Multiple sequence alignment - TraesCS3B01G583500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G583500 chr3B 100.000 4844 0 0 1 4844 811077670 811082513 0.000000e+00 8946.0
1 TraesCS3B01G583500 chr3B 84.440 1973 268 30 1514 3476 811141529 811139586 0.000000e+00 1906.0
2 TraesCS3B01G583500 chr3B 85.714 98 14 0 4442 4539 641969085 641969182 2.380000e-18 104.0
3 TraesCS3B01G583500 chr3D 95.324 2267 70 14 1464 3723 603962443 603964680 0.000000e+00 3567.0
4 TraesCS3B01G583500 chr3D 84.494 1967 268 29 1514 3468 604253149 604251208 0.000000e+00 1908.0
5 TraesCS3B01G583500 chr3D 86.065 1751 204 23 1747 3487 604143794 604142074 0.000000e+00 1845.0
6 TraesCS3B01G583500 chr3D 84.189 1752 242 22 1747 3487 604137563 604135836 0.000000e+00 1668.0
7 TraesCS3B01G583500 chr3D 82.160 1861 275 30 1614 3443 602781708 602779874 0.000000e+00 1544.0
8 TraesCS3B01G583500 chr3D 84.801 704 36 16 706 1338 603961739 603962442 4.090000e-180 641.0
9 TraesCS3B01G583500 chr3D 84.496 129 14 4 1606 1730 604288522 604288396 6.580000e-24 122.0
10 TraesCS3B01G583500 chr3D 87.640 89 9 2 1252 1338 604288753 604288665 8.580000e-18 102.0
11 TraesCS3B01G583500 chr3D 85.106 94 14 0 4446 4539 608259284 608259377 3.990000e-16 97.1
12 TraesCS3B01G583500 chr3D 84.524 84 13 0 1045 1128 604144521 604144438 3.110000e-12 84.2
13 TraesCS3B01G583500 chr3D 92.727 55 4 0 1078 1132 603964449 603964503 4.020000e-11 80.5
14 TraesCS3B01G583500 chr3A 84.378 1978 258 32 1530 3485 733726195 733724247 0.000000e+00 1893.0
15 TraesCS3B01G583500 chr3A 82.622 2014 281 35 1514 3487 733860494 733858510 0.000000e+00 1716.0
16 TraesCS3B01G583500 chr3A 83.693 1668 241 19 1828 3487 733637901 733636257 0.000000e+00 1544.0
17 TraesCS3B01G583500 chr3A 81.407 1834 279 35 1614 3425 733411367 733413160 0.000000e+00 1441.0
18 TraesCS3B01G583500 chr3A 81.373 1836 278 36 1614 3425 733436162 733437957 0.000000e+00 1437.0
19 TraesCS3B01G583500 chr3A 95.023 884 29 5 1471 2350 733480490 733481362 0.000000e+00 1375.0
20 TraesCS3B01G583500 chr3A 82.123 1611 237 25 1715 3302 733732452 733730870 0.000000e+00 1332.0
21 TraesCS3B01G583500 chr3A 93.223 546 20 10 4311 4844 733482930 733483470 0.000000e+00 787.0
22 TraesCS3B01G583500 chr3A 84.091 572 35 19 823 1338 733479911 733480482 7.240000e-138 501.0
23 TraesCS3B01G583500 chr3A 80.247 486 71 18 4376 4844 733501764 733501287 4.640000e-90 342.0
24 TraesCS3B01G583500 chr3A 87.037 162 9 8 4055 4213 733482255 733482407 6.450000e-39 172.0
25 TraesCS3B01G583500 chr3A 79.528 127 24 2 1514 1639 733521086 733520961 6.680000e-14 89.8
26 TraesCS3B01G583500 chr3A 89.333 75 3 5 4060 4133 733613864 733613794 6.680000e-14 89.8
27 TraesCS3B01G583500 chrUn 84.280 1743 223 19 1757 3487 42260160 42261863 0.000000e+00 1653.0
28 TraesCS3B01G583500 chrUn 91.926 706 51 2 1 706 76752574 76751875 0.000000e+00 983.0
29 TraesCS3B01G583500 chrUn 85.957 705 97 1 1 705 321294423 321293721 0.000000e+00 752.0
30 TraesCS3B01G583500 chrUn 85.957 705 97 1 1 705 321301039 321300337 0.000000e+00 752.0
31 TraesCS3B01G583500 chr6A 88.701 708 78 2 1 708 588610577 588611282 0.000000e+00 863.0
32 TraesCS3B01G583500 chr6A 71.289 714 167 32 10 706 529599628 529600320 1.090000e-31 148.0
33 TraesCS3B01G583500 chr6A 84.337 83 13 0 4455 4537 5607256 5607174 1.120000e-11 82.4
34 TraesCS3B01G583500 chr4A 88.418 708 79 2 1 707 83748223 83748928 0.000000e+00 850.0
35 TraesCS3B01G583500 chr4A 85.957 705 97 1 1 705 708412006 708411304 0.000000e+00 752.0
36 TraesCS3B01G583500 chr1B 87.429 708 87 1 1 708 161578165 161578870 0.000000e+00 813.0
37 TraesCS3B01G583500 chr1B 89.873 79 8 0 4462 4540 635475298 635475376 8.580000e-18 102.0
38 TraesCS3B01G583500 chr2A 90.314 382 35 1 325 706 519049844 519049465 2.600000e-137 499.0
39 TraesCS3B01G583500 chr2A 96.241 133 5 0 1338 1470 164999433 164999565 8.160000e-53 219.0
40 TraesCS3B01G583500 chr2D 76.803 707 152 10 4 705 619314179 619313480 2.110000e-103 387.0
41 TraesCS3B01G583500 chr7A 97.761 134 3 0 1337 1470 579500088 579499955 1.050000e-56 231.0
42 TraesCS3B01G583500 chr1D 93.701 127 6 1 1348 1474 473403788 473403664 6.400000e-44 189.0
43 TraesCS3B01G583500 chr7D 89.855 138 11 2 1337 1474 631283181 631283047 1.790000e-39 174.0
44 TraesCS3B01G583500 chr5B 92.000 100 4 3 1375 1473 679771769 679771673 2.350000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G583500 chr3B 811077670 811082513 4843 False 8946.00 8946 100.000000 1 4844 1 chr3B.!!$F2 4843
1 TraesCS3B01G583500 chr3B 811139586 811141529 1943 True 1906.00 1906 84.440000 1514 3476 1 chr3B.!!$R1 1962
2 TraesCS3B01G583500 chr3D 604251208 604253149 1941 True 1908.00 1908 84.494000 1514 3468 1 chr3D.!!$R3 1954
3 TraesCS3B01G583500 chr3D 604135836 604137563 1727 True 1668.00 1668 84.189000 1747 3487 1 chr3D.!!$R2 1740
4 TraesCS3B01G583500 chr3D 602779874 602781708 1834 True 1544.00 1544 82.160000 1614 3443 1 chr3D.!!$R1 1829
5 TraesCS3B01G583500 chr3D 603961739 603964680 2941 False 1429.50 3567 90.950667 706 3723 3 chr3D.!!$F2 3017
6 TraesCS3B01G583500 chr3D 604142074 604144521 2447 True 964.60 1845 85.294500 1045 3487 2 chr3D.!!$R4 2442
7 TraesCS3B01G583500 chr3A 733724247 733726195 1948 True 1893.00 1893 84.378000 1530 3485 1 chr3A.!!$R5 1955
8 TraesCS3B01G583500 chr3A 733858510 733860494 1984 True 1716.00 1716 82.622000 1514 3487 1 chr3A.!!$R7 1973
9 TraesCS3B01G583500 chr3A 733636257 733637901 1644 True 1544.00 1544 83.693000 1828 3487 1 chr3A.!!$R4 1659
10 TraesCS3B01G583500 chr3A 733411367 733413160 1793 False 1441.00 1441 81.407000 1614 3425 1 chr3A.!!$F1 1811
11 TraesCS3B01G583500 chr3A 733436162 733437957 1795 False 1437.00 1437 81.373000 1614 3425 1 chr3A.!!$F2 1811
12 TraesCS3B01G583500 chr3A 733730870 733732452 1582 True 1332.00 1332 82.123000 1715 3302 1 chr3A.!!$R6 1587
13 TraesCS3B01G583500 chr3A 733479911 733483470 3559 False 708.75 1375 89.843500 823 4844 4 chr3A.!!$F3 4021
14 TraesCS3B01G583500 chrUn 42260160 42261863 1703 False 1653.00 1653 84.280000 1757 3487 1 chrUn.!!$F1 1730
15 TraesCS3B01G583500 chrUn 76751875 76752574 699 True 983.00 983 91.926000 1 706 1 chrUn.!!$R1 705
16 TraesCS3B01G583500 chrUn 321293721 321294423 702 True 752.00 752 85.957000 1 705 1 chrUn.!!$R2 704
17 TraesCS3B01G583500 chrUn 321300337 321301039 702 True 752.00 752 85.957000 1 705 1 chrUn.!!$R3 704
18 TraesCS3B01G583500 chr6A 588610577 588611282 705 False 863.00 863 88.701000 1 708 1 chr6A.!!$F2 707
19 TraesCS3B01G583500 chr4A 83748223 83748928 705 False 850.00 850 88.418000 1 707 1 chr4A.!!$F1 706
20 TraesCS3B01G583500 chr4A 708411304 708412006 702 True 752.00 752 85.957000 1 705 1 chr4A.!!$R1 704
21 TraesCS3B01G583500 chr1B 161578165 161578870 705 False 813.00 813 87.429000 1 708 1 chr1B.!!$F1 707
22 TraesCS3B01G583500 chr2D 619313480 619314179 699 True 387.00 387 76.803000 4 705 1 chr2D.!!$R1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 800 0.035458 CTCTCCAACCCAGTCGCTTT 59.965 55.0 0.0 0.0 0.00 3.51 F
797 801 0.472471 TCTCCAACCCAGTCGCTTTT 59.528 50.0 0.0 0.0 0.00 2.27 F
1467 1727 0.667993 CTGCCAGTTCCGCTCAAAAA 59.332 50.0 0.0 0.0 0.00 1.94 F
1767 2068 1.583054 AACGCAGGAGTTGAGTTCAC 58.417 50.0 0.0 0.0 45.08 3.18 F
3452 4122 0.111061 TGCTCCCACATCACTTTGCT 59.889 50.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 3040 0.323908 CTTGGAATACCCGGGGCAAA 60.324 55.000 27.92 9.89 37.93 3.68 R
2723 3335 0.537143 TGGCTTTCCTTGTCATGCGT 60.537 50.000 0.00 0.00 0.00 5.24 R
2912 3543 1.406341 GCTTCGTAACTATGCACCCCA 60.406 52.381 0.00 0.00 0.00 4.96 R
3665 4335 0.405198 ATCAGGCATGTGGTGTTCCA 59.595 50.000 0.00 0.00 42.05 3.53 R
4277 5479 0.176680 AGACTAATGCCCAGCTCACG 59.823 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.562738 GTGGGCCAATAGAAACAAGCTT 59.437 45.455 8.40 0.00 0.00 3.74
59 60 2.519963 GCCAATAGAAACAAGCTTCGC 58.480 47.619 0.00 0.00 0.00 4.70
134 135 7.056635 CCAATGTACTTGAATACTGGGAGATT 58.943 38.462 0.00 0.00 36.97 2.40
183 184 1.223487 GACAAATGGCGGCCTCCTA 59.777 57.895 21.46 0.00 0.00 2.94
265 266 1.675641 GGGGCGTTGCAGTGAGAAT 60.676 57.895 0.00 0.00 0.00 2.40
287 288 0.541998 AGGATGGACGTCTGGTGTGA 60.542 55.000 16.46 0.00 0.00 3.58
395 396 2.173669 CGGCATCGTTCGGCTTGAT 61.174 57.895 0.00 0.00 0.00 2.57
396 397 1.643832 GGCATCGTTCGGCTTGATC 59.356 57.895 0.00 0.00 0.00 2.92
449 450 4.151883 AGCCTTGGATTTGCAAAGAGTTA 58.848 39.130 18.19 1.30 0.00 2.24
527 528 0.469705 TGCCAAGGTTGCAATCACCT 60.470 50.000 13.22 7.70 35.40 4.00
541 542 1.324383 TCACCTTGTGTAGACGCTCA 58.676 50.000 0.00 0.00 34.79 4.26
568 569 2.266055 GTAGCCCACGAGCTTGCT 59.734 61.111 0.00 0.00 41.41 3.91
589 590 0.999406 CGATTGGCCGTAGTTGTGAG 59.001 55.000 0.00 0.00 0.00 3.51
627 628 0.040646 TGGGACTCGGATGTACCTGT 59.959 55.000 9.36 0.00 41.48 4.00
642 643 4.641645 TGTCCAAGTGGGCGCCTG 62.642 66.667 28.56 16.81 44.44 4.85
733 734 4.483243 TCAAGCCGGCGGGAATCC 62.483 66.667 29.48 10.53 34.06 3.01
793 797 0.460987 CATCTCTCCAACCCAGTCGC 60.461 60.000 0.00 0.00 0.00 5.19
794 798 0.616111 ATCTCTCCAACCCAGTCGCT 60.616 55.000 0.00 0.00 0.00 4.93
796 800 0.035458 CTCTCCAACCCAGTCGCTTT 59.965 55.000 0.00 0.00 0.00 3.51
797 801 0.472471 TCTCCAACCCAGTCGCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
798 802 1.133915 TCTCCAACCCAGTCGCTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
838 864 2.665603 GTGGCCCAGTCTCTCCAC 59.334 66.667 0.00 0.00 41.66 4.02
863 890 1.063417 CCAATCTGAAATCCCCAGCCT 60.063 52.381 0.00 0.00 0.00 4.58
917 945 1.079336 GAACCCTAGACACGGCACC 60.079 63.158 0.00 0.00 0.00 5.01
1074 1134 2.333417 CCTGCAGCAACTGAGCCAG 61.333 63.158 8.66 1.16 37.52 4.85
1204 1324 6.467723 ACTAGCAAGATTGTTTGTTACTCG 57.532 37.500 0.00 0.00 0.00 4.18
1222 1342 1.601903 TCGGTTGTTCACATGCTTGTC 59.398 47.619 1.56 0.00 32.34 3.18
1338 1598 3.412386 GTGCAAGTCCACATCTAGGTTT 58.588 45.455 0.00 0.00 35.80 3.27
1339 1599 3.821033 GTGCAAGTCCACATCTAGGTTTT 59.179 43.478 0.00 0.00 35.80 2.43
1341 1601 3.191371 GCAAGTCCACATCTAGGTTTTGG 59.809 47.826 0.00 0.00 0.00 3.28
1342 1602 4.398319 CAAGTCCACATCTAGGTTTTGGT 58.602 43.478 1.09 0.00 0.00 3.67
1343 1603 5.556915 CAAGTCCACATCTAGGTTTTGGTA 58.443 41.667 1.09 0.00 0.00 3.25
1344 1604 6.180472 CAAGTCCACATCTAGGTTTTGGTAT 58.820 40.000 1.09 0.00 0.00 2.73
1345 1605 6.388619 AGTCCACATCTAGGTTTTGGTATT 57.611 37.500 1.09 0.00 0.00 1.89
1346 1606 7.504926 AGTCCACATCTAGGTTTTGGTATTA 57.495 36.000 1.09 0.00 0.00 0.98
1347 1607 7.336396 AGTCCACATCTAGGTTTTGGTATTAC 58.664 38.462 1.09 0.00 0.00 1.89
1350 1610 5.815740 CACATCTAGGTTTTGGTATTACGCT 59.184 40.000 0.00 0.00 0.00 5.07
1351 1611 6.018994 CACATCTAGGTTTTGGTATTACGCTC 60.019 42.308 0.00 0.00 0.00 5.03
1352 1612 5.927281 TCTAGGTTTTGGTATTACGCTCT 57.073 39.130 0.00 0.00 0.00 4.09
1353 1613 5.657474 TCTAGGTTTTGGTATTACGCTCTG 58.343 41.667 0.00 0.00 0.00 3.35
1354 1614 4.546829 AGGTTTTGGTATTACGCTCTGA 57.453 40.909 0.00 0.00 0.00 3.27
1355 1615 5.099042 AGGTTTTGGTATTACGCTCTGAT 57.901 39.130 0.00 0.00 0.00 2.90
1356 1616 5.116882 AGGTTTTGGTATTACGCTCTGATC 58.883 41.667 0.00 0.00 0.00 2.92
1357 1617 5.104900 AGGTTTTGGTATTACGCTCTGATCT 60.105 40.000 0.00 0.00 0.00 2.75
1358 1618 5.234543 GGTTTTGGTATTACGCTCTGATCTC 59.765 44.000 0.00 0.00 0.00 2.75
1359 1619 3.898517 TGGTATTACGCTCTGATCTCG 57.101 47.619 0.00 0.00 0.00 4.04
1360 1620 3.211865 TGGTATTACGCTCTGATCTCGT 58.788 45.455 0.00 1.46 39.88 4.18
1361 1621 3.630769 TGGTATTACGCTCTGATCTCGTT 59.369 43.478 7.82 0.00 37.61 3.85
1362 1622 4.818005 TGGTATTACGCTCTGATCTCGTTA 59.182 41.667 7.82 1.50 37.61 3.18
1363 1623 5.472478 TGGTATTACGCTCTGATCTCGTTAT 59.528 40.000 7.82 7.33 37.61 1.89
1364 1624 5.795939 GGTATTACGCTCTGATCTCGTTATG 59.204 44.000 7.82 0.00 37.61 1.90
1365 1625 4.895224 TTACGCTCTGATCTCGTTATGT 57.105 40.909 7.82 0.00 37.61 2.29
1366 1626 3.341857 ACGCTCTGATCTCGTTATGTC 57.658 47.619 0.00 0.00 31.89 3.06
1367 1627 2.033550 ACGCTCTGATCTCGTTATGTCC 59.966 50.000 0.00 0.00 31.89 4.02
1368 1628 2.605823 CGCTCTGATCTCGTTATGTCCC 60.606 54.545 0.00 0.00 0.00 4.46
1369 1629 2.625790 GCTCTGATCTCGTTATGTCCCT 59.374 50.000 0.00 0.00 0.00 4.20
1370 1630 3.305064 GCTCTGATCTCGTTATGTCCCTC 60.305 52.174 0.00 0.00 0.00 4.30
1371 1631 3.223435 TCTGATCTCGTTATGTCCCTCC 58.777 50.000 0.00 0.00 0.00 4.30
1372 1632 3.117474 TCTGATCTCGTTATGTCCCTCCT 60.117 47.826 0.00 0.00 0.00 3.69
1373 1633 3.223435 TGATCTCGTTATGTCCCTCCTC 58.777 50.000 0.00 0.00 0.00 3.71
1374 1634 3.117474 TGATCTCGTTATGTCCCTCCTCT 60.117 47.826 0.00 0.00 0.00 3.69
1375 1635 3.383698 TCTCGTTATGTCCCTCCTCTT 57.616 47.619 0.00 0.00 0.00 2.85
1376 1636 4.515028 TCTCGTTATGTCCCTCCTCTTA 57.485 45.455 0.00 0.00 0.00 2.10
1377 1637 5.063017 TCTCGTTATGTCCCTCCTCTTAT 57.937 43.478 0.00 0.00 0.00 1.73
1378 1638 5.071370 TCTCGTTATGTCCCTCCTCTTATC 58.929 45.833 0.00 0.00 0.00 1.75
1379 1639 5.063017 TCGTTATGTCCCTCCTCTTATCT 57.937 43.478 0.00 0.00 0.00 1.98
1380 1640 4.827835 TCGTTATGTCCCTCCTCTTATCTG 59.172 45.833 0.00 0.00 0.00 2.90
1381 1641 4.021894 CGTTATGTCCCTCCTCTTATCTGG 60.022 50.000 0.00 0.00 0.00 3.86
1382 1642 3.715648 ATGTCCCTCCTCTTATCTGGT 57.284 47.619 0.00 0.00 0.00 4.00
1383 1643 3.491766 TGTCCCTCCTCTTATCTGGTT 57.508 47.619 0.00 0.00 0.00 3.67
1384 1644 3.107601 TGTCCCTCCTCTTATCTGGTTG 58.892 50.000 0.00 0.00 0.00 3.77
1385 1645 3.108376 GTCCCTCCTCTTATCTGGTTGT 58.892 50.000 0.00 0.00 0.00 3.32
1386 1646 3.133183 GTCCCTCCTCTTATCTGGTTGTC 59.867 52.174 0.00 0.00 0.00 3.18
1387 1647 2.101582 CCCTCCTCTTATCTGGTTGTCG 59.898 54.545 0.00 0.00 0.00 4.35
1388 1648 3.024547 CCTCCTCTTATCTGGTTGTCGA 58.975 50.000 0.00 0.00 0.00 4.20
1389 1649 3.639094 CCTCCTCTTATCTGGTTGTCGAT 59.361 47.826 0.00 0.00 0.00 3.59
1390 1650 4.261825 CCTCCTCTTATCTGGTTGTCGATC 60.262 50.000 0.00 0.00 0.00 3.69
1391 1651 3.637229 TCCTCTTATCTGGTTGTCGATCC 59.363 47.826 0.00 0.00 0.00 3.36
1392 1652 3.639094 CCTCTTATCTGGTTGTCGATCCT 59.361 47.826 0.00 0.00 0.00 3.24
1393 1653 4.261825 CCTCTTATCTGGTTGTCGATCCTC 60.262 50.000 0.00 0.00 0.00 3.71
1394 1654 4.537751 TCTTATCTGGTTGTCGATCCTCT 58.462 43.478 0.00 0.00 0.00 3.69
1395 1655 5.691896 TCTTATCTGGTTGTCGATCCTCTA 58.308 41.667 0.00 0.00 0.00 2.43
1396 1656 5.531659 TCTTATCTGGTTGTCGATCCTCTAC 59.468 44.000 0.00 0.00 0.00 2.59
1397 1657 3.367646 TCTGGTTGTCGATCCTCTACT 57.632 47.619 0.00 0.00 0.00 2.57
1398 1658 3.017442 TCTGGTTGTCGATCCTCTACTG 58.983 50.000 0.00 0.00 0.00 2.74
1399 1659 2.099921 CTGGTTGTCGATCCTCTACTGG 59.900 54.545 0.00 0.00 0.00 4.00
1400 1660 1.202428 GGTTGTCGATCCTCTACTGGC 60.202 57.143 0.00 0.00 0.00 4.85
1401 1661 1.476891 GTTGTCGATCCTCTACTGGCA 59.523 52.381 0.00 0.00 0.00 4.92
1402 1662 1.847328 TGTCGATCCTCTACTGGCAA 58.153 50.000 0.00 0.00 0.00 4.52
1403 1663 1.476891 TGTCGATCCTCTACTGGCAAC 59.523 52.381 0.00 0.00 0.00 4.17
1405 1665 1.476891 TCGATCCTCTACTGGCAACAC 59.523 52.381 0.00 0.00 46.17 3.32
1406 1666 1.478510 CGATCCTCTACTGGCAACACT 59.521 52.381 0.00 0.00 46.17 3.55
1407 1667 2.736719 CGATCCTCTACTGGCAACACTG 60.737 54.545 0.00 0.00 46.17 3.66
1408 1668 1.717032 TCCTCTACTGGCAACACTGT 58.283 50.000 0.00 0.00 46.17 3.55
1409 1669 2.884320 TCCTCTACTGGCAACACTGTA 58.116 47.619 0.00 0.00 46.17 2.74
1410 1670 2.561419 TCCTCTACTGGCAACACTGTAC 59.439 50.000 0.00 0.00 46.17 2.90
1411 1671 2.299013 CCTCTACTGGCAACACTGTACA 59.701 50.000 0.00 0.00 46.17 2.90
1412 1672 3.579709 CTCTACTGGCAACACTGTACAG 58.420 50.000 21.44 21.44 46.17 2.74
1413 1673 2.963101 TCTACTGGCAACACTGTACAGT 59.037 45.455 22.95 22.95 46.17 3.55
1414 1674 2.710096 ACTGGCAACACTGTACAGTT 57.290 45.000 25.89 14.25 46.17 3.16
1415 1675 2.999331 ACTGGCAACACTGTACAGTTT 58.001 42.857 25.89 17.44 46.17 2.66
1416 1676 3.352648 ACTGGCAACACTGTACAGTTTT 58.647 40.909 25.89 22.34 46.17 2.43
1417 1677 3.761752 ACTGGCAACACTGTACAGTTTTT 59.238 39.130 25.89 18.08 46.17 1.94
1418 1678 4.142469 ACTGGCAACACTGTACAGTTTTTC 60.142 41.667 25.89 19.16 46.17 2.29
1419 1679 3.129638 TGGCAACACTGTACAGTTTTTCC 59.870 43.478 26.90 26.90 46.17 3.13
1420 1680 3.490249 GGCAACACTGTACAGTTTTTCCC 60.490 47.826 24.64 21.33 40.20 3.97
1421 1681 3.490249 GCAACACTGTACAGTTTTTCCCC 60.490 47.826 25.89 10.02 40.20 4.81
1422 1682 2.940158 ACACTGTACAGTTTTTCCCCC 58.060 47.619 25.89 0.00 40.20 5.40
1423 1683 2.512476 ACACTGTACAGTTTTTCCCCCT 59.488 45.455 25.89 0.00 40.20 4.79
1424 1684 3.717913 ACACTGTACAGTTTTTCCCCCTA 59.282 43.478 25.89 0.00 40.20 3.53
1425 1685 4.070009 CACTGTACAGTTTTTCCCCCTAC 58.930 47.826 25.89 0.00 40.20 3.18
1426 1686 3.978672 ACTGTACAGTTTTTCCCCCTACT 59.021 43.478 22.95 0.00 38.83 2.57
1427 1687 5.012354 CACTGTACAGTTTTTCCCCCTACTA 59.988 44.000 25.89 0.00 40.20 1.82
1428 1688 5.789054 ACTGTACAGTTTTTCCCCCTACTAT 59.211 40.000 22.95 0.00 38.83 2.12
1429 1689 6.961721 ACTGTACAGTTTTTCCCCCTACTATA 59.038 38.462 22.95 0.00 38.83 1.31
1430 1690 7.458806 ACTGTACAGTTTTTCCCCCTACTATAA 59.541 37.037 22.95 0.00 38.83 0.98
1431 1691 8.396619 TGTACAGTTTTTCCCCCTACTATAAT 57.603 34.615 0.00 0.00 0.00 1.28
1432 1692 8.269317 TGTACAGTTTTTCCCCCTACTATAATG 58.731 37.037 0.00 0.00 0.00 1.90
1433 1693 7.519347 ACAGTTTTTCCCCCTACTATAATGA 57.481 36.000 0.00 0.00 0.00 2.57
1434 1694 7.935405 ACAGTTTTTCCCCCTACTATAATGAA 58.065 34.615 0.00 0.00 0.00 2.57
1435 1695 8.395605 ACAGTTTTTCCCCCTACTATAATGAAA 58.604 33.333 0.00 0.00 0.00 2.69
1436 1696 9.250246 CAGTTTTTCCCCCTACTATAATGAAAA 57.750 33.333 0.00 0.00 0.00 2.29
1437 1697 9.831682 AGTTTTTCCCCCTACTATAATGAAAAA 57.168 29.630 0.00 0.00 37.68 1.94
1439 1699 8.832458 TTTTCCCCCTACTATAATGAAAAAGG 57.168 34.615 0.00 0.00 30.04 3.11
1440 1700 5.948842 TCCCCCTACTATAATGAAAAAGGC 58.051 41.667 0.00 0.00 0.00 4.35
1441 1701 5.433712 TCCCCCTACTATAATGAAAAAGGCA 59.566 40.000 0.00 0.00 0.00 4.75
1442 1702 5.770162 CCCCCTACTATAATGAAAAAGGCAG 59.230 44.000 0.00 0.00 0.00 4.85
1443 1703 6.410388 CCCCCTACTATAATGAAAAAGGCAGA 60.410 42.308 0.00 0.00 0.00 4.26
1444 1704 7.060421 CCCCTACTATAATGAAAAAGGCAGAA 58.940 38.462 0.00 0.00 0.00 3.02
1445 1705 7.013369 CCCCTACTATAATGAAAAAGGCAGAAC 59.987 40.741 0.00 0.00 0.00 3.01
1446 1706 7.556275 CCCTACTATAATGAAAAAGGCAGAACA 59.444 37.037 0.00 0.00 0.00 3.18
1447 1707 8.398665 CCTACTATAATGAAAAAGGCAGAACAC 58.601 37.037 0.00 0.00 0.00 3.32
1448 1708 7.158099 ACTATAATGAAAAAGGCAGAACACC 57.842 36.000 0.00 0.00 0.00 4.16
1449 1709 6.948309 ACTATAATGAAAAAGGCAGAACACCT 59.052 34.615 0.00 0.00 40.02 4.00
1450 1710 4.326504 AATGAAAAAGGCAGAACACCTG 57.673 40.909 0.00 0.00 45.67 4.00
1458 1718 2.633860 CAGAACACCTGCCAGTTCC 58.366 57.895 0.00 0.00 43.89 3.62
1459 1719 1.071471 AGAACACCTGCCAGTTCCG 59.929 57.895 0.00 0.00 43.89 4.30
1460 1720 2.594592 AACACCTGCCAGTTCCGC 60.595 61.111 0.00 0.00 0.00 5.54
1461 1721 3.120086 AACACCTGCCAGTTCCGCT 62.120 57.895 0.00 0.00 0.00 5.52
1462 1722 2.743928 CACCTGCCAGTTCCGCTC 60.744 66.667 0.00 0.00 0.00 5.03
1463 1723 3.241530 ACCTGCCAGTTCCGCTCA 61.242 61.111 0.00 0.00 0.00 4.26
1464 1724 2.032528 CCTGCCAGTTCCGCTCAA 59.967 61.111 0.00 0.00 0.00 3.02
1465 1725 1.600636 CCTGCCAGTTCCGCTCAAA 60.601 57.895 0.00 0.00 0.00 2.69
1466 1726 1.172180 CCTGCCAGTTCCGCTCAAAA 61.172 55.000 0.00 0.00 0.00 2.44
1467 1727 0.667993 CTGCCAGTTCCGCTCAAAAA 59.332 50.000 0.00 0.00 0.00 1.94
1566 1850 6.723298 TTGTTTGTCCTGTCCATATTTTGT 57.277 33.333 0.00 0.00 0.00 2.83
1633 1929 5.008911 TCAAATGATCGCCCATGTATTCAAG 59.991 40.000 0.00 0.00 0.00 3.02
1767 2068 1.583054 AACGCAGGAGTTGAGTTCAC 58.417 50.000 0.00 0.00 45.08 3.18
1782 2083 9.950496 AGTTGAGTTCACTTATGTTCATAGAAT 57.050 29.630 0.00 0.00 0.00 2.40
2614 3217 3.300388 TCAATCTCCTACGCTGGAAGAT 58.700 45.455 0.00 2.26 35.43 2.40
2615 3218 3.319405 TCAATCTCCTACGCTGGAAGATC 59.681 47.826 0.00 0.00 35.43 2.75
2616 3219 2.738587 TCTCCTACGCTGGAAGATCT 57.261 50.000 0.00 0.00 35.43 2.75
2744 3356 2.016318 CGCATGACAAGGAAAGCCATA 58.984 47.619 0.00 0.00 36.29 2.74
2841 3457 8.995027 ATTATTTGCTCCAACATTACTATGGA 57.005 30.769 0.00 0.00 40.84 3.41
3015 3646 0.878961 AAGTCTTGACCGCGTGTTCC 60.879 55.000 4.92 0.00 0.00 3.62
3274 3941 2.555732 ATTTAGGGGTCGGGACTACA 57.444 50.000 0.00 0.00 0.00 2.74
3452 4122 0.111061 TGCTCCCACATCACTTTGCT 59.889 50.000 0.00 0.00 0.00 3.91
3468 4138 3.302365 TTGCTGAGTTAATTTGCTGCC 57.698 42.857 0.00 0.00 0.00 4.85
3469 4139 2.237643 TGCTGAGTTAATTTGCTGCCA 58.762 42.857 0.00 0.00 0.00 4.92
3487 4157 3.245087 TGCCAGGTAGAACTATTTTGGCA 60.245 43.478 21.24 21.24 46.04 4.92
3488 4158 3.761752 GCCAGGTAGAACTATTTTGGCAA 59.238 43.478 19.30 0.00 39.48 4.52
3489 4159 4.219725 GCCAGGTAGAACTATTTTGGCAAA 59.780 41.667 8.93 8.93 39.48 3.68
3490 4160 5.105351 GCCAGGTAGAACTATTTTGGCAAAT 60.105 40.000 14.29 6.80 39.48 2.32
3491 4161 6.574269 GCCAGGTAGAACTATTTTGGCAAATT 60.574 38.462 14.29 12.75 39.48 1.82
3511 4181 3.202829 TGTAGGTTCGTTTTGCTTCCT 57.797 42.857 0.00 0.00 0.00 3.36
3591 4261 1.630369 TGCTTCATGAGGCCTAGTTGT 59.370 47.619 25.20 0.00 31.78 3.32
3642 4312 3.501445 GCTCTGCTAAATCTGCTAATGGG 59.499 47.826 0.00 0.00 0.00 4.00
3665 4335 7.669722 TGGGACTATTGCTTTCTTACTTTCAAT 59.330 33.333 0.00 0.00 0.00 2.57
3701 4371 4.564041 CCTGATGCTATTGTAGTAGGCAG 58.436 47.826 0.00 0.00 36.35 4.85
3715 4385 3.889538 AGTAGGCAGCACAGATACGATAA 59.110 43.478 0.00 0.00 0.00 1.75
3723 4393 6.442112 CAGCACAGATACGATAATTGAGAGA 58.558 40.000 0.00 0.00 0.00 3.10
3742 4412 2.501723 AGACATTTGGAGTCAGCCGTAT 59.498 45.455 0.00 0.00 38.46 3.06
3746 4416 1.557099 TTGGAGTCAGCCGTATGAGT 58.443 50.000 0.00 0.00 35.53 3.41
3768 4438 0.037232 CTCTCAAACCACTCCGGGAC 60.037 60.000 0.00 0.00 40.22 4.46
3770 4440 0.320771 CTCAAACCACTCCGGGACAG 60.321 60.000 0.00 0.00 40.22 3.51
3798 4512 1.751924 GACGGCAAGAGATAGGTCTGT 59.248 52.381 0.00 0.00 33.97 3.41
3814 4528 1.203287 TCTGTCTCTTGTCGGCATCAG 59.797 52.381 0.00 0.00 0.00 2.90
3827 4541 2.918571 CATCAGTGCACTTGACGGT 58.081 52.632 18.94 0.00 0.00 4.83
3829 4543 0.603707 ATCAGTGCACTTGACGGTGG 60.604 55.000 18.94 3.10 37.65 4.61
3830 4544 1.227527 CAGTGCACTTGACGGTGGA 60.228 57.895 18.94 0.00 37.65 4.02
3831 4545 1.069765 AGTGCACTTGACGGTGGAG 59.930 57.895 15.25 0.00 38.16 3.86
3832 4546 1.069090 GTGCACTTGACGGTGGAGA 59.931 57.895 10.32 0.00 38.16 3.71
3833 4547 0.320771 GTGCACTTGACGGTGGAGAT 60.321 55.000 10.32 0.00 38.16 2.75
3834 4548 0.037326 TGCACTTGACGGTGGAGATC 60.037 55.000 0.00 0.00 37.65 2.75
3835 4549 0.037326 GCACTTGACGGTGGAGATCA 60.037 55.000 0.00 0.00 37.65 2.92
3863 4577 1.134310 TCAGCCGATGCAGATCACATT 60.134 47.619 0.00 0.00 41.13 2.71
3864 4578 1.674441 CAGCCGATGCAGATCACATTT 59.326 47.619 0.00 0.00 41.13 2.32
3865 4579 2.098607 CAGCCGATGCAGATCACATTTT 59.901 45.455 0.00 0.00 41.13 1.82
3866 4580 2.756760 AGCCGATGCAGATCACATTTTT 59.243 40.909 0.00 0.00 41.13 1.94
3867 4581 3.111098 GCCGATGCAGATCACATTTTTC 58.889 45.455 0.00 0.00 37.47 2.29
3868 4582 3.181493 GCCGATGCAGATCACATTTTTCT 60.181 43.478 0.00 0.00 37.47 2.52
3869 4583 4.348656 CCGATGCAGATCACATTTTTCTG 58.651 43.478 0.00 0.00 39.87 3.02
3870 4584 4.095334 CCGATGCAGATCACATTTTTCTGA 59.905 41.667 3.47 0.00 39.36 3.27
3871 4585 5.392272 CCGATGCAGATCACATTTTTCTGAA 60.392 40.000 3.47 0.00 39.36 3.02
3872 4586 6.088173 CGATGCAGATCACATTTTTCTGAAA 58.912 36.000 0.00 0.00 39.36 2.69
3873 4587 6.250739 CGATGCAGATCACATTTTTCTGAAAG 59.749 38.462 2.75 0.00 39.36 2.62
3874 4588 5.775686 TGCAGATCACATTTTTCTGAAAGG 58.224 37.500 2.75 0.74 39.36 3.11
3875 4589 5.535783 TGCAGATCACATTTTTCTGAAAGGA 59.464 36.000 2.75 0.00 39.36 3.36
3876 4590 6.091437 GCAGATCACATTTTTCTGAAAGGAG 58.909 40.000 2.75 0.45 39.36 3.69
3877 4591 6.618811 CAGATCACATTTTTCTGAAAGGAGG 58.381 40.000 2.75 1.56 39.36 4.30
3878 4592 6.432162 CAGATCACATTTTTCTGAAAGGAGGA 59.568 38.462 2.75 0.55 39.36 3.71
3879 4593 7.122353 CAGATCACATTTTTCTGAAAGGAGGAT 59.878 37.037 2.75 4.92 39.36 3.24
3880 4594 6.579666 TCACATTTTTCTGAAAGGAGGATG 57.420 37.500 2.75 6.87 0.00 3.51
3881 4595 5.047802 TCACATTTTTCTGAAAGGAGGATGC 60.048 40.000 2.75 0.00 0.00 3.91
3882 4596 4.834496 ACATTTTTCTGAAAGGAGGATGCA 59.166 37.500 2.75 0.00 0.00 3.96
3883 4597 5.047519 ACATTTTTCTGAAAGGAGGATGCAG 60.048 40.000 2.75 0.00 0.00 4.41
3884 4598 4.371624 TTTTCTGAAAGGAGGATGCAGA 57.628 40.909 2.75 0.00 34.11 4.26
3885 4599 4.581309 TTTCTGAAAGGAGGATGCAGAT 57.419 40.909 0.00 0.00 35.73 2.90
3886 4600 3.834489 TCTGAAAGGAGGATGCAGATC 57.166 47.619 0.00 0.00 31.24 2.75
3887 4601 3.109928 TCTGAAAGGAGGATGCAGATCA 58.890 45.455 0.00 0.00 31.24 2.92
3888 4602 3.118482 TCTGAAAGGAGGATGCAGATCAC 60.118 47.826 0.00 0.00 31.24 3.06
3889 4603 2.573009 TGAAAGGAGGATGCAGATCACA 59.427 45.455 0.00 0.00 0.00 3.58
3890 4604 3.201487 TGAAAGGAGGATGCAGATCACAT 59.799 43.478 0.00 0.00 0.00 3.21
3891 4605 3.947612 AAGGAGGATGCAGATCACATT 57.052 42.857 0.00 0.00 0.00 2.71
3895 4609 3.285484 GAGGATGCAGATCACATTGGTT 58.715 45.455 0.00 0.00 0.00 3.67
3896 4610 3.021695 AGGATGCAGATCACATTGGTTG 58.978 45.455 0.00 0.00 0.00 3.77
3911 4625 1.289244 GGTTGGGATGGAGGGGATGT 61.289 60.000 0.00 0.00 0.00 3.06
3939 4654 2.197577 GTCTTGCTCGGATGTTCTAGC 58.802 52.381 0.00 0.00 35.51 3.42
3942 4657 2.760634 TGCTCGGATGTTCTAGCAAA 57.239 45.000 0.00 0.00 41.74 3.68
3955 4670 2.691011 TCTAGCAAAAACCTTGCCGTTT 59.309 40.909 5.87 0.00 45.98 3.60
3973 4688 0.537188 TTGAGACGAGGATCCAAGGC 59.463 55.000 15.82 9.53 0.00 4.35
3985 4700 3.536164 CAAGGCAGTTGGTTGGCA 58.464 55.556 2.43 0.00 45.32 4.92
4002 4717 2.040544 CATGTCGGTGGGCCTTGAC 61.041 63.158 4.53 10.62 0.00 3.18
4004 4719 3.998672 GTCGGTGGGCCTTGACGA 61.999 66.667 4.53 6.71 0.00 4.20
4023 4739 2.173669 CGTAGAGCCCAATGCCACG 61.174 63.158 0.00 0.00 42.71 4.94
4032 4748 1.499056 CAATGCCACGAGTGACAGC 59.501 57.895 4.59 0.61 0.00 4.40
4033 4749 2.029288 AATGCCACGAGTGACAGCG 61.029 57.895 4.59 0.00 0.00 5.18
4088 4846 1.911766 GAGGAGTTCCGGTGGGACA 60.912 63.158 0.00 0.00 43.74 4.02
4118 4876 2.175530 ACGAAGTCGACGTCATCATC 57.824 50.000 27.07 8.94 29.74 2.92
4119 4877 1.105363 CGAAGTCGACGTCATCATCG 58.895 55.000 27.07 16.34 43.02 3.84
4120 4878 1.267383 CGAAGTCGACGTCATCATCGA 60.267 52.381 27.07 9.19 44.68 3.59
4123 4881 3.729004 TCGACGTCATCATCGATCG 57.271 52.632 17.16 9.36 42.18 3.69
4124 4882 0.384353 TCGACGTCATCATCGATCGC 60.384 55.000 17.16 0.00 42.18 4.58
4125 4883 0.384849 CGACGTCATCATCGATCGCT 60.385 55.000 17.16 0.00 40.86 4.93
4160 4918 1.016130 CGAGATCAAGGCACAGCGTT 61.016 55.000 0.00 0.00 37.10 4.84
4178 4939 3.192799 TTTTTCCCCTTGTGTGCGA 57.807 47.368 0.00 0.00 0.00 5.10
4182 4943 3.443045 CCCCTTGTGTGCGATGCC 61.443 66.667 0.00 0.00 0.00 4.40
4207 4968 2.643551 CAAGGAATTACGTGCTGGGAT 58.356 47.619 0.00 0.00 0.00 3.85
4213 5415 1.906105 TTACGTGCTGGGATGGGGAC 61.906 60.000 0.00 0.00 0.00 4.46
4246 5448 3.488090 GCGTGCTGGGCGTTACTC 61.488 66.667 0.00 0.00 0.00 2.59
4263 5465 1.541588 ACTCTGTTACGTACCCGAACC 59.458 52.381 0.00 0.00 37.88 3.62
4279 5481 3.709987 CGAACCGGAAAAGGTATATCGT 58.290 45.455 9.46 0.00 45.21 3.73
4281 5483 4.685924 GAACCGGAAAAGGTATATCGTGA 58.314 43.478 9.46 0.00 45.21 4.35
4282 5484 4.317671 ACCGGAAAAGGTATATCGTGAG 57.682 45.455 9.46 0.00 43.89 3.51
4284 5486 3.243771 CCGGAAAAGGTATATCGTGAGCT 60.244 47.826 0.00 0.00 0.00 4.09
4285 5487 3.736252 CGGAAAAGGTATATCGTGAGCTG 59.264 47.826 0.00 0.00 0.00 4.24
4286 5488 4.058817 GGAAAAGGTATATCGTGAGCTGG 58.941 47.826 0.00 0.00 0.00 4.85
4287 5489 3.753294 AAAGGTATATCGTGAGCTGGG 57.247 47.619 0.00 0.00 0.00 4.45
4288 5490 0.969894 AGGTATATCGTGAGCTGGGC 59.030 55.000 0.00 0.00 0.00 5.36
4289 5491 0.679505 GGTATATCGTGAGCTGGGCA 59.320 55.000 0.00 0.00 0.00 5.36
4290 5492 1.276421 GGTATATCGTGAGCTGGGCAT 59.724 52.381 0.00 0.00 0.00 4.40
4293 5495 2.820059 TATCGTGAGCTGGGCATTAG 57.180 50.000 0.00 0.00 0.00 1.73
4295 5497 0.175760 TCGTGAGCTGGGCATTAGTC 59.824 55.000 0.00 0.00 0.00 2.59
4297 5499 1.406069 CGTGAGCTGGGCATTAGTCTT 60.406 52.381 0.00 0.00 0.00 3.01
4298 5500 2.716217 GTGAGCTGGGCATTAGTCTTT 58.284 47.619 0.00 0.00 0.00 2.52
4299 5501 3.084786 GTGAGCTGGGCATTAGTCTTTT 58.915 45.455 0.00 0.00 0.00 2.27
4300 5502 3.507622 GTGAGCTGGGCATTAGTCTTTTT 59.492 43.478 0.00 0.00 0.00 1.94
4301 5503 4.700213 GTGAGCTGGGCATTAGTCTTTTTA 59.300 41.667 0.00 0.00 0.00 1.52
4302 5504 4.700213 TGAGCTGGGCATTAGTCTTTTTAC 59.300 41.667 0.00 0.00 0.00 2.01
4303 5505 4.017126 AGCTGGGCATTAGTCTTTTTACC 58.983 43.478 0.00 0.00 0.00 2.85
4304 5506 3.130516 GCTGGGCATTAGTCTTTTTACCC 59.869 47.826 0.00 0.00 36.60 3.69
4305 5507 3.349022 TGGGCATTAGTCTTTTTACCCG 58.651 45.455 0.00 0.00 39.05 5.28
4306 5508 3.009253 TGGGCATTAGTCTTTTTACCCGA 59.991 43.478 0.00 0.00 39.05 5.14
4307 5509 4.011698 GGGCATTAGTCTTTTTACCCGAA 58.988 43.478 0.00 0.00 0.00 4.30
4308 5510 4.142534 GGGCATTAGTCTTTTTACCCGAAC 60.143 45.833 0.00 0.00 0.00 3.95
4309 5511 4.142534 GGCATTAGTCTTTTTACCCGAACC 60.143 45.833 0.00 0.00 0.00 3.62
4346 5549 8.789825 TCTTCTTCTCGATACCTATATGTACC 57.210 38.462 0.00 0.00 0.00 3.34
4355 5559 4.729552 ACCTATATGTACCGGACCAGTA 57.270 45.455 9.46 1.05 0.00 2.74
4394 5599 3.990806 CGCGCAAACGTTGGTCGA 61.991 61.111 19.20 0.00 42.83 4.20
4418 5623 4.451629 TCTGTTTCGATCTCCAACCTAC 57.548 45.455 0.00 0.00 0.00 3.18
4419 5624 3.119602 TCTGTTTCGATCTCCAACCTACG 60.120 47.826 0.00 0.00 0.00 3.51
4420 5625 2.821378 TGTTTCGATCTCCAACCTACGA 59.179 45.455 0.00 0.00 0.00 3.43
4421 5626 3.446161 TGTTTCGATCTCCAACCTACGAT 59.554 43.478 0.00 0.00 0.00 3.73
4460 5665 2.505982 CGGATCTGCCACCGGAAT 59.494 61.111 9.46 0.00 44.59 3.01
4478 5683 2.076622 ATTGGTCCGCGAGATCTCCG 62.077 60.000 17.13 19.00 0.00 4.63
4522 5727 2.746277 GTCCGCTTCCATGCCGTT 60.746 61.111 0.00 0.00 0.00 4.44
4525 5730 2.625823 CCGCTTCCATGCCGTTTGT 61.626 57.895 0.00 0.00 0.00 2.83
4537 5742 0.179200 CCGTTTGTAAGTCATGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
4544 5749 1.867233 GTAAGTCATGGCGCGATTCAT 59.133 47.619 12.10 7.30 0.00 2.57
4554 5759 1.873903 GCGCGATTCATACCATCCAGT 60.874 52.381 12.10 0.00 0.00 4.00
4557 5762 2.802816 GCGATTCATACCATCCAGTGAC 59.197 50.000 0.00 0.00 0.00 3.67
4559 5764 2.979814 TTCATACCATCCAGTGACGG 57.020 50.000 0.00 0.00 0.00 4.79
4562 5776 1.696097 ATACCATCCAGTGACGGCCC 61.696 60.000 0.00 0.00 0.00 5.80
4575 5789 2.440980 GGCCCATCAGTTCCTGCC 60.441 66.667 0.00 0.00 0.00 4.85
4598 5812 0.601311 GCTCCTTGCGCCTAGTATGG 60.601 60.000 4.18 0.00 0.00 2.74
4599 5813 0.753262 CTCCTTGCGCCTAGTATGGT 59.247 55.000 4.18 0.00 32.76 3.55
4738 5952 1.141881 CGCCATCCGCTACTTCACT 59.858 57.895 0.00 0.00 34.21 3.41
4746 5960 0.741221 CGCTACTTCACTGCTTCCCC 60.741 60.000 0.00 0.00 0.00 4.81
4747 5961 0.393132 GCTACTTCACTGCTTCCCCC 60.393 60.000 0.00 0.00 0.00 5.40
4765 5979 2.990479 GACGGGCTGACCTTCCAT 59.010 61.111 0.00 0.00 36.97 3.41
4825 6039 1.922821 CCCAAATGAGGGGGTCGAT 59.077 57.895 0.00 0.00 45.60 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.268920 GGCATCAGACCCTTGCGA 59.731 61.111 0.00 0.00 37.25 5.10
59 60 0.325933 TGAGTGGCATCAGACCCTTG 59.674 55.000 0.00 0.00 0.00 3.61
170 171 2.532532 ATGCATAGGAGGCCGCCAT 61.533 57.895 28.68 15.70 0.00 4.40
183 184 4.146745 TGATCTTGTACTCTGCATGCAT 57.853 40.909 22.97 9.42 0.00 3.96
245 246 2.360350 CTCACTGCAACGCCCCAT 60.360 61.111 0.00 0.00 0.00 4.00
265 266 0.608130 CACCAGACGTCCATCCTTCA 59.392 55.000 13.01 0.00 0.00 3.02
372 373 2.125673 CCGAACGATGCCGAGGTT 60.126 61.111 0.00 0.00 39.50 3.50
449 450 1.160329 GCAGCGTATGCGGAGGAATT 61.160 55.000 11.51 0.00 46.99 2.17
475 476 0.525668 GCTGGTACATCGTGTCCTCG 60.526 60.000 0.00 0.00 38.20 4.63
541 542 1.592223 GTGGGCTACAGAGTTCGCT 59.408 57.895 0.00 0.00 0.00 4.93
547 548 0.459237 CAAGCTCGTGGGCTACAGAG 60.459 60.000 14.87 14.87 42.24 3.35
568 569 1.545136 TCACAACTACGGCCAATCGTA 59.455 47.619 2.24 0.00 43.59 3.43
589 590 1.750778 CATTCCATGTACTGGTTGGGC 59.249 52.381 10.08 0.00 46.08 5.36
627 628 4.641645 CACAGGCGCCCACTTGGA 62.642 66.667 26.15 0.00 37.39 3.53
741 742 8.675504 TGAAATTTGTTCACTACGTAGGAAAAA 58.324 29.630 25.63 21.13 0.00 1.94
742 743 8.211116 TGAAATTTGTTCACTACGTAGGAAAA 57.789 30.769 25.63 17.22 0.00 2.29
743 744 7.041644 CCTGAAATTTGTTCACTACGTAGGAAA 60.042 37.037 25.63 16.00 0.00 3.13
744 745 6.425721 CCTGAAATTTGTTCACTACGTAGGAA 59.574 38.462 25.63 20.88 0.00 3.36
752 755 3.304391 GCGCACCTGAAATTTGTTCACTA 60.304 43.478 0.30 0.00 0.00 2.74
766 770 1.078918 TTGGAGAGATGCGCACCTG 60.079 57.895 12.71 0.00 0.00 4.00
820 846 2.607750 TGGAGAGACTGGGCCACC 60.608 66.667 0.00 0.88 37.24 4.61
838 864 1.758862 GGGGATTTCAGATTGGGCTTG 59.241 52.381 0.00 0.00 0.00 4.01
863 890 1.665916 GTGTCTCTCTGCGCTGCAA 60.666 57.895 9.73 0.00 38.41 4.08
954 997 2.125633 GAGGGGCGAGGAACGAAC 60.126 66.667 0.00 0.00 45.77 3.95
1074 1134 4.034394 AGGAAACAAAACGAACCTACGAAC 59.966 41.667 0.00 0.00 37.03 3.95
1076 1136 3.556775 CAGGAAACAAAACGAACCTACGA 59.443 43.478 0.00 0.00 37.03 3.43
1204 1324 4.065088 TCTAGACAAGCATGTGAACAACC 58.935 43.478 0.00 0.00 40.74 3.77
1338 1598 3.630769 ACGAGATCAGAGCGTAATACCAA 59.369 43.478 0.00 0.00 36.37 3.67
1339 1599 3.211865 ACGAGATCAGAGCGTAATACCA 58.788 45.455 0.00 0.00 36.37 3.25
1341 1601 6.372185 ACATAACGAGATCAGAGCGTAATAC 58.628 40.000 0.00 0.00 37.26 1.89
1342 1602 6.348295 GGACATAACGAGATCAGAGCGTAATA 60.348 42.308 0.00 0.00 37.26 0.98
1343 1603 5.440234 ACATAACGAGATCAGAGCGTAAT 57.560 39.130 0.00 0.00 37.26 1.89
1344 1604 4.261072 GGACATAACGAGATCAGAGCGTAA 60.261 45.833 0.00 0.00 37.26 3.18
1345 1605 3.250280 GGACATAACGAGATCAGAGCGTA 59.750 47.826 0.00 0.00 37.26 4.42
1346 1606 2.033550 GGACATAACGAGATCAGAGCGT 59.966 50.000 0.00 0.00 40.35 5.07
1347 1607 2.605823 GGGACATAACGAGATCAGAGCG 60.606 54.545 0.00 0.00 0.00 5.03
1350 1610 3.117474 AGGAGGGACATAACGAGATCAGA 60.117 47.826 0.00 0.00 0.00 3.27
1351 1611 3.226777 AGGAGGGACATAACGAGATCAG 58.773 50.000 0.00 0.00 0.00 2.90
1352 1612 3.117474 AGAGGAGGGACATAACGAGATCA 60.117 47.826 0.00 0.00 0.00 2.92
1353 1613 3.492337 AGAGGAGGGACATAACGAGATC 58.508 50.000 0.00 0.00 0.00 2.75
1354 1614 3.603965 AGAGGAGGGACATAACGAGAT 57.396 47.619 0.00 0.00 0.00 2.75
1355 1615 3.383698 AAGAGGAGGGACATAACGAGA 57.616 47.619 0.00 0.00 0.00 4.04
1356 1616 5.048364 CAGATAAGAGGAGGGACATAACGAG 60.048 48.000 0.00 0.00 0.00 4.18
1357 1617 4.827835 CAGATAAGAGGAGGGACATAACGA 59.172 45.833 0.00 0.00 0.00 3.85
1358 1618 4.021894 CCAGATAAGAGGAGGGACATAACG 60.022 50.000 0.00 0.00 0.00 3.18
1359 1619 4.902448 ACCAGATAAGAGGAGGGACATAAC 59.098 45.833 0.00 0.00 0.00 1.89
1360 1620 5.157770 ACCAGATAAGAGGAGGGACATAA 57.842 43.478 0.00 0.00 0.00 1.90
1361 1621 4.834406 ACCAGATAAGAGGAGGGACATA 57.166 45.455 0.00 0.00 0.00 2.29
1362 1622 3.713764 CAACCAGATAAGAGGAGGGACAT 59.286 47.826 0.00 0.00 0.00 3.06
1363 1623 3.107601 CAACCAGATAAGAGGAGGGACA 58.892 50.000 0.00 0.00 0.00 4.02
1364 1624 3.108376 ACAACCAGATAAGAGGAGGGAC 58.892 50.000 0.00 0.00 0.00 4.46
1365 1625 3.375699 GACAACCAGATAAGAGGAGGGA 58.624 50.000 0.00 0.00 0.00 4.20
1366 1626 2.101582 CGACAACCAGATAAGAGGAGGG 59.898 54.545 0.00 0.00 0.00 4.30
1367 1627 3.024547 TCGACAACCAGATAAGAGGAGG 58.975 50.000 0.00 0.00 0.00 4.30
1368 1628 4.261825 GGATCGACAACCAGATAAGAGGAG 60.262 50.000 0.00 0.00 0.00 3.69
1369 1629 3.637229 GGATCGACAACCAGATAAGAGGA 59.363 47.826 0.00 0.00 0.00 3.71
1370 1630 3.639094 AGGATCGACAACCAGATAAGAGG 59.361 47.826 7.66 0.00 0.00 3.69
1371 1631 4.582656 AGAGGATCGACAACCAGATAAGAG 59.417 45.833 7.66 0.00 42.67 2.85
1372 1632 4.537751 AGAGGATCGACAACCAGATAAGA 58.462 43.478 7.66 0.00 42.67 2.10
1373 1633 4.927978 AGAGGATCGACAACCAGATAAG 57.072 45.455 7.66 0.00 42.67 1.73
1374 1634 5.299531 CAGTAGAGGATCGACAACCAGATAA 59.700 44.000 7.66 0.00 43.66 1.75
1375 1635 4.822350 CAGTAGAGGATCGACAACCAGATA 59.178 45.833 7.66 0.00 43.66 1.98
1376 1636 3.634448 CAGTAGAGGATCGACAACCAGAT 59.366 47.826 7.66 0.00 43.66 2.90
1377 1637 3.017442 CAGTAGAGGATCGACAACCAGA 58.983 50.000 7.66 0.00 43.66 3.86
1378 1638 2.099921 CCAGTAGAGGATCGACAACCAG 59.900 54.545 7.66 0.00 43.66 4.00
1379 1639 2.100197 CCAGTAGAGGATCGACAACCA 58.900 52.381 7.66 0.00 43.66 3.67
1380 1640 1.202428 GCCAGTAGAGGATCGACAACC 60.202 57.143 0.00 0.00 43.66 3.77
1381 1641 1.476891 TGCCAGTAGAGGATCGACAAC 59.523 52.381 0.00 0.00 43.66 3.32
1382 1642 1.847328 TGCCAGTAGAGGATCGACAA 58.153 50.000 0.00 0.00 43.66 3.18
1383 1643 1.476891 GTTGCCAGTAGAGGATCGACA 59.523 52.381 0.00 0.00 43.66 4.35
1384 1644 1.476891 TGTTGCCAGTAGAGGATCGAC 59.523 52.381 0.00 0.00 42.67 4.20
1385 1645 1.476891 GTGTTGCCAGTAGAGGATCGA 59.523 52.381 0.00 0.00 42.67 3.59
1386 1646 1.478510 AGTGTTGCCAGTAGAGGATCG 59.521 52.381 0.00 0.00 42.67 3.69
1387 1647 2.234908 ACAGTGTTGCCAGTAGAGGATC 59.765 50.000 0.00 0.00 0.00 3.36
1388 1648 2.260822 ACAGTGTTGCCAGTAGAGGAT 58.739 47.619 0.00 0.00 0.00 3.24
1389 1649 1.717032 ACAGTGTTGCCAGTAGAGGA 58.283 50.000 0.00 0.00 0.00 3.71
1390 1650 2.299013 TGTACAGTGTTGCCAGTAGAGG 59.701 50.000 0.00 0.00 0.00 3.69
1391 1651 3.005897 ACTGTACAGTGTTGCCAGTAGAG 59.994 47.826 27.41 0.00 40.75 2.43
1392 1652 2.963101 ACTGTACAGTGTTGCCAGTAGA 59.037 45.455 27.41 0.00 40.75 2.59
1393 1653 3.386768 ACTGTACAGTGTTGCCAGTAG 57.613 47.619 27.41 0.00 40.75 2.57
1394 1654 3.830744 AACTGTACAGTGTTGCCAGTA 57.169 42.857 28.55 0.00 41.58 2.74
1395 1655 2.710096 AACTGTACAGTGTTGCCAGT 57.290 45.000 28.55 8.01 41.58 4.00
1396 1656 4.351192 GAAAAACTGTACAGTGTTGCCAG 58.649 43.478 28.12 8.31 37.88 4.85
1397 1657 4.364415 GAAAAACTGTACAGTGTTGCCA 57.636 40.909 28.12 0.00 37.88 4.92
1398 1658 3.702330 GGAAAAACTGTACAGTGTTGCC 58.298 45.455 31.96 31.96 44.88 4.52
1399 1659 3.490249 GGGGAAAAACTGTACAGTGTTGC 60.490 47.826 28.12 26.07 37.88 4.17
1400 1660 3.067601 GGGGGAAAAACTGTACAGTGTTG 59.932 47.826 28.12 4.88 37.88 3.33
1401 1661 3.053170 AGGGGGAAAAACTGTACAGTGTT 60.053 43.478 28.55 25.78 40.45 3.32
1402 1662 2.512476 AGGGGGAAAAACTGTACAGTGT 59.488 45.455 28.55 21.22 41.58 3.55
1403 1663 3.223674 AGGGGGAAAAACTGTACAGTG 57.776 47.619 28.55 4.81 41.58 3.66
1404 1664 3.978672 AGTAGGGGGAAAAACTGTACAGT 59.021 43.478 22.95 22.95 44.94 3.55
1405 1665 4.635699 AGTAGGGGGAAAAACTGTACAG 57.364 45.455 21.44 21.44 0.00 2.74
1406 1666 7.811482 TTATAGTAGGGGGAAAAACTGTACA 57.189 36.000 0.00 0.00 0.00 2.90
1407 1667 8.488668 TCATTATAGTAGGGGGAAAAACTGTAC 58.511 37.037 0.00 0.00 0.00 2.90
1408 1668 8.626917 TCATTATAGTAGGGGGAAAAACTGTA 57.373 34.615 0.00 0.00 0.00 2.74
1409 1669 7.519347 TCATTATAGTAGGGGGAAAAACTGT 57.481 36.000 0.00 0.00 0.00 3.55
1410 1670 8.817092 TTTCATTATAGTAGGGGGAAAAACTG 57.183 34.615 0.00 0.00 0.00 3.16
1411 1671 9.831682 TTTTTCATTATAGTAGGGGGAAAAACT 57.168 29.630 0.00 0.00 37.65 2.66
1413 1673 9.262240 CCTTTTTCATTATAGTAGGGGGAAAAA 57.738 33.333 0.00 0.00 39.20 1.94
1414 1674 7.343574 GCCTTTTTCATTATAGTAGGGGGAAAA 59.656 37.037 0.00 0.00 32.74 2.29
1415 1675 6.837048 GCCTTTTTCATTATAGTAGGGGGAAA 59.163 38.462 0.00 0.00 0.00 3.13
1416 1676 6.068735 TGCCTTTTTCATTATAGTAGGGGGAA 60.069 38.462 0.00 0.00 0.00 3.97
1417 1677 5.433712 TGCCTTTTTCATTATAGTAGGGGGA 59.566 40.000 0.00 0.00 0.00 4.81
1418 1678 5.701224 TGCCTTTTTCATTATAGTAGGGGG 58.299 41.667 0.00 0.00 0.00 5.40
1419 1679 6.601332 TCTGCCTTTTTCATTATAGTAGGGG 58.399 40.000 0.00 0.00 0.00 4.79
1420 1680 7.556275 TGTTCTGCCTTTTTCATTATAGTAGGG 59.444 37.037 0.00 0.00 0.00 3.53
1421 1681 8.398665 GTGTTCTGCCTTTTTCATTATAGTAGG 58.601 37.037 0.00 0.00 0.00 3.18
1422 1682 8.398665 GGTGTTCTGCCTTTTTCATTATAGTAG 58.601 37.037 0.00 0.00 0.00 2.57
1423 1683 8.107095 AGGTGTTCTGCCTTTTTCATTATAGTA 58.893 33.333 0.00 0.00 31.04 1.82
1424 1684 6.948309 AGGTGTTCTGCCTTTTTCATTATAGT 59.052 34.615 0.00 0.00 31.04 2.12
1425 1685 7.253422 CAGGTGTTCTGCCTTTTTCATTATAG 58.747 38.462 0.00 0.00 36.60 1.31
1426 1686 7.156876 CAGGTGTTCTGCCTTTTTCATTATA 57.843 36.000 0.00 0.00 36.60 0.98
1427 1687 6.029346 CAGGTGTTCTGCCTTTTTCATTAT 57.971 37.500 0.00 0.00 36.60 1.28
1428 1688 5.452078 CAGGTGTTCTGCCTTTTTCATTA 57.548 39.130 0.00 0.00 36.60 1.90
1429 1689 4.326504 CAGGTGTTCTGCCTTTTTCATT 57.673 40.909 0.00 0.00 36.60 2.57
1440 1700 1.230635 CGGAACTGGCAGGTGTTCTG 61.231 60.000 20.34 15.01 46.03 3.02
1441 1701 1.071471 CGGAACTGGCAGGTGTTCT 59.929 57.895 20.34 0.00 41.42 3.01
1442 1702 2.617274 GCGGAACTGGCAGGTGTTC 61.617 63.158 20.34 13.94 41.08 3.18
1443 1703 2.594592 GCGGAACTGGCAGGTGTT 60.595 61.111 20.34 4.72 0.00 3.32
1444 1704 3.537206 GAGCGGAACTGGCAGGTGT 62.537 63.158 20.34 3.10 0.00 4.16
1445 1705 2.743928 GAGCGGAACTGGCAGGTG 60.744 66.667 20.34 1.96 0.00 4.00
1446 1706 2.337879 TTTGAGCGGAACTGGCAGGT 62.338 55.000 20.34 13.55 0.00 4.00
1447 1707 1.172180 TTTTGAGCGGAACTGGCAGG 61.172 55.000 20.34 1.38 0.00 4.85
1448 1708 0.667993 TTTTTGAGCGGAACTGGCAG 59.332 50.000 14.16 14.16 0.00 4.85
1449 1709 2.800516 TTTTTGAGCGGAACTGGCA 58.199 47.368 0.00 0.00 0.00 4.92
1465 1725 4.440663 GCACCTGAACAGAGCTTTCTTTTT 60.441 41.667 3.19 0.00 0.00 1.94
1466 1726 3.067320 GCACCTGAACAGAGCTTTCTTTT 59.933 43.478 3.19 0.00 0.00 2.27
1467 1727 2.620585 GCACCTGAACAGAGCTTTCTTT 59.379 45.455 3.19 0.00 0.00 2.52
1468 1728 2.225467 GCACCTGAACAGAGCTTTCTT 58.775 47.619 3.19 0.00 0.00 2.52
1566 1850 6.723298 TGGAAGAAAGAAAACCTTGCATTA 57.277 33.333 0.00 0.00 34.20 1.90
1606 1896 2.026641 ACATGGGCGATCATTTGAAGG 58.973 47.619 0.00 0.00 0.00 3.46
1633 1929 8.820933 CAGAAAGTTGAAAGGGATTTTCTTTTC 58.179 33.333 1.88 8.15 44.49 2.29
1740 2039 3.365265 CTCCTGCGTTGGGTTGGC 61.365 66.667 0.00 0.00 0.00 4.52
1767 2068 9.926158 AGTCTGCTATGATTCTATGAACATAAG 57.074 33.333 0.00 0.00 0.00 1.73
1782 2083 5.755409 TTAGGGAAACAAGTCTGCTATGA 57.245 39.130 0.00 0.00 0.00 2.15
1846 2163 7.640240 CACTAAGTAAGTTGCTTGTTCTTGTTC 59.360 37.037 15.59 0.00 35.76 3.18
1847 2164 7.120726 ACACTAAGTAAGTTGCTTGTTCTTGTT 59.879 33.333 15.59 0.00 35.76 2.83
1848 2165 6.598064 ACACTAAGTAAGTTGCTTGTTCTTGT 59.402 34.615 15.59 8.47 35.76 3.16
1849 2166 7.016361 ACACTAAGTAAGTTGCTTGTTCTTG 57.984 36.000 15.59 7.95 35.76 3.02
1850 2167 7.226128 GGTACACTAAGTAAGTTGCTTGTTCTT 59.774 37.037 15.59 0.46 35.76 2.52
1851 2168 6.704937 GGTACACTAAGTAAGTTGCTTGTTCT 59.295 38.462 15.59 0.04 35.76 3.01
2134 2468 1.421346 TAGCCCATGCATCCCTCCAG 61.421 60.000 0.00 0.00 41.13 3.86
2437 3040 0.323908 CTTGGAATACCCGGGGCAAA 60.324 55.000 27.92 9.89 37.93 3.68
2605 3208 4.096081 CCATCAACAAGAAGATCTTCCAGC 59.904 45.833 28.01 7.73 40.33 4.85
2614 3217 5.935945 TCAAAGTACCCATCAACAAGAAGA 58.064 37.500 0.00 0.00 0.00 2.87
2615 3218 6.486657 TCTTCAAAGTACCCATCAACAAGAAG 59.513 38.462 0.00 0.00 0.00 2.85
2616 3219 6.262273 GTCTTCAAAGTACCCATCAACAAGAA 59.738 38.462 0.00 0.00 0.00 2.52
2723 3335 0.537143 TGGCTTTCCTTGTCATGCGT 60.537 50.000 0.00 0.00 0.00 5.24
2744 3356 2.097825 GCTTCCCAATGACTGCTTGAT 58.902 47.619 0.00 0.00 0.00 2.57
2841 3457 7.038658 ACAGATTAGTTAGAAGGCAGAAGAAGT 60.039 37.037 0.00 0.00 0.00 3.01
2891 3522 7.345392 ACCCCATTGATAGATACTGCAAAAATT 59.655 33.333 0.00 0.00 0.00 1.82
2912 3543 1.406341 GCTTCGTAACTATGCACCCCA 60.406 52.381 0.00 0.00 0.00 4.96
3015 3646 4.026052 AGTTGGGGGCATTCTGAAATAAG 58.974 43.478 0.00 0.00 0.00 1.73
3274 3941 2.604614 GCTTTGCCACGAAATCGACTTT 60.605 45.455 10.16 0.00 43.02 2.66
3452 4122 2.875296 ACCTGGCAGCAAATTAACTCA 58.125 42.857 9.56 0.00 0.00 3.41
3468 4138 7.378181 ACAATTTGCCAAAATAGTTCTACCTG 58.622 34.615 0.00 0.00 34.84 4.00
3469 4139 7.539034 ACAATTTGCCAAAATAGTTCTACCT 57.461 32.000 0.00 0.00 34.84 3.08
3487 4157 5.068591 AGGAAGCAAAACGAACCTACAATTT 59.931 36.000 0.00 0.00 0.00 1.82
3488 4158 4.583073 AGGAAGCAAAACGAACCTACAATT 59.417 37.500 0.00 0.00 0.00 2.32
3489 4159 4.023193 CAGGAAGCAAAACGAACCTACAAT 60.023 41.667 0.00 0.00 0.00 2.71
3490 4160 3.314080 CAGGAAGCAAAACGAACCTACAA 59.686 43.478 0.00 0.00 0.00 2.41
3491 4161 2.875933 CAGGAAGCAAAACGAACCTACA 59.124 45.455 0.00 0.00 0.00 2.74
3591 4261 6.764085 CCGATAACCCACATAACTTAATCACA 59.236 38.462 0.00 0.00 0.00 3.58
3642 4312 8.730680 TCCATTGAAAGTAAGAAAGCAATAGTC 58.269 33.333 0.00 0.00 0.00 2.59
3665 4335 0.405198 ATCAGGCATGTGGTGTTCCA 59.595 50.000 0.00 0.00 42.05 3.53
3701 4371 6.209361 TGTCTCTCAATTATCGTATCTGTGC 58.791 40.000 0.00 0.00 0.00 4.57
3715 4385 4.260170 GCTGACTCCAAATGTCTCTCAAT 58.740 43.478 0.00 0.00 35.63 2.57
3723 4393 2.236146 TCATACGGCTGACTCCAAATGT 59.764 45.455 0.00 0.00 0.00 2.71
3746 4416 1.263356 CCGGAGTGGTTTGAGAGGTA 58.737 55.000 0.00 0.00 0.00 3.08
3757 4427 1.764571 TTGGAACTGTCCCGGAGTGG 61.765 60.000 0.73 0.00 44.23 4.00
3768 4438 1.466167 CTCTTGCCGTCATTGGAACTG 59.534 52.381 0.00 0.00 0.00 3.16
3770 4440 1.808411 TCTCTTGCCGTCATTGGAAC 58.192 50.000 0.00 0.00 0.00 3.62
3798 4512 0.390340 GCACTGATGCCGACAAGAGA 60.390 55.000 0.00 0.00 46.97 3.10
3814 4528 0.320771 ATCTCCACCGTCAAGTGCAC 60.321 55.000 9.40 9.40 36.38 4.57
3827 4541 2.093288 GGCTGAACAGATGTGATCTCCA 60.093 50.000 5.97 0.00 37.58 3.86
3829 4543 2.159184 TCGGCTGAACAGATGTGATCTC 60.159 50.000 5.97 0.00 37.58 2.75
3830 4544 1.827344 TCGGCTGAACAGATGTGATCT 59.173 47.619 5.97 0.00 41.15 2.75
3831 4545 2.299993 TCGGCTGAACAGATGTGATC 57.700 50.000 5.97 0.00 0.00 2.92
3832 4546 2.558378 CATCGGCTGAACAGATGTGAT 58.442 47.619 0.00 0.00 43.55 3.06
3833 4547 2.014335 CATCGGCTGAACAGATGTGA 57.986 50.000 0.00 0.00 43.55 3.58
3863 4577 4.371624 TCTGCATCCTCCTTTCAGAAAA 57.628 40.909 0.00 0.00 31.62 2.29
3864 4578 4.019051 TGATCTGCATCCTCCTTTCAGAAA 60.019 41.667 0.00 0.00 37.34 2.52
3865 4579 3.520721 TGATCTGCATCCTCCTTTCAGAA 59.479 43.478 0.00 0.00 37.34 3.02
3866 4580 3.109928 TGATCTGCATCCTCCTTTCAGA 58.890 45.455 0.00 0.00 38.05 3.27
3867 4581 3.204526 GTGATCTGCATCCTCCTTTCAG 58.795 50.000 0.00 0.00 0.00 3.02
3868 4582 2.573009 TGTGATCTGCATCCTCCTTTCA 59.427 45.455 0.00 0.00 0.00 2.69
3869 4583 3.272574 TGTGATCTGCATCCTCCTTTC 57.727 47.619 0.00 0.00 0.00 2.62
3870 4584 3.947612 ATGTGATCTGCATCCTCCTTT 57.052 42.857 0.00 0.00 0.00 3.11
3871 4585 3.552875 CAATGTGATCTGCATCCTCCTT 58.447 45.455 0.00 0.00 0.00 3.36
3872 4586 2.158652 CCAATGTGATCTGCATCCTCCT 60.159 50.000 0.00 0.00 0.00 3.69
3873 4587 2.228059 CCAATGTGATCTGCATCCTCC 58.772 52.381 0.00 0.00 0.00 4.30
3874 4588 2.928334 ACCAATGTGATCTGCATCCTC 58.072 47.619 0.00 0.00 0.00 3.71
3875 4589 3.021695 CAACCAATGTGATCTGCATCCT 58.978 45.455 0.00 0.00 0.00 3.24
3876 4590 2.100252 CCAACCAATGTGATCTGCATCC 59.900 50.000 0.00 0.00 0.00 3.51
3877 4591 2.100252 CCCAACCAATGTGATCTGCATC 59.900 50.000 0.00 0.00 0.00 3.91
3878 4592 2.104967 CCCAACCAATGTGATCTGCAT 58.895 47.619 0.00 0.00 0.00 3.96
3879 4593 1.075212 TCCCAACCAATGTGATCTGCA 59.925 47.619 0.00 0.00 0.00 4.41
3880 4594 1.838112 TCCCAACCAATGTGATCTGC 58.162 50.000 0.00 0.00 0.00 4.26
3881 4595 2.691526 CCATCCCAACCAATGTGATCTG 59.308 50.000 0.00 0.00 0.00 2.90
3882 4596 2.582172 TCCATCCCAACCAATGTGATCT 59.418 45.455 0.00 0.00 0.00 2.75
3883 4597 2.954318 CTCCATCCCAACCAATGTGATC 59.046 50.000 0.00 0.00 0.00 2.92
3884 4598 2.358510 CCTCCATCCCAACCAATGTGAT 60.359 50.000 0.00 0.00 0.00 3.06
3885 4599 1.005805 CCTCCATCCCAACCAATGTGA 59.994 52.381 0.00 0.00 0.00 3.58
3886 4600 1.477553 CCTCCATCCCAACCAATGTG 58.522 55.000 0.00 0.00 0.00 3.21
3887 4601 0.336048 CCCTCCATCCCAACCAATGT 59.664 55.000 0.00 0.00 0.00 2.71
3888 4602 0.397535 CCCCTCCATCCCAACCAATG 60.398 60.000 0.00 0.00 0.00 2.82
3889 4603 0.554865 TCCCCTCCATCCCAACCAAT 60.555 55.000 0.00 0.00 0.00 3.16
3890 4604 0.554865 ATCCCCTCCATCCCAACCAA 60.555 55.000 0.00 0.00 0.00 3.67
3891 4605 1.086565 ATCCCCTCCATCCCAACCA 59.913 57.895 0.00 0.00 0.00 3.67
3895 4609 1.697394 CCACATCCCCTCCATCCCA 60.697 63.158 0.00 0.00 0.00 4.37
3896 4610 1.697754 ACCACATCCCCTCCATCCC 60.698 63.158 0.00 0.00 0.00 3.85
3919 4633 2.197577 GCTAGAACATCCGAGCAAGAC 58.802 52.381 0.00 0.00 34.96 3.01
3939 4654 2.857748 GTCTCAAACGGCAAGGTTTTTG 59.142 45.455 0.00 0.00 38.01 2.44
3955 4670 0.614697 TGCCTTGGATCCTCGTCTCA 60.615 55.000 14.23 0.79 0.00 3.27
3973 4688 1.172180 ACCGACATGCCAACCAACTG 61.172 55.000 0.00 0.00 0.00 3.16
3985 4700 2.351276 GTCAAGGCCCACCGACAT 59.649 61.111 0.00 0.00 42.76 3.06
4002 4717 1.883084 GGCATTGGGCTCTACGTCG 60.883 63.158 0.00 0.00 44.01 5.12
4004 4719 1.078426 GTGGCATTGGGCTCTACGT 60.078 57.895 0.00 0.00 44.01 3.57
4023 4739 4.760840 TCTCGCGCGCTGTCACTC 62.761 66.667 30.48 0.00 0.00 3.51
4048 4776 2.046988 TCATCACTGGCAGTGGCG 60.047 61.111 38.88 30.44 45.94 5.69
4107 4865 1.048494 CAGCGATCGATGATGACGTC 58.952 55.000 28.37 9.11 32.62 4.34
4108 4866 0.318191 CCAGCGATCGATGATGACGT 60.318 55.000 33.13 0.00 32.62 4.34
4110 4868 0.319383 AGCCAGCGATCGATGATGAC 60.319 55.000 33.13 18.82 32.62 3.06
4160 4918 1.339610 CATCGCACACAAGGGGAAAAA 59.660 47.619 0.00 0.00 0.00 1.94
4166 4924 2.672651 TGGCATCGCACACAAGGG 60.673 61.111 0.00 0.00 0.00 3.95
4182 4943 1.806542 AGCACGTAATTCCTTGCAGTG 59.193 47.619 2.42 0.00 37.44 3.66
4207 4968 2.054799 GTTGCCATCTATAGGTCCCCA 58.945 52.381 0.00 0.00 0.00 4.96
4213 5415 0.033504 ACGCCGTTGCCATCTATAGG 59.966 55.000 0.00 0.00 0.00 2.57
4237 5439 2.519963 GGTACGTAACAGAGTAACGCC 58.480 52.381 5.55 0.00 40.18 5.68
4243 5445 1.541588 GGTTCGGGTACGTAACAGAGT 59.458 52.381 13.60 0.00 41.85 3.24
4244 5446 1.466360 CGGTTCGGGTACGTAACAGAG 60.466 57.143 13.60 3.31 41.85 3.35
4245 5447 0.521291 CGGTTCGGGTACGTAACAGA 59.479 55.000 13.60 11.52 41.85 3.41
4246 5448 0.456653 CCGGTTCGGGTACGTAACAG 60.457 60.000 13.60 8.91 44.15 3.16
4263 5465 3.736252 CAGCTCACGATATACCTTTTCCG 59.264 47.826 0.00 0.00 0.00 4.30
4271 5473 2.751166 ATGCCCAGCTCACGATATAC 57.249 50.000 0.00 0.00 0.00 1.47
4272 5474 3.832490 ACTAATGCCCAGCTCACGATATA 59.168 43.478 0.00 0.00 0.00 0.86
4273 5475 2.634940 ACTAATGCCCAGCTCACGATAT 59.365 45.455 0.00 0.00 0.00 1.63
4275 5477 0.833287 ACTAATGCCCAGCTCACGAT 59.167 50.000 0.00 0.00 0.00 3.73
4277 5479 0.176680 AGACTAATGCCCAGCTCACG 59.823 55.000 0.00 0.00 0.00 4.35
4278 5480 2.409948 AAGACTAATGCCCAGCTCAC 57.590 50.000 0.00 0.00 0.00 3.51
4279 5481 3.439857 AAAAGACTAATGCCCAGCTCA 57.560 42.857 0.00 0.00 0.00 4.26
4281 5483 4.017126 GGTAAAAAGACTAATGCCCAGCT 58.983 43.478 0.00 0.00 0.00 4.24
4282 5484 3.130516 GGGTAAAAAGACTAATGCCCAGC 59.869 47.826 0.00 0.00 37.62 4.85
4284 5486 3.009253 TCGGGTAAAAAGACTAATGCCCA 59.991 43.478 8.34 0.00 37.55 5.36
4285 5487 3.613030 TCGGGTAAAAAGACTAATGCCC 58.387 45.455 0.00 0.00 34.68 5.36
4286 5488 4.142534 GGTTCGGGTAAAAAGACTAATGCC 60.143 45.833 0.00 0.00 0.00 4.40
4287 5489 4.456566 TGGTTCGGGTAAAAAGACTAATGC 59.543 41.667 0.00 0.00 0.00 3.56
4288 5490 5.935789 TCTGGTTCGGGTAAAAAGACTAATG 59.064 40.000 0.00 0.00 0.00 1.90
4289 5491 6.117975 TCTGGTTCGGGTAAAAAGACTAAT 57.882 37.500 0.00 0.00 0.00 1.73
4290 5492 5.549742 TCTGGTTCGGGTAAAAAGACTAA 57.450 39.130 0.00 0.00 0.00 2.24
4293 5495 5.503662 TTTTCTGGTTCGGGTAAAAAGAC 57.496 39.130 0.00 0.00 0.00 3.01
4295 5497 4.581409 TCCTTTTCTGGTTCGGGTAAAAAG 59.419 41.667 0.00 0.00 34.87 2.27
4297 5499 3.884693 GTCCTTTTCTGGTTCGGGTAAAA 59.115 43.478 0.00 0.00 0.00 1.52
4298 5500 3.136992 AGTCCTTTTCTGGTTCGGGTAAA 59.863 43.478 0.00 0.00 0.00 2.01
4299 5501 2.707257 AGTCCTTTTCTGGTTCGGGTAA 59.293 45.455 0.00 0.00 0.00 2.85
4300 5502 2.332117 AGTCCTTTTCTGGTTCGGGTA 58.668 47.619 0.00 0.00 0.00 3.69
4301 5503 1.137697 AGTCCTTTTCTGGTTCGGGT 58.862 50.000 0.00 0.00 0.00 5.28
4302 5504 2.152016 GAAGTCCTTTTCTGGTTCGGG 58.848 52.381 0.00 0.00 0.00 5.14
4303 5505 3.127425 AGAAGTCCTTTTCTGGTTCGG 57.873 47.619 0.00 0.00 36.12 4.30
4304 5506 4.381411 AGAAGAAGTCCTTTTCTGGTTCG 58.619 43.478 4.68 0.00 37.48 3.95
4305 5507 6.058833 AGAAGAAGAAGTCCTTTTCTGGTTC 58.941 40.000 0.00 0.00 37.48 3.62
4306 5508 6.007485 AGAAGAAGAAGTCCTTTTCTGGTT 57.993 37.500 0.00 0.00 37.48 3.67
4307 5509 5.616270 GAGAAGAAGAAGTCCTTTTCTGGT 58.384 41.667 0.00 0.00 37.48 4.00
4308 5510 4.688413 CGAGAAGAAGAAGTCCTTTTCTGG 59.312 45.833 0.00 0.00 37.48 3.86
4309 5511 5.533482 TCGAGAAGAAGAAGTCCTTTTCTG 58.467 41.667 0.00 0.00 37.48 3.02
4379 5583 1.070175 AGAATTCGACCAACGTTTGCG 60.070 47.619 0.00 2.72 43.13 4.85
4380 5584 2.286772 ACAGAATTCGACCAACGTTTGC 60.287 45.455 0.00 0.00 43.13 3.68
4394 5599 4.911390 AGGTTGGAGATCGAAACAGAATT 58.089 39.130 0.00 0.00 0.00 2.17
4418 5623 1.202973 GACGAGTGCATGGTCGATCG 61.203 60.000 19.21 9.36 39.53 3.69
4419 5624 0.179137 TGACGAGTGCATGGTCGATC 60.179 55.000 19.21 13.68 39.36 3.69
4420 5625 0.461548 ATGACGAGTGCATGGTCGAT 59.538 50.000 19.21 6.88 39.36 3.59
4421 5626 0.246360 AATGACGAGTGCATGGTCGA 59.754 50.000 19.21 6.32 39.36 4.20
4460 5665 2.771639 CGGAGATCTCGCGGACCAA 61.772 63.158 16.46 0.00 0.00 3.67
4522 5727 1.663643 GAATCGCGCCATGACTTACAA 59.336 47.619 0.00 0.00 0.00 2.41
4525 5730 2.238942 ATGAATCGCGCCATGACTTA 57.761 45.000 0.00 0.00 0.00 2.24
4537 5742 3.052745 CGTCACTGGATGGTATGAATCG 58.947 50.000 0.00 0.00 0.00 3.34
4554 5759 1.918293 AGGAACTGATGGGCCGTCA 60.918 57.895 26.18 26.18 37.18 4.35
4598 5812 1.521450 TTGAGGGAGTCGTCGTCCAC 61.521 60.000 4.47 0.00 35.57 4.02
4599 5813 0.824595 TTTGAGGGAGTCGTCGTCCA 60.825 55.000 4.47 0.00 35.57 4.02
4746 5960 4.452733 GGAAGGTCAGCCCGTCGG 62.453 72.222 3.60 3.60 42.15 4.79
4747 5961 3.019003 ATGGAAGGTCAGCCCGTCG 62.019 63.158 0.00 0.00 42.15 5.12
4765 5979 4.043100 TCTCCGGCGAGAGGGTCA 62.043 66.667 20.15 3.80 40.34 4.02
4819 6033 2.125269 CCCAACCGTCCATCGACC 60.125 66.667 0.00 0.00 42.86 4.79
4825 6039 1.540367 ATTCTCCCCCAACCGTCCA 60.540 57.895 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.