATTTGCT 58.304 39.130 0.00 0.00 0.00 3.91
543 619 0.611200 CACCTACCGATGTTGTCCCA 59.389 55.000 0.00 0.00 0.00 4.37
553 629 2.218454 CCAACCCCACACCTACCGA 61.218 63.158 0.00 0.00 0.00 4.69
569 645 1.934459 TTGTTGTTCCCGTTCCCCCA 61.934 55.000 0.00 0.00 0.00 4.96
573 649 1.096967 ACCGTTGTTGTTCCCGTTCC 61.097 55.000 0.00 0.00 0.00 3.62
574 650 1.528161 CTACCGTTGTTGTTCCCGTTC 59.472 52.381 0.00 0.00 0.00 3.95
575 651 1.585297 CTACCGTTGTTGTTCCCGTT 58.415 50.000 0.00 0.00 0.00 4.44
576 652 0.249996 CCTACCGTTGTTGTTCCCGT 60.250 55.000 0.00 0.00 0.00 5.28
577 653 0.249996 ACCTACCGTTGTTGTTCCCG 60.250 55.000 0.00 0.00 0.00 5.14
578 654 1.232119 CACCTACCGTTGTTGTTCCC 58.768 55.000 0.00 0.00 0.00 3.97
579 655 1.600485 CACACCTACCGTTGTTGTTCC 59.400 52.381 0.00 0.00 0.00 3.62
580 656 1.600485 CCACACCTACCGTTGTTGTTC 59.400 52.381 0.00 0.00 0.00 3.18
581 657 1.670791 CCACACCTACCGTTGTTGTT 58.329 50.000 0.00 0.00 0.00 2.83
582 658 0.179040 CCCACACCTACCGTTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
583 659 0.887387 CCCCACACCTACCGTTGTTG 60.887 60.000 0.00 0.00 0.00 3.33
584 660 1.347243 ACCCCACACCTACCGTTGTT 61.347 55.000 0.00 0.00 0.00 2.83
585 661 1.767268 ACCCCACACCTACCGTTGT 60.767 57.895 0.00 0.00 0.00 3.32
586 662 1.302192 CACCCCACACCTACCGTTG 60.302 63.158 0.00 0.00 0.00 4.10
587 663 2.522367 CCACCCCACACCTACCGTT 61.522 63.158 0.00 0.00 0.00 4.44
588 664 2.926242 CCACCCCACACCTACCGT 60.926 66.667 0.00 0.00 0.00 4.83
589 665 3.712907 CCCACCCCACACCTACCG 61.713 72.222 0.00 0.00 0.00 4.02
590 666 3.335729 CCCCACCCCACACCTACC 61.336 72.222 0.00 0.00 0.00 3.18
591 667 1.848895 TTCCCCACCCCACACCTAC 60.849 63.158 0.00 0.00 0.00 3.18
592 668 1.848895 GTTCCCCACCCCACACCTA 60.849 63.158 0.00 0.00 0.00 3.08
593 669 3.182996 GTTCCCCACCCCACACCT 61.183 66.667 0.00 0.00 0.00 4.00
594 670 3.503839 TGTTCCCCACCCCACACC 61.504 66.667 0.00 0.00 0.00 4.16
595 671 2.115266 CTGTTCCCCACCCCACAC 59.885 66.667 0.00 0.00 0.00 3.82
596 672 3.182263 CCTGTTCCCCACCCCACA 61.182 66.667 0.00 0.00 0.00 4.17
597 673 2.856988 TCCTGTTCCCCACCCCAC 60.857 66.667 0.00 0.00 0.00 4.61
598 674 2.856988 GTCCTGTTCCCCACCCCA 60.857 66.667 0.00 0.00 0.00 4.96
599 675 3.658422 GGTCCTGTTCCCCACCCC 61.658 72.222 0.00 0.00 0.00 4.95
600 676 2.856988 TGGTCCTGTTCCCCACCC 60.857 66.667 0.00 0.00 0.00 4.61
601 677 2.757077 CTGGTCCTGTTCCCCACC 59.243 66.667 0.00 0.00 0.00 4.61
602 678 2.034221 GCTGGTCCTGTTCCCCAC 59.966 66.667 0.00 0.00 0.00 4.61
603 679 2.081787 TTGCTGGTCCTGTTCCCCA 61.082 57.895 0.00 0.00 0.00 4.96
604 680 1.603739 GTTGCTGGTCCTGTTCCCC 60.604 63.158 0.00 0.00 0.00 4.81
605 681 1.966451 CGTTGCTGGTCCTGTTCCC 60.966 63.158 0.00 0.00 0.00 3.97
606 682 1.966451 CCGTTGCTGGTCCTGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
607 683 0.034337 TACCGTTGCTGGTCCTGTTC 59.966 55.000 0.00 0.00 42.62 3.18
608 684 0.470766 TTACCGTTGCTGGTCCTGTT 59.529 50.000 0.00 0.00 42.62 3.16
609 685 0.470766 TTTACCGTTGCTGGTCCTGT 59.529 50.000 0.00 0.00 42.62 4.00
610 686 1.821216 ATTTACCGTTGCTGGTCCTG 58.179 50.000 0.00 0.00 42.62 3.86
611 687 3.926058 ATATTTACCGTTGCTGGTCCT 57.074 42.857 0.00 0.00 42.62 3.85
612 688 3.488553 GCAATATTTACCGTTGCTGGTCC 60.489 47.826 2.36 0.00 43.56 4.46
613 689 3.691498 GCAATATTTACCGTTGCTGGTC 58.309 45.455 2.36 0.00 43.56 4.02
614 690 2.096819 CGCAATATTTACCGTTGCTGGT 59.903 45.455 7.58 1.61 44.44 4.00
615 691 2.540769 CCGCAATATTTACCGTTGCTGG 60.541 50.000 7.58 6.73 44.44 4.85
616 692 2.540769 CCCGCAATATTTACCGTTGCTG 60.541 50.000 7.58 1.55 44.44 4.41
617 693 1.673920 CCCGCAATATTTACCGTTGCT 59.326 47.619 7.58 0.00 44.44 3.91
618 694 1.402613 ACCCGCAATATTTACCGTTGC 59.597 47.619 0.00 0.00 43.49 4.17
619 695 3.127203 TCAACCCGCAATATTTACCGTTG 59.873 43.478 8.12 8.12 0.00 4.10
620 696 3.345414 TCAACCCGCAATATTTACCGTT 58.655 40.909 0.00 0.00 0.00 4.44
621 697 2.988570 TCAACCCGCAATATTTACCGT 58.011 42.857 0.00 0.00 0.00 4.83
622 698 4.286910 CATTCAACCCGCAATATTTACCG 58.713 43.478 0.00 0.00 0.00 4.02
623 699 4.339814 TCCATTCAACCCGCAATATTTACC 59.660 41.667 0.00 0.00 0.00 2.85
624 700 5.067283 ACTCCATTCAACCCGCAATATTTAC 59.933 40.000 0.00 0.00 0.00 2.01
625 701 5.197451 ACTCCATTCAACCCGCAATATTTA 58.803 37.500 0.00 0.00 0.00 1.40
626 702 4.023291 ACTCCATTCAACCCGCAATATTT 58.977 39.130 0.00 0.00 0.00 1.40
627 703 3.631250 ACTCCATTCAACCCGCAATATT 58.369 40.909 0.00 0.00 0.00 1.28
628 704 3.214328 GACTCCATTCAACCCGCAATAT 58.786 45.455 0.00 0.00 0.00 1.28
629 705 2.026729 TGACTCCATTCAACCCGCAATA 60.027 45.455 0.00 0.00 0.00 1.90
630 706 1.271871 TGACTCCATTCAACCCGCAAT 60.272 47.619 0.00 0.00 0.00 3.56
631 707 0.109532 TGACTCCATTCAACCCGCAA 59.890 50.000 0.00 0.00 0.00 4.85
632 708 0.109532 TTGACTCCATTCAACCCGCA 59.890 50.000 0.00 0.00 30.29 5.69
633 709 0.521735 GTTGACTCCATTCAACCCGC 59.478 55.000 4.91 0.00 46.60 6.13
638 714 1.522668 CTGCCGTTGACTCCATTCAA 58.477 50.000 0.00 0.00 32.94 2.69
639 715 0.321564 CCTGCCGTTGACTCCATTCA 60.322 55.000 0.00 0.00 0.00 2.57
640 716 1.026718 CCCTGCCGTTGACTCCATTC 61.027 60.000 0.00 0.00 0.00 2.67
641 717 1.002134 CCCTGCCGTTGACTCCATT 60.002 57.895 0.00 0.00 0.00 3.16
642 718 2.671070 CCCTGCCGTTGACTCCAT 59.329 61.111 0.00 0.00 0.00 3.41
643 719 3.636231 CCCCTGCCGTTGACTCCA 61.636 66.667 0.00 0.00 0.00 3.86
654 730 2.322638 TTTTGCACAAAGGCCCCTGC 62.323 55.000 0.00 1.30 0.00 4.85
655 731 0.397564 ATTTTGCACAAAGGCCCCTG 59.602 50.000 0.00 0.00 0.00 4.45
656 732 1.139439 AATTTTGCACAAAGGCCCCT 58.861 45.000 0.00 0.00 0.00 4.79
657 733 1.237533 CAATTTTGCACAAAGGCCCC 58.762 50.000 0.00 0.00 0.00 5.80
658 734 1.237533 CCAATTTTGCACAAAGGCCC 58.762 50.000 0.00 0.00 0.00 5.80
659 735 0.592637 GCCAATTTTGCACAAAGGCC 59.407 50.000 17.15 0.00 34.78 5.19
660 736 1.264826 CTGCCAATTTTGCACAAAGGC 59.735 47.619 19.76 19.76 38.72 4.35
661 737 2.803956 CTCTGCCAATTTTGCACAAAGG 59.196 45.455 3.73 3.73 34.46 3.11
662 738 2.222445 GCTCTGCCAATTTTGCACAAAG 59.778 45.455 0.00 0.00 34.46 2.77
663 739 2.158928 AGCTCTGCCAATTTTGCACAAA 60.159 40.909 0.00 0.00 34.46 2.83
664 740 1.413445 AGCTCTGCCAATTTTGCACAA 59.587 42.857 0.00 0.00 34.46 3.33
665 741 1.042229 AGCTCTGCCAATTTTGCACA 58.958 45.000 0.00 0.00 34.46 4.57
666 742 1.000060 TCAGCTCTGCCAATTTTGCAC 60.000 47.619 0.00 0.00 34.46 4.57
667 743 1.000060 GTCAGCTCTGCCAATTTTGCA 60.000 47.619 0.00 0.00 37.17 4.08
668 744 1.670967 GGTCAGCTCTGCCAATTTTGC 60.671 52.381 0.00 0.00 0.00 3.68
669 745 1.401931 CGGTCAGCTCTGCCAATTTTG 60.402 52.381 9.72 0.00 0.00 2.44
670 746 0.883833 CGGTCAGCTCTGCCAATTTT 59.116 50.000 9.72 0.00 0.00 1.82
671 747 0.962356 CCGGTCAGCTCTGCCAATTT 60.962 55.000 0.00 0.00 0.00 1.82
672 748 1.377725 CCGGTCAGCTCTGCCAATT 60.378 57.895 0.00 0.00 0.00 2.32
673 749 2.270205 CCGGTCAGCTCTGCCAAT 59.730 61.111 0.00 0.00 0.00 3.16
674 750 3.240134 GACCGGTCAGCTCTGCCAA 62.240 63.158 29.75 0.00 0.00 4.52
675 751 3.695606 GACCGGTCAGCTCTGCCA 61.696 66.667 29.75 0.00 0.00 4.92
676 752 4.459089 GGACCGGTCAGCTCTGCC 62.459 72.222 34.40 12.98 0.00 4.85
677 753 2.914777 GATGGACCGGTCAGCTCTGC 62.915 65.000 34.40 16.51 0.00 4.26
678 754 1.142748 GATGGACCGGTCAGCTCTG 59.857 63.158 34.40 0.00 0.00 3.35
679 755 2.060980 GGATGGACCGGTCAGCTCT 61.061 63.158 34.40 14.36 0.00 4.09
680 756 2.022240 GAGGATGGACCGGTCAGCTC 62.022 65.000 34.40 24.83 44.74 4.09
681 757 2.039624 AGGATGGACCGGTCAGCT 59.960 61.111 34.40 18.73 44.74 4.24
682 758 2.060980 AGAGGATGGACCGGTCAGC 61.061 63.158 34.40 22.32 44.74 4.26
683 759 1.819229 CAGAGGATGGACCGGTCAG 59.181 63.158 34.40 10.43 44.74 3.51
684 760 4.034246 CAGAGGATGGACCGGTCA 57.966 61.111 34.40 21.15 44.74 4.02
693 769 0.617413 AAGTGGCAGTCCAGAGGATG 59.383 55.000 0.00 0.00 44.48 3.51
694 770 0.617413 CAAGTGGCAGTCCAGAGGAT 59.383 55.000 0.00 0.00 44.48 3.24
695 771 0.764369 ACAAGTGGCAGTCCAGAGGA 60.764 55.000 0.00 0.00 44.48 3.71
696 772 0.321122 GACAAGTGGCAGTCCAGAGG 60.321 60.000 0.00 0.00 44.48 3.69
697 773 0.394192 TGACAAGTGGCAGTCCAGAG 59.606 55.000 0.00 0.00 44.48 3.35
698 774 0.106708 GTGACAAGTGGCAGTCCAGA 59.893 55.000 0.00 0.00 44.48 3.86
699 775 1.224069 CGTGACAAGTGGCAGTCCAG 61.224 60.000 0.00 0.00 44.48 3.86
700 776 1.227527 CGTGACAAGTGGCAGTCCA 60.228 57.895 0.00 0.00 40.85 4.02
701 777 0.814010 AACGTGACAAGTGGCAGTCC 60.814 55.000 0.00 0.00 30.83 3.85
702 778 0.304705 CAACGTGACAAGTGGCAGTC 59.695 55.000 0.00 0.00 30.83 3.51
703 779 0.392461 ACAACGTGACAAGTGGCAGT 60.392 50.000 0.00 0.00 30.83 4.40
704 780 0.027979 CACAACGTGACAAGTGGCAG 59.972 55.000 0.00 0.00 35.23 4.85
705 781 0.391793 TCACAACGTGACAAGTGGCA 60.392 50.000 0.00 0.00 37.67 4.92
706 782 0.304705 CTCACAACGTGACAAGTGGC 59.695 55.000 0.00 0.00 37.67 5.01
707 783 1.327460 CACTCACAACGTGACAAGTGG 59.673 52.381 11.51 0.00 37.67 4.00
708 784 1.327460 CCACTCACAACGTGACAAGTG 59.673 52.381 12.12 12.12 37.67 3.16
709 785 1.206132 TCCACTCACAACGTGACAAGT 59.794 47.619 0.00 0.00 37.67 3.16
710 786 1.934589 TCCACTCACAACGTGACAAG 58.065 50.000 0.00 0.00 37.67 3.16
711 787 2.209273 CATCCACTCACAACGTGACAA 58.791 47.619 0.00 0.00 37.67 3.18
712 788 1.138069 ACATCCACTCACAACGTGACA 59.862 47.619 0.00 0.00 37.67 3.58
713 789 1.526887 CACATCCACTCACAACGTGAC 59.473 52.381 0.00 0.00 37.67 3.67
714 790 1.540146 CCACATCCACTCACAACGTGA 60.540 52.381 0.00 0.00 40.50 4.35
715 791 0.867746 CCACATCCACTCACAACGTG 59.132 55.000 0.00 0.00 34.45 4.49
716 792 0.756294 TCCACATCCACTCACAACGT 59.244 50.000 0.00 0.00 0.00 3.99
717 793 1.148310 GTCCACATCCACTCACAACG 58.852 55.000 0.00 0.00 0.00 4.10
718 794 1.202758 TGGTCCACATCCACTCACAAC 60.203 52.381 0.00 0.00 0.00 3.32
719 795 1.135960 TGGTCCACATCCACTCACAA 58.864 50.000 0.00 0.00 0.00 3.33
720 796 1.135960 TTGGTCCACATCCACTCACA 58.864 50.000 0.00 0.00 34.45 3.58
721 797 2.270352 TTTGGTCCACATCCACTCAC 57.730 50.000 0.00 0.00 34.45 3.51
722 798 2.092158 TGTTTTGGTCCACATCCACTCA 60.092 45.455 0.00 0.00 34.45 3.41
723 799 2.582052 TGTTTTGGTCCACATCCACTC 58.418 47.619 0.00 0.00 34.45 3.51
724 800 2.746279 TGTTTTGGTCCACATCCACT 57.254 45.000 0.00 0.00 34.45 4.00
725 801 2.890311 TGATGTTTTGGTCCACATCCAC 59.110 45.455 15.07 0.00 46.01 4.02
726 802 2.890311 GTGATGTTTTGGTCCACATCCA 59.110 45.455 15.07 1.49 46.01 3.41
727 803 2.890311 TGTGATGTTTTGGTCCACATCC 59.110 45.455 15.07 9.17 46.01 3.51
728 804 4.789012 ATGTGATGTTTTGGTCCACATC 57.211 40.909 12.12 12.12 46.53 3.06
729 805 5.569355 TCTATGTGATGTTTTGGTCCACAT 58.431 37.500 0.00 0.00 46.37 3.21
730 806 4.979335 TCTATGTGATGTTTTGGTCCACA 58.021 39.130 0.00 0.00 41.24 4.17
731 807 5.003804 ACTCTATGTGATGTTTTGGTCCAC 58.996 41.667 0.00 0.00 0.00 4.02
732 808 5.241403 ACTCTATGTGATGTTTTGGTCCA 57.759 39.130 0.00 0.00 0.00 4.02
747 823 6.809196 GGACTCTTACAACTTGACACTCTATG 59.191 42.308 0.00 0.00 0.00 2.23
748 824 6.722129 AGGACTCTTACAACTTGACACTCTAT 59.278 38.462 0.00 0.00 0.00 1.98
749 825 6.069331 AGGACTCTTACAACTTGACACTCTA 58.931 40.000 0.00 0.00 0.00 2.43
750 826 4.896482 AGGACTCTTACAACTTGACACTCT 59.104 41.667 0.00 0.00 0.00 3.24
751 827 5.203060 AGGACTCTTACAACTTGACACTC 57.797 43.478 0.00 0.00 0.00 3.51
752 828 4.649674 TGAGGACTCTTACAACTTGACACT 59.350 41.667 0.56 0.00 0.00 3.55
753 829 4.945246 TGAGGACTCTTACAACTTGACAC 58.055 43.478 0.56 0.00 0.00 3.67
754 830 5.607939 TTGAGGACTCTTACAACTTGACA 57.392 39.130 0.56 0.00 0.00 3.58
755 831 7.656137 TGTTATTGAGGACTCTTACAACTTGAC 59.344 37.037 0.56 0.00 0.00 3.18
756 832 7.732025 TGTTATTGAGGACTCTTACAACTTGA 58.268 34.615 0.56 0.00 0.00 3.02
757 833 7.962964 TGTTATTGAGGACTCTTACAACTTG 57.037 36.000 0.56 0.00 0.00 3.16
758 834 9.574516 AAATGTTATTGAGGACTCTTACAACTT 57.425 29.630 0.56 0.00 0.00 2.66
759 835 9.574516 AAAATGTTATTGAGGACTCTTACAACT 57.425 29.630 0.56 0.00 0.00 3.16
760 836 9.612620 CAAAATGTTATTGAGGACTCTTACAAC 57.387 33.333 0.56 1.54 0.00 3.32
761 837 9.349713 ACAAAATGTTATTGAGGACTCTTACAA 57.650 29.630 0.56 0.00 0.00 2.41
762 838 8.918202 ACAAAATGTTATTGAGGACTCTTACA 57.082 30.769 0.56 1.01 0.00 2.41
765 841 9.533253 CAAAACAAAATGTTATTGAGGACTCTT 57.467 29.630 0.56 0.00 40.14 2.85
766 842 8.143835 CCAAAACAAAATGTTATTGAGGACTCT 58.856 33.333 14.19 0.00 40.14 3.24
767 843 8.141268 TCCAAAACAAAATGTTATTGAGGACTC 58.859 33.333 14.19 0.00 40.14 3.36
768 844 7.926018 GTCCAAAACAAAATGTTATTGAGGACT 59.074 33.333 16.49 0.00 40.14 3.85
769 845 7.926018 AGTCCAAAACAAAATGTTATTGAGGAC 59.074 33.333 16.25 16.25 40.14 3.85
770 846 8.017418 AGTCCAAAACAAAATGTTATTGAGGA 57.983 30.769 14.19 7.98 40.14 3.71
771 847 9.757227 TTAGTCCAAAACAAAATGTTATTGAGG 57.243 29.630 14.19 6.45 40.14 3.86
788 864 9.109393 GCACAGAATATGATACTTTAGTCCAAA 57.891 33.333 0.00 0.00 0.00 3.28
789 865 8.264347 TGCACAGAATATGATACTTTAGTCCAA 58.736 33.333 0.00 0.00 0.00 3.53
790 866 7.791029 TGCACAGAATATGATACTTTAGTCCA 58.209 34.615 0.00 0.00 0.00 4.02
791 867 8.662781 TTGCACAGAATATGATACTTTAGTCC 57.337 34.615 0.00 0.00 0.00 3.85
792 868 9.319143 ACTTGCACAGAATATGATACTTTAGTC 57.681 33.333 0.00 0.00 0.00 2.59
793 869 9.672673 AACTTGCACAGAATATGATACTTTAGT 57.327 29.630 0.00 0.00 0.00 2.24
796 872 8.796475 ACAAACTTGCACAGAATATGATACTTT 58.204 29.630 0.00 0.00 0.00 2.66
797 873 8.239314 CACAAACTTGCACAGAATATGATACTT 58.761 33.333 0.00 0.00 0.00 2.24
798 874 7.148188 CCACAAACTTGCACAGAATATGATACT 60.148 37.037 0.00 0.00 0.00 2.12
799 875 6.968904 CCACAAACTTGCACAGAATATGATAC 59.031 38.462 0.00 0.00 0.00 2.24
800 876 6.883756 TCCACAAACTTGCACAGAATATGATA 59.116 34.615 0.00 0.00 0.00 2.15
801 877 5.711506 TCCACAAACTTGCACAGAATATGAT 59.288 36.000 0.00 0.00 0.00 2.45
802 878 5.069318 TCCACAAACTTGCACAGAATATGA 58.931 37.500 0.00 0.00 0.00 2.15
803 879 5.375417 TCCACAAACTTGCACAGAATATG 57.625 39.130 0.00 0.00 0.00 1.78
804 880 5.948162 AGATCCACAAACTTGCACAGAATAT 59.052 36.000 0.00 0.00 0.00 1.28
805 881 5.181811 CAGATCCACAAACTTGCACAGAATA 59.818 40.000 0.00 0.00 0.00 1.75
806 882 4.022589 CAGATCCACAAACTTGCACAGAAT 60.023 41.667 0.00 0.00 0.00 2.40
807 883 3.316029 CAGATCCACAAACTTGCACAGAA 59.684 43.478 0.00 0.00 0.00 3.02
808 884 2.880268 CAGATCCACAAACTTGCACAGA 59.120 45.455 0.00 0.00 0.00 3.41
809 885 2.030540 CCAGATCCACAAACTTGCACAG 60.031 50.000 0.00 0.00 0.00 3.66
810 886 1.955778 CCAGATCCACAAACTTGCACA 59.044 47.619 0.00 0.00 0.00 4.57
811 887 1.270550 CCCAGATCCACAAACTTGCAC 59.729 52.381 0.00 0.00 0.00 4.57
812 888 1.619654 CCCAGATCCACAAACTTGCA 58.380 50.000 0.00 0.00 0.00 4.08
813 889 0.890683 CCCCAGATCCACAAACTTGC 59.109 55.000 0.00 0.00 0.00 4.01
814 890 1.888512 CACCCCAGATCCACAAACTTG 59.111 52.381 0.00 0.00 0.00 3.16
815 891 1.823250 GCACCCCAGATCCACAAACTT 60.823 52.381 0.00 0.00 0.00 2.66
816 892 0.251341 GCACCCCAGATCCACAAACT 60.251 55.000 0.00 0.00 0.00 2.66
817 893 0.251341 AGCACCCCAGATCCACAAAC 60.251 55.000 0.00 0.00 0.00 2.93
818 894 1.367346 TAGCACCCCAGATCCACAAA 58.633 50.000 0.00 0.00 0.00 2.83
819 895 1.595311 ATAGCACCCCAGATCCACAA 58.405 50.000 0.00 0.00 0.00 3.33
820 896 1.595311 AATAGCACCCCAGATCCACA 58.405 50.000 0.00 0.00 0.00 4.17
821 897 2.706190 AGTAATAGCACCCCAGATCCAC 59.294 50.000 0.00 0.00 0.00 4.02
822 898 3.060479 AGTAATAGCACCCCAGATCCA 57.940 47.619 0.00 0.00 0.00 3.41
823 899 4.439253 AAAGTAATAGCACCCCAGATCC 57.561 45.455 0.00 0.00 0.00 3.36
848 924 9.844790 CAAAATATGAGAATCTACTTGCAACAA 57.155 29.630 0.00 0.00 34.92 2.83
849 925 8.461222 CCAAAATATGAGAATCTACTTGCAACA 58.539 33.333 0.00 0.00 34.92 3.33
850 926 8.462016 ACCAAAATATGAGAATCTACTTGCAAC 58.538 33.333 0.00 0.00 34.92 4.17
866 942 9.760077 ACTACGATTTAGTCCTACCAAAATATG 57.240 33.333 0.00 0.00 0.00 1.78
954 1033 1.301009 CGCGAGGGAAATAGCCTCC 60.301 63.158 0.00 0.00 0.00 4.30
955 1034 0.104304 TTCGCGAGGGAAATAGCCTC 59.896 55.000 9.59 0.00 0.00 4.70
991 1070 2.888863 CGGAGGACTGAGGTGAGC 59.111 66.667 0.00 0.00 0.00 4.26
997 1076 3.775654 GGTGGGCGGAGGACTGAG 61.776 72.222 0.00 0.00 0.00 3.35
1007 1086 2.834505 CATTGATGGGGGTGGGCG 60.835 66.667 0.00 0.00 0.00 6.13
1008 1087 2.444517 CCATTGATGGGGGTGGGC 60.445 66.667 1.92 0.00 44.31 5.36
1018 1107 4.875713 GCCCCCGTCGCCATTGAT 62.876 66.667 0.00 0.00 0.00 2.57
1300 1406 4.115199 AATGGGGTGGAGGCGAGC 62.115 66.667 0.00 0.00 0.00 5.03
1415 1866 1.396301 GTCTCTGCAAATTCAGCGAGG 59.604 52.381 16.56 5.23 35.17 4.63
1423 1876 1.160137 GCCGACTGTCTCTGCAAATT 58.840 50.000 6.21 0.00 0.00 1.82
1496 1950 7.132694 TGATAACTGCAGACAACATTAACAG 57.867 36.000 23.35 0.00 0.00 3.16
1546 2000 2.407616 CAGCATGACGCAGGCATG 59.592 61.111 16.85 16.85 43.99 4.06
1587 2047 8.696374 TCCAGTTAAAGACCTGATATAGAACTG 58.304 37.037 0.00 0.00 40.44 3.16
1634 2106 9.860898 AGCAGACAATAATTTGTTTTCTATTCC 57.139 29.630 0.00 0.00 46.01 3.01
1638 2110 8.855110 TCCAAGCAGACAATAATTTGTTTTCTA 58.145 29.630 0.00 0.00 46.01 2.10
1640 2112 7.945033 TCCAAGCAGACAATAATTTGTTTTC 57.055 32.000 0.00 0.00 46.01 2.29
1667 2141 6.473778 CCAAACAGACGATTAGATCACACTAG 59.526 42.308 0.00 0.00 0.00 2.57
1686 2166 2.361757 CTGCTCAATTCCACACCAAACA 59.638 45.455 0.00 0.00 0.00 2.83
1722 2202 2.960688 GCTCTGAAACCTCCCGCCT 61.961 63.158 0.00 0.00 0.00 5.52
1845 2325 1.868469 CGGTCGGGAAGTTGTTGTAA 58.132 50.000 0.00 0.00 0.00 2.41
1969 2450 4.102054 TCCAAGTCTAACCCGAAATATCCC 59.898 45.833 0.00 0.00 0.00 3.85
2044 2525 5.369993 AGAGAATAAGAAATACACCCCCTCC 59.630 44.000 0.00 0.00 0.00 4.30
2104 2585 5.302360 AGGTAAGAGCAACAACAACGAATA 58.698 37.500 0.00 0.00 0.00 1.75
2206 2742 4.780815 TGGACAACCTTAATAGCAGGATG 58.219 43.478 0.00 0.00 39.54 3.51
2316 2853 1.418637 ACCAGCAGACCGGAACTAAAA 59.581 47.619 9.46 0.00 0.00 1.52
2361 2901 4.988540 GGTAAGACCAGCCATTTTTCAAAC 59.011 41.667 0.00 0.00 38.42 2.93
2362 2902 4.651503 TGGTAAGACCAGCCATTTTTCAAA 59.348 37.500 0.00 0.00 44.79 2.69
2528 3071 9.877178 AAAATAGAAGTAGTAGTGGACAATCAG 57.123 33.333 0.00 0.00 0.00 2.90
2626 3170 3.818773 CCGAGGGTGAAAACTACAAACAT 59.181 43.478 0.00 0.00 0.00 2.71
2710 3261 6.523201 GTGTTGCTCCAAAATTTATCAGTACG 59.477 38.462 0.00 0.00 0.00 3.67
2711 3262 7.593825 AGTGTTGCTCCAAAATTTATCAGTAC 58.406 34.615 0.00 0.00 0.00 2.73
2720 3271 5.111293 CAAACAGAGTGTTGCTCCAAAATT 58.889 37.500 0.00 0.00 45.21 1.82
2724 3275 2.423185 CACAAACAGAGTGTTGCTCCAA 59.577 45.455 0.00 0.00 45.21 3.53
2836 3598 1.846007 AGTCGTCAGCCTGAGAGAAT 58.154 50.000 0.00 0.00 0.00 2.40
2844 3606 1.222115 GCGTTGAAAGTCGTCAGCCT 61.222 55.000 0.00 0.00 0.00 4.58
2852 3615 1.576421 CCTGCCTGCGTTGAAAGTC 59.424 57.895 0.00 0.00 0.00 3.01
2854 3617 2.629656 CCCCTGCCTGCGTTGAAAG 61.630 63.158 0.00 0.00 0.00 2.62
3155 3919 3.982475 TCGATGAGCAATATCCAGTGAC 58.018 45.455 0.00 0.00 0.00 3.67
3159 3923 5.064834 CCATGATTCGATGAGCAATATCCAG 59.935 44.000 0.00 0.00 0.00 3.86
3177 3941 3.985019 TGGTGTTAACGGTACCATGAT 57.015 42.857 13.54 0.00 39.43 2.45
3185 3949 4.976864 AGTAAAGGATTGGTGTTAACGGT 58.023 39.130 0.26 0.00 0.00 4.83
3405 4185 8.592155 TCGATGATTCGTAAAAAGATTGTACAG 58.408 33.333 0.00 0.00 45.65 2.74
3414 4195 5.350365 TGTTCCCTCGATGATTCGTAAAAAG 59.650 40.000 0.00 0.00 45.65 2.27
3473 4262 1.842381 GAGGGTCCACACAAGAGGGG 61.842 65.000 0.00 0.00 0.00 4.79
3543 4346 6.872920 AGAGCAAGAAACCACAAAAATTGTA 58.127 32.000 0.00 0.00 43.23 2.41
3544 4347 5.733676 AGAGCAAGAAACCACAAAAATTGT 58.266 33.333 0.00 0.00 46.75 2.71
3549 4352 4.016444 AGTGAGAGCAAGAAACCACAAAA 58.984 39.130 0.00 0.00 0.00 2.44
3551 4354 2.945008 CAGTGAGAGCAAGAAACCACAA 59.055 45.455 0.00 0.00 0.00 3.33
3553 4356 2.289002 CACAGTGAGAGCAAGAAACCAC 59.711 50.000 0.00 0.00 0.00 4.16
3555 4358 1.265365 GCACAGTGAGAGCAAGAAACC 59.735 52.381 4.15 0.00 33.66 3.27
3578 4394 6.147164 TCTGGAATACAAGAAAAAGTAGTGCG 59.853 38.462 0.00 0.00 30.81 5.34
3685 4503 4.877823 CAGCATGAAACTGGTTGCTATCTA 59.122 41.667 0.00 0.00 43.25 1.98
3944 4764 1.670295 CTATATGCAGCACCAACGCAA 59.330 47.619 0.00 0.00 39.48 4.85
3950 4969 2.126882 AGAACCCTATATGCAGCACCA 58.873 47.619 0.00 0.00 0.00 4.17
4215 5483 2.575532 TGACTGCTCCAGAACCAAAAG 58.424 47.619 0.00 0.00 35.18 2.27
4217 5485 2.727123 TTGACTGCTCCAGAACCAAA 57.273 45.000 0.00 0.00 35.18 3.28
4289 5561 8.299570 TCTGCTTCCATTAGAATTTCAAACTTC 58.700 33.333 0.00 0.00 32.82 3.01
4309 5581 6.098982 AGCAGTATACCAAGATACTTCTGCTT 59.901 38.462 13.42 0.00 40.03 3.91
4466 5739 5.649782 ACCTAATGCCAAGTTGATTTGAG 57.350 39.130 3.87 0.00 0.00 3.02
4618 5903 2.427453 AGTCTAGGTGAAGTGCATACCG 59.573 50.000 0.00 0.00 39.46 4.02
4693 5978 2.975489 AGAGATCAAACACACCTGTCCT 59.025 45.455 0.00 0.00 0.00 3.85
4695 5980 7.440523 AATTTAGAGATCAAACACACCTGTC 57.559 36.000 0.00 0.00 0.00 3.51
4696 5981 7.255590 CCAAATTTAGAGATCAAACACACCTGT 60.256 37.037 0.00 0.00 0.00 4.00
4697 5982 7.086376 CCAAATTTAGAGATCAAACACACCTG 58.914 38.462 0.00 0.00 0.00 4.00
4698 5983 6.294731 GCCAAATTTAGAGATCAAACACACCT 60.295 38.462 0.00 0.00 0.00 4.00
4699 5984 5.863935 GCCAAATTTAGAGATCAAACACACC 59.136 40.000 0.00 0.00 0.00 4.16
4704 5989 8.761575 TCAAATGCCAAATTTAGAGATCAAAC 57.238 30.769 0.00 0.00 0.00 2.93
4705 5990 9.590451 GATCAAATGCCAAATTTAGAGATCAAA 57.410 29.630 0.00 0.00 0.00 2.69
4706 5991 8.974238 AGATCAAATGCCAAATTTAGAGATCAA 58.026 29.630 0.00 0.00 32.71 2.57
4707 5992 8.529424 AGATCAAATGCCAAATTTAGAGATCA 57.471 30.769 0.00 0.00 32.71 2.92
4708 5993 8.848182 AGAGATCAAATGCCAAATTTAGAGATC 58.152 33.333 0.00 0.00 0.00 2.75
4709 5994 8.763984 AGAGATCAAATGCCAAATTTAGAGAT 57.236 30.769 0.00 0.00 0.00 2.75
4710 5995 8.464404 CAAGAGATCAAATGCCAAATTTAGAGA 58.536 33.333 0.00 0.00 0.00 3.10
4711 5996 8.248945 ACAAGAGATCAAATGCCAAATTTAGAG 58.751 33.333 0.00 0.00 0.00 2.43
4807 6092 1.650528 CCTCTGAAGGAGAAGGGTGT 58.349 55.000 0.00 0.00 46.67 4.16
5039 6325 1.141881 CGGTGTCTTCATCTCCGGG 59.858 63.158 0.00 0.00 38.00 5.73
5057 6343 3.378911 TCGCCCTTGAATTTTTGGTTC 57.621 42.857 0.00 0.00 0.00 3.62
5434 6720 2.483876 TCAAAAGAACAGCTCCGTCTG 58.516 47.619 0.00 0.00 39.86 3.51
5591 6885 5.285401 TCATGGTAATTTCTAGGGAGTCCA 58.715 41.667 12.30 0.00 34.83 4.02
5621 6915 6.231211 CACCAGATTAACGGCTCCTAATTAT 58.769 40.000 0.00 0.00 0.00 1.28
5649 6943 8.294577 GGTTAATCTTACGCCCTAATAATTTGG 58.705 37.037 0.00 0.00 0.00 3.28
5660 6954 2.501261 GGATGGGTTAATCTTACGCCC 58.499 52.381 0.00 0.00 39.73 6.13
5666 6960 9.777008 TTTATTACAAAGGGATGGGTTAATCTT 57.223 29.630 0.00 0.00 0.00 2.40
5798 7092 5.986135 GGACTGCGCTTATATATTGGATAGG 59.014 44.000 9.73 0.00 0.00 2.57
5819 7113 2.182842 GCGGCCATGACATGAGGAC 61.183 63.158 17.24 2.08 0.00 3.85
5980 7285 6.713903 TGATTGATCAGAGGAGGATTTAATGC 59.286 38.462 0.00 0.00 32.11 3.56
6001 7306 1.215423 GGGGGCTCTAACACCATGATT 59.785 52.381 0.00 0.00 0.00 2.57
6027 7332 3.470709 CGCATGGTATGAGGAACAGAAT 58.529 45.455 0.00 0.00 0.00 2.40
6095 7400 4.423732 CCGCGGTAGTAGCTTTTAACTTA 58.576 43.478 19.50 0.00 0.00 2.24
6138 7443 3.492337 TGCGTTGGGGAAAACTTTATCT 58.508 40.909 0.00 0.00 0.00 1.98
6142 7447 1.550976 TGTTGCGTTGGGGAAAACTTT 59.449 42.857 0.00 0.00 0.00 2.66
6377 8217 9.905713 ATTATTGCTGATAGACCTAAAAAGTGA 57.094 29.630 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.