Multiple sequence alignment - TraesCS3B01G584700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G584700 chr3B 100.000 2441 0 0 1 2441 811495686 811498126 0.000000e+00 4508.0
1 TraesCS3B01G584700 chr3B 85.239 1172 116 35 1 1153 811471113 811472246 0.000000e+00 1153.0
2 TraesCS3B01G584700 chr3D 86.724 1627 139 42 12 1609 604446876 604448454 0.000000e+00 1736.0
3 TraesCS3B01G584700 chr3D 84.195 329 20 17 2034 2339 604448754 604449073 8.540000e-75 291.0
4 TraesCS3B01G584700 chr3D 87.037 54 6 1 1939 1991 600171958 600171905 2.620000e-05 60.2
5 TraesCS3B01G584700 chr3A 86.706 1512 108 32 149 1607 734151061 734152532 0.000000e+00 1592.0
6 TraesCS3B01G584700 chr3A 91.129 124 11 0 2313 2436 734167236 734167359 4.170000e-38 169.0
7 TraesCS3B01G584700 chr2B 87.441 422 51 2 1018 1438 769378591 769378171 3.650000e-133 484.0
8 TraesCS3B01G584700 chr2B 87.173 421 54 0 1018 1438 769428900 769428480 1.700000e-131 479.0
9 TraesCS3B01G584700 chr2B 87.591 411 51 0 1028 1438 769478557 769478147 6.110000e-131 477.0
10 TraesCS3B01G584700 chr2B 85.511 421 55 2 1018 1438 769491294 769490880 3.730000e-118 435.0
11 TraesCS3B01G584700 chr2B 80.534 262 49 2 4 263 608359611 608359350 1.480000e-47 200.0
12 TraesCS3B01G584700 chr2B 82.589 224 36 3 1 221 690685492 690685715 6.890000e-46 195.0
13 TraesCS3B01G584700 chr2A 87.173 421 54 0 1018 1438 758056045 758055625 1.700000e-131 479.0
14 TraesCS3B01G584700 chr2A 95.556 45 2 0 1991 2035 748811705 748811661 3.370000e-09 73.1
15 TraesCS3B01G584700 chr2D 86.936 421 49 2 1018 1438 627361674 627361260 3.680000e-128 468.0
16 TraesCS3B01G584700 chrUn 81.473 421 55 5 1018 1438 316524949 316524552 8.420000e-85 324.0
17 TraesCS3B01G584700 chr6B 81.041 269 48 3 1 266 594782820 594782552 6.840000e-51 211.0
18 TraesCS3B01G584700 chr6B 80.741 270 47 4 1 266 594780292 594780024 3.180000e-49 206.0
19 TraesCS3B01G584700 chr1B 80.882 272 42 9 1 266 441381516 441381249 3.180000e-49 206.0
20 TraesCS3B01G584700 chr1B 80.612 98 18 1 1938 2035 329961684 329961780 9.360000e-10 75.0
21 TraesCS3B01G584700 chr7D 80.443 271 48 3 1 266 249797290 249797020 4.120000e-48 202.0
22 TraesCS3B01G584700 chr7D 85.294 102 12 3 1936 2035 60669482 60669582 4.290000e-18 102.0
23 TraesCS3B01G584700 chr5D 80.741 270 36 10 1 267 129882293 129882549 1.910000e-46 196.0
24 TraesCS3B01G584700 chr7B 80.074 271 45 5 1 264 213055214 213055482 2.480000e-45 193.0
25 TraesCS3B01G584700 chr7B 97.500 40 0 1 1650 1689 748668023 748668061 1.570000e-07 67.6
26 TraesCS3B01G584700 chr6A 78.414 227 35 11 1050 1273 564260160 564260375 4.230000e-28 135.0
27 TraesCS3B01G584700 chr6A 100.000 36 0 0 1654 1689 594765602 594765567 1.570000e-07 67.6
28 TraesCS3B01G584700 chr6D 85.714 98 12 2 1939 2035 463644915 463645011 4.290000e-18 102.0
29 TraesCS3B01G584700 chr4D 100.000 37 0 0 1653 1689 105943259 105943223 4.360000e-08 69.4
30 TraesCS3B01G584700 chr4D 100.000 36 0 0 1654 1689 40013244 40013279 1.570000e-07 67.6
31 TraesCS3B01G584700 chr4D 100.000 36 0 0 1654 1689 329011717 329011752 1.570000e-07 67.6
32 TraesCS3B01G584700 chr4D 100.000 36 0 0 1654 1689 493930105 493930070 1.570000e-07 67.6
33 TraesCS3B01G584700 chr1A 93.617 47 1 1 1645 1689 70700006 70699960 4.360000e-08 69.4
34 TraesCS3B01G584700 chr4A 100.000 36 0 0 1654 1689 660219957 660219992 1.570000e-07 67.6
35 TraesCS3B01G584700 chr4B 95.122 41 1 1 1649 1689 435169684 435169723 2.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G584700 chr3B 811495686 811498126 2440 False 4508.0 4508 100.0000 1 2441 1 chr3B.!!$F2 2440
1 TraesCS3B01G584700 chr3B 811471113 811472246 1133 False 1153.0 1153 85.2390 1 1153 1 chr3B.!!$F1 1152
2 TraesCS3B01G584700 chr3D 604446876 604449073 2197 False 1013.5 1736 85.4595 12 2339 2 chr3D.!!$F1 2327
3 TraesCS3B01G584700 chr3A 734151061 734152532 1471 False 1592.0 1592 86.7060 149 1607 1 chr3A.!!$F1 1458
4 TraesCS3B01G584700 chr6B 594780024 594782820 2796 True 208.5 211 80.8910 1 266 2 chr6B.!!$R1 265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 3206 0.183492 TCCAGTAGCATTCATGGGGC 59.817 55.0 0.0 0.0 33.45 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 4746 0.036858 AGAAGCGCCAGAGAAAGACC 60.037 55.0 2.29 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.960683 CCTCGAGATCGTATAAATAAGCTCG 59.039 44.000 15.71 0.00 43.63 5.03
64 65 6.368243 TCGAGATCGTATAAATAAGCTCGAGT 59.632 38.462 15.13 0.00 45.22 4.18
65 66 7.543520 TCGAGATCGTATAAATAAGCTCGAGTA 59.456 37.037 15.13 0.00 45.22 2.59
82 86 7.122353 AGCTCGAGTATAAAACCTTGTCTCTAA 59.878 37.037 15.13 0.00 0.00 2.10
98 102 2.764572 CTCTAAAGGCTAAACCCCTCGA 59.235 50.000 0.00 0.00 40.58 4.04
130 134 3.870559 CACCAGGGGTATCTAGGGTTAT 58.129 50.000 0.00 0.00 32.11 1.89
138 142 8.120538 CAGGGGTATCTAGGGTTATAAGTATGA 58.879 40.741 0.00 0.00 0.00 2.15
139 143 8.868279 AGGGGTATCTAGGGTTATAAGTATGAT 58.132 37.037 0.00 0.00 0.00 2.45
179 2711 6.371809 AACATGCCGATCATTTAAATACGT 57.628 33.333 0.00 0.00 31.79 3.57
227 2759 5.068723 GGAGGATTCCATCTTGAGTACGTTA 59.931 44.000 5.29 0.00 43.45 3.18
230 2762 5.449588 GGATTCCATCTTGAGTACGTTACGA 60.450 44.000 13.03 0.00 0.00 3.43
232 2764 4.256110 TCCATCTTGAGTACGTTACGAGA 58.744 43.478 13.03 2.61 0.00 4.04
285 2828 0.251297 CTCTGCCCAACAATGGTGGA 60.251 55.000 20.66 0.00 46.01 4.02
318 2861 4.964897 TGTAGATCCACTGATTCAGGACAT 59.035 41.667 17.66 6.01 35.51 3.06
323 2866 2.167281 CCACTGATTCAGGACATCGTCT 59.833 50.000 17.66 0.00 35.51 4.18
329 2872 1.924731 TCAGGACATCGTCTTCAGGT 58.075 50.000 0.00 0.00 32.47 4.00
330 2873 3.081710 TCAGGACATCGTCTTCAGGTA 57.918 47.619 0.00 0.00 32.47 3.08
331 2874 2.753452 TCAGGACATCGTCTTCAGGTAC 59.247 50.000 0.00 0.00 32.47 3.34
332 2875 2.100989 AGGACATCGTCTTCAGGTACC 58.899 52.381 2.73 2.73 32.47 3.34
338 2881 1.968493 TCGTCTTCAGGTACCTGCTTT 59.032 47.619 33.39 0.11 43.31 3.51
367 2910 1.925185 GAGGAGTTCAACGGCGATAAC 59.075 52.381 16.62 14.32 0.00 1.89
368 2911 0.643820 GGAGTTCAACGGCGATAACG 59.356 55.000 16.62 0.00 42.93 3.18
398 2941 2.726351 GCGCTGGTCCTTAGAGGCT 61.726 63.158 0.00 0.00 34.61 4.58
406 2949 0.898326 TCCTTAGAGGCTCGTGCACA 60.898 55.000 18.64 3.15 41.91 4.57
423 2967 2.159296 GCACAAAGACTTTCCGGTTGTT 60.159 45.455 0.00 0.00 30.20 2.83
426 2970 4.014406 ACAAAGACTTTCCGGTTGTTCTT 58.986 39.130 0.00 3.31 0.00 2.52
452 2996 0.252239 TCAAGCCAGCTCAGGTAGGA 60.252 55.000 0.00 0.00 0.00 2.94
453 2997 0.615331 CAAGCCAGCTCAGGTAGGAA 59.385 55.000 0.00 0.00 0.00 3.36
465 3009 0.524862 GGTAGGAAAGCGACGACAGA 59.475 55.000 0.00 0.00 0.00 3.41
472 3016 3.106407 GCGACGACAGAGGCACAC 61.106 66.667 0.00 0.00 0.00 3.82
475 3019 1.069090 GACGACAGAGGCACACCAA 59.931 57.895 0.00 0.00 39.06 3.67
479 3023 1.915228 ACAGAGGCACACCAACTGT 59.085 52.632 8.44 8.44 44.93 3.55
481 3025 1.340991 ACAGAGGCACACCAACTGTTT 60.341 47.619 8.44 0.00 46.38 2.83
496 3040 4.311816 ACTGTTTGTTCTGAAGGCAATG 57.688 40.909 0.00 0.00 0.00 2.82
529 3073 7.054491 TGATGATCTCGGAATCTCAATGTAA 57.946 36.000 0.00 0.00 0.00 2.41
600 3144 9.638239 TTTGATAAATCGGATCCTTTTCTTTTG 57.362 29.630 10.75 0.00 0.00 2.44
601 3145 8.574251 TGATAAATCGGATCCTTTTCTTTTGA 57.426 30.769 10.75 0.00 0.00 2.69
602 3146 9.019656 TGATAAATCGGATCCTTTTCTTTTGAA 57.980 29.630 10.75 0.00 36.52 2.69
603 3147 9.855021 GATAAATCGGATCCTTTTCTTTTGAAA 57.145 29.630 10.75 0.00 45.65 2.69
628 3173 4.655762 AAGAAAAACTTGCTCCACTTCC 57.344 40.909 0.00 0.00 37.45 3.46
644 3189 6.113411 TCCACTTCCGAGATATTTTTCTTCC 58.887 40.000 0.00 0.00 0.00 3.46
647 3192 6.595716 CACTTCCGAGATATTTTTCTTCCAGT 59.404 38.462 0.00 0.00 0.00 4.00
649 3194 7.982354 ACTTCCGAGATATTTTTCTTCCAGTAG 59.018 37.037 0.00 0.00 0.00 2.57
650 3195 6.281405 TCCGAGATATTTTTCTTCCAGTAGC 58.719 40.000 0.00 0.00 0.00 3.58
652 3197 6.708054 CCGAGATATTTTTCTTCCAGTAGCAT 59.292 38.462 0.00 0.00 0.00 3.79
654 3199 8.279103 CGAGATATTTTTCTTCCAGTAGCATTC 58.721 37.037 0.00 0.00 0.00 2.67
655 3200 9.113838 GAGATATTTTTCTTCCAGTAGCATTCA 57.886 33.333 0.00 0.00 0.00 2.57
656 3201 9.638176 AGATATTTTTCTTCCAGTAGCATTCAT 57.362 29.630 0.00 0.00 0.00 2.57
657 3202 9.674824 GATATTTTTCTTCCAGTAGCATTCATG 57.325 33.333 0.00 0.00 0.00 3.07
658 3203 5.902613 TTTTCTTCCAGTAGCATTCATGG 57.097 39.130 0.00 0.00 0.00 3.66
659 3204 3.565764 TCTTCCAGTAGCATTCATGGG 57.434 47.619 0.00 0.00 33.45 4.00
660 3205 2.173356 TCTTCCAGTAGCATTCATGGGG 59.827 50.000 0.00 0.00 33.45 4.96
661 3206 0.183492 TCCAGTAGCATTCATGGGGC 59.817 55.000 0.00 0.00 33.45 5.80
662 3207 1.168407 CCAGTAGCATTCATGGGGCG 61.168 60.000 0.00 0.00 0.00 6.13
742 3287 5.791666 AGTTAGGTGGCAGAACTAGTTAAC 58.208 41.667 8.42 6.09 31.69 2.01
927 3501 2.097036 TCATCCAGCAGCAAATCCAAG 58.903 47.619 0.00 0.00 0.00 3.61
928 3502 2.097036 CATCCAGCAGCAAATCCAAGA 58.903 47.619 0.00 0.00 0.00 3.02
929 3503 1.538047 TCCAGCAGCAAATCCAAGAC 58.462 50.000 0.00 0.00 0.00 3.01
930 3504 1.202915 TCCAGCAGCAAATCCAAGACA 60.203 47.619 0.00 0.00 0.00 3.41
931 3505 1.068055 CCAGCAGCAAATCCAAGACAC 60.068 52.381 0.00 0.00 0.00 3.67
932 3506 1.610038 CAGCAGCAAATCCAAGACACA 59.390 47.619 0.00 0.00 0.00 3.72
933 3507 1.610522 AGCAGCAAATCCAAGACACAC 59.389 47.619 0.00 0.00 0.00 3.82
1110 3689 4.217159 CACTACTACCGGCCGGCC 62.217 72.222 43.58 36.69 39.32 6.13
1381 3960 1.019278 CAAGATCGACACCAACGGGG 61.019 60.000 0.00 0.00 44.81 5.73
1443 4022 1.655654 CGACTGCCGCGACTAGATG 60.656 63.158 8.23 0.00 0.00 2.90
1445 4024 0.100682 GACTGCCGCGACTAGATGAA 59.899 55.000 8.23 0.00 0.00 2.57
1446 4025 0.530744 ACTGCCGCGACTAGATGAAA 59.469 50.000 8.23 0.00 0.00 2.69
1448 4027 1.524355 CTGCCGCGACTAGATGAAATG 59.476 52.381 8.23 0.00 0.00 2.32
1455 4049 4.192317 GCGACTAGATGAAATGAAAGGGT 58.808 43.478 0.00 0.00 0.00 4.34
1456 4050 5.357257 GCGACTAGATGAAATGAAAGGGTA 58.643 41.667 0.00 0.00 0.00 3.69
1460 4054 6.721318 ACTAGATGAAATGAAAGGGTAAGCA 58.279 36.000 0.00 0.00 0.00 3.91
1513 4107 1.384989 GGGCTAGCTACGAGTGAGCA 61.385 60.000 15.72 0.00 42.69 4.26
1514 4108 0.248702 GGCTAGCTACGAGTGAGCAC 60.249 60.000 15.72 0.00 42.69 4.40
1547 4141 6.194796 TCCATGCTGTTGAATAAAAGCTAC 57.805 37.500 4.08 0.00 36.60 3.58
1554 4148 4.817464 TGTTGAATAAAAGCTACCACGTGT 59.183 37.500 15.65 5.35 0.00 4.49
1593 4194 5.905733 CGTGTATACAGTACGTACATGGAAG 59.094 44.000 26.55 11.48 33.71 3.46
1609 4210 5.590259 ACATGGAAGGAAATAAAGTGGATCG 59.410 40.000 0.00 0.00 0.00 3.69
1610 4211 5.174037 TGGAAGGAAATAAAGTGGATCGT 57.826 39.130 0.00 0.00 0.00 3.73
1611 4212 5.566469 TGGAAGGAAATAAAGTGGATCGTT 58.434 37.500 0.00 0.00 0.00 3.85
1619 4236 7.812669 GGAAATAAAGTGGATCGTTTTCATGTT 59.187 33.333 0.00 0.00 0.00 2.71
1633 4250 8.622157 TCGTTTTCATGTTTGGATTTTACTACA 58.378 29.630 0.00 0.00 0.00 2.74
1666 4283 2.798976 CCAATACATGGGCGGATTTG 57.201 50.000 0.00 0.00 46.27 2.32
1667 4284 1.340889 CCAATACATGGGCGGATTTGG 59.659 52.381 0.00 0.00 46.27 3.28
1668 4285 1.340889 CAATACATGGGCGGATTTGGG 59.659 52.381 0.00 0.00 0.00 4.12
1669 4286 0.827507 ATACATGGGCGGATTTGGGC 60.828 55.000 0.00 0.00 0.00 5.36
1693 4310 2.044452 GCAGCCCAGGCCATATTTC 58.956 57.895 5.01 0.00 43.17 2.17
1695 4312 0.179020 CAGCCCAGGCCATATTTCGA 60.179 55.000 5.01 0.00 43.17 3.71
1705 4322 5.687285 CAGGCCATATTTCGAATTTGCTAAC 59.313 40.000 5.01 0.00 0.00 2.34
1710 4327 7.065894 CCATATTTCGAATTTGCTAACTCTCG 58.934 38.462 0.00 3.56 0.00 4.04
1711 4328 7.254455 CCATATTTCGAATTTGCTAACTCTCGT 60.254 37.037 0.00 0.00 0.00 4.18
1712 4329 8.752254 CATATTTCGAATTTGCTAACTCTCGTA 58.248 33.333 0.00 0.00 0.00 3.43
1713 4330 6.385537 TTTCGAATTTGCTAACTCTCGTAC 57.614 37.500 0.00 0.00 0.00 3.67
1714 4331 4.093514 TCGAATTTGCTAACTCTCGTACG 58.906 43.478 9.53 9.53 0.00 3.67
1724 4341 6.365518 TGCTAACTCTCGTACGTCTATATGAG 59.634 42.308 16.05 13.33 38.89 2.90
1733 4350 8.424274 TCGTACGTCTATATGAGAACTAACAA 57.576 34.615 16.05 0.00 35.37 2.83
1734 4351 8.882736 TCGTACGTCTATATGAGAACTAACAAA 58.117 33.333 16.05 0.00 35.37 2.83
1735 4352 9.156156 CGTACGTCTATATGAGAACTAACAAAG 57.844 37.037 7.22 0.00 35.37 2.77
1736 4353 7.988904 ACGTCTATATGAGAACTAACAAAGC 57.011 36.000 0.00 0.00 35.37 3.51
1738 4355 7.147880 ACGTCTATATGAGAACTAACAAAGCCT 60.148 37.037 0.00 0.00 35.37 4.58
1739 4356 7.380065 CGTCTATATGAGAACTAACAAAGCCTC 59.620 40.741 0.00 0.00 35.37 4.70
1740 4357 8.198109 GTCTATATGAGAACTAACAAAGCCTCA 58.802 37.037 0.00 0.00 40.38 3.86
1752 4431 4.469657 ACAAAGCCTCATCTAAAACCACA 58.530 39.130 0.00 0.00 0.00 4.17
1754 4433 5.221244 ACAAAGCCTCATCTAAAACCACAAC 60.221 40.000 0.00 0.00 0.00 3.32
1756 4435 3.821033 AGCCTCATCTAAAACCACAACAC 59.179 43.478 0.00 0.00 0.00 3.32
1764 4443 8.447833 TCATCTAAAACCACAACACGAATTATC 58.552 33.333 0.00 0.00 0.00 1.75
1771 4450 4.083749 CCACAACACGAATTATCAAACGGA 60.084 41.667 0.00 0.00 0.00 4.69
1772 4451 4.843984 CACAACACGAATTATCAAACGGAC 59.156 41.667 0.00 0.00 0.00 4.79
1773 4452 4.512198 ACAACACGAATTATCAAACGGACA 59.488 37.500 0.00 0.00 0.00 4.02
1777 4456 4.625742 CACGAATTATCAAACGGACAGAGT 59.374 41.667 0.00 0.00 0.00 3.24
1792 4471 7.782049 ACGGACAGAGTAGATCATTTGATTAA 58.218 34.615 0.00 0.00 34.37 1.40
1795 4474 9.995003 GGACAGAGTAGATCATTTGATTAATCT 57.005 33.333 16.24 0.00 34.37 2.40
1819 4498 8.046708 TCTAACAATAAAGAGCTAGCATTTCCA 58.953 33.333 18.83 4.13 0.00 3.53
1820 4499 7.651027 AACAATAAAGAGCTAGCATTTCCAT 57.349 32.000 18.83 6.24 0.00 3.41
1821 4500 7.035840 ACAATAAAGAGCTAGCATTTCCATG 57.964 36.000 18.83 16.62 0.00 3.66
1822 4501 6.040166 ACAATAAAGAGCTAGCATTTCCATGG 59.960 38.462 18.83 4.97 0.00 3.66
1828 4508 3.448660 AGCTAGCATTTCCATGGAAAACC 59.551 43.478 36.88 29.16 45.60 3.27
1835 4515 3.415457 TTCCATGGAAAACCAAATGGC 57.585 42.857 25.13 0.00 39.58 4.40
1838 4518 2.336667 CATGGAAAACCAAATGGCGTC 58.663 47.619 0.00 0.00 39.32 5.19
1857 4537 3.610585 CGTCGGAGCTAGATGAGAATTCC 60.611 52.174 0.65 0.00 0.00 3.01
1858 4538 3.319405 GTCGGAGCTAGATGAGAATTCCA 59.681 47.826 0.65 0.28 0.00 3.53
1859 4539 3.571828 TCGGAGCTAGATGAGAATTCCAG 59.428 47.826 0.65 0.00 0.00 3.86
1863 4543 6.532826 GGAGCTAGATGAGAATTCCAGAATT 58.467 40.000 5.32 5.32 43.14 2.17
1891 4571 8.964476 TTAATTCTCATTTACTCCATCTGTCC 57.036 34.615 0.00 0.00 0.00 4.02
1892 4572 5.359194 TTCTCATTTACTCCATCTGTCCC 57.641 43.478 0.00 0.00 0.00 4.46
1893 4573 4.361783 TCTCATTTACTCCATCTGTCCCA 58.638 43.478 0.00 0.00 0.00 4.37
1894 4574 4.782691 TCTCATTTACTCCATCTGTCCCAA 59.217 41.667 0.00 0.00 0.00 4.12
1895 4575 4.843728 TCATTTACTCCATCTGTCCCAAC 58.156 43.478 0.00 0.00 0.00 3.77
1896 4576 3.328382 TTTACTCCATCTGTCCCAACG 57.672 47.619 0.00 0.00 0.00 4.10
1897 4577 1.933021 TACTCCATCTGTCCCAACGT 58.067 50.000 0.00 0.00 0.00 3.99
1898 4578 1.933021 ACTCCATCTGTCCCAACGTA 58.067 50.000 0.00 0.00 0.00 3.57
1899 4579 2.253610 ACTCCATCTGTCCCAACGTAA 58.746 47.619 0.00 0.00 0.00 3.18
1900 4580 2.838202 ACTCCATCTGTCCCAACGTAAT 59.162 45.455 0.00 0.00 0.00 1.89
1901 4581 3.263425 ACTCCATCTGTCCCAACGTAATT 59.737 43.478 0.00 0.00 0.00 1.40
1902 4582 3.869065 TCCATCTGTCCCAACGTAATTC 58.131 45.455 0.00 0.00 0.00 2.17
1903 4583 3.262151 TCCATCTGTCCCAACGTAATTCA 59.738 43.478 0.00 0.00 0.00 2.57
1904 4584 4.080582 TCCATCTGTCCCAACGTAATTCAT 60.081 41.667 0.00 0.00 0.00 2.57
1905 4585 4.273480 CCATCTGTCCCAACGTAATTCATC 59.727 45.833 0.00 0.00 0.00 2.92
1906 4586 4.819105 TCTGTCCCAACGTAATTCATCT 57.181 40.909 0.00 0.00 0.00 2.90
1907 4587 5.160607 TCTGTCCCAACGTAATTCATCTT 57.839 39.130 0.00 0.00 0.00 2.40
1908 4588 5.556915 TCTGTCCCAACGTAATTCATCTTT 58.443 37.500 0.00 0.00 0.00 2.52
1909 4589 6.001460 TCTGTCCCAACGTAATTCATCTTTT 58.999 36.000 0.00 0.00 0.00 2.27
1910 4590 6.148811 TCTGTCCCAACGTAATTCATCTTTTC 59.851 38.462 0.00 0.00 0.00 2.29
1911 4591 5.765677 TGTCCCAACGTAATTCATCTTTTCA 59.234 36.000 0.00 0.00 0.00 2.69
1912 4592 6.263392 TGTCCCAACGTAATTCATCTTTTCAA 59.737 34.615 0.00 0.00 0.00 2.69
1913 4593 7.142680 GTCCCAACGTAATTCATCTTTTCAAA 58.857 34.615 0.00 0.00 0.00 2.69
1914 4594 7.114388 GTCCCAACGTAATTCATCTTTTCAAAC 59.886 37.037 0.00 0.00 0.00 2.93
1915 4595 7.013846 TCCCAACGTAATTCATCTTTTCAAACT 59.986 33.333 0.00 0.00 0.00 2.66
1916 4596 8.293867 CCCAACGTAATTCATCTTTTCAAACTA 58.706 33.333 0.00 0.00 0.00 2.24
1917 4597 9.113876 CCAACGTAATTCATCTTTTCAAACTAC 57.886 33.333 0.00 0.00 0.00 2.73
1918 4598 9.658475 CAACGTAATTCATCTTTTCAAACTACA 57.342 29.630 0.00 0.00 0.00 2.74
1955 4635 9.847224 AAAAAGTATTACTTCCTCTGTCTCAAA 57.153 29.630 9.45 0.00 37.47 2.69
1956 4636 9.847224 AAAAGTATTACTTCCTCTGTCTCAAAA 57.153 29.630 9.45 0.00 37.47 2.44
1962 4642 8.833231 TTACTTCCTCTGTCTCAAAATAAGTG 57.167 34.615 0.00 0.00 0.00 3.16
1963 4643 7.067496 ACTTCCTCTGTCTCAAAATAAGTGA 57.933 36.000 0.00 0.00 0.00 3.41
1964 4644 7.684529 ACTTCCTCTGTCTCAAAATAAGTGAT 58.315 34.615 0.00 0.00 0.00 3.06
1965 4645 8.160106 ACTTCCTCTGTCTCAAAATAAGTGATT 58.840 33.333 0.00 0.00 0.00 2.57
1966 4646 8.553459 TTCCTCTGTCTCAAAATAAGTGATTC 57.447 34.615 0.00 0.00 0.00 2.52
1967 4647 7.679783 TCCTCTGTCTCAAAATAAGTGATTCA 58.320 34.615 0.00 0.00 0.00 2.57
1968 4648 8.156820 TCCTCTGTCTCAAAATAAGTGATTCAA 58.843 33.333 0.00 0.00 0.00 2.69
1969 4649 8.233190 CCTCTGTCTCAAAATAAGTGATTCAAC 58.767 37.037 0.00 0.00 0.00 3.18
1970 4650 8.908786 TCTGTCTCAAAATAAGTGATTCAACT 57.091 30.769 0.00 0.00 0.00 3.16
1971 4651 9.342308 TCTGTCTCAAAATAAGTGATTCAACTT 57.658 29.630 0.00 0.00 42.89 2.66
1972 4652 9.956720 CTGTCTCAAAATAAGTGATTCAACTTT 57.043 29.630 6.76 0.00 40.77 2.66
1973 4653 9.734620 TGTCTCAAAATAAGTGATTCAACTTTG 57.265 29.630 6.76 4.71 40.77 2.77
1974 4654 9.736023 GTCTCAAAATAAGTGATTCAACTTTGT 57.264 29.630 6.76 0.00 40.77 2.83
1981 4661 9.561069 AATAAGTGATTCAACTTTGTAGTGACT 57.439 29.630 0.00 0.00 40.77 3.41
1982 4662 7.865706 AAGTGATTCAACTTTGTAGTGACTT 57.134 32.000 0.00 0.00 37.05 3.01
1983 4663 7.865706 AGTGATTCAACTTTGTAGTGACTTT 57.134 32.000 0.00 0.00 34.01 2.66
1984 4664 7.697691 AGTGATTCAACTTTGTAGTGACTTTG 58.302 34.615 0.00 0.00 34.01 2.77
1985 4665 7.336931 AGTGATTCAACTTTGTAGTGACTTTGT 59.663 33.333 0.00 0.00 34.01 2.83
1986 4666 8.609176 GTGATTCAACTTTGTAGTGACTTTGTA 58.391 33.333 0.00 0.00 34.01 2.41
1987 4667 9.337396 TGATTCAACTTTGTAGTGACTTTGTAT 57.663 29.630 0.00 0.00 34.01 2.29
2024 4704 9.758651 ACAAACTTAAGTCATTTATTTTGGGAC 57.241 29.630 8.95 0.00 33.26 4.46
2025 4705 9.981114 CAAACTTAAGTCATTTATTTTGGGACT 57.019 29.630 8.95 0.00 40.33 3.85
2026 4706 9.981114 AAACTTAAGTCATTTATTTTGGGACTG 57.019 29.630 8.95 0.00 38.71 3.51
2027 4707 8.934023 ACTTAAGTCATTTATTTTGGGACTGA 57.066 30.769 1.12 0.00 38.71 3.41
2028 4708 9.014297 ACTTAAGTCATTTATTTTGGGACTGAG 57.986 33.333 1.12 0.00 38.71 3.35
2029 4709 6.840780 AAGTCATTTATTTTGGGACTGAGG 57.159 37.500 0.00 0.00 38.71 3.86
2030 4710 5.264395 AGTCATTTATTTTGGGACTGAGGG 58.736 41.667 0.00 0.00 37.43 4.30
2031 4711 5.015178 AGTCATTTATTTTGGGACTGAGGGA 59.985 40.000 0.00 0.00 37.43 4.20
2032 4712 5.358160 GTCATTTATTTTGGGACTGAGGGAG 59.642 44.000 0.00 0.00 0.00 4.30
2033 4713 5.015178 TCATTTATTTTGGGACTGAGGGAGT 59.985 40.000 0.00 0.00 37.76 3.85
2034 4714 6.216662 TCATTTATTTTGGGACTGAGGGAGTA 59.783 38.462 0.00 0.00 33.83 2.59
2035 4715 5.693769 TTATTTTGGGACTGAGGGAGTAG 57.306 43.478 0.00 0.00 33.83 2.57
2036 4716 3.269592 TTTTGGGACTGAGGGAGTAGA 57.730 47.619 0.00 0.00 33.83 2.59
2037 4717 3.491766 TTTGGGACTGAGGGAGTAGAT 57.508 47.619 0.00 0.00 33.83 1.98
2047 4727 3.073798 TGAGGGAGTAGATGAGAGCTAGG 59.926 52.174 0.00 0.00 0.00 3.02
2052 4732 4.277423 GGAGTAGATGAGAGCTAGGAACAC 59.723 50.000 0.00 0.00 0.00 3.32
2060 4740 4.113354 GAGAGCTAGGAACACCGTTAATG 58.887 47.826 0.00 0.00 0.00 1.90
2066 4746 5.390567 GCTAGGAACACCGTTAATGTTTCTG 60.391 44.000 10.33 3.88 44.15 3.02
2078 4758 6.347725 CGTTAATGTTTCTGGTCTTTCTCTGG 60.348 42.308 0.00 0.00 0.00 3.86
2079 4759 2.851195 TGTTTCTGGTCTTTCTCTGGC 58.149 47.619 0.00 0.00 0.00 4.85
2080 4760 1.801178 GTTTCTGGTCTTTCTCTGGCG 59.199 52.381 0.00 0.00 0.00 5.69
2081 4761 0.320771 TTCTGGTCTTTCTCTGGCGC 60.321 55.000 0.00 0.00 0.00 6.53
2082 4762 1.188219 TCTGGTCTTTCTCTGGCGCT 61.188 55.000 7.64 0.00 0.00 5.92
2083 4763 0.321122 CTGGTCTTTCTCTGGCGCTT 60.321 55.000 7.64 0.00 0.00 4.68
2084 4764 0.320771 TGGTCTTTCTCTGGCGCTTC 60.321 55.000 7.64 0.00 0.00 3.86
2085 4765 0.036858 GGTCTTTCTCTGGCGCTTCT 60.037 55.000 7.64 0.00 0.00 2.85
2086 4766 1.074752 GTCTTTCTCTGGCGCTTCTG 58.925 55.000 7.64 0.00 0.00 3.02
2087 4767 0.681733 TCTTTCTCTGGCGCTTCTGT 59.318 50.000 7.64 0.00 0.00 3.41
2105 4785 4.344865 GAAACAGGGGCAGCCGGA 62.345 66.667 5.05 0.00 0.00 5.14
2190 4897 0.948678 TAACAACGGAAACAGCCAGC 59.051 50.000 0.00 0.00 0.00 4.85
2191 4898 1.734388 AACAACGGAAACAGCCAGCC 61.734 55.000 0.00 0.00 0.00 4.85
2192 4899 2.192861 CAACGGAAACAGCCAGCCA 61.193 57.895 0.00 0.00 0.00 4.75
2193 4900 1.898574 AACGGAAACAGCCAGCCAG 60.899 57.895 0.00 0.00 0.00 4.85
2248 4955 1.398451 CGCCAGTCGTTCACAAATCAC 60.398 52.381 0.00 0.00 0.00 3.06
2250 4957 2.349817 GCCAGTCGTTCACAAATCACAG 60.350 50.000 0.00 0.00 0.00 3.66
2274 4981 2.285083 CCGCCGATTCCTTTCATAACA 58.715 47.619 0.00 0.00 0.00 2.41
2293 5000 7.820386 TCATAACAAAACTAATCCTGAAGCGTA 59.180 33.333 0.00 0.00 0.00 4.42
2305 5012 1.201343 GAAGCGTAGAATCGTCAGGC 58.799 55.000 0.00 0.00 0.00 4.85
2311 5018 1.735376 TAGAATCGTCAGGCCCGAGC 61.735 60.000 0.00 0.00 37.81 5.03
2333 5040 2.439245 GACTTGGGGTTGGGGGAC 59.561 66.667 0.00 0.00 0.00 4.46
2339 5046 4.678743 GGGTTGGGGGACTGCACC 62.679 72.222 0.00 0.00 36.60 5.01
2340 5047 3.897122 GGTTGGGGGACTGCACCA 61.897 66.667 0.00 0.00 40.36 4.17
2341 5048 2.197324 GTTGGGGGACTGCACCAA 59.803 61.111 0.00 0.00 40.36 3.67
2342 5049 1.903404 GTTGGGGGACTGCACCAAG 60.903 63.158 4.14 0.00 44.27 3.61
2343 5050 2.081787 TTGGGGGACTGCACCAAGA 61.082 57.895 0.00 0.00 40.36 3.02
2344 5051 2.034221 GGGGGACTGCACCAAGAC 59.966 66.667 0.00 0.00 40.36 3.01
2345 5052 2.358737 GGGGACTGCACCAAGACG 60.359 66.667 0.00 0.00 37.60 4.18
2346 5053 2.426023 GGGACTGCACCAAGACGT 59.574 61.111 0.00 0.00 0.00 4.34
2347 5054 1.668151 GGGACTGCACCAAGACGTC 60.668 63.158 7.70 7.70 0.00 4.34
2348 5055 2.022129 GGACTGCACCAAGACGTCG 61.022 63.158 10.46 0.00 0.00 5.12
2349 5056 2.658707 GACTGCACCAAGACGTCGC 61.659 63.158 10.46 7.69 0.00 5.19
2350 5057 2.356313 CTGCACCAAGACGTCGCT 60.356 61.111 10.46 0.00 0.00 4.93
2351 5058 2.355837 TGCACCAAGACGTCGCTC 60.356 61.111 10.46 0.00 0.00 5.03
2352 5059 2.049063 GCACCAAGACGTCGCTCT 60.049 61.111 10.46 0.00 0.00 4.09
2353 5060 2.375766 GCACCAAGACGTCGCTCTG 61.376 63.158 10.46 6.47 0.00 3.35
2354 5061 1.734477 CACCAAGACGTCGCTCTGG 60.734 63.158 20.46 20.46 0.00 3.86
2355 5062 1.901948 ACCAAGACGTCGCTCTGGA 60.902 57.895 25.72 0.00 0.00 3.86
2356 5063 1.153939 CCAAGACGTCGCTCTGGAG 60.154 63.158 18.49 0.00 0.00 3.86
2357 5064 1.587043 CCAAGACGTCGCTCTGGAGA 61.587 60.000 18.49 0.00 0.00 3.71
2358 5065 0.453793 CAAGACGTCGCTCTGGAGAT 59.546 55.000 10.46 0.00 0.00 2.75
2359 5066 1.671328 CAAGACGTCGCTCTGGAGATA 59.329 52.381 10.46 0.00 0.00 1.98
2360 5067 2.264005 AGACGTCGCTCTGGAGATAT 57.736 50.000 10.46 0.00 0.00 1.63
2361 5068 2.577700 AGACGTCGCTCTGGAGATATT 58.422 47.619 10.46 0.00 0.00 1.28
2362 5069 2.292016 AGACGTCGCTCTGGAGATATTG 59.708 50.000 10.46 0.00 0.00 1.90
2363 5070 2.290916 GACGTCGCTCTGGAGATATTGA 59.709 50.000 0.00 0.00 0.00 2.57
2364 5071 2.887783 ACGTCGCTCTGGAGATATTGAT 59.112 45.455 1.35 0.00 0.00 2.57
2365 5072 3.057876 ACGTCGCTCTGGAGATATTGATC 60.058 47.826 1.35 0.00 0.00 2.92
2366 5073 3.190327 CGTCGCTCTGGAGATATTGATCT 59.810 47.826 1.35 0.00 45.59 2.75
2367 5074 4.320861 CGTCGCTCTGGAGATATTGATCTT 60.321 45.833 1.35 0.00 42.80 2.40
2368 5075 5.106515 CGTCGCTCTGGAGATATTGATCTTA 60.107 44.000 1.35 0.00 42.80 2.10
2369 5076 6.090129 GTCGCTCTGGAGATATTGATCTTAC 58.910 44.000 1.35 0.00 42.80 2.34
2370 5077 6.007076 TCGCTCTGGAGATATTGATCTTACT 58.993 40.000 1.35 0.00 42.80 2.24
2371 5078 7.119992 GTCGCTCTGGAGATATTGATCTTACTA 59.880 40.741 1.35 0.00 42.80 1.82
2372 5079 7.335673 TCGCTCTGGAGATATTGATCTTACTAG 59.664 40.741 1.35 0.00 42.80 2.57
2373 5080 7.335673 CGCTCTGGAGATATTGATCTTACTAGA 59.664 40.741 0.00 0.00 42.80 2.43
2374 5081 8.458843 GCTCTGGAGATATTGATCTTACTAGAC 58.541 40.741 0.00 0.00 42.80 2.59
2375 5082 8.871629 TCTGGAGATATTGATCTTACTAGACC 57.128 38.462 0.00 0.00 42.80 3.85
2376 5083 7.891183 TCTGGAGATATTGATCTTACTAGACCC 59.109 40.741 0.00 0.00 42.80 4.46
2377 5084 6.659668 TGGAGATATTGATCTTACTAGACCCG 59.340 42.308 0.00 0.00 42.80 5.28
2378 5085 6.660094 GGAGATATTGATCTTACTAGACCCGT 59.340 42.308 0.00 0.00 42.80 5.28
2379 5086 7.148205 GGAGATATTGATCTTACTAGACCCGTC 60.148 44.444 0.00 0.00 42.80 4.79
2380 5087 7.232188 AGATATTGATCTTACTAGACCCGTCA 58.768 38.462 0.00 0.00 39.56 4.35
2381 5088 7.891183 AGATATTGATCTTACTAGACCCGTCAT 59.109 37.037 0.00 0.00 39.56 3.06
2382 5089 5.769484 TTGATCTTACTAGACCCGTCATC 57.231 43.478 0.00 0.00 31.99 2.92
2383 5090 5.050126 TGATCTTACTAGACCCGTCATCT 57.950 43.478 0.00 0.00 31.99 2.90
2384 5091 5.446860 TGATCTTACTAGACCCGTCATCTT 58.553 41.667 0.00 0.00 31.99 2.40
2385 5092 5.531659 TGATCTTACTAGACCCGTCATCTTC 59.468 44.000 0.00 0.00 31.99 2.87
2386 5093 5.113446 TCTTACTAGACCCGTCATCTTCT 57.887 43.478 0.00 0.00 0.00 2.85
2387 5094 5.507637 TCTTACTAGACCCGTCATCTTCTT 58.492 41.667 0.00 0.00 0.00 2.52
2388 5095 5.589452 TCTTACTAGACCCGTCATCTTCTTC 59.411 44.000 0.00 0.00 0.00 2.87
2389 5096 3.970842 ACTAGACCCGTCATCTTCTTCT 58.029 45.455 0.00 0.00 0.00 2.85
2390 5097 3.697045 ACTAGACCCGTCATCTTCTTCTG 59.303 47.826 0.00 0.00 0.00 3.02
2391 5098 1.827969 AGACCCGTCATCTTCTTCTGG 59.172 52.381 0.00 0.00 0.00 3.86
2392 5099 1.825474 GACCCGTCATCTTCTTCTGGA 59.175 52.381 0.00 0.00 0.00 3.86
2393 5100 2.432510 GACCCGTCATCTTCTTCTGGAT 59.567 50.000 0.00 0.00 0.00 3.41
2394 5101 2.169352 ACCCGTCATCTTCTTCTGGATG 59.831 50.000 0.00 0.00 40.23 3.51
2395 5102 2.208431 CCGTCATCTTCTTCTGGATGC 58.792 52.381 0.00 0.00 39.14 3.91
2396 5103 2.419159 CCGTCATCTTCTTCTGGATGCA 60.419 50.000 0.00 0.00 39.14 3.96
2397 5104 3.464907 CGTCATCTTCTTCTGGATGCAT 58.535 45.455 0.00 0.00 39.14 3.96
2398 5105 4.502087 CCGTCATCTTCTTCTGGATGCATA 60.502 45.833 0.00 0.00 39.14 3.14
2399 5106 5.236282 CGTCATCTTCTTCTGGATGCATAT 58.764 41.667 0.00 0.00 39.14 1.78
2400 5107 5.120363 CGTCATCTTCTTCTGGATGCATATG 59.880 44.000 0.00 0.00 39.14 1.78
2401 5108 5.411977 GTCATCTTCTTCTGGATGCATATGG 59.588 44.000 0.00 0.00 39.14 2.74
2402 5109 4.362470 TCTTCTTCTGGATGCATATGGG 57.638 45.455 0.00 0.00 0.00 4.00
2403 5110 3.073503 TCTTCTTCTGGATGCATATGGGG 59.926 47.826 0.00 0.00 0.00 4.96
2404 5111 1.074405 TCTTCTGGATGCATATGGGGC 59.926 52.381 0.00 0.00 0.00 5.80
2405 5112 0.250858 TTCTGGATGCATATGGGGCG 60.251 55.000 0.00 0.00 0.00 6.13
2406 5113 1.676635 CTGGATGCATATGGGGCGG 60.677 63.158 0.00 0.00 0.00 6.13
2407 5114 2.361610 GGATGCATATGGGGCGGG 60.362 66.667 0.00 0.00 0.00 6.13
2408 5115 2.436109 GATGCATATGGGGCGGGT 59.564 61.111 0.00 0.00 0.00 5.28
2409 5116 1.675641 GATGCATATGGGGCGGGTC 60.676 63.158 0.00 0.00 0.00 4.46
2410 5117 2.410322 GATGCATATGGGGCGGGTCA 62.410 60.000 0.00 0.00 0.00 4.02
2411 5118 2.005606 ATGCATATGGGGCGGGTCAA 62.006 55.000 0.00 0.00 0.00 3.18
2412 5119 1.454847 GCATATGGGGCGGGTCAAA 60.455 57.895 4.56 0.00 0.00 2.69
2413 5120 1.734388 GCATATGGGGCGGGTCAAAC 61.734 60.000 4.56 0.00 0.00 2.93
2414 5121 0.106719 CATATGGGGCGGGTCAAACT 60.107 55.000 0.00 0.00 0.00 2.66
2415 5122 0.629058 ATATGGGGCGGGTCAAACTT 59.371 50.000 0.00 0.00 0.00 2.66
2416 5123 0.406361 TATGGGGCGGGTCAAACTTT 59.594 50.000 0.00 0.00 0.00 2.66
2417 5124 1.184970 ATGGGGCGGGTCAAACTTTG 61.185 55.000 0.00 0.00 0.00 2.77
2418 5125 2.338620 GGGCGGGTCAAACTTTGC 59.661 61.111 0.00 0.00 0.00 3.68
2419 5126 2.050442 GGCGGGTCAAACTTTGCG 60.050 61.111 0.00 0.00 0.00 4.85
2420 5127 2.050442 GCGGGTCAAACTTTGCGG 60.050 61.111 0.00 0.00 0.00 5.69
2421 5128 2.050442 CGGGTCAAACTTTGCGGC 60.050 61.111 0.00 0.00 0.00 6.53
2422 5129 2.338620 GGGTCAAACTTTGCGGCC 59.661 61.111 0.00 0.00 0.00 6.13
2423 5130 2.338620 GGTCAAACTTTGCGGCCC 59.661 61.111 0.00 0.00 0.00 5.80
2424 5131 2.050442 GTCAAACTTTGCGGCCCG 60.050 61.111 0.00 0.00 0.00 6.13
2425 5132 2.517402 TCAAACTTTGCGGCCCGT 60.517 55.556 4.45 0.00 0.00 5.28
2426 5133 2.050442 CAAACTTTGCGGCCCGTC 60.050 61.111 4.45 0.00 0.00 4.79
2427 5134 2.203294 AAACTTTGCGGCCCGTCT 60.203 55.556 4.45 0.00 0.00 4.18
2428 5135 2.258726 AAACTTTGCGGCCCGTCTC 61.259 57.895 4.45 0.00 0.00 3.36
2429 5136 2.676163 AAACTTTGCGGCCCGTCTCT 62.676 55.000 4.45 0.00 0.00 3.10
2430 5137 1.823169 AACTTTGCGGCCCGTCTCTA 61.823 55.000 4.45 0.00 0.00 2.43
2431 5138 1.144057 CTTTGCGGCCCGTCTCTAT 59.856 57.895 4.45 0.00 0.00 1.98
2432 5139 0.876342 CTTTGCGGCCCGTCTCTATC 60.876 60.000 4.45 0.00 0.00 2.08
2433 5140 2.306255 TTTGCGGCCCGTCTCTATCC 62.306 60.000 4.45 0.00 0.00 2.59
2434 5141 3.224324 GCGGCCCGTCTCTATCCA 61.224 66.667 4.45 0.00 0.00 3.41
2435 5142 2.792947 GCGGCCCGTCTCTATCCAA 61.793 63.158 4.45 0.00 0.00 3.53
2436 5143 1.364171 CGGCCCGTCTCTATCCAAG 59.636 63.158 0.00 0.00 0.00 3.61
2437 5144 1.069935 GGCCCGTCTCTATCCAAGC 59.930 63.158 0.00 0.00 0.00 4.01
2438 5145 1.069935 GCCCGTCTCTATCCAAGCC 59.930 63.158 0.00 0.00 0.00 4.35
2439 5146 1.686325 GCCCGTCTCTATCCAAGCCA 61.686 60.000 0.00 0.00 0.00 4.75
2440 5147 0.830648 CCCGTCTCTATCCAAGCCAA 59.169 55.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 8.041919 AGCCTTTAGAGACAAGGTTTTATACTC 58.958 37.037 0.83 0.00 42.68 2.59
65 66 9.011095 GTTTAGCCTTTAGAGACAAGGTTTTAT 57.989 33.333 0.83 0.00 42.68 1.40
82 86 1.359168 AAGTCGAGGGGTTTAGCCTT 58.641 50.000 0.00 0.00 37.43 4.35
85 89 3.538634 ACATAAGTCGAGGGGTTTAGC 57.461 47.619 0.00 0.00 0.00 3.09
98 102 1.213296 CCCCTGGTGCCTACATAAGT 58.787 55.000 0.00 0.00 0.00 2.24
138 142 6.464465 GGCATGTTATCCCTAGTTGTAGTCAT 60.464 42.308 0.00 0.00 0.00 3.06
139 143 5.163343 GGCATGTTATCCCTAGTTGTAGTCA 60.163 44.000 0.00 0.00 0.00 3.41
179 2711 5.911280 CGAAGACTTGTCGTACACTTTAAGA 59.089 40.000 0.00 0.00 33.80 2.10
227 2759 1.004560 CACACATGCCCTGTCTCGT 60.005 57.895 0.00 0.00 35.29 4.18
230 2762 2.034687 GCCACACATGCCCTGTCT 59.965 61.111 0.00 0.00 35.29 3.41
301 2844 2.166459 GACGATGTCCTGAATCAGTGGA 59.834 50.000 9.63 0.00 0.00 4.02
307 2850 3.118956 ACCTGAAGACGATGTCCTGAATC 60.119 47.826 0.00 0.00 32.18 2.52
318 2861 1.629043 AAGCAGGTACCTGAAGACGA 58.371 50.000 40.26 0.00 46.30 4.20
323 2866 6.839134 TCATAGATCTAAAGCAGGTACCTGAA 59.161 38.462 40.26 22.16 46.30 3.02
329 2872 6.615617 ACTCCTCATAGATCTAAAGCAGGTA 58.384 40.000 6.52 0.83 0.00 3.08
330 2873 5.463154 ACTCCTCATAGATCTAAAGCAGGT 58.537 41.667 6.52 0.30 0.00 4.00
331 2874 6.041409 TGAACTCCTCATAGATCTAAAGCAGG 59.959 42.308 6.52 9.43 0.00 4.85
332 2875 7.048629 TGAACTCCTCATAGATCTAAAGCAG 57.951 40.000 6.52 5.80 0.00 4.24
338 2881 4.278669 GCCGTTGAACTCCTCATAGATCTA 59.721 45.833 4.57 4.57 32.78 1.98
398 2941 0.934496 CGGAAAGTCTTTGTGCACGA 59.066 50.000 13.13 7.71 0.00 4.35
406 2949 5.677567 TCTAAGAACAACCGGAAAGTCTTT 58.322 37.500 9.46 0.00 0.00 2.52
423 2967 2.234908 GAGCTGGCTTGACCTTCTAAGA 59.765 50.000 0.00 0.00 40.22 2.10
426 2970 1.552337 CTGAGCTGGCTTGACCTTCTA 59.448 52.381 0.00 0.00 40.22 2.10
452 2996 1.664965 GTGCCTCTGTCGTCGCTTT 60.665 57.895 0.00 0.00 0.00 3.51
453 2997 2.049063 GTGCCTCTGTCGTCGCTT 60.049 61.111 0.00 0.00 0.00 4.68
465 3009 1.476488 GAACAAACAGTTGGTGTGCCT 59.524 47.619 0.00 0.00 41.51 4.75
472 3016 2.426738 TGCCTTCAGAACAAACAGTTGG 59.573 45.455 0.00 0.00 41.51 3.77
475 3019 3.068590 CCATTGCCTTCAGAACAAACAGT 59.931 43.478 0.00 0.00 0.00 3.55
479 3023 2.364970 CCACCATTGCCTTCAGAACAAA 59.635 45.455 0.00 0.00 0.00 2.83
481 3025 1.133513 ACCACCATTGCCTTCAGAACA 60.134 47.619 0.00 0.00 0.00 3.18
496 3040 2.009774 CCGAGATCATCAACAACCACC 58.990 52.381 0.00 0.00 0.00 4.61
571 3115 9.860898 AAGAAAAGGATCCGATTTATCAAAAAG 57.139 29.630 15.78 0.00 0.00 2.27
577 3121 9.855021 TTTCAAAAGAAAAGGATCCGATTTATC 57.145 29.630 15.78 7.45 0.00 1.75
609 3154 2.616842 TCGGAAGTGGAGCAAGTTTTTC 59.383 45.455 0.00 0.00 0.00 2.29
610 3155 2.618709 CTCGGAAGTGGAGCAAGTTTTT 59.381 45.455 0.00 0.00 0.00 1.94
625 3170 6.761714 GCTACTGGAAGAAAAATATCTCGGAA 59.238 38.462 0.00 0.00 37.43 4.30
626 3171 6.127168 TGCTACTGGAAGAAAAATATCTCGGA 60.127 38.462 0.00 0.00 37.43 4.55
628 3173 7.721286 ATGCTACTGGAAGAAAAATATCTCG 57.279 36.000 0.00 0.00 37.43 4.04
644 3189 1.168407 CCGCCCCATGAATGCTACTG 61.168 60.000 0.00 0.00 0.00 2.74
647 3192 2.515398 CCCGCCCCATGAATGCTA 59.485 61.111 0.00 0.00 0.00 3.49
650 3195 2.442643 AAGCCCGCCCCATGAATG 60.443 61.111 0.00 0.00 0.00 2.67
690 3235 0.812014 TCGCAAGCGTCACTTTCCAA 60.812 50.000 14.57 0.00 36.04 3.53
721 3266 7.166691 CTAGTTAACTAGTTCTGCCACCTAA 57.833 40.000 27.67 0.00 40.72 2.69
910 3484 1.202915 TGTCTTGGATTTGCTGCTGGA 60.203 47.619 0.00 0.00 0.00 3.86
927 3501 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
928 3502 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
929 3503 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
930 3504 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
931 3505 2.031245 AGTTTGTGTGTGTGTGTGTGTG 60.031 45.455 0.00 0.00 0.00 3.82
932 3506 2.226330 AGTTTGTGTGTGTGTGTGTGT 58.774 42.857 0.00 0.00 0.00 3.72
933 3507 2.987413 AGTTTGTGTGTGTGTGTGTG 57.013 45.000 0.00 0.00 0.00 3.82
992 3567 1.432251 CTTACCGCCATCGTCGTCT 59.568 57.895 0.00 0.00 0.00 4.18
1294 3873 2.579787 CACGATCCTCGCCGTCAC 60.580 66.667 0.00 0.00 45.12 3.67
1296 3875 3.515286 TCCACGATCCTCGCCGTC 61.515 66.667 0.00 0.00 45.12 4.79
1381 3960 4.468689 GCCCTGCTGGTACCCGAC 62.469 72.222 10.07 0.00 36.04 4.79
1443 4022 4.790765 AGCTTGCTTACCCTTTCATTTC 57.209 40.909 0.00 0.00 0.00 2.17
1445 4024 5.509498 TCATAGCTTGCTTACCCTTTCATT 58.491 37.500 0.00 0.00 0.00 2.57
1446 4025 5.116084 TCATAGCTTGCTTACCCTTTCAT 57.884 39.130 0.00 0.00 0.00 2.57
1448 4027 6.992715 TCTTATCATAGCTTGCTTACCCTTTC 59.007 38.462 0.00 0.00 0.00 2.62
1456 4050 8.355913 GCCTTTTATTCTTATCATAGCTTGCTT 58.644 33.333 0.00 0.00 0.00 3.91
1460 4054 9.225436 GCTAGCCTTTTATTCTTATCATAGCTT 57.775 33.333 2.29 0.00 0.00 3.74
1490 4084 1.147824 ACTCGTAGCTAGCCCGCTA 59.852 57.895 12.13 0.76 41.30 4.26
1491 4085 2.124236 ACTCGTAGCTAGCCCGCT 60.124 61.111 12.13 2.72 43.83 5.52
1492 4086 2.026301 CACTCGTAGCTAGCCCGC 59.974 66.667 12.13 0.58 0.00 6.13
1493 4087 1.649815 CTCACTCGTAGCTAGCCCG 59.350 63.158 12.13 14.48 0.00 6.13
1494 4088 1.360911 GCTCACTCGTAGCTAGCCC 59.639 63.158 12.13 0.95 37.01 5.19
1495 4089 0.248702 GTGCTCACTCGTAGCTAGCC 60.249 60.000 12.13 0.00 40.73 3.93
1496 4090 0.736053 AGTGCTCACTCGTAGCTAGC 59.264 55.000 6.62 6.62 40.73 3.42
1497 4091 2.010497 TCAGTGCTCACTCGTAGCTAG 58.990 52.381 0.00 0.00 40.20 3.42
1513 4107 2.186243 ACAGCATGGATCAGTCTCAGT 58.814 47.619 0.00 0.00 43.62 3.41
1514 4108 2.937149 CAACAGCATGGATCAGTCTCAG 59.063 50.000 0.00 0.00 43.62 3.35
1547 4141 0.590682 TACAATGCAGCAACACGTGG 59.409 50.000 21.57 3.72 0.00 4.94
1554 4148 6.519353 GTATACACGTATACAATGCAGCAA 57.481 37.500 18.27 0.00 44.41 3.91
1593 4194 7.312899 ACATGAAAACGATCCACTTTATTTCC 58.687 34.615 0.00 0.00 0.00 3.13
1633 4250 9.777297 GCCCATGTATTGGTTCATAATAAATTT 57.223 29.630 0.00 0.00 44.83 1.82
1635 4252 7.309744 CCGCCCATGTATTGGTTCATAATAAAT 60.310 37.037 0.00 0.00 44.83 1.40
1650 4267 0.827507 GCCCAAATCCGCCCATGTAT 60.828 55.000 0.00 0.00 0.00 2.29
1652 4269 2.759560 GCCCAAATCCGCCCATGT 60.760 61.111 0.00 0.00 0.00 3.21
1653 4270 3.539791 GGCCCAAATCCGCCCATG 61.540 66.667 0.00 0.00 39.39 3.66
1675 4292 1.799258 CGAAATATGGCCTGGGCTGC 61.799 60.000 21.72 0.00 41.60 5.25
1676 4293 0.179020 TCGAAATATGGCCTGGGCTG 60.179 55.000 21.72 2.91 41.60 4.85
1677 4294 0.550914 TTCGAAATATGGCCTGGGCT 59.449 50.000 21.72 9.39 41.60 5.19
1678 4295 1.620822 ATTCGAAATATGGCCTGGGC 58.379 50.000 14.23 14.23 41.06 5.36
1679 4296 3.799917 GCAAATTCGAAATATGGCCTGGG 60.800 47.826 3.32 0.00 0.00 4.45
1680 4297 3.068590 AGCAAATTCGAAATATGGCCTGG 59.931 43.478 3.32 0.00 0.00 4.45
1681 4298 4.311816 AGCAAATTCGAAATATGGCCTG 57.688 40.909 3.32 0.00 0.00 4.85
1682 4299 5.594317 AGTTAGCAAATTCGAAATATGGCCT 59.406 36.000 3.32 0.00 0.00 5.19
1683 4300 5.831997 AGTTAGCAAATTCGAAATATGGCC 58.168 37.500 0.00 0.00 0.00 5.36
1684 4301 6.729187 AGAGTTAGCAAATTCGAAATATGGC 58.271 36.000 0.00 0.77 0.00 4.40
1685 4302 7.065894 CGAGAGTTAGCAAATTCGAAATATGG 58.934 38.462 0.00 0.00 0.00 2.74
1693 4310 3.850273 ACGTACGAGAGTTAGCAAATTCG 59.150 43.478 24.41 0.00 46.40 3.34
1695 4312 5.056894 AGACGTACGAGAGTTAGCAAATT 57.943 39.130 24.41 0.00 46.40 1.82
1705 4322 8.427012 GTTAGTTCTCATATAGACGTACGAGAG 58.573 40.741 24.41 15.15 32.51 3.20
1710 4327 8.956014 GCTTTGTTAGTTCTCATATAGACGTAC 58.044 37.037 0.00 0.00 32.51 3.67
1711 4328 8.133627 GGCTTTGTTAGTTCTCATATAGACGTA 58.866 37.037 0.00 0.00 32.51 3.57
1712 4329 6.979238 GGCTTTGTTAGTTCTCATATAGACGT 59.021 38.462 0.00 0.00 32.51 4.34
1713 4330 7.203910 AGGCTTTGTTAGTTCTCATATAGACG 58.796 38.462 0.00 0.00 32.51 4.18
1714 4331 8.198109 TGAGGCTTTGTTAGTTCTCATATAGAC 58.802 37.037 0.00 0.00 34.08 2.59
1724 4341 7.040686 TGGTTTTAGATGAGGCTTTGTTAGTTC 60.041 37.037 0.00 0.00 0.00 3.01
1733 4350 4.278419 GTGTTGTGGTTTTAGATGAGGCTT 59.722 41.667 0.00 0.00 0.00 4.35
1734 4351 3.821033 GTGTTGTGGTTTTAGATGAGGCT 59.179 43.478 0.00 0.00 0.00 4.58
1735 4352 3.364964 CGTGTTGTGGTTTTAGATGAGGC 60.365 47.826 0.00 0.00 0.00 4.70
1736 4353 4.062293 TCGTGTTGTGGTTTTAGATGAGG 58.938 43.478 0.00 0.00 0.00 3.86
1738 4355 6.627395 AATTCGTGTTGTGGTTTTAGATGA 57.373 33.333 0.00 0.00 0.00 2.92
1739 4356 8.233868 TGATAATTCGTGTTGTGGTTTTAGATG 58.766 33.333 0.00 0.00 0.00 2.90
1740 4357 8.330466 TGATAATTCGTGTTGTGGTTTTAGAT 57.670 30.769 0.00 0.00 0.00 1.98
1752 4431 4.992319 TCTGTCCGTTTGATAATTCGTGTT 59.008 37.500 0.00 0.00 0.00 3.32
1754 4433 4.625742 ACTCTGTCCGTTTGATAATTCGTG 59.374 41.667 0.00 0.00 0.00 4.35
1756 4435 6.263344 TCTACTCTGTCCGTTTGATAATTCG 58.737 40.000 0.00 0.00 0.00 3.34
1764 4443 5.869344 TCAAATGATCTACTCTGTCCGTTTG 59.131 40.000 0.00 0.00 0.00 2.93
1792 4471 9.061435 GGAAATGCTAGCTCTTTATTGTTAGAT 57.939 33.333 17.23 0.00 0.00 1.98
1795 4474 8.623903 CATGGAAATGCTAGCTCTTTATTGTTA 58.376 33.333 17.23 0.00 0.00 2.41
1799 4478 6.367983 TCCATGGAAATGCTAGCTCTTTATT 58.632 36.000 13.46 3.74 0.00 1.40
1801 4480 5.372343 TCCATGGAAATGCTAGCTCTTTA 57.628 39.130 13.46 2.73 0.00 1.85
1804 4483 3.939740 TTCCATGGAAATGCTAGCTCT 57.060 42.857 25.13 0.00 0.00 4.09
1806 4485 3.448660 GGTTTTCCATGGAAATGCTAGCT 59.551 43.478 34.67 0.00 42.71 3.32
1821 4500 0.388006 CCGACGCCATTTGGTTTTCC 60.388 55.000 0.00 0.00 41.14 3.13
1822 4501 0.594110 TCCGACGCCATTTGGTTTTC 59.406 50.000 0.00 0.00 37.57 2.29
1828 4508 0.179111 TCTAGCTCCGACGCCATTTG 60.179 55.000 0.00 0.00 0.00 2.32
1835 4515 3.560503 GAATTCTCATCTAGCTCCGACG 58.439 50.000 0.00 0.00 0.00 5.12
1838 4518 3.571828 TCTGGAATTCTCATCTAGCTCCG 59.428 47.826 5.23 0.00 0.00 4.63
1865 4545 9.396022 GGACAGATGGAGTAAATGAGAATTAAA 57.604 33.333 0.00 0.00 0.00 1.52
1866 4546 7.993183 GGGACAGATGGAGTAAATGAGAATTAA 59.007 37.037 0.00 0.00 0.00 1.40
1868 4548 6.069440 TGGGACAGATGGAGTAAATGAGAATT 60.069 38.462 0.00 0.00 0.00 2.17
1869 4549 5.429762 TGGGACAGATGGAGTAAATGAGAAT 59.570 40.000 0.00 0.00 0.00 2.40
1870 4550 4.782691 TGGGACAGATGGAGTAAATGAGAA 59.217 41.667 0.00 0.00 0.00 2.87
1871 4551 4.361783 TGGGACAGATGGAGTAAATGAGA 58.638 43.478 0.00 0.00 0.00 3.27
1872 4552 4.760530 TGGGACAGATGGAGTAAATGAG 57.239 45.455 0.00 0.00 0.00 2.90
1873 4553 4.622933 CGTTGGGACAGATGGAGTAAATGA 60.623 45.833 0.00 0.00 42.39 2.57
1874 4554 3.623060 CGTTGGGACAGATGGAGTAAATG 59.377 47.826 0.00 0.00 42.39 2.32
1875 4555 3.263425 ACGTTGGGACAGATGGAGTAAAT 59.737 43.478 0.00 0.00 42.39 1.40
1876 4556 2.635915 ACGTTGGGACAGATGGAGTAAA 59.364 45.455 0.00 0.00 42.39 2.01
1877 4557 2.253610 ACGTTGGGACAGATGGAGTAA 58.746 47.619 0.00 0.00 42.39 2.24
1878 4558 1.933021 ACGTTGGGACAGATGGAGTA 58.067 50.000 0.00 0.00 42.39 2.59
1879 4559 1.933021 TACGTTGGGACAGATGGAGT 58.067 50.000 0.00 0.00 42.39 3.85
1880 4560 3.543680 ATTACGTTGGGACAGATGGAG 57.456 47.619 0.00 0.00 42.39 3.86
1881 4561 3.262151 TGAATTACGTTGGGACAGATGGA 59.738 43.478 0.00 0.00 42.39 3.41
1882 4562 3.605634 TGAATTACGTTGGGACAGATGG 58.394 45.455 0.00 0.00 42.39 3.51
1883 4563 5.118990 AGATGAATTACGTTGGGACAGATG 58.881 41.667 0.00 0.00 42.39 2.90
1884 4564 5.359194 AGATGAATTACGTTGGGACAGAT 57.641 39.130 0.00 0.00 42.39 2.90
1885 4565 4.819105 AGATGAATTACGTTGGGACAGA 57.181 40.909 0.00 0.00 42.39 3.41
1886 4566 5.880054 AAAGATGAATTACGTTGGGACAG 57.120 39.130 0.00 0.00 42.39 3.51
1887 4567 5.765677 TGAAAAGATGAATTACGTTGGGACA 59.234 36.000 0.00 0.00 0.00 4.02
1888 4568 6.249035 TGAAAAGATGAATTACGTTGGGAC 57.751 37.500 0.00 0.00 0.00 4.46
1889 4569 6.885952 TTGAAAAGATGAATTACGTTGGGA 57.114 33.333 0.00 0.00 0.00 4.37
1890 4570 7.145323 AGTTTGAAAAGATGAATTACGTTGGG 58.855 34.615 0.00 0.00 0.00 4.12
1891 4571 9.113876 GTAGTTTGAAAAGATGAATTACGTTGG 57.886 33.333 0.00 0.00 0.00 3.77
1892 4572 9.658475 TGTAGTTTGAAAAGATGAATTACGTTG 57.342 29.630 0.00 0.00 0.00 4.10
1929 4609 9.847224 TTTGAGACAGAGGAAGTAATACTTTTT 57.153 29.630 7.14 0.00 38.80 1.94
1930 4610 9.847224 TTTTGAGACAGAGGAAGTAATACTTTT 57.153 29.630 7.14 0.00 38.80 2.27
1936 4616 9.442047 CACTTATTTTGAGACAGAGGAAGTAAT 57.558 33.333 0.00 0.00 0.00 1.89
1937 4617 8.647796 TCACTTATTTTGAGACAGAGGAAGTAA 58.352 33.333 0.00 0.00 0.00 2.24
1938 4618 8.190326 TCACTTATTTTGAGACAGAGGAAGTA 57.810 34.615 0.00 0.00 0.00 2.24
1939 4619 7.067496 TCACTTATTTTGAGACAGAGGAAGT 57.933 36.000 0.00 0.00 0.00 3.01
1940 4620 8.558973 AATCACTTATTTTGAGACAGAGGAAG 57.441 34.615 0.00 0.00 0.00 3.46
1941 4621 8.156820 TGAATCACTTATTTTGAGACAGAGGAA 58.843 33.333 0.00 0.00 0.00 3.36
1942 4622 7.679783 TGAATCACTTATTTTGAGACAGAGGA 58.320 34.615 0.00 0.00 0.00 3.71
1943 4623 7.912056 TGAATCACTTATTTTGAGACAGAGG 57.088 36.000 0.00 0.00 0.00 3.69
1944 4624 8.997323 AGTTGAATCACTTATTTTGAGACAGAG 58.003 33.333 0.00 0.00 0.00 3.35
1945 4625 8.908786 AGTTGAATCACTTATTTTGAGACAGA 57.091 30.769 0.00 0.00 0.00 3.41
1946 4626 9.956720 AAAGTTGAATCACTTATTTTGAGACAG 57.043 29.630 0.00 0.00 35.87 3.51
1947 4627 9.734620 CAAAGTTGAATCACTTATTTTGAGACA 57.265 29.630 0.00 0.00 35.87 3.41
1948 4628 9.736023 ACAAAGTTGAATCACTTATTTTGAGAC 57.264 29.630 7.92 0.00 35.87 3.36
1955 4635 9.561069 AGTCACTACAAAGTTGAATCACTTATT 57.439 29.630 0.00 0.00 35.87 1.40
1956 4636 9.561069 AAGTCACTACAAAGTTGAATCACTTAT 57.439 29.630 0.00 0.00 35.87 1.73
1957 4637 8.958119 AAGTCACTACAAAGTTGAATCACTTA 57.042 30.769 0.00 0.00 35.87 2.24
1958 4638 7.865706 AAGTCACTACAAAGTTGAATCACTT 57.134 32.000 0.00 0.00 38.74 3.16
1959 4639 7.336931 ACAAAGTCACTACAAAGTTGAATCACT 59.663 33.333 0.00 0.00 31.97 3.41
1960 4640 7.472543 ACAAAGTCACTACAAAGTTGAATCAC 58.527 34.615 0.00 0.00 31.97 3.06
1961 4641 7.624360 ACAAAGTCACTACAAAGTTGAATCA 57.376 32.000 0.00 0.00 31.97 2.57
1998 4678 9.758651 GTCCCAAAATAAATGACTTAAGTTTGT 57.241 29.630 10.02 0.00 32.12 2.83
1999 4679 9.981114 AGTCCCAAAATAAATGACTTAAGTTTG 57.019 29.630 10.02 7.42 32.61 2.93
2000 4680 9.981114 CAGTCCCAAAATAAATGACTTAAGTTT 57.019 29.630 10.02 2.90 34.21 2.66
2001 4681 9.362151 TCAGTCCCAAAATAAATGACTTAAGTT 57.638 29.630 10.02 0.00 34.21 2.66
2002 4682 8.934023 TCAGTCCCAAAATAAATGACTTAAGT 57.066 30.769 8.13 8.13 34.21 2.24
2003 4683 8.462016 CCTCAGTCCCAAAATAAATGACTTAAG 58.538 37.037 0.00 0.00 34.21 1.85
2004 4684 7.396055 CCCTCAGTCCCAAAATAAATGACTTAA 59.604 37.037 0.00 0.00 34.21 1.85
2005 4685 6.889722 CCCTCAGTCCCAAAATAAATGACTTA 59.110 38.462 0.00 0.00 34.21 2.24
2006 4686 5.716703 CCCTCAGTCCCAAAATAAATGACTT 59.283 40.000 0.00 0.00 34.21 3.01
2007 4687 5.015178 TCCCTCAGTCCCAAAATAAATGACT 59.985 40.000 0.00 0.00 36.77 3.41
2008 4688 5.261216 TCCCTCAGTCCCAAAATAAATGAC 58.739 41.667 0.00 0.00 0.00 3.06
2009 4689 5.015178 ACTCCCTCAGTCCCAAAATAAATGA 59.985 40.000 0.00 0.00 0.00 2.57
2010 4690 5.264395 ACTCCCTCAGTCCCAAAATAAATG 58.736 41.667 0.00 0.00 0.00 2.32
2011 4691 5.536497 ACTCCCTCAGTCCCAAAATAAAT 57.464 39.130 0.00 0.00 0.00 1.40
2012 4692 5.788533 TCTACTCCCTCAGTCCCAAAATAAA 59.211 40.000 0.00 0.00 36.43 1.40
2013 4693 5.347124 TCTACTCCCTCAGTCCCAAAATAA 58.653 41.667 0.00 0.00 36.43 1.40
2014 4694 4.955335 TCTACTCCCTCAGTCCCAAAATA 58.045 43.478 0.00 0.00 36.43 1.40
2015 4695 3.803340 TCTACTCCCTCAGTCCCAAAAT 58.197 45.455 0.00 0.00 36.43 1.82
2016 4696 3.269592 TCTACTCCCTCAGTCCCAAAA 57.730 47.619 0.00 0.00 36.43 2.44
2017 4697 3.107601 CATCTACTCCCTCAGTCCCAAA 58.892 50.000 0.00 0.00 36.43 3.28
2018 4698 2.314852 TCATCTACTCCCTCAGTCCCAA 59.685 50.000 0.00 0.00 36.43 4.12
2019 4699 1.930204 TCATCTACTCCCTCAGTCCCA 59.070 52.381 0.00 0.00 36.43 4.37
2020 4700 2.175931 TCTCATCTACTCCCTCAGTCCC 59.824 54.545 0.00 0.00 36.43 4.46
2021 4701 3.486383 CTCTCATCTACTCCCTCAGTCC 58.514 54.545 0.00 0.00 36.43 3.85
2022 4702 2.884639 GCTCTCATCTACTCCCTCAGTC 59.115 54.545 0.00 0.00 36.43 3.51
2023 4703 2.513738 AGCTCTCATCTACTCCCTCAGT 59.486 50.000 0.00 0.00 39.41 3.41
2024 4704 3.228188 AGCTCTCATCTACTCCCTCAG 57.772 52.381 0.00 0.00 0.00 3.35
2025 4705 3.073798 CCTAGCTCTCATCTACTCCCTCA 59.926 52.174 0.00 0.00 0.00 3.86
2026 4706 3.329520 TCCTAGCTCTCATCTACTCCCTC 59.670 52.174 0.00 0.00 0.00 4.30
2027 4707 3.332044 TCCTAGCTCTCATCTACTCCCT 58.668 50.000 0.00 0.00 0.00 4.20
2028 4708 3.799432 TCCTAGCTCTCATCTACTCCC 57.201 52.381 0.00 0.00 0.00 4.30
2029 4709 4.277423 GTGTTCCTAGCTCTCATCTACTCC 59.723 50.000 0.00 0.00 0.00 3.85
2030 4710 4.277423 GGTGTTCCTAGCTCTCATCTACTC 59.723 50.000 0.00 0.00 0.00 2.59
2031 4711 4.211920 GGTGTTCCTAGCTCTCATCTACT 58.788 47.826 0.00 0.00 0.00 2.57
2032 4712 3.003897 CGGTGTTCCTAGCTCTCATCTAC 59.996 52.174 0.00 0.00 0.00 2.59
2033 4713 3.215151 CGGTGTTCCTAGCTCTCATCTA 58.785 50.000 0.00 0.00 0.00 1.98
2034 4714 2.028130 CGGTGTTCCTAGCTCTCATCT 58.972 52.381 0.00 0.00 0.00 2.90
2035 4715 1.751924 ACGGTGTTCCTAGCTCTCATC 59.248 52.381 0.00 0.00 0.00 2.92
2036 4716 1.853963 ACGGTGTTCCTAGCTCTCAT 58.146 50.000 0.00 0.00 0.00 2.90
2037 4717 1.629043 AACGGTGTTCCTAGCTCTCA 58.371 50.000 0.00 0.00 0.00 3.27
2047 4727 4.514066 AGACCAGAAACATTAACGGTGTTC 59.486 41.667 0.00 0.00 38.76 3.18
2052 4732 5.701290 AGAGAAAGACCAGAAACATTAACGG 59.299 40.000 0.00 0.00 0.00 4.44
2060 4740 1.801178 CGCCAGAGAAAGACCAGAAAC 59.199 52.381 0.00 0.00 0.00 2.78
2066 4746 0.036858 AGAAGCGCCAGAGAAAGACC 60.037 55.000 2.29 0.00 0.00 3.85
2084 4764 2.270986 GGCTGCCCCTGTTTCACAG 61.271 63.158 7.66 0.00 45.53 3.66
2085 4765 2.203480 GGCTGCCCCTGTTTCACA 60.203 61.111 7.66 0.00 0.00 3.58
2086 4766 3.365265 CGGCTGCCCCTGTTTCAC 61.365 66.667 14.12 0.00 0.00 3.18
2087 4767 4.659172 CCGGCTGCCCCTGTTTCA 62.659 66.667 14.12 0.00 0.00 2.69
2095 4775 1.728490 CTGCTTTTATCCGGCTGCCC 61.728 60.000 14.12 0.00 0.00 5.36
2105 4785 7.064253 GTGATTTGGACGTACTACTGCTTTTAT 59.936 37.037 0.00 0.00 0.00 1.40
2151 4835 7.867305 TGTTACTACTGAAATTTGACCAACA 57.133 32.000 0.00 0.00 0.00 3.33
2190 4897 1.270094 TGCTCCAAACTGTACGACTGG 60.270 52.381 0.00 0.00 0.00 4.00
2191 4898 2.061773 CTGCTCCAAACTGTACGACTG 58.938 52.381 0.00 0.00 0.00 3.51
2192 4899 1.687123 ACTGCTCCAAACTGTACGACT 59.313 47.619 0.00 0.00 0.00 4.18
2193 4900 2.150397 ACTGCTCCAAACTGTACGAC 57.850 50.000 0.00 0.00 0.00 4.34
2238 4945 1.608025 GGCGGTCTCTGTGATTTGTGA 60.608 52.381 0.00 0.00 0.00 3.58
2239 4946 0.798776 GGCGGTCTCTGTGATTTGTG 59.201 55.000 0.00 0.00 0.00 3.33
2240 4947 0.670546 CGGCGGTCTCTGTGATTTGT 60.671 55.000 0.00 0.00 0.00 2.83
2241 4948 0.389817 TCGGCGGTCTCTGTGATTTG 60.390 55.000 7.21 0.00 0.00 2.32
2242 4949 0.537188 ATCGGCGGTCTCTGTGATTT 59.463 50.000 7.21 0.00 0.00 2.17
2243 4950 0.537188 AATCGGCGGTCTCTGTGATT 59.463 50.000 7.21 0.00 0.00 2.57
2244 4951 0.103208 GAATCGGCGGTCTCTGTGAT 59.897 55.000 7.21 0.00 0.00 3.06
2248 4955 0.108138 AAAGGAATCGGCGGTCTCTG 60.108 55.000 7.21 0.00 0.00 3.35
2250 4957 0.108329 TGAAAGGAATCGGCGGTCTC 60.108 55.000 7.21 0.00 0.00 3.36
2274 4981 6.255887 CGATTCTACGCTTCAGGATTAGTTTT 59.744 38.462 0.00 0.00 0.00 2.43
2293 5000 3.082579 GCTCGGGCCTGACGATTCT 62.083 63.158 11.27 0.00 39.89 2.40
2311 5018 2.672996 CCAACCCCAAGTCGGCTG 60.673 66.667 0.00 0.00 0.00 4.85
2317 5024 2.037677 AGTCCCCCAACCCCAAGT 60.038 61.111 0.00 0.00 0.00 3.16
2333 5040 2.356313 AGCGACGTCTTGGTGCAG 60.356 61.111 14.70 0.00 0.00 4.41
2339 5046 0.453793 ATCTCCAGAGCGACGTCTTG 59.546 55.000 14.70 6.62 0.00 3.02
2340 5047 2.039818 TATCTCCAGAGCGACGTCTT 57.960 50.000 14.70 1.06 0.00 3.01
2341 5048 2.264005 ATATCTCCAGAGCGACGTCT 57.736 50.000 14.70 0.00 0.00 4.18
2342 5049 2.290916 TCAATATCTCCAGAGCGACGTC 59.709 50.000 5.18 5.18 0.00 4.34
2343 5050 2.298610 TCAATATCTCCAGAGCGACGT 58.701 47.619 0.00 0.00 0.00 4.34
2344 5051 3.190327 AGATCAATATCTCCAGAGCGACG 59.810 47.826 0.00 0.00 38.04 5.12
2345 5052 4.782019 AGATCAATATCTCCAGAGCGAC 57.218 45.455 0.00 0.00 38.04 5.19
2346 5053 6.007076 AGTAAGATCAATATCTCCAGAGCGA 58.993 40.000 0.00 0.00 41.81 4.93
2347 5054 6.266168 AGTAAGATCAATATCTCCAGAGCG 57.734 41.667 0.00 0.00 41.81 5.03
2348 5055 8.458843 GTCTAGTAAGATCAATATCTCCAGAGC 58.541 40.741 0.00 0.00 41.81 4.09
2349 5056 8.956426 GGTCTAGTAAGATCAATATCTCCAGAG 58.044 40.741 0.00 0.00 41.81 3.35
2350 5057 7.891183 GGGTCTAGTAAGATCAATATCTCCAGA 59.109 40.741 0.00 0.00 41.81 3.86
2351 5058 7.148154 CGGGTCTAGTAAGATCAATATCTCCAG 60.148 44.444 0.00 0.00 41.81 3.86
2352 5059 6.659668 CGGGTCTAGTAAGATCAATATCTCCA 59.340 42.308 0.00 0.00 41.81 3.86
2353 5060 6.660094 ACGGGTCTAGTAAGATCAATATCTCC 59.340 42.308 0.00 0.00 41.81 3.71
2354 5061 7.390996 TGACGGGTCTAGTAAGATCAATATCTC 59.609 40.741 0.00 0.00 41.81 2.75
2355 5062 7.232188 TGACGGGTCTAGTAAGATCAATATCT 58.768 38.462 0.00 0.00 44.67 1.98
2356 5063 7.450124 TGACGGGTCTAGTAAGATCAATATC 57.550 40.000 0.00 0.00 34.21 1.63
2357 5064 7.891183 AGATGACGGGTCTAGTAAGATCAATAT 59.109 37.037 0.00 0.00 34.21 1.28
2358 5065 7.232188 AGATGACGGGTCTAGTAAGATCAATA 58.768 38.462 0.00 0.00 34.21 1.90
2359 5066 6.071984 AGATGACGGGTCTAGTAAGATCAAT 58.928 40.000 0.00 0.00 34.21 2.57
2360 5067 5.446860 AGATGACGGGTCTAGTAAGATCAA 58.553 41.667 0.00 0.00 34.21 2.57
2361 5068 5.050126 AGATGACGGGTCTAGTAAGATCA 57.950 43.478 0.00 0.00 34.21 2.92
2362 5069 5.766174 AGAAGATGACGGGTCTAGTAAGATC 59.234 44.000 0.00 0.00 33.30 2.75
2363 5070 5.697067 AGAAGATGACGGGTCTAGTAAGAT 58.303 41.667 0.00 0.00 33.30 2.40
2364 5071 5.113446 AGAAGATGACGGGTCTAGTAAGA 57.887 43.478 0.00 0.00 0.00 2.10
2365 5072 5.591067 AGAAGAAGATGACGGGTCTAGTAAG 59.409 44.000 0.00 0.00 0.00 2.34
2366 5073 5.357314 CAGAAGAAGATGACGGGTCTAGTAA 59.643 44.000 0.00 0.00 0.00 2.24
2367 5074 4.882427 CAGAAGAAGATGACGGGTCTAGTA 59.118 45.833 0.00 0.00 0.00 1.82
2368 5075 3.697045 CAGAAGAAGATGACGGGTCTAGT 59.303 47.826 0.00 0.00 0.00 2.57
2369 5076 3.067461 CCAGAAGAAGATGACGGGTCTAG 59.933 52.174 0.00 0.00 0.00 2.43
2370 5077 3.024547 CCAGAAGAAGATGACGGGTCTA 58.975 50.000 0.00 0.00 0.00 2.59
2371 5078 1.827969 CCAGAAGAAGATGACGGGTCT 59.172 52.381 0.00 0.00 0.00 3.85
2372 5079 1.825474 TCCAGAAGAAGATGACGGGTC 59.175 52.381 0.00 0.00 0.00 4.46
2373 5080 1.938585 TCCAGAAGAAGATGACGGGT 58.061 50.000 0.00 0.00 0.00 5.28
2374 5081 2.831333 CATCCAGAAGAAGATGACGGG 58.169 52.381 0.00 0.00 42.04 5.28
2375 5082 2.208431 GCATCCAGAAGAAGATGACGG 58.792 52.381 4.25 0.00 42.04 4.79
2376 5083 2.897436 TGCATCCAGAAGAAGATGACG 58.103 47.619 4.25 0.00 42.04 4.35
2377 5084 5.411977 CCATATGCATCCAGAAGAAGATGAC 59.588 44.000 0.19 0.00 42.04 3.06
2378 5085 5.514310 CCCATATGCATCCAGAAGAAGATGA 60.514 44.000 0.19 0.00 42.04 2.92
2379 5086 4.700692 CCCATATGCATCCAGAAGAAGATG 59.299 45.833 0.19 0.00 42.30 2.90
2380 5087 4.263816 CCCCATATGCATCCAGAAGAAGAT 60.264 45.833 0.19 0.00 0.00 2.40
2381 5088 3.073503 CCCCATATGCATCCAGAAGAAGA 59.926 47.826 0.19 0.00 0.00 2.87
2382 5089 3.418995 CCCCATATGCATCCAGAAGAAG 58.581 50.000 0.19 0.00 0.00 2.85
2383 5090 2.489619 GCCCCATATGCATCCAGAAGAA 60.490 50.000 0.19 0.00 0.00 2.52
2384 5091 1.074405 GCCCCATATGCATCCAGAAGA 59.926 52.381 0.19 0.00 0.00 2.87
2385 5092 1.542492 GCCCCATATGCATCCAGAAG 58.458 55.000 0.19 0.00 0.00 2.85
2386 5093 0.250858 CGCCCCATATGCATCCAGAA 60.251 55.000 0.19 0.00 0.00 3.02
2387 5094 1.376086 CGCCCCATATGCATCCAGA 59.624 57.895 0.19 0.00 0.00 3.86
2388 5095 1.676635 CCGCCCCATATGCATCCAG 60.677 63.158 0.19 0.00 0.00 3.86
2389 5096 2.435663 CCGCCCCATATGCATCCA 59.564 61.111 0.19 0.00 0.00 3.41
2390 5097 2.361610 CCCGCCCCATATGCATCC 60.362 66.667 0.19 0.00 0.00 3.51
2391 5098 1.675641 GACCCGCCCCATATGCATC 60.676 63.158 0.19 0.00 0.00 3.91
2392 5099 2.005606 TTGACCCGCCCCATATGCAT 62.006 55.000 3.79 3.79 0.00 3.96
2393 5100 2.216782 TTTGACCCGCCCCATATGCA 62.217 55.000 0.00 0.00 0.00 3.96
2394 5101 1.454847 TTTGACCCGCCCCATATGC 60.455 57.895 0.00 0.00 0.00 3.14
2395 5102 0.106719 AGTTTGACCCGCCCCATATG 60.107 55.000 0.00 0.00 0.00 1.78
2396 5103 0.629058 AAGTTTGACCCGCCCCATAT 59.371 50.000 0.00 0.00 0.00 1.78
2397 5104 0.406361 AAAGTTTGACCCGCCCCATA 59.594 50.000 0.00 0.00 0.00 2.74
2398 5105 1.155155 AAAGTTTGACCCGCCCCAT 59.845 52.632 0.00 0.00 0.00 4.00
2399 5106 1.830408 CAAAGTTTGACCCGCCCCA 60.830 57.895 10.19 0.00 0.00 4.96
2400 5107 3.047735 CAAAGTTTGACCCGCCCC 58.952 61.111 10.19 0.00 0.00 5.80
2401 5108 2.338620 GCAAAGTTTGACCCGCCC 59.661 61.111 19.82 0.00 0.00 6.13
2402 5109 2.050442 CGCAAAGTTTGACCCGCC 60.050 61.111 19.82 0.00 0.00 6.13
2403 5110 2.050442 CCGCAAAGTTTGACCCGC 60.050 61.111 19.82 2.28 0.00 6.13
2404 5111 2.050442 GCCGCAAAGTTTGACCCG 60.050 61.111 19.82 12.62 0.00 5.28
2405 5112 2.338620 GGCCGCAAAGTTTGACCC 59.661 61.111 19.82 11.10 0.00 4.46
2406 5113 2.338620 GGGCCGCAAAGTTTGACC 59.661 61.111 19.82 15.32 0.00 4.02
2407 5114 2.050442 CGGGCCGCAAAGTTTGAC 60.050 61.111 19.82 9.49 0.00 3.18
2408 5115 2.517402 ACGGGCCGCAAAGTTTGA 60.517 55.556 28.71 0.00 0.00 2.69
2409 5116 2.050442 GACGGGCCGCAAAGTTTG 60.050 61.111 28.71 11.41 0.00 2.93
2410 5117 2.203294 AGACGGGCCGCAAAGTTT 60.203 55.556 28.71 3.66 0.00 2.66
2411 5118 1.823169 TAGAGACGGGCCGCAAAGTT 61.823 55.000 28.71 4.60 0.00 2.66
2412 5119 1.614241 ATAGAGACGGGCCGCAAAGT 61.614 55.000 28.71 5.55 0.00 2.66
2413 5120 0.876342 GATAGAGACGGGCCGCAAAG 60.876 60.000 28.71 0.00 0.00 2.77
2414 5121 1.143183 GATAGAGACGGGCCGCAAA 59.857 57.895 28.71 7.75 0.00 3.68
2415 5122 2.792947 GGATAGAGACGGGCCGCAA 61.793 63.158 28.71 7.34 0.00 4.85
2416 5123 3.224324 GGATAGAGACGGGCCGCA 61.224 66.667 28.71 6.54 0.00 5.69
2417 5124 2.701163 CTTGGATAGAGACGGGCCGC 62.701 65.000 28.71 19.04 0.00 6.53
2418 5125 1.364171 CTTGGATAGAGACGGGCCG 59.636 63.158 27.06 27.06 0.00 6.13
2419 5126 1.069935 GCTTGGATAGAGACGGGCC 59.930 63.158 0.00 0.00 0.00 5.80
2420 5127 1.069935 GGCTTGGATAGAGACGGGC 59.930 63.158 0.00 0.00 0.00 6.13
2421 5128 0.830648 TTGGCTTGGATAGAGACGGG 59.169 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.