Multiple sequence alignment - TraesCS3B01G583700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G583700 chr3B 100.000 4605 0 0 1 4605 811114659 811110055 0.000000e+00 8504.0
1 TraesCS3B01G583700 chr3B 89.611 2830 227 26 914 3692 810951737 810954550 0.000000e+00 3535.0
2 TraesCS3B01G583700 chr3B 83.028 1585 230 17 1818 3384 811079574 811081137 0.000000e+00 1400.0
3 TraesCS3B01G583700 chr3B 93.846 65 2 1 3766 3828 810954664 810954728 3.790000e-16 97.1
4 TraesCS3B01G583700 chr3A 92.845 3955 182 35 1 3937 733625386 733621515 0.000000e+00 5642.0
5 TraesCS3B01G583700 chr3A 89.958 2161 178 15 914 3044 733042967 733045118 0.000000e+00 2752.0
6 TraesCS3B01G583700 chr3A 89.114 1433 118 15 2304 3720 733532477 733531067 0.000000e+00 1748.0
7 TraesCS3B01G583700 chr3A 90.808 631 56 2 3067 3695 733045351 733045981 0.000000e+00 843.0
8 TraesCS3B01G583700 chr3A 81.792 1038 144 27 914 1923 733568115 733567095 0.000000e+00 828.0
9 TraesCS3B01G583700 chr3A 81.420 662 96 15 914 1552 733561228 733560571 2.460000e-142 516.0
10 TraesCS3B01G583700 chr3A 81.338 568 85 12 914 1462 733538330 733537765 4.230000e-120 442.0
11 TraesCS3B01G583700 chr3A 86.494 348 40 5 3943 4289 733621435 733621094 4.350000e-100 375.0
12 TraesCS3B01G583700 chr3A 91.379 174 12 2 3766 3937 733046092 733046264 7.700000e-58 235.0
13 TraesCS3B01G583700 chr3A 86.957 115 15 0 3936 4050 733523003 733522889 3.740000e-26 130.0
14 TraesCS3B01G583700 chr3D 93.963 3578 150 18 1 3551 604126065 604122527 0.000000e+00 5350.0
15 TraesCS3B01G583700 chr3D 89.583 2832 230 28 914 3695 602800014 602797198 0.000000e+00 3535.0
16 TraesCS3B01G583700 chr3D 89.071 1583 133 15 1907 3474 604014845 604013288 0.000000e+00 1929.0
17 TraesCS3B01G583700 chr3D 81.096 1989 298 44 1425 3383 604137795 604135855 0.000000e+00 1519.0
18 TraesCS3B01G583700 chr3D 81.791 1697 254 21 1674 3338 603962728 603964401 0.000000e+00 1371.0
19 TraesCS3B01G583700 chr3D 79.979 1933 303 32 1657 3532 604252942 604251037 0.000000e+00 1349.0
20 TraesCS3B01G583700 chr3D 83.183 999 142 11 914 1888 604026869 604025873 0.000000e+00 891.0
21 TraesCS3B01G583700 chr3D 82.483 1039 148 27 917 1923 604024453 604023417 0.000000e+00 880.0
22 TraesCS3B01G583700 chr3D 81.801 1044 155 22 914 1927 604021564 604020526 0.000000e+00 843.0
23 TraesCS3B01G583700 chr3D 81.510 1033 161 24 914 1920 604019051 604018023 0.000000e+00 822.0
24 TraesCS3B01G583700 chr3D 93.157 453 30 1 3470 3922 604009755 604009304 0.000000e+00 664.0
25 TraesCS3B01G583700 chr3D 85.540 491 65 4 1464 1949 604015343 604014854 4.110000e-140 508.0
26 TraesCS3B01G583700 chr3D 85.345 348 43 5 3943 4289 604032197 604031857 2.040000e-93 353.0
27 TraesCS3B01G583700 chr3D 92.889 225 15 1 3713 3937 604032501 604032278 4.440000e-85 326.0
28 TraesCS3B01G583700 chr3D 93.103 174 9 2 3766 3937 602797087 602796915 7.650000e-63 252.0
29 TraesCS3B01G583700 chr3D 93.750 64 4 0 4448 4511 477829782 477829845 3.790000e-16 97.1
30 TraesCS3B01G583700 chrUn 80.327 1774 252 50 1654 3386 42260130 42261847 0.000000e+00 1253.0
31 TraesCS3B01G583700 chrUn 100.000 55 0 0 4457 4511 42865041 42865095 8.150000e-18 102.0
32 TraesCS3B01G583700 chrUn 100.000 55 0 0 4457 4511 97274079 97274133 8.150000e-18 102.0
33 TraesCS3B01G583700 chrUn 100.000 55 0 0 4457 4511 100308655 100308709 8.150000e-18 102.0
34 TraesCS3B01G583700 chrUn 100.000 55 0 0 4457 4511 108902913 108902859 8.150000e-18 102.0
35 TraesCS3B01G583700 chrUn 100.000 55 0 0 4457 4511 259270598 259270544 8.150000e-18 102.0
36 TraesCS3B01G583700 chr7D 83.121 314 42 8 62 367 555540589 555540899 4.540000e-70 276.0
37 TraesCS3B01G583700 chr7D 80.997 321 44 13 62 367 627617359 627617041 5.950000e-59 239.0
38 TraesCS3B01G583700 chr1D 82.748 313 45 6 62 367 339318087 339318397 2.110000e-68 270.0
39 TraesCS3B01G583700 chr1D 97.273 110 1 2 4496 4605 427681797 427681904 7.870000e-43 185.0
40 TraesCS3B01G583700 chr1D 78.778 311 38 9 62 367 454520217 454519930 2.830000e-42 183.0
41 TraesCS3B01G583700 chr1D 93.750 64 4 0 4448 4511 135890664 135890727 3.790000e-16 97.1
42 TraesCS3B01G583700 chr2B 82.042 284 43 5 459 738 728195125 728195404 7.700000e-58 235.0
43 TraesCS3B01G583700 chr6A 96.491 114 2 2 4493 4605 34250150 34250038 2.190000e-43 187.0
44 TraesCS3B01G583700 chr6A 86.061 165 21 2 237 401 107614339 107614501 4.740000e-40 176.0
45 TraesCS3B01G583700 chr5D 94.915 118 4 2 4488 4605 442154546 442154431 2.830000e-42 183.0
46 TraesCS3B01G583700 chr5D 95.652 115 2 3 4492 4605 258851966 258851854 1.020000e-41 182.0
47 TraesCS3B01G583700 chr5D 91.406 128 5 6 4478 4603 282073821 282073698 2.200000e-38 171.0
48 TraesCS3B01G583700 chr4A 97.248 109 2 1 4497 4605 481482938 481482831 2.830000e-42 183.0
49 TraesCS3B01G583700 chr6D 94.828 116 4 2 4490 4605 371510790 371510677 3.660000e-41 180.0
50 TraesCS3B01G583700 chr6D 94.118 119 3 3 4489 4605 205996746 205996630 1.320000e-40 178.0
51 TraesCS3B01G583700 chr6B 77.778 315 50 15 459 760 665537668 665537975 4.740000e-40 176.0
52 TraesCS3B01G583700 chr7A 92.000 125 6 4 4483 4605 287350941 287350819 6.130000e-39 172.0
53 TraesCS3B01G583700 chr1B 77.985 268 45 10 463 725 204561012 204561270 6.170000e-34 156.0
54 TraesCS3B01G583700 chr1B 77.381 252 52 5 502 751 204951820 204952068 1.340000e-30 145.0
55 TraesCS3B01G583700 chr2A 87.500 136 14 3 782 915 578117505 578117639 2.220000e-33 154.0
56 TraesCS3B01G583700 chr4D 100.000 55 0 0 4457 4511 170686607 170686661 8.150000e-18 102.0
57 TraesCS3B01G583700 chr4D 100.000 55 0 0 4457 4511 232705734 232705680 8.150000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G583700 chr3B 811110055 811114659 4604 True 8504.000000 8504 100.000000 1 4605 1 chr3B.!!$R1 4604
1 TraesCS3B01G583700 chr3B 810951737 810954728 2991 False 1816.050000 3535 91.728500 914 3828 2 chr3B.!!$F2 2914
2 TraesCS3B01G583700 chr3B 811079574 811081137 1563 False 1400.000000 1400 83.028000 1818 3384 1 chr3B.!!$F1 1566
3 TraesCS3B01G583700 chr3A 733621094 733625386 4292 True 3008.500000 5642 89.669500 1 4289 2 chr3A.!!$R6 4288
4 TraesCS3B01G583700 chr3A 733531067 733532477 1410 True 1748.000000 1748 89.114000 2304 3720 1 chr3A.!!$R2 1416
5 TraesCS3B01G583700 chr3A 733042967 733046264 3297 False 1276.666667 2752 90.715000 914 3937 3 chr3A.!!$F1 3023
6 TraesCS3B01G583700 chr3A 733567095 733568115 1020 True 828.000000 828 81.792000 914 1923 1 chr3A.!!$R5 1009
7 TraesCS3B01G583700 chr3A 733560571 733561228 657 True 516.000000 516 81.420000 914 1552 1 chr3A.!!$R4 638
8 TraesCS3B01G583700 chr3A 733537765 733538330 565 True 442.000000 442 81.338000 914 1462 1 chr3A.!!$R3 548
9 TraesCS3B01G583700 chr3D 604122527 604126065 3538 True 5350.000000 5350 93.963000 1 3551 1 chr3D.!!$R1 3550
10 TraesCS3B01G583700 chr3D 602796915 602800014 3099 True 1893.500000 3535 91.343000 914 3937 2 chr3D.!!$R4 3023
11 TraesCS3B01G583700 chr3D 604135855 604137795 1940 True 1519.000000 1519 81.096000 1425 3383 1 chr3D.!!$R2 1958
12 TraesCS3B01G583700 chr3D 603962728 603964401 1673 False 1371.000000 1371 81.791000 1674 3338 1 chr3D.!!$F2 1664
13 TraesCS3B01G583700 chr3D 604251037 604252942 1905 True 1349.000000 1349 79.979000 1657 3532 1 chr3D.!!$R3 1875
14 TraesCS3B01G583700 chr3D 604009304 604026869 17565 True 933.857143 1929 85.249286 914 3922 7 chr3D.!!$R5 3008
15 TraesCS3B01G583700 chr3D 604031857 604032501 644 True 339.500000 353 89.117000 3713 4289 2 chr3D.!!$R6 576
16 TraesCS3B01G583700 chrUn 42260130 42261847 1717 False 1253.000000 1253 80.327000 1654 3386 1 chrUn.!!$F1 1732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 548 0.032117 TCCTCCCACACCTCATCGAT 60.032 55.0 0.0 0.0 0.00 3.59 F
2233 13306 0.035725 TGCTCATGCTGTCAAGGAGG 60.036 55.0 0.0 0.0 40.48 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 13330 0.779997 ACCTTGGCCCTGAGTTCAAT 59.220 50.0 0.0 0.0 0.0 2.57 R
4052 19077 0.404426 TCTCTCACCTGGTCCTTCGA 59.596 55.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 60 7.607991 CAGTACAAGGTTCAGGAATTGTTCTAT 59.392 37.037 6.38 0.00 37.15 1.98
70 75 7.872113 ATTGTTCTATGGATCAGAAGGAAAC 57.128 36.000 0.00 0.00 32.81 2.78
93 99 4.922692 CGCAATTTCATGGAGCACTTTTTA 59.077 37.500 0.00 0.00 0.00 1.52
206 213 5.291971 GGTACTAAAACGTCAAGGAAGTCA 58.708 41.667 0.00 0.00 0.00 3.41
288 295 2.032681 GCGCAGTTGGAGGAAGGT 59.967 61.111 0.30 0.00 0.00 3.50
295 302 2.065799 AGTTGGAGGAAGGTGATTGGT 58.934 47.619 0.00 0.00 0.00 3.67
308 315 2.238646 GTGATTGGTGGGAGACATACCA 59.761 50.000 0.00 0.00 44.33 3.25
368 375 4.130118 GCGACCTGGAGATCATTACATTT 58.870 43.478 0.00 0.00 0.00 2.32
372 379 6.319048 ACCTGGAGATCATTACATTTCTGT 57.681 37.500 0.00 0.00 39.49 3.41
422 429 3.117701 TCTGAGACACTGAGGATAGGAGG 60.118 52.174 0.00 0.00 0.00 4.30
463 470 2.508439 GCGGCGTCAAATCGAGGA 60.508 61.111 9.37 0.00 0.00 3.71
464 471 2.517450 GCGGCGTCAAATCGAGGAG 61.517 63.158 9.37 0.00 0.00 3.69
465 472 1.878522 CGGCGTCAAATCGAGGAGG 60.879 63.158 0.00 0.00 0.00 4.30
490 500 0.688087 AACTAGAGAGAAGGGGGCGG 60.688 60.000 0.00 0.00 0.00 6.13
510 520 2.035783 GGGAGGACAAAGGGGCAC 59.964 66.667 0.00 0.00 0.00 5.01
538 548 0.032117 TCCTCCCACACCTCATCGAT 60.032 55.000 0.00 0.00 0.00 3.59
576 586 1.372004 CACCACGCACATGGCAAAG 60.372 57.895 0.00 0.00 44.33 2.77
588 598 1.198713 TGGCAAAGCAGGAAAAACCA 58.801 45.000 0.00 0.00 42.04 3.67
762 773 0.599204 GTCGAAACCAGCCGAGTGAA 60.599 55.000 0.00 0.00 35.31 3.18
828 854 2.437895 AGCGAGATCGGACGGACA 60.438 61.111 4.18 0.00 40.23 4.02
829 855 1.989966 GAGCGAGATCGGACGGACAA 61.990 60.000 4.18 0.00 40.23 3.18
858 884 2.728817 GGAATCGATCCGACGGCT 59.271 61.111 9.66 0.00 39.18 5.52
1071 1104 3.161450 TAGGCATCCGTCCTGGCC 61.161 66.667 0.00 0.00 46.77 5.36
1179 1213 2.202932 CGCCATCTCCTCCCGTTG 60.203 66.667 0.00 0.00 0.00 4.10
1187 1221 2.431942 CCTCCCGTTGTTCGTCGG 60.432 66.667 0.00 0.00 45.42 4.79
1278 1313 6.721208 AGTTGATTTGGCTTCCTATTTCAGAA 59.279 34.615 0.00 0.00 0.00 3.02
1290 1332 9.282247 CTTCCTATTTCAGAATCGAACAATTTG 57.718 33.333 0.00 0.00 0.00 2.32
1291 1333 8.560355 TCCTATTTCAGAATCGAACAATTTGA 57.440 30.769 2.79 0.00 0.00 2.69
1292 1334 9.177608 TCCTATTTCAGAATCGAACAATTTGAT 57.822 29.630 2.79 0.00 35.27 2.57
1293 1335 9.793252 CCTATTTCAGAATCGAACAATTTGATT 57.207 29.630 2.79 4.09 44.47 2.57
1655 1718 9.330063 TCATGCTTATCTTTAATGTTGGAGTAG 57.670 33.333 0.00 0.00 0.00 2.57
2011 13084 1.734465 CTCTCCCGTTTGAATGTCAGC 59.266 52.381 0.00 0.00 0.00 4.26
2085 13158 8.789825 ACAAATATGCCAAAAATATCTTTGCA 57.210 26.923 0.00 0.00 35.38 4.08
2210 13283 1.825474 ACCACGATGAGTTCAGTAGGG 59.175 52.381 0.00 0.00 0.00 3.53
2233 13306 0.035725 TGCTCATGCTGTCAAGGAGG 60.036 55.000 0.00 0.00 40.48 4.30
2239 13312 1.003233 GCTGTCAAGGAGGTCACCC 60.003 63.158 0.00 0.00 0.00 4.61
2257 13330 4.141287 CACCCAGGTCAGTTACAATCAAA 58.859 43.478 0.00 0.00 0.00 2.69
2293 13366 5.671493 CCAAGGTATAAGATTTCCTCACGT 58.329 41.667 0.00 0.00 0.00 4.49
2747 13824 4.761739 GCTATTATTACCTCCAGCATTGCA 59.238 41.667 11.91 0.00 0.00 4.08
2839 13934 4.117685 GCGTATACTTACAAAGGTCCCTG 58.882 47.826 0.56 0.00 0.00 4.45
2840 13935 4.117685 CGTATACTTACAAAGGTCCCTGC 58.882 47.826 0.56 0.00 0.00 4.85
2841 13936 4.142004 CGTATACTTACAAAGGTCCCTGCT 60.142 45.833 0.56 0.00 0.00 4.24
2842 13937 2.568623 ACTTACAAAGGTCCCTGCTG 57.431 50.000 0.00 0.00 0.00 4.41
2843 13938 1.774856 ACTTACAAAGGTCCCTGCTGT 59.225 47.619 6.58 6.58 0.00 4.40
2844 13939 2.224548 ACTTACAAAGGTCCCTGCTGTC 60.225 50.000 4.96 0.00 0.00 3.51
2845 13940 1.429930 TACAAAGGTCCCTGCTGTCA 58.570 50.000 4.96 0.00 0.00 3.58
2846 13941 0.109342 ACAAAGGTCCCTGCTGTCAG 59.891 55.000 0.00 0.00 40.02 3.51
3179 14493 2.227757 TTGGATGCTTCCGGGGTCA 61.228 57.895 13.54 0.00 45.89 4.02
3256 14570 7.038017 TGGAAGAAGTGAAGATAGAATGGAAGT 60.038 37.037 0.00 0.00 0.00 3.01
3276 14590 2.866156 GTGCGAAATAGACTGCAGCATA 59.134 45.455 15.27 7.33 38.14 3.14
3297 14611 3.282885 AGTTCTTGCCAAGCTATTAGCC 58.717 45.455 12.05 0.00 43.77 3.93
3343 14671 5.405269 GCCAAGGTCATTGTTACATTTTGAC 59.595 40.000 12.25 12.25 37.17 3.18
3572 18478 2.172851 AAAACGGTATCGGCTTGTGA 57.827 45.000 0.00 0.00 41.39 3.58
3574 18480 3.530265 AAACGGTATCGGCTTGTGATA 57.470 42.857 0.00 0.00 41.39 2.15
3594 18500 7.147863 TGTGATATTGCAAGCACTATTTCCATT 60.148 33.333 22.35 0.00 32.69 3.16
3662 18570 9.480053 AAACAAATAATGTGATCAGGTGAAAAG 57.520 29.630 0.00 0.00 42.99 2.27
3678 18586 2.399916 AAAGACATCTCTGCCTGCTC 57.600 50.000 0.00 0.00 0.00 4.26
3717 18625 3.545481 GTCATGCACGACGGAGCG 61.545 66.667 0.00 0.00 31.84 5.03
3720 18628 2.507102 ATGCACGACGGAGCGAAG 60.507 61.111 0.00 0.00 31.84 3.79
3794 18744 6.743575 ACATCTGGTTGTTCTATTTACAGC 57.256 37.500 0.00 0.00 0.00 4.40
3938 18963 5.121925 CAGATCTGATGGAAGGAATTATGCG 59.878 44.000 18.34 0.00 0.00 4.73
3941 18966 3.743521 TGATGGAAGGAATTATGCGGAG 58.256 45.455 0.00 0.00 0.00 4.63
3955 18980 3.293702 GGAGAGCCGTGAAGAGCT 58.706 61.111 0.00 0.00 43.55 4.09
3975 19000 5.246307 AGCTAAATCGGCTCACTAAAACTT 58.754 37.500 0.00 0.00 34.70 2.66
3986 19011 4.450976 TCACTAAAACTTGAGCTGAGCAA 58.549 39.130 7.39 0.00 0.00 3.91
4006 19031 4.387862 GCAACATCAATGCTTTTCTCAAGG 59.612 41.667 0.00 0.00 40.64 3.61
4011 19036 6.716628 ACATCAATGCTTTTCTCAAGGAGTTA 59.283 34.615 0.00 0.00 0.00 2.24
4013 19038 5.707298 TCAATGCTTTTCTCAAGGAGTTAGG 59.293 40.000 0.00 0.00 0.00 2.69
4029 19054 3.108376 GTTAGGTGACAGGGAGGATCTT 58.892 50.000 0.00 0.00 33.73 2.40
4087 19112 5.455899 GGTGAGAGAGATGGCCTATGAAATT 60.456 44.000 3.32 0.00 0.00 1.82
4096 19121 3.201930 TGGCCTATGAAATTAGGACTGCA 59.798 43.478 3.32 0.00 46.19 4.41
4104 19129 9.376075 CTATGAAATTAGGACTGCATCGATAAT 57.624 33.333 0.00 0.00 0.00 1.28
4119 19144 6.129273 GCATCGATAATTACATGCAAAAGCTG 60.129 38.462 15.96 0.00 41.16 4.24
4125 19150 0.963962 ACATGCAAAAGCTGGACCAG 59.036 50.000 17.83 17.83 34.12 4.00
4131 19156 1.719063 AAAAGCTGGACCAGGAGCCA 61.719 55.000 23.09 0.00 35.69 4.75
4132 19157 1.719063 AAAGCTGGACCAGGAGCCAA 61.719 55.000 23.09 0.00 35.69 4.52
4146 19171 3.053619 AGGAGCCAAATAAAGTAGGTGGG 60.054 47.826 0.00 0.00 0.00 4.61
4154 19179 6.364701 CAAATAAAGTAGGTGGGATCATGGA 58.635 40.000 0.00 0.00 0.00 3.41
4157 19182 3.136641 AGTAGGTGGGATCATGGACTT 57.863 47.619 0.00 0.00 0.00 3.01
4175 19200 2.276201 CTTTATCCACGGCAACATCGA 58.724 47.619 0.00 0.00 0.00 3.59
4217 19243 5.557576 TTGTCTATGGGATCTCTGGAATG 57.442 43.478 0.00 0.00 0.00 2.67
4223 19249 2.342659 GGGATCTCTGGAATGATGGGA 58.657 52.381 0.00 0.00 0.00 4.37
4253 19279 2.236146 TGACAGCATCGGTAAGGTGAAT 59.764 45.455 0.00 0.00 37.04 2.57
4254 19280 3.270877 GACAGCATCGGTAAGGTGAATT 58.729 45.455 0.00 0.00 37.04 2.17
4255 19281 3.686016 ACAGCATCGGTAAGGTGAATTT 58.314 40.909 0.00 0.00 37.04 1.82
4257 19283 5.437060 ACAGCATCGGTAAGGTGAATTTAT 58.563 37.500 0.00 0.00 37.04 1.40
4259 19285 6.038271 ACAGCATCGGTAAGGTGAATTTATTC 59.962 38.462 0.00 0.00 37.04 1.75
4267 19293 7.414762 CGGTAAGGTGAATTTATTCGGAATTGT 60.415 37.037 8.76 0.00 39.62 2.71
4289 19315 0.664767 AGACAAGCGAGCGACAGAAC 60.665 55.000 0.00 0.00 0.00 3.01
4290 19316 1.935065 GACAAGCGAGCGACAGAACG 61.935 60.000 0.00 0.00 0.00 3.95
4291 19317 1.729484 CAAGCGAGCGACAGAACGA 60.729 57.895 0.00 0.00 35.09 3.85
4292 19318 1.729838 AAGCGAGCGACAGAACGAC 60.730 57.895 0.00 0.00 35.09 4.34
4293 19319 2.402282 AAGCGAGCGACAGAACGACA 62.402 55.000 0.00 0.00 35.09 4.35
4294 19320 2.429351 GCGAGCGACAGAACGACAG 61.429 63.158 0.00 0.00 35.09 3.51
4295 19321 1.206831 CGAGCGACAGAACGACAGA 59.793 57.895 0.00 0.00 35.09 3.41
4296 19322 0.385598 CGAGCGACAGAACGACAGAA 60.386 55.000 0.00 0.00 35.09 3.02
4297 19323 1.332178 GAGCGACAGAACGACAGAAG 58.668 55.000 0.00 0.00 35.09 2.85
4298 19324 0.952280 AGCGACAGAACGACAGAAGA 59.048 50.000 0.00 0.00 35.09 2.87
4299 19325 1.068885 AGCGACAGAACGACAGAAGAG 60.069 52.381 0.00 0.00 35.09 2.85
4300 19326 1.970447 CGACAGAACGACAGAAGAGG 58.030 55.000 0.00 0.00 35.09 3.69
4301 19327 1.267261 CGACAGAACGACAGAAGAGGT 59.733 52.381 0.00 0.00 35.09 3.85
4302 19328 2.287668 CGACAGAACGACAGAAGAGGTT 60.288 50.000 0.00 0.00 35.09 3.50
4303 19329 3.053455 GACAGAACGACAGAAGAGGTTG 58.947 50.000 0.00 0.00 0.00 3.77
4304 19330 1.795286 CAGAACGACAGAAGAGGTTGC 59.205 52.381 0.00 0.00 0.00 4.17
4305 19331 1.412710 AGAACGACAGAAGAGGTTGCA 59.587 47.619 0.00 0.00 0.00 4.08
4306 19332 1.795286 GAACGACAGAAGAGGTTGCAG 59.205 52.381 0.00 0.00 0.00 4.41
4307 19333 0.753262 ACGACAGAAGAGGTTGCAGT 59.247 50.000 0.00 0.00 0.00 4.40
4308 19334 1.143305 CGACAGAAGAGGTTGCAGTG 58.857 55.000 0.00 0.00 0.00 3.66
4309 19335 1.539065 CGACAGAAGAGGTTGCAGTGT 60.539 52.381 0.00 0.00 0.00 3.55
4310 19336 1.869767 GACAGAAGAGGTTGCAGTGTG 59.130 52.381 0.00 0.00 0.00 3.82
4311 19337 0.590195 CAGAAGAGGTTGCAGTGTGC 59.410 55.000 0.00 0.00 45.29 4.57
4320 19346 4.565531 GCAGTGTGCAGCCATTTC 57.434 55.556 0.00 0.00 44.26 2.17
4321 19347 1.661480 GCAGTGTGCAGCCATTTCA 59.339 52.632 0.00 0.00 44.26 2.69
4322 19348 0.245539 GCAGTGTGCAGCCATTTCAT 59.754 50.000 0.00 0.00 44.26 2.57
4323 19349 1.990799 CAGTGTGCAGCCATTTCATG 58.009 50.000 0.00 0.00 0.00 3.07
4324 19350 1.542472 CAGTGTGCAGCCATTTCATGA 59.458 47.619 0.00 0.00 0.00 3.07
4325 19351 1.542915 AGTGTGCAGCCATTTCATGAC 59.457 47.619 0.00 0.00 0.00 3.06
4326 19352 1.270274 GTGTGCAGCCATTTCATGACA 59.730 47.619 0.00 0.00 0.00 3.58
4327 19353 1.542472 TGTGCAGCCATTTCATGACAG 59.458 47.619 0.00 0.00 0.00 3.51
4328 19354 1.814394 GTGCAGCCATTTCATGACAGA 59.186 47.619 0.00 0.00 0.00 3.41
4329 19355 1.814394 TGCAGCCATTTCATGACAGAC 59.186 47.619 0.00 0.00 0.00 3.51
4330 19356 1.133790 GCAGCCATTTCATGACAGACC 59.866 52.381 0.00 0.00 0.00 3.85
4331 19357 1.747355 CAGCCATTTCATGACAGACCC 59.253 52.381 0.00 0.00 0.00 4.46
4332 19358 1.637553 AGCCATTTCATGACAGACCCT 59.362 47.619 0.00 0.00 0.00 4.34
4333 19359 2.019984 GCCATTTCATGACAGACCCTC 58.980 52.381 0.00 0.00 0.00 4.30
4334 19360 2.283298 CCATTTCATGACAGACCCTCG 58.717 52.381 0.00 0.00 0.00 4.63
4335 19361 2.093500 CCATTTCATGACAGACCCTCGA 60.093 50.000 0.00 0.00 0.00 4.04
4336 19362 3.599343 CATTTCATGACAGACCCTCGAA 58.401 45.455 0.00 0.00 0.00 3.71
4337 19363 3.981071 TTTCATGACAGACCCTCGAAT 57.019 42.857 0.00 0.00 0.00 3.34
4338 19364 2.967599 TCATGACAGACCCTCGAATG 57.032 50.000 0.00 0.00 0.00 2.67
4339 19365 1.134699 TCATGACAGACCCTCGAATGC 60.135 52.381 0.00 0.00 0.00 3.56
4340 19366 0.179000 ATGACAGACCCTCGAATGCC 59.821 55.000 0.00 0.00 0.00 4.40
4341 19367 0.904865 TGACAGACCCTCGAATGCCT 60.905 55.000 0.00 0.00 0.00 4.75
4342 19368 0.460987 GACAGACCCTCGAATGCCTG 60.461 60.000 0.00 0.00 0.00 4.85
4343 19369 1.817099 CAGACCCTCGAATGCCTGC 60.817 63.158 0.00 0.00 0.00 4.85
4344 19370 2.892425 GACCCTCGAATGCCTGCG 60.892 66.667 0.00 0.00 0.00 5.18
4350 19376 4.101790 CGAATGCCTGCGCGGTTT 62.102 61.111 16.49 11.08 38.08 3.27
4351 19377 2.504681 GAATGCCTGCGCGGTTTG 60.505 61.111 16.49 0.38 38.08 2.93
4352 19378 4.722855 AATGCCTGCGCGGTTTGC 62.723 61.111 16.49 12.25 38.08 3.68
4356 19382 4.054825 CCTGCGCGGTTTGCCATT 62.055 61.111 16.49 0.00 42.08 3.16
4357 19383 2.806198 CTGCGCGGTTTGCCATTG 60.806 61.111 8.83 0.00 42.08 2.82
4392 19418 8.196802 CAATTGTGCAAATCATGATGAATTCT 57.803 30.769 9.46 0.00 0.00 2.40
4393 19419 8.664798 CAATTGTGCAAATCATGATGAATTCTT 58.335 29.630 9.46 0.00 0.00 2.52
4394 19420 8.786826 ATTGTGCAAATCATGATGAATTCTTT 57.213 26.923 9.46 0.00 0.00 2.52
4395 19421 7.821595 TGTGCAAATCATGATGAATTCTTTC 57.178 32.000 9.46 4.67 0.00 2.62
4396 19422 6.814644 TGTGCAAATCATGATGAATTCTTTCC 59.185 34.615 9.46 0.00 0.00 3.13
4397 19423 6.814644 GTGCAAATCATGATGAATTCTTTCCA 59.185 34.615 9.46 0.00 0.00 3.53
4398 19424 7.494625 GTGCAAATCATGATGAATTCTTTCCAT 59.505 33.333 9.46 2.39 0.00 3.41
4399 19425 8.044309 TGCAAATCATGATGAATTCTTTCCATT 58.956 29.630 9.46 0.00 0.00 3.16
4400 19426 9.537192 GCAAATCATGATGAATTCTTTCCATTA 57.463 29.630 9.46 0.00 0.00 1.90
4415 19441 9.847224 TTCTTTCCATTACTTAGAAGAACACTT 57.153 29.630 0.00 0.00 0.00 3.16
4416 19442 9.490379 TCTTTCCATTACTTAGAAGAACACTTC 57.510 33.333 0.00 0.00 39.94 3.01
4417 19443 9.273016 CTTTCCATTACTTAGAAGAACACTTCA 57.727 33.333 11.59 0.00 41.48 3.02
4418 19444 8.603242 TTCCATTACTTAGAAGAACACTTCAC 57.397 34.615 11.59 0.00 41.48 3.18
4419 19445 7.732025 TCCATTACTTAGAAGAACACTTCACA 58.268 34.615 11.59 0.00 41.48 3.58
4420 19446 8.375506 TCCATTACTTAGAAGAACACTTCACAT 58.624 33.333 11.59 0.00 41.48 3.21
4421 19447 8.660373 CCATTACTTAGAAGAACACTTCACATC 58.340 37.037 11.59 0.00 41.48 3.06
4422 19448 7.869016 TTACTTAGAAGAACACTTCACATCG 57.131 36.000 11.59 0.00 41.48 3.84
4423 19449 5.230942 ACTTAGAAGAACACTTCACATCGG 58.769 41.667 11.59 0.67 41.48 4.18
4424 19450 3.045601 AGAAGAACACTTCACATCGGG 57.954 47.619 11.59 0.00 41.48 5.14
4425 19451 2.632996 AGAAGAACACTTCACATCGGGA 59.367 45.455 11.59 0.00 41.48 5.14
4426 19452 3.071023 AGAAGAACACTTCACATCGGGAA 59.929 43.478 11.59 0.00 41.48 3.97
4427 19453 3.485463 AGAACACTTCACATCGGGAAA 57.515 42.857 0.00 0.00 0.00 3.13
4428 19454 3.815809 AGAACACTTCACATCGGGAAAA 58.184 40.909 0.00 0.00 0.00 2.29
4429 19455 3.815401 AGAACACTTCACATCGGGAAAAG 59.185 43.478 0.00 0.00 0.00 2.27
4430 19456 2.504367 ACACTTCACATCGGGAAAAGG 58.496 47.619 0.00 0.00 0.00 3.11
4431 19457 1.812571 CACTTCACATCGGGAAAAGGG 59.187 52.381 0.00 0.00 0.00 3.95
4432 19458 1.423921 ACTTCACATCGGGAAAAGGGT 59.576 47.619 0.00 0.00 0.00 4.34
4433 19459 2.640826 ACTTCACATCGGGAAAAGGGTA 59.359 45.455 0.00 0.00 0.00 3.69
4434 19460 2.773993 TCACATCGGGAAAAGGGTAC 57.226 50.000 0.00 0.00 0.00 3.34
4435 19461 2.262637 TCACATCGGGAAAAGGGTACT 58.737 47.619 0.00 0.00 0.00 2.73
4436 19462 2.640826 TCACATCGGGAAAAGGGTACTT 59.359 45.455 0.00 0.00 38.99 2.24
4447 19473 4.529716 AAAGGGTACTTTTGGTCCTCAA 57.470 40.909 0.00 0.00 44.26 3.02
4448 19474 4.741928 AAGGGTACTTTTGGTCCTCAAT 57.258 40.909 0.00 0.00 34.98 2.57
4449 19475 4.034285 AGGGTACTTTTGGTCCTCAATG 57.966 45.455 0.00 0.00 34.98 2.82
4450 19476 3.397955 AGGGTACTTTTGGTCCTCAATGT 59.602 43.478 0.00 0.00 34.98 2.71
4451 19477 3.756963 GGGTACTTTTGGTCCTCAATGTC 59.243 47.826 0.00 0.00 34.98 3.06
4452 19478 4.394729 GGTACTTTTGGTCCTCAATGTCA 58.605 43.478 0.00 0.00 34.98 3.58
4453 19479 5.010282 GGTACTTTTGGTCCTCAATGTCAT 58.990 41.667 0.00 0.00 34.98 3.06
4454 19480 5.476945 GGTACTTTTGGTCCTCAATGTCATT 59.523 40.000 0.00 0.00 34.98 2.57
4455 19481 6.015434 GGTACTTTTGGTCCTCAATGTCATTT 60.015 38.462 0.00 0.00 34.98 2.32
4456 19482 6.484364 ACTTTTGGTCCTCAATGTCATTTT 57.516 33.333 0.00 0.00 34.98 1.82
4457 19483 6.515832 ACTTTTGGTCCTCAATGTCATTTTC 58.484 36.000 0.00 0.00 34.98 2.29
4458 19484 6.098124 ACTTTTGGTCCTCAATGTCATTTTCA 59.902 34.615 0.00 0.00 34.98 2.69
4459 19485 6.669125 TTTGGTCCTCAATGTCATTTTCAT 57.331 33.333 0.00 0.00 34.98 2.57
4460 19486 5.902613 TGGTCCTCAATGTCATTTTCATC 57.097 39.130 0.00 0.00 0.00 2.92
4461 19487 5.573219 TGGTCCTCAATGTCATTTTCATCT 58.427 37.500 0.00 0.00 0.00 2.90
4462 19488 6.012113 TGGTCCTCAATGTCATTTTCATCTT 58.988 36.000 0.00 0.00 0.00 2.40
4463 19489 6.494491 TGGTCCTCAATGTCATTTTCATCTTT 59.506 34.615 0.00 0.00 0.00 2.52
4464 19490 7.669304 TGGTCCTCAATGTCATTTTCATCTTTA 59.331 33.333 0.00 0.00 0.00 1.85
4465 19491 8.689972 GGTCCTCAATGTCATTTTCATCTTTAT 58.310 33.333 0.00 0.00 0.00 1.40
4466 19492 9.512435 GTCCTCAATGTCATTTTCATCTTTATG 57.488 33.333 0.00 0.00 0.00 1.90
4467 19493 8.689061 TCCTCAATGTCATTTTCATCTTTATGG 58.311 33.333 0.00 0.00 33.61 2.74
4468 19494 8.689061 CCTCAATGTCATTTTCATCTTTATGGA 58.311 33.333 0.00 0.00 33.61 3.41
4469 19495 9.731819 CTCAATGTCATTTTCATCTTTATGGAG 57.268 33.333 0.00 0.00 33.61 3.86
4470 19496 8.192774 TCAATGTCATTTTCATCTTTATGGAGC 58.807 33.333 0.00 0.00 33.61 4.70
4471 19497 7.649533 ATGTCATTTTCATCTTTATGGAGCA 57.350 32.000 0.00 0.00 33.61 4.26
4472 19498 7.649533 TGTCATTTTCATCTTTATGGAGCAT 57.350 32.000 0.00 0.00 33.61 3.79
4473 19499 7.485810 TGTCATTTTCATCTTTATGGAGCATG 58.514 34.615 0.00 0.00 33.61 4.06
4474 19500 7.339976 TGTCATTTTCATCTTTATGGAGCATGA 59.660 33.333 0.00 0.00 33.61 3.07
4475 19501 7.646922 GTCATTTTCATCTTTATGGAGCATGAC 59.353 37.037 0.00 0.00 33.97 3.06
4476 19502 7.558807 TCATTTTCATCTTTATGGAGCATGACT 59.441 33.333 0.00 0.00 33.61 3.41
4477 19503 7.707624 TTTTCATCTTTATGGAGCATGACTT 57.292 32.000 0.00 0.00 33.61 3.01
4478 19504 6.688637 TTCATCTTTATGGAGCATGACTTG 57.311 37.500 0.00 0.00 33.61 3.16
4479 19505 5.128205 TCATCTTTATGGAGCATGACTTGG 58.872 41.667 0.00 0.00 33.61 3.61
4480 19506 3.282021 TCTTTATGGAGCATGACTTGGC 58.718 45.455 0.00 0.00 0.00 4.52
4481 19507 2.804986 TTATGGAGCATGACTTGGCA 57.195 45.000 0.00 0.00 0.00 4.92
4482 19508 2.804986 TATGGAGCATGACTTGGCAA 57.195 45.000 0.00 0.00 0.00 4.52
4483 19509 1.927487 ATGGAGCATGACTTGGCAAA 58.073 45.000 0.00 0.00 0.00 3.68
4484 19510 1.702182 TGGAGCATGACTTGGCAAAA 58.298 45.000 0.00 0.00 0.00 2.44
4485 19511 1.614903 TGGAGCATGACTTGGCAAAAG 59.385 47.619 0.00 0.00 0.00 2.27
4486 19512 1.670967 GGAGCATGACTTGGCAAAAGC 60.671 52.381 0.00 1.28 0.00 3.51
4487 19513 0.038892 AGCATGACTTGGCAAAAGCG 60.039 50.000 0.00 0.00 0.00 4.68
4488 19514 0.039256 GCATGACTTGGCAAAAGCGA 60.039 50.000 0.00 0.00 0.00 4.93
4489 19515 1.973138 CATGACTTGGCAAAAGCGAG 58.027 50.000 0.00 0.00 0.00 5.03
4490 19516 1.536766 CATGACTTGGCAAAAGCGAGA 59.463 47.619 0.00 0.00 0.00 4.04
4491 19517 1.674359 TGACTTGGCAAAAGCGAGAA 58.326 45.000 0.00 0.00 0.00 2.87
4492 19518 2.020720 TGACTTGGCAAAAGCGAGAAA 58.979 42.857 0.00 0.00 0.00 2.52
4493 19519 2.622942 TGACTTGGCAAAAGCGAGAAAT 59.377 40.909 0.00 0.00 0.00 2.17
4494 19520 3.818210 TGACTTGGCAAAAGCGAGAAATA 59.182 39.130 0.00 0.00 0.00 1.40
4495 19521 4.458989 TGACTTGGCAAAAGCGAGAAATAT 59.541 37.500 0.00 0.00 0.00 1.28
4496 19522 4.737054 ACTTGGCAAAAGCGAGAAATATG 58.263 39.130 0.00 0.00 0.00 1.78
4497 19523 4.458989 ACTTGGCAAAAGCGAGAAATATGA 59.541 37.500 0.00 0.00 0.00 2.15
4498 19524 5.048083 ACTTGGCAAAAGCGAGAAATATGAA 60.048 36.000 0.00 0.00 0.00 2.57
4499 19525 4.985413 TGGCAAAAGCGAGAAATATGAAG 58.015 39.130 0.00 0.00 0.00 3.02
4500 19526 3.793492 GGCAAAAGCGAGAAATATGAAGC 59.207 43.478 0.00 0.00 0.00 3.86
4501 19527 4.439289 GGCAAAAGCGAGAAATATGAAGCT 60.439 41.667 0.00 0.00 36.40 3.74
4502 19528 4.498323 GCAAAAGCGAGAAATATGAAGCTG 59.502 41.667 0.00 0.00 34.94 4.24
4503 19529 4.889832 AAAGCGAGAAATATGAAGCTGG 57.110 40.909 0.00 0.00 34.94 4.85
4504 19530 3.550437 AGCGAGAAATATGAAGCTGGT 57.450 42.857 0.00 0.00 33.31 4.00
4505 19531 3.201290 AGCGAGAAATATGAAGCTGGTG 58.799 45.455 0.00 0.00 33.31 4.17
4506 19532 2.939103 GCGAGAAATATGAAGCTGGTGT 59.061 45.455 0.00 0.00 0.00 4.16
4507 19533 3.375299 GCGAGAAATATGAAGCTGGTGTT 59.625 43.478 0.00 0.00 0.00 3.32
4508 19534 4.570772 GCGAGAAATATGAAGCTGGTGTTA 59.429 41.667 0.00 0.00 0.00 2.41
4509 19535 5.237344 GCGAGAAATATGAAGCTGGTGTTAT 59.763 40.000 0.00 0.00 0.00 1.89
4510 19536 6.653183 CGAGAAATATGAAGCTGGTGTTATG 58.347 40.000 0.00 0.00 0.00 1.90
4511 19537 6.479990 CGAGAAATATGAAGCTGGTGTTATGA 59.520 38.462 0.00 0.00 0.00 2.15
4512 19538 7.011389 CGAGAAATATGAAGCTGGTGTTATGAA 59.989 37.037 0.00 0.00 0.00 2.57
4513 19539 7.989826 AGAAATATGAAGCTGGTGTTATGAAC 58.010 34.615 0.00 0.00 0.00 3.18
4514 19540 5.991328 ATATGAAGCTGGTGTTATGAACG 57.009 39.130 0.00 0.00 0.00 3.95
4515 19541 3.394674 TGAAGCTGGTGTTATGAACGA 57.605 42.857 0.00 0.00 0.00 3.85
4516 19542 3.734463 TGAAGCTGGTGTTATGAACGAA 58.266 40.909 0.00 0.00 0.00 3.85
4517 19543 4.130857 TGAAGCTGGTGTTATGAACGAAA 58.869 39.130 0.00 0.00 0.00 3.46
4518 19544 4.759693 TGAAGCTGGTGTTATGAACGAAAT 59.240 37.500 0.00 0.00 0.00 2.17
4519 19545 5.935206 TGAAGCTGGTGTTATGAACGAAATA 59.065 36.000 0.00 0.00 0.00 1.40
4520 19546 6.597672 TGAAGCTGGTGTTATGAACGAAATAT 59.402 34.615 0.00 0.00 0.00 1.28
4521 19547 6.363577 AGCTGGTGTTATGAACGAAATATG 57.636 37.500 0.00 0.00 0.00 1.78
4522 19548 4.970003 GCTGGTGTTATGAACGAAATATGC 59.030 41.667 0.00 0.00 0.00 3.14
4523 19549 5.493133 TGGTGTTATGAACGAAATATGCC 57.507 39.130 0.00 0.00 0.00 4.40
4524 19550 4.336993 TGGTGTTATGAACGAAATATGCCC 59.663 41.667 0.00 0.00 0.00 5.36
4525 19551 4.578928 GGTGTTATGAACGAAATATGCCCT 59.421 41.667 0.00 0.00 0.00 5.19
4526 19552 5.761234 GGTGTTATGAACGAAATATGCCCTA 59.239 40.000 0.00 0.00 0.00 3.53
4527 19553 6.073222 GGTGTTATGAACGAAATATGCCCTAG 60.073 42.308 0.00 0.00 0.00 3.02
4528 19554 6.704493 GTGTTATGAACGAAATATGCCCTAGA 59.296 38.462 0.00 0.00 0.00 2.43
4529 19555 6.929049 TGTTATGAACGAAATATGCCCTAGAG 59.071 38.462 0.00 0.00 0.00 2.43
4530 19556 4.336889 TGAACGAAATATGCCCTAGAGG 57.663 45.455 0.00 0.00 39.47 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.131596 TGCCAAAGAAGTAGTTACCACAC 58.868 43.478 0.00 0.00 0.00 3.82
55 60 2.559698 TTGCGTTTCCTTCTGATCCA 57.440 45.000 0.00 0.00 0.00 3.41
70 75 2.642139 AAGTGCTCCATGAAATTGCG 57.358 45.000 0.00 0.00 0.00 4.85
246 253 6.405842 CCTTTCATGTTTGGCCTATTACCTTC 60.406 42.308 3.32 0.00 0.00 3.46
288 295 2.556766 TGGTATGTCTCCCACCAATCA 58.443 47.619 0.00 0.00 39.36 2.57
295 302 2.307686 GTCCCTTTTGGTATGTCTCCCA 59.692 50.000 0.00 0.00 38.10 4.37
308 315 1.740296 CGCCGTCATCGTCCCTTTT 60.740 57.895 0.00 0.00 35.01 2.27
368 375 9.264719 CTAACAACATCATATATCTTGCACAGA 57.735 33.333 0.00 0.00 35.33 3.41
401 408 3.221771 CCTCCTATCCTCAGTGTCTCAG 58.778 54.545 0.00 0.00 0.00 3.35
422 429 0.620556 TTCAGGTCTGGATCAAGCCC 59.379 55.000 6.88 0.00 0.00 5.19
463 470 3.204382 CCCTTCTCTCTAGTTCCTCTCCT 59.796 52.174 0.00 0.00 0.00 3.69
464 471 3.562182 CCCTTCTCTCTAGTTCCTCTCC 58.438 54.545 0.00 0.00 0.00 3.71
465 472 3.562182 CCCCTTCTCTCTAGTTCCTCTC 58.438 54.545 0.00 0.00 0.00 3.20
474 481 0.470080 CATCCGCCCCCTTCTCTCTA 60.470 60.000 0.00 0.00 0.00 2.43
490 500 1.076705 GCCCCTTTGTCCTCCCATC 60.077 63.158 0.00 0.00 0.00 3.51
510 520 2.423446 GTGGGAGGATGGCTAGCG 59.577 66.667 9.00 0.00 0.00 4.26
513 523 0.691078 GAGGTGTGGGAGGATGGCTA 60.691 60.000 0.00 0.00 0.00 3.93
576 586 2.293122 GGGCATTTTTGGTTTTTCCTGC 59.707 45.455 0.00 0.00 37.07 4.85
655 666 0.681887 TGTTCTATCAGGCCCGTCGA 60.682 55.000 0.00 0.00 0.00 4.20
666 677 3.062639 CGTGTCTGGCAATGTGTTCTATC 59.937 47.826 0.00 0.00 0.00 2.08
762 773 0.541863 CCTCGCCCCTGTATTCTTGT 59.458 55.000 0.00 0.00 0.00 3.16
798 824 4.100084 TCGCTCCCGGACGACCTA 62.100 66.667 0.73 0.00 32.45 3.08
828 854 4.023707 GGATCGATTCCTTGATGCGATTTT 60.024 41.667 0.00 0.00 41.21 1.82
829 855 3.499918 GGATCGATTCCTTGATGCGATTT 59.500 43.478 0.00 0.00 41.21 2.17
858 884 2.037367 AGAGCTCAGGCACCGGTA 59.963 61.111 17.77 0.00 41.70 4.02
862 888 1.516892 CTCTCAGAGCTCAGGCACC 59.483 63.158 17.77 0.00 41.70 5.01
882 908 2.104281 AGAAACGAAGCACCCTACAAGT 59.896 45.455 0.00 0.00 0.00 3.16
1187 1221 3.745803 GCTCAGTTGCTGCAGGCC 61.746 66.667 17.12 0.00 40.92 5.19
1211 1245 0.731514 GTTCGATGTGGCTCGACGAA 60.732 55.000 13.41 13.41 46.53 3.85
1296 1338 9.120538 GGCATAGATTCCTACAACTGATAAAAA 57.879 33.333 0.00 0.00 0.00 1.94
1311 1353 4.311816 CACATGTTTGGGCATAGATTCC 57.688 45.455 0.00 0.00 0.00 3.01
1489 1551 7.994425 TTTCTTACCAAATCAACATGCTAGA 57.006 32.000 0.00 0.00 0.00 2.43
1564 1627 8.883731 CGACTGTCCTAATTTGATCAACTATTT 58.116 33.333 7.89 2.83 0.00 1.40
1568 1631 5.794894 ACGACTGTCCTAATTTGATCAACT 58.205 37.500 7.89 0.00 0.00 3.16
1655 1718 2.504367 TGGTAGGCTGAAAAGCTTGAC 58.496 47.619 0.00 0.00 34.73 3.18
1797 4280 9.723601 ATCAGTACATGCCAAAATTAAATTGTT 57.276 25.926 0.00 0.00 0.00 2.83
1811 7181 5.468540 TCTACCACATATCAGTACATGCC 57.531 43.478 0.00 0.00 0.00 4.40
2011 13084 2.531206 GTGCTAGTCCTAACAGCTTCG 58.469 52.381 0.00 0.00 36.26 3.79
2085 13158 4.626604 TGGTTCGCGTAAAATTTCTATCGT 59.373 37.500 5.77 0.00 0.00 3.73
2210 13283 1.022735 CTTGACAGCATGAGCATCCC 58.977 55.000 0.00 0.00 45.49 3.85
2233 13306 2.922740 TTGTAACTGACCTGGGTGAC 57.077 50.000 0.00 0.00 0.00 3.67
2239 13312 7.651808 AGTTCAATTTGATTGTAACTGACCTG 58.348 34.615 0.00 0.00 38.24 4.00
2257 13330 0.779997 ACCTTGGCCCTGAGTTCAAT 59.220 50.000 0.00 0.00 0.00 2.57
2293 13366 4.393834 TCAAATCACCGATGGAAAAGACA 58.606 39.130 0.00 0.00 0.00 3.41
2530 13603 4.403734 TGTCTTCAAAGTCCCCATAAACC 58.596 43.478 0.00 0.00 0.00 3.27
2747 13824 1.353694 AGCAGGCAGAAGAAGACCATT 59.646 47.619 0.00 0.00 0.00 3.16
2839 13934 2.213499 AGTAAACACAGCACTGACAGC 58.787 47.619 4.31 0.00 0.00 4.40
2840 13935 2.472861 CGAGTAAACACAGCACTGACAG 59.527 50.000 4.31 0.00 0.00 3.51
2841 13936 2.469826 CGAGTAAACACAGCACTGACA 58.530 47.619 4.31 0.00 0.00 3.58
2842 13937 1.192534 GCGAGTAAACACAGCACTGAC 59.807 52.381 4.31 0.00 0.00 3.51
2843 13938 1.497991 GCGAGTAAACACAGCACTGA 58.502 50.000 4.31 0.00 0.00 3.41
2844 13939 0.512952 GGCGAGTAAACACAGCACTG 59.487 55.000 0.00 0.00 0.00 3.66
2845 13940 0.393077 AGGCGAGTAAACACAGCACT 59.607 50.000 0.00 0.00 0.00 4.40
2846 13941 0.790814 GAGGCGAGTAAACACAGCAC 59.209 55.000 0.00 0.00 0.00 4.40
3179 14493 3.972706 CGAAATCGACTTCGTTGTCAT 57.027 42.857 19.96 0.00 42.53 3.06
3256 14570 2.028420 ATGCTGCAGTCTATTTCGCA 57.972 45.000 16.64 4.61 0.00 5.10
3276 14590 3.282885 GGCTAATAGCTTGGCAAGAACT 58.717 45.455 30.45 19.95 41.99 3.01
3297 14611 4.767255 GCAGACACCCTCGGCAGG 62.767 72.222 0.00 0.00 39.70 4.85
3551 18457 2.995258 TCACAAGCCGATACCGTTTTAC 59.005 45.455 0.00 0.00 0.00 2.01
3559 18465 4.776743 CTTGCAATATCACAAGCCGATAC 58.223 43.478 0.00 0.00 37.11 2.24
3574 18480 7.334171 GGTAAAAATGGAAATAGTGCTTGCAAT 59.666 33.333 0.00 0.41 0.00 3.56
3584 18490 8.124199 GCATTGCATTGGTAAAAATGGAAATAG 58.876 33.333 10.41 3.70 46.54 1.73
3594 18500 3.070734 ACCACAGCATTGCATTGGTAAAA 59.929 39.130 24.94 0.00 41.84 1.52
3662 18570 1.882167 GCGAGCAGGCAGAGATGTC 60.882 63.158 0.00 0.00 0.00 3.06
3678 18586 1.007387 GAGGGTGCTTTGTTTGGCG 60.007 57.895 0.00 0.00 0.00 5.69
3704 18612 3.891586 GACTTCGCTCCGTCGTGCA 62.892 63.158 7.94 0.00 0.00 4.57
3705 18613 3.173240 GACTTCGCTCCGTCGTGC 61.173 66.667 0.00 0.00 0.00 5.34
3717 18625 6.697892 CCTCCTACATAATTTGAGACGACTTC 59.302 42.308 0.00 0.00 0.00 3.01
3720 18628 4.745620 GCCTCCTACATAATTTGAGACGAC 59.254 45.833 0.00 0.00 0.00 4.34
3762 18685 6.134535 AGAACAACCAGATGTACCCAAATA 57.865 37.500 0.00 0.00 32.02 1.40
3763 18686 4.998051 AGAACAACCAGATGTACCCAAAT 58.002 39.130 0.00 0.00 32.02 2.32
3764 18687 4.447138 AGAACAACCAGATGTACCCAAA 57.553 40.909 0.00 0.00 32.02 3.28
3938 18963 0.818296 TTAGCTCTTCACGGCTCTCC 59.182 55.000 0.00 0.00 39.65 3.71
3941 18966 1.855360 CGATTTAGCTCTTCACGGCTC 59.145 52.381 0.00 0.00 39.65 4.70
3953 18978 5.121768 TCAAGTTTTAGTGAGCCGATTTAGC 59.878 40.000 0.00 0.00 0.00 3.09
3955 18980 6.721571 CTCAAGTTTTAGTGAGCCGATTTA 57.278 37.500 0.00 0.00 35.23 1.40
3969 18994 3.633525 TGATGTTGCTCAGCTCAAGTTTT 59.366 39.130 0.00 0.00 33.14 2.43
3975 19000 1.471287 GCATTGATGTTGCTCAGCTCA 59.529 47.619 0.00 0.00 37.14 4.26
3986 19011 5.075493 ACTCCTTGAGAAAAGCATTGATGT 58.925 37.500 0.00 0.00 33.32 3.06
4006 19031 2.233305 TCCTCCCTGTCACCTAACTC 57.767 55.000 0.00 0.00 0.00 3.01
4011 19036 1.079490 TCAAGATCCTCCCTGTCACCT 59.921 52.381 0.00 0.00 0.00 4.00
4013 19038 1.134965 CGTCAAGATCCTCCCTGTCAC 60.135 57.143 0.00 0.00 0.00 3.67
4029 19054 1.001974 CATTCCTTGGTCTGACCGTCA 59.998 52.381 21.15 7.58 42.58 4.35
4052 19077 0.404426 TCTCTCACCTGGTCCTTCGA 59.596 55.000 0.00 0.00 0.00 3.71
4053 19078 0.814457 CTCTCTCACCTGGTCCTTCG 59.186 60.000 0.00 0.00 0.00 3.79
4054 19079 2.223803 TCTCTCTCACCTGGTCCTTC 57.776 55.000 0.00 0.00 0.00 3.46
4055 19080 2.465813 CATCTCTCTCACCTGGTCCTT 58.534 52.381 0.00 0.00 0.00 3.36
4056 19081 1.342874 CCATCTCTCTCACCTGGTCCT 60.343 57.143 0.00 0.00 0.00 3.85
4087 19112 5.869344 GCATGTAATTATCGATGCAGTCCTA 59.131 40.000 8.54 0.00 40.78 2.94
4113 19138 1.719063 TTGGCTCCTGGTCCAGCTTT 61.719 55.000 13.99 0.00 35.82 3.51
4119 19144 3.087370 ACTTTATTTGGCTCCTGGTCC 57.913 47.619 0.00 0.00 0.00 4.46
4125 19150 3.053917 TCCCACCTACTTTATTTGGCTCC 60.054 47.826 0.00 0.00 0.00 4.70
4131 19156 6.160459 AGTCCATGATCCCACCTACTTTATTT 59.840 38.462 0.00 0.00 0.00 1.40
4132 19157 5.672194 AGTCCATGATCCCACCTACTTTATT 59.328 40.000 0.00 0.00 0.00 1.40
4154 19179 2.006888 CGATGTTGCCGTGGATAAAGT 58.993 47.619 0.00 0.00 0.00 2.66
4157 19182 2.613026 ATCGATGTTGCCGTGGATAA 57.387 45.000 0.00 0.00 0.00 1.75
4165 19190 4.900635 AATTCACCTTATCGATGTTGCC 57.099 40.909 8.54 0.00 0.00 4.52
4193 19219 5.815233 TTCCAGAGATCCCATAGACAATC 57.185 43.478 0.00 0.00 0.00 2.67
4200 19226 3.848377 CCCATCATTCCAGAGATCCCATA 59.152 47.826 0.00 0.00 0.00 2.74
4202 19228 2.060275 CCCATCATTCCAGAGATCCCA 58.940 52.381 0.00 0.00 0.00 4.37
4206 19232 6.276330 TGGATAAATCCCATCATTCCAGAGAT 59.724 38.462 6.54 0.00 46.59 2.75
4217 19243 4.401022 TGCTGTCATGGATAAATCCCATC 58.599 43.478 6.54 0.00 46.59 3.51
4223 19249 4.090761 ACCGATGCTGTCATGGATAAAT 57.909 40.909 0.00 0.00 31.96 1.40
4267 19293 2.176055 GTCGCTCGCTTGTCTCGA 59.824 61.111 0.00 0.00 34.52 4.04
4278 19304 1.069159 TCTTCTGTCGTTCTGTCGCTC 60.069 52.381 0.00 0.00 0.00 5.03
4289 19315 1.143305 CACTGCAACCTCTTCTGTCG 58.857 55.000 0.00 0.00 0.00 4.35
4290 19316 1.869767 CACACTGCAACCTCTTCTGTC 59.130 52.381 0.00 0.00 0.00 3.51
4291 19317 1.959042 CACACTGCAACCTCTTCTGT 58.041 50.000 0.00 0.00 0.00 3.41
4292 19318 0.590195 GCACACTGCAACCTCTTCTG 59.410 55.000 0.00 0.00 44.26 3.02
4293 19319 3.012560 GCACACTGCAACCTCTTCT 57.987 52.632 0.00 0.00 44.26 2.85
4302 19328 4.541466 CATGAAATGGCTGCACACTGCA 62.541 50.000 0.50 0.00 46.29 4.41
4303 19329 0.245539 ATGAAATGGCTGCACACTGC 59.754 50.000 0.50 0.00 45.29 4.40
4304 19330 1.542472 TCATGAAATGGCTGCACACTG 59.458 47.619 0.50 0.00 46.73 3.66
4305 19331 1.913778 TCATGAAATGGCTGCACACT 58.086 45.000 0.50 0.00 46.73 3.55
4314 19340 2.093500 TCGAGGGTCTGTCATGAAATGG 60.093 50.000 0.00 0.00 46.73 3.16
4316 19342 3.981071 TTCGAGGGTCTGTCATGAAAT 57.019 42.857 0.00 0.00 0.00 2.17
4317 19343 3.599343 CATTCGAGGGTCTGTCATGAAA 58.401 45.455 0.00 0.00 0.00 2.69
4318 19344 2.677902 GCATTCGAGGGTCTGTCATGAA 60.678 50.000 0.00 0.00 0.00 2.57
4319 19345 1.134699 GCATTCGAGGGTCTGTCATGA 60.135 52.381 0.00 0.00 0.00 3.07
4320 19346 1.293924 GCATTCGAGGGTCTGTCATG 58.706 55.000 0.00 0.00 0.00 3.07
4321 19347 0.179000 GGCATTCGAGGGTCTGTCAT 59.821 55.000 0.00 0.00 0.00 3.06
4322 19348 0.904865 AGGCATTCGAGGGTCTGTCA 60.905 55.000 0.00 0.00 0.00 3.58
4323 19349 0.460987 CAGGCATTCGAGGGTCTGTC 60.461 60.000 10.76 0.00 0.00 3.51
4324 19350 1.599047 CAGGCATTCGAGGGTCTGT 59.401 57.895 10.76 0.00 0.00 3.41
4325 19351 1.817099 GCAGGCATTCGAGGGTCTG 60.817 63.158 13.72 13.72 0.00 3.51
4326 19352 2.586792 GCAGGCATTCGAGGGTCT 59.413 61.111 0.00 0.00 0.00 3.85
4327 19353 2.892425 CGCAGGCATTCGAGGGTC 60.892 66.667 0.00 0.00 0.00 4.46
4333 19359 4.101790 AAACCGCGCAGGCATTCG 62.102 61.111 16.48 0.00 46.52 3.34
4334 19360 2.504681 CAAACCGCGCAGGCATTC 60.505 61.111 16.48 0.00 46.52 2.67
4335 19361 4.722855 GCAAACCGCGCAGGCATT 62.723 61.111 16.48 10.15 46.52 3.56
4340 19366 2.806198 CAATGGCAAACCGCGCAG 60.806 61.111 8.75 0.00 43.84 5.18
4367 19393 8.196802 AGAATTCATCATGATTTGCACAATTG 57.803 30.769 5.16 3.24 0.00 2.32
4368 19394 8.786826 AAGAATTCATCATGATTTGCACAATT 57.213 26.923 5.16 4.23 0.00 2.32
4369 19395 8.786826 AAAGAATTCATCATGATTTGCACAAT 57.213 26.923 5.16 0.00 0.00 2.71
4370 19396 7.332430 GGAAAGAATTCATCATGATTTGCACAA 59.668 33.333 5.16 0.00 37.29 3.33
4371 19397 6.814644 GGAAAGAATTCATCATGATTTGCACA 59.185 34.615 5.16 0.00 37.29 4.57
4372 19398 6.814644 TGGAAAGAATTCATCATGATTTGCAC 59.185 34.615 5.16 0.00 37.29 4.57
4373 19399 6.937392 TGGAAAGAATTCATCATGATTTGCA 58.063 32.000 5.16 5.67 37.29 4.08
4374 19400 8.433421 AATGGAAAGAATTCATCATGATTTGC 57.567 30.769 5.16 2.95 37.29 3.68
4389 19415 9.847224 AAGTGTTCTTCTAAGTAATGGAAAGAA 57.153 29.630 0.00 0.00 0.00 2.52
4390 19416 9.490379 GAAGTGTTCTTCTAAGTAATGGAAAGA 57.510 33.333 1.37 0.00 44.58 2.52
4406 19432 3.485463 TTCCCGATGTGAAGTGTTCTT 57.515 42.857 0.00 0.00 36.51 2.52
4407 19433 3.485463 TTTCCCGATGTGAAGTGTTCT 57.515 42.857 0.00 0.00 0.00 3.01
4408 19434 3.058224 CCTTTTCCCGATGTGAAGTGTTC 60.058 47.826 0.00 0.00 0.00 3.18
4409 19435 2.884639 CCTTTTCCCGATGTGAAGTGTT 59.115 45.455 0.00 0.00 0.00 3.32
4410 19436 2.504367 CCTTTTCCCGATGTGAAGTGT 58.496 47.619 0.00 0.00 0.00 3.55
4411 19437 1.812571 CCCTTTTCCCGATGTGAAGTG 59.187 52.381 0.00 0.00 0.00 3.16
4412 19438 1.423921 ACCCTTTTCCCGATGTGAAGT 59.576 47.619 0.00 0.00 0.00 3.01
4413 19439 2.200373 ACCCTTTTCCCGATGTGAAG 57.800 50.000 0.00 0.00 0.00 3.02
4414 19440 2.640826 AGTACCCTTTTCCCGATGTGAA 59.359 45.455 0.00 0.00 0.00 3.18
4415 19441 2.262637 AGTACCCTTTTCCCGATGTGA 58.737 47.619 0.00 0.00 0.00 3.58
4416 19442 2.781681 AGTACCCTTTTCCCGATGTG 57.218 50.000 0.00 0.00 0.00 3.21
4417 19443 3.801307 AAAGTACCCTTTTCCCGATGT 57.199 42.857 0.00 0.00 37.65 3.06
4418 19444 3.192633 CCAAAAGTACCCTTTTCCCGATG 59.807 47.826 0.00 0.00 45.55 3.84
4419 19445 3.181426 ACCAAAAGTACCCTTTTCCCGAT 60.181 43.478 0.00 0.00 45.55 4.18
4420 19446 2.175284 ACCAAAAGTACCCTTTTCCCGA 59.825 45.455 0.00 0.00 45.55 5.14
4421 19447 2.555325 GACCAAAAGTACCCTTTTCCCG 59.445 50.000 0.00 0.00 45.55 5.14
4422 19448 2.895404 GGACCAAAAGTACCCTTTTCCC 59.105 50.000 0.00 0.00 45.55 3.97
4423 19449 3.825014 GAGGACCAAAAGTACCCTTTTCC 59.175 47.826 0.00 0.00 45.55 3.13
4424 19450 4.466827 TGAGGACCAAAAGTACCCTTTTC 58.533 43.478 0.00 0.00 45.55 2.29
4426 19452 4.529716 TTGAGGACCAAAAGTACCCTTT 57.470 40.909 0.00 0.00 42.73 3.11
4427 19453 4.141018 ACATTGAGGACCAAAAGTACCCTT 60.141 41.667 0.00 0.00 38.43 3.95
4428 19454 3.397955 ACATTGAGGACCAAAAGTACCCT 59.602 43.478 0.00 0.00 38.43 4.34
4429 19455 3.756963 GACATTGAGGACCAAAAGTACCC 59.243 47.826 0.00 0.00 38.43 3.69
4430 19456 4.394729 TGACATTGAGGACCAAAAGTACC 58.605 43.478 0.00 0.00 38.43 3.34
4431 19457 6.575162 AATGACATTGAGGACCAAAAGTAC 57.425 37.500 0.00 0.00 38.43 2.73
4432 19458 7.286546 TGAAAATGACATTGAGGACCAAAAGTA 59.713 33.333 0.34 0.00 38.43 2.24
4433 19459 6.098124 TGAAAATGACATTGAGGACCAAAAGT 59.902 34.615 0.34 0.00 38.43 2.66
4434 19460 6.514947 TGAAAATGACATTGAGGACCAAAAG 58.485 36.000 0.34 0.00 38.43 2.27
4435 19461 6.477053 TGAAAATGACATTGAGGACCAAAA 57.523 33.333 0.34 0.00 38.43 2.44
4436 19462 6.494491 AGATGAAAATGACATTGAGGACCAAA 59.506 34.615 0.34 0.00 38.43 3.28
4437 19463 6.012113 AGATGAAAATGACATTGAGGACCAA 58.988 36.000 0.34 0.00 39.41 3.67
4438 19464 5.573219 AGATGAAAATGACATTGAGGACCA 58.427 37.500 0.34 0.00 0.00 4.02
4439 19465 6.521151 AAGATGAAAATGACATTGAGGACC 57.479 37.500 0.34 0.00 0.00 4.46
4440 19466 9.512435 CATAAAGATGAAAATGACATTGAGGAC 57.488 33.333 0.34 0.00 34.73 3.85
4441 19467 8.689061 CCATAAAGATGAAAATGACATTGAGGA 58.311 33.333 0.34 0.00 34.73 3.71
4442 19468 8.689061 TCCATAAAGATGAAAATGACATTGAGG 58.311 33.333 0.34 0.00 34.73 3.86
4443 19469 9.731819 CTCCATAAAGATGAAAATGACATTGAG 57.268 33.333 0.34 0.00 34.73 3.02
4444 19470 8.192774 GCTCCATAAAGATGAAAATGACATTGA 58.807 33.333 0.34 0.00 34.73 2.57
4445 19471 7.977293 TGCTCCATAAAGATGAAAATGACATTG 59.023 33.333 0.34 0.00 34.73 2.82
4446 19472 8.070034 TGCTCCATAAAGATGAAAATGACATT 57.930 30.769 0.00 0.00 34.73 2.71
4447 19473 7.649533 TGCTCCATAAAGATGAAAATGACAT 57.350 32.000 0.00 0.00 34.73 3.06
4448 19474 7.339976 TCATGCTCCATAAAGATGAAAATGACA 59.660 33.333 0.00 0.00 34.73 3.58
4449 19475 7.646922 GTCATGCTCCATAAAGATGAAAATGAC 59.353 37.037 0.00 0.00 35.17 3.06
4450 19476 7.558807 AGTCATGCTCCATAAAGATGAAAATGA 59.441 33.333 0.00 0.00 34.73 2.57
4451 19477 7.713750 AGTCATGCTCCATAAAGATGAAAATG 58.286 34.615 0.00 0.00 34.73 2.32
4452 19478 7.893124 AGTCATGCTCCATAAAGATGAAAAT 57.107 32.000 0.00 0.00 34.73 1.82
4453 19479 7.363181 CCAAGTCATGCTCCATAAAGATGAAAA 60.363 37.037 0.00 0.00 34.73 2.29
4454 19480 6.095860 CCAAGTCATGCTCCATAAAGATGAAA 59.904 38.462 0.00 0.00 34.73 2.69
4455 19481 5.591472 CCAAGTCATGCTCCATAAAGATGAA 59.409 40.000 0.00 0.00 34.73 2.57
4456 19482 5.128205 CCAAGTCATGCTCCATAAAGATGA 58.872 41.667 0.00 0.00 34.73 2.92
4457 19483 4.261489 GCCAAGTCATGCTCCATAAAGATG 60.261 45.833 0.00 0.00 0.00 2.90
4458 19484 3.887716 GCCAAGTCATGCTCCATAAAGAT 59.112 43.478 0.00 0.00 0.00 2.40
4459 19485 3.282021 GCCAAGTCATGCTCCATAAAGA 58.718 45.455 0.00 0.00 0.00 2.52
4460 19486 3.018856 TGCCAAGTCATGCTCCATAAAG 58.981 45.455 0.00 0.00 0.00 1.85
4461 19487 3.084536 TGCCAAGTCATGCTCCATAAA 57.915 42.857 0.00 0.00 0.00 1.40
4462 19488 2.804986 TGCCAAGTCATGCTCCATAA 57.195 45.000 0.00 0.00 0.00 1.90
4463 19489 2.804986 TTGCCAAGTCATGCTCCATA 57.195 45.000 0.00 0.00 0.00 2.74
4464 19490 1.927487 TTTGCCAAGTCATGCTCCAT 58.073 45.000 0.00 0.00 0.00 3.41
4465 19491 1.614903 CTTTTGCCAAGTCATGCTCCA 59.385 47.619 0.00 0.00 0.00 3.86
4466 19492 1.670967 GCTTTTGCCAAGTCATGCTCC 60.671 52.381 0.00 0.00 40.15 4.70
4467 19493 1.706443 GCTTTTGCCAAGTCATGCTC 58.294 50.000 0.00 0.00 40.15 4.26
4468 19494 0.038892 CGCTTTTGCCAAGTCATGCT 60.039 50.000 0.00 0.00 43.93 3.79
4469 19495 0.039256 TCGCTTTTGCCAAGTCATGC 60.039 50.000 0.00 0.00 43.93 4.06
4470 19496 1.536766 TCTCGCTTTTGCCAAGTCATG 59.463 47.619 0.00 0.00 43.93 3.07
4471 19497 1.896220 TCTCGCTTTTGCCAAGTCAT 58.104 45.000 0.00 0.00 43.93 3.06
4472 19498 1.674359 TTCTCGCTTTTGCCAAGTCA 58.326 45.000 0.00 0.00 43.93 3.41
4473 19499 2.774439 TTTCTCGCTTTTGCCAAGTC 57.226 45.000 0.00 0.00 43.93 3.01
4474 19500 4.458989 TCATATTTCTCGCTTTTGCCAAGT 59.541 37.500 0.00 0.00 43.93 3.16
4475 19501 4.985413 TCATATTTCTCGCTTTTGCCAAG 58.015 39.130 0.00 0.00 43.93 3.61
4476 19502 5.384063 TTCATATTTCTCGCTTTTGCCAA 57.616 34.783 0.00 0.00 43.93 4.52
4477 19503 4.675146 GCTTCATATTTCTCGCTTTTGCCA 60.675 41.667 0.00 0.00 43.93 4.92
4478 19504 3.793492 GCTTCATATTTCTCGCTTTTGCC 59.207 43.478 0.00 0.00 43.93 4.52
4479 19505 4.498323 CAGCTTCATATTTCTCGCTTTTGC 59.502 41.667 0.00 0.00 43.23 3.68
4480 19506 5.032863 CCAGCTTCATATTTCTCGCTTTTG 58.967 41.667 0.00 0.00 0.00 2.44
4481 19507 4.702131 ACCAGCTTCATATTTCTCGCTTTT 59.298 37.500 0.00 0.00 0.00 2.27
4482 19508 4.095483 CACCAGCTTCATATTTCTCGCTTT 59.905 41.667 0.00 0.00 0.00 3.51
4483 19509 3.624861 CACCAGCTTCATATTTCTCGCTT 59.375 43.478 0.00 0.00 0.00 4.68
4484 19510 3.201290 CACCAGCTTCATATTTCTCGCT 58.799 45.455 0.00 0.00 0.00 4.93
4485 19511 2.939103 ACACCAGCTTCATATTTCTCGC 59.061 45.455 0.00 0.00 0.00 5.03
4486 19512 6.479990 TCATAACACCAGCTTCATATTTCTCG 59.520 38.462 0.00 0.00 0.00 4.04
4487 19513 7.792374 TCATAACACCAGCTTCATATTTCTC 57.208 36.000 0.00 0.00 0.00 2.87
4488 19514 7.201644 CGTTCATAACACCAGCTTCATATTTCT 60.202 37.037 0.00 0.00 0.00 2.52
4489 19515 6.907212 CGTTCATAACACCAGCTTCATATTTC 59.093 38.462 0.00 0.00 0.00 2.17
4490 19516 6.597672 TCGTTCATAACACCAGCTTCATATTT 59.402 34.615 0.00 0.00 0.00 1.40
4491 19517 6.112734 TCGTTCATAACACCAGCTTCATATT 58.887 36.000 0.00 0.00 0.00 1.28
4492 19518 5.670485 TCGTTCATAACACCAGCTTCATAT 58.330 37.500 0.00 0.00 0.00 1.78
4493 19519 5.079689 TCGTTCATAACACCAGCTTCATA 57.920 39.130 0.00 0.00 0.00 2.15
4494 19520 3.937814 TCGTTCATAACACCAGCTTCAT 58.062 40.909 0.00 0.00 0.00 2.57
4495 19521 3.394674 TCGTTCATAACACCAGCTTCA 57.605 42.857 0.00 0.00 0.00 3.02
4496 19522 4.742438 TTTCGTTCATAACACCAGCTTC 57.258 40.909 0.00 0.00 0.00 3.86
4497 19523 6.677920 GCATATTTCGTTCATAACACCAGCTT 60.678 38.462 0.00 0.00 0.00 3.74
4498 19524 5.220854 GCATATTTCGTTCATAACACCAGCT 60.221 40.000 0.00 0.00 0.00 4.24
4499 19525 4.970003 GCATATTTCGTTCATAACACCAGC 59.030 41.667 0.00 0.00 0.00 4.85
4500 19526 5.505654 GGGCATATTTCGTTCATAACACCAG 60.506 44.000 0.00 0.00 0.00 4.00
4501 19527 4.336993 GGGCATATTTCGTTCATAACACCA 59.663 41.667 0.00 0.00 0.00 4.17
4502 19528 4.578928 AGGGCATATTTCGTTCATAACACC 59.421 41.667 0.00 0.00 0.00 4.16
4503 19529 5.751243 AGGGCATATTTCGTTCATAACAC 57.249 39.130 0.00 0.00 0.00 3.32
4504 19530 6.822442 TCTAGGGCATATTTCGTTCATAACA 58.178 36.000 0.00 0.00 0.00 2.41
4505 19531 6.369065 CCTCTAGGGCATATTTCGTTCATAAC 59.631 42.308 0.00 0.00 0.00 1.89
4506 19532 6.464222 CCTCTAGGGCATATTTCGTTCATAA 58.536 40.000 0.00 0.00 0.00 1.90
4507 19533 6.037786 CCTCTAGGGCATATTTCGTTCATA 57.962 41.667 0.00 0.00 0.00 2.15
4508 19534 4.899502 CCTCTAGGGCATATTTCGTTCAT 58.100 43.478 0.00 0.00 0.00 2.57
4509 19535 4.336889 CCTCTAGGGCATATTTCGTTCA 57.663 45.455 0.00 0.00 0.00 3.18
4521 19547 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.